AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0105960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0105960 MtrunA17_Chr2g0287651 51.111 180 73 4 26 191 47 225 2.11e-50 175
Msa0105960 MtrunA17_Chr1g0203051 36.620 142 85 2 54 191 89 229 7.18e-29 113
Msa0105960 MtrunA17_Chr1g0171741 36.800 125 73 3 51 171 140 262 1.43e-22 92.4
Msa0105960 MtrunA17_Chr5g0448761 34.028 144 90 2 52 190 68 211 4.17e-17 79.7
Msa0105960 MtrunA17_Chr2g0276841 34.028 144 87 3 52 188 78 220 7.29e-17 79.0
Msa0105960 MtrunA17_Chr1g0203721 36.054 147 87 4 52 193 71 215 7.51e-16 75.9
Msa0105960 MtrunA17_Chr6g0458391 43.089 123 61 4 52 168 233 352 2.38e-15 74.3
Msa0105960 MtrunA17_Chr6g0458391 33.065 124 77 2 52 172 99 219 6.60e-14 70.1
Msa0105960 MtrunA17_Chr1g0198761 30.303 198 114 6 20 195 13 208 5.99e-14 70.5
Msa0105960 MtrunA17_Chr3g0082121 29.121 182 108 4 27 192 17 193 2.24e-13 68.6
Msa0105960 MtrunA17_Chr8g0363841 29.054 148 98 3 49 192 22 166 3.24e-13 68.2
Msa0105960 MtrunA17_Chr2g0329421 36.000 100 58 2 52 148 35 131 3.80e-13 65.9
Msa0105960 MtrunA17_Chr2g0329361 38.144 97 55 2 52 144 69 164 6.17e-13 65.9
Msa0105960 MtrunA17_Chr5g0431001 29.577 142 87 4 52 181 69 209 1.18e-12 66.2
Msa0105960 MtrunA17_Chr8g0389811 34.653 101 61 2 56 152 96 195 1.84e-12 63.9
Msa0105960 MtrunA17_Chr2g0294841 25.789 190 128 4 13 189 10 199 3.39e-12 65.1
Msa0105960 MtrunA17_Chr2g0290391 29.452 146 91 4 52 189 59 200 6.23e-12 64.3
Msa0105960 MtrunA17_Chr1g0202341 29.268 164 106 4 49 205 52 212 8.47e-12 63.9
Msa0105960 MtrunA17_Chr4g0033611 33.065 124 76 3 52 171 84 204 9.80e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0105960 AT1G10240.2 34.722 144 86 3 52 188 56 198 4.67e-18 82.8
Msa0105960 AT1G10240.1 34.722 144 86 3 52 188 56 198 4.67e-18 82.8
Msa0105960 AT4G38180.1 34.266 143 90 2 52 190 81 223 3.68e-17 80.1
Msa0105960 AT5G28530.1 27.211 147 99 3 49 189 60 204 7.88e-12 64.7
Msa0105960 AT5G28530.3 27.211 147 99 3 49 189 60 204 8.56e-12 64.3
Msa0105960 AT5G28530.2 27.211 147 99 3 49 189 60 204 8.56e-12 64.3
Msa0105960 AT3G59470.2 37.000 100 57 2 52 148 90 186 9.64e-12 63.2
Msa0105960 AT5G28530.4 27.211 147 99 3 49 189 60 204 1.17e-11 63.9
Msa0105960 AT5G28530.5 27.211 147 99 3 49 189 60 204 1.32e-11 63.9
Msa0105960 AT3G59470.3 37.000 100 57 2 52 148 78 174 1.40e-11 62.8
Msa0105960 AT3G59470.1 37.000 100 57 2 52 148 78 174 1.40e-11 62.8
Msa0105960 AT3G07500.1 40.816 98 53 2 52 146 41 136 3.40e-11 61.2

Find 43 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTGATTACAATGAGAATT+TGG 0.226630 1_3:+14840009 Msa0105960:CDS
TACATTTATTTCCTGCATAT+CGG 0.267468 1_3:+14840416 Msa0105960:CDS
TATCAAAACATGTCATATAA+TGG 0.273332 1_3:+14840489 Msa0105960:CDS
TTTGATGAGGATGGAGATAA+TGG 0.283559 1_3:+14839929 Msa0105960:CDS
AAAGCACCGGTTTCGTTGTT+AGG 0.291848 1_3:+14840149 Msa0105960:CDS
ATCAAAACATGTCATATAAT+GGG 0.298640 1_3:+14840490 Msa0105960:CDS
ACATTTATTTCCTGCATATC+GGG 0.352320 1_3:+14840417 Msa0105960:CDS
GGCGAGCTGGACAATTATTC+CGG 0.353940 1_3:-14840303 None:intergenic
TTGGATTCTTGTGTAATAGA+TGG 0.384545 1_3:+14840028 Msa0105960:CDS
TCTGATCCGGTGTTGATAAC+TGG 0.398541 1_3:+14841408 Msa0105960:CDS
CAGTTTGTGTGCAATAGAAA+TGG 0.414838 1_3:+14840220 Msa0105960:CDS
AACACTTGACTAGGGTCAAT+AGG 0.418818 1_3:+14840257 Msa0105960:CDS
ATCTTTCCTAACAACGAAAC+CGG 0.440915 1_3:-14840155 None:intergenic
AAAGTGTACCGCAGCAAAGT+TGG 0.448110 1_3:+14840178 Msa0105960:CDS
GGGGTACATGGTGGCAAACA+AGG 0.461825 1_3:+14840510 Msa0105960:CDS
AAGTGTACCGCAGCAAAGTT+GGG 0.465894 1_3:+14840179 Msa0105960:CDS
TCCGGTGTTGATAACTGGTC+TGG 0.467260 1_3:+14841413 Msa0105960:CDS
GCGAGCTGGACAATTATTCC+GGG 0.478461 1_3:-14840302 None:intergenic
TCCGTCAATCCCCGATATGC+AGG 0.486078 1_3:-14840427 None:intergenic
TAAGAGTAATACCTCTGATC+CGG 0.486946 1_3:+14841395 Msa0105960:intron
TCTAGAGACCACGATGTCTC+TGG 0.494750 1_3:+14839989 Msa0105960:CDS
TCCTGCATATCGGGGATTGA+CGG 0.498073 1_3:+14840426 Msa0105960:CDS
TTGATGAGGATGGAGATAAT+GGG 0.498718 1_3:+14839930 Msa0105960:CDS
TAACGTATACGAAGGCGAGC+TGG 0.516616 1_3:-14840316 None:intergenic
CTGGACAATTATTCCGGGTG+AGG 0.532213 1_3:-14840297 None:intergenic
ATTCTTGTGTAATAGATGGT+AGG 0.533148 1_3:+14840032 Msa0105960:CDS
ATGTCATATAATGGGGTACA+TGG 0.556484 1_3:+14840498 Msa0105960:CDS
TGGACAATTATTCCGGGTGA+GGG 0.565731 1_3:-14840296 None:intergenic
GAGAACATAGACCCCTCACC+CGG 0.567472 1_3:+14840284 Msa0105960:CDS
GTTGACAGTATGCAATCGTA+TGG 0.580581 1_3:+14840466 Msa0105960:CDS
CATTTATTTCCTGCATATCG+GGG 0.582815 1_3:+14840418 Msa0105960:CDS
GGGTACATGGTGGCAAACAA+GGG 0.589509 1_3:+14840511 Msa0105960:CDS
TACATGGTGGCAAACAAGGG+TGG 0.611316 1_3:+14840514 Msa0105960:CDS
AGTTATCAACACCGGATCAG+AGG 0.615238 1_3:-14841406 None:intergenic
CTGGATTATAACGTATACGA+AGG 0.628678 1_3:-14840324 None:intergenic
TCCAGACCAGTTATCAACAC+CGG 0.632781 1_3:-14841414 None:intergenic
ATAATCCAGAAAGCTTGAGA+TGG 0.638128 1_3:+14840338 Msa0105960:intron
AGAAAGCTTGAGATGGAGAG+TGG 0.639417 1_3:+14840345 Msa0105960:intron
GGACAATTATTCCGGGTGAG+GGG 0.643647 1_3:-14840295 None:intergenic
TCAAAACATGTCATATAATG+GGG 0.649125 1_3:+14840491 Msa0105960:CDS
TCATATAATGGGGTACATGG+TGG 0.662255 1_3:+14840501 Msa0105960:CDS
TTTGTTTCCCAACTTTGCTG+CGG 0.666357 1_3:-14840186 None:intergenic
TGTAATCACCAGAGACATCG+TGG 0.695321 1_3:-14839997 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAATGTATATATTTTGAT+GGG - chr1_3:14840405-14840424 None:intergenic 10.0%
!!! AATAAATGTATATATTTTGA+TGG - chr1_3:14840406-14840425 None:intergenic 10.0%
!!! ATAAATGTATATATTTTGAT+GGG - chr1_3:14840405-14840424 None:intergenic 10.0%
!!! AATAAATGTATATATTTTGA+TGG - chr1_3:14840406-14840425 None:intergenic 10.0%
!!! TAAATGTATATATTTTGATG+GGG - chr1_3:14840404-14840423 None:intergenic 15.0%
!!! AAAGATTTGTATAACTATTT+TGG + chr1_3:14840562-14840581 Msa0105960:intron 15.0%
!!! TCATATTTTACATATAACAT+AGG - chr1_3:14840667-14840686 None:intergenic 15.0%
!! TTATATGTAAAATATGAGAA+GGG + chr1_3:14840670-14840689 Msa0105960:intron 15.0%
!!! TAAATGTATATATTTTGATG+GGG - chr1_3:14840404-14840423 None:intergenic 15.0%
!!! AAAGATTTGTATAACTATTT+TGG + chr1_3:14840562-14840581 Msa0105960:intron 15.0%
!!! TCATATTTTACATATAACAT+AGG - chr1_3:14840667-14840686 None:intergenic 15.0%
!! TTATATGTAAAATATGAGAA+GGG + chr1_3:14840670-14840689 Msa0105960:intron 15.0%
!!! TTCTGATTTTAATTTTGATG+AGG + chr1_3:14839916-14839935 Msa0105960:CDS 20.0%
!!! GATATTATGAATCTTGATTT+TGG + chr1_3:14840085-14840104 Msa0105960:intron 20.0%
!!! TTTTGCATACTTTTGATAAA+AGG - chr1_3:14840131-14840150 None:intergenic 20.0%
!! TATCAAAACATGTCATATAA+TGG + chr1_3:14840489-14840508 Msa0105960:CDS 20.0%
!! ATCAAAACATGTCATATAAT+GGG + chr1_3:14840490-14840509 Msa0105960:CDS 20.0%
!! GTTATATGTAAAATATGAGA+AGG + chr1_3:14840669-14840688 Msa0105960:intron 20.0%
!!! GTATTTATTTTTCTTGTATG+TGG - chr1_3:14840785-14840804 None:intergenic 20.0%
!! AAATAAATACAATCTTCCTT+TGG + chr1_3:14840795-14840814 Msa0105960:intron 20.0%
!!! ATTCACAAACGATTATTTTT+GGG + chr1_3:14840842-14840861 Msa0105960:intron 20.0%
!!! TTCTGATTTTAATTTTGATG+AGG + chr1_3:14839916-14839935 Msa0105960:CDS 20.0%
!!! GATATTATGAATCTTGATTT+TGG + chr1_3:14840085-14840104 Msa0105960:intron 20.0%
!!! TTTTGCATACTTTTGATAAA+AGG - chr1_3:14840131-14840150 None:intergenic 20.0%
!! TATCAAAACATGTCATATAA+TGG + chr1_3:14840489-14840508 Msa0105960:CDS 20.0%
!! ATCAAAACATGTCATATAAT+GGG + chr1_3:14840490-14840509 Msa0105960:CDS 20.0%
!! GTTATATGTAAAATATGAGA+AGG + chr1_3:14840669-14840688 Msa0105960:intron 20.0%
!!! GTATTTATTTTTCTTGTATG+TGG - chr1_3:14840785-14840804 None:intergenic 20.0%
!! AAATAAATACAATCTTCCTT+TGG + chr1_3:14840795-14840814 Msa0105960:intron 20.0%
!!! ATTCACAAACGATTATTTTT+GGG + chr1_3:14840842-14840861 Msa0105960:intron 20.0%
!!! GATTTTAATTTTGATGAGGA+TGG + chr1_3:14839920-14839939 Msa0105960:CDS 25.0%
! TGTTAAGATTAATACCATGA+CGG + chr1_3:14840057-14840076 Msa0105960:intron 25.0%
! TACATTTATTTCCTGCATAT+CGG + chr1_3:14840416-14840435 Msa0105960:CDS 25.0%
! TCAAAACATGTCATATAATG+GGG + chr1_3:14840491-14840510 Msa0105960:CDS 25.0%
!!! TAACTATTTTGGCAAGAAAA+TGG + chr1_3:14840573-14840592 Msa0105960:intron 25.0%
!!! AACTATTTTGGCAAGAAAAT+GGG + chr1_3:14840574-14840593 Msa0105960:intron 25.0%
!!! ATGGGTATTGATATTAAAGA+TGG + chr1_3:14840592-14840611 Msa0105960:intron 25.0%
!! GGAAATTGAAAAGATTGTTT+TGG + chr1_3:14840701-14840720 Msa0105960:intron 25.0%
!!! CGAAATGATTTTTTGTGTTT+TGG + chr1_3:14840739-14840758 Msa0105960:intron 25.0%
! CAAAAATAATCGTTTGTGAA+TGG - chr1_3:14840843-14840862 None:intergenic 25.0%
!! CATTCACAAACGATTATTTT+TGG + chr1_3:14840841-14840860 Msa0105960:intron 25.0%
!!! TTCACAAACGATTATTTTTG+GGG + chr1_3:14840843-14840862 Msa0105960:intron 25.0%
! AAACAATAGAGACATATACA+TGG + chr1_3:14840884-14840903 Msa0105960:intron 25.0%
! AACAATAGAGACATATACAT+GGG + chr1_3:14840885-14840904 Msa0105960:intron 25.0%
!!! TACTTTCGAGATAAGTTTTT+TGG + chr1_3:14841228-14841247 Msa0105960:intron 25.0%
!!! GATTTTAATTTTGATGAGGA+TGG + chr1_3:14839920-14839939 Msa0105960:CDS 25.0%
! TGTTAAGATTAATACCATGA+CGG + chr1_3:14840057-14840076 Msa0105960:intron 25.0%
! TACATTTATTTCCTGCATAT+CGG + chr1_3:14840416-14840435 Msa0105960:CDS 25.0%
! TCAAAACATGTCATATAATG+GGG + chr1_3:14840491-14840510 Msa0105960:CDS 25.0%
!!! TAACTATTTTGGCAAGAAAA+TGG + chr1_3:14840573-14840592 Msa0105960:intron 25.0%
!!! AACTATTTTGGCAAGAAAAT+GGG + chr1_3:14840574-14840593 Msa0105960:intron 25.0%
!!! ATGGGTATTGATATTAAAGA+TGG + chr1_3:14840592-14840611 Msa0105960:intron 25.0%
!! GGAAATTGAAAAGATTGTTT+TGG + chr1_3:14840701-14840720 Msa0105960:intron 25.0%
!!! CGAAATGATTTTTTGTGTTT+TGG + chr1_3:14840739-14840758 Msa0105960:intron 25.0%
! CAAAAATAATCGTTTGTGAA+TGG - chr1_3:14840843-14840862 None:intergenic 25.0%
!! CATTCACAAACGATTATTTT+TGG + chr1_3:14840841-14840860 Msa0105960:intron 25.0%
!!! TTCACAAACGATTATTTTTG+GGG + chr1_3:14840843-14840862 Msa0105960:intron 25.0%
! AAACAATAGAGACATATACA+TGG + chr1_3:14840884-14840903 Msa0105960:intron 25.0%
! AACAATAGAGACATATACAT+GGG + chr1_3:14840885-14840904 Msa0105960:intron 25.0%
!!! TACTTTCGAGATAAGTTTTT+TGG + chr1_3:14841228-14841247 Msa0105960:intron 25.0%
TGGTGATTACAATGAGAATT+TGG + chr1_3:14840009-14840028 Msa0105960:CDS 30.0%
TTGGATTCTTGTGTAATAGA+TGG + chr1_3:14840028-14840047 Msa0105960:CDS 30.0%
ATTCTTGTGTAATAGATGGT+AGG + chr1_3:14840032-14840051 Msa0105960:CDS 30.0%
AAGCAAAAAACACTTGACTA+GGG + chr1_3:14840249-14840268 Msa0105960:CDS 30.0%
ACATTTATTTCCTGCATATC+GGG + chr1_3:14840417-14840436 Msa0105960:CDS 30.0%
! CAATCTTTTCAATTTCCCAT+TGG - chr1_3:14840698-14840717 None:intergenic 30.0%
!!! AAAAGATTGTTTTGGACAGA+TGG + chr1_3:14840709-14840728 Msa0105960:intron 30.0%
! AATTCGTTTCTAGAAGCAAT+GGG + chr1_3:14840913-14840932 Msa0105960:intron 30.0%
TTTCAAGAAAGCAATGTACT+CGG + chr1_3:14841089-14841108 Msa0105960:intron 30.0%
AAAACTCTTCAAATTCCTCT+GGG - chr1_3:14841122-14841141 None:intergenic 30.0%
! AGAGGAATTTGAAGAGTTTT+GGG + chr1_3:14841122-14841141 Msa0105960:intron 30.0%
!! TTCTAAAACATACGAGAACA+AGG + chr1_3:14841188-14841207 Msa0105960:intron 30.0%
ATACGAGAACAAGGAATTAT+GGG + chr1_3:14841197-14841216 Msa0105960:intron 30.0%
! AAACTTATCTCGAAAGTATG+CGG - chr1_3:14841226-14841245 None:intergenic 30.0%
!!! ATAAGTTTTTTGGTCGCATA+CGG + chr1_3:14841238-14841257 Msa0105960:intron 30.0%
TGGTGATTACAATGAGAATT+TGG + chr1_3:14840009-14840028 Msa0105960:CDS 30.0%
TTGGATTCTTGTGTAATAGA+TGG + chr1_3:14840028-14840047 Msa0105960:CDS 30.0%
ATTCTTGTGTAATAGATGGT+AGG + chr1_3:14840032-14840051 Msa0105960:CDS 30.0%
AAGCAAAAAACACTTGACTA+GGG + chr1_3:14840249-14840268 Msa0105960:CDS 30.0%
ACATTTATTTCCTGCATATC+GGG + chr1_3:14840417-14840436 Msa0105960:CDS 30.0%
! CAATCTTTTCAATTTCCCAT+TGG - chr1_3:14840698-14840717 None:intergenic 30.0%
!!! AAAAGATTGTTTTGGACAGA+TGG + chr1_3:14840709-14840728 Msa0105960:intron 30.0%
! AATTCGTTTCTAGAAGCAAT+GGG + chr1_3:14840913-14840932 Msa0105960:intron 30.0%
TTTCAAGAAAGCAATGTACT+CGG + chr1_3:14841089-14841108 Msa0105960:intron 30.0%
AAAACTCTTCAAATTCCTCT+GGG - chr1_3:14841122-14841141 None:intergenic 30.0%
! AGAGGAATTTGAAGAGTTTT+GGG + chr1_3:14841122-14841141 Msa0105960:intron 30.0%
!! TTCTAAAACATACGAGAACA+AGG + chr1_3:14841188-14841207 Msa0105960:intron 30.0%
ATACGAGAACAAGGAATTAT+GGG + chr1_3:14841197-14841216 Msa0105960:intron 30.0%
! AAACTTATCTCGAAAGTATG+CGG - chr1_3:14841226-14841245 None:intergenic 30.0%
!!! ATAAGTTTTTTGGTCGCATA+CGG + chr1_3:14841238-14841257 Msa0105960:intron 30.0%
TTTGATGAGGATGGAGATAA+TGG + chr1_3:14839929-14839948 Msa0105960:CDS 35.0%
TTGATGAGGATGGAGATAAT+GGG + chr1_3:14839930-14839949 Msa0105960:CDS 35.0%
TAAGATTAATACCATGACGG+CGG + chr1_3:14840060-14840079 Msa0105960:intron 35.0%
! CAAAAGTATGCAAAAAGCAC+CGG + chr1_3:14840136-14840155 Msa0105960:CDS 35.0%
ATCTTTCCTAACAACGAAAC+CGG - chr1_3:14840158-14840177 None:intergenic 35.0%
CAGTTTGTGTGCAATAGAAA+TGG + chr1_3:14840220-14840239 Msa0105960:CDS 35.0%
GAAGCAAAAAACACTTGACT+AGG + chr1_3:14840248-14840267 Msa0105960:CDS 35.0%
CTGGATTATAACGTATACGA+AGG - chr1_3:14840327-14840346 None:intergenic 35.0%
ATAATCCAGAAAGCTTGAGA+TGG + chr1_3:14840338-14840357 Msa0105960:intron 35.0%
! TGGAGAGTGGTAATTTTTGA+AGG + chr1_3:14840358-14840377 Msa0105960:CDS 35.0%
! GGAGAGTGGTAATTTTTGAA+GGG + chr1_3:14840359-14840378 Msa0105960:CDS 35.0%
!!! ATTTTGATGGGGTTAGTTCA+TGG - chr1_3:14840393-14840412 None:intergenic 35.0%
CATTTATTTCCTGCATATCG+GGG + chr1_3:14840418-14840437 Msa0105960:CDS 35.0%
! ATGTCATATAATGGGGTACA+TGG + chr1_3:14840498-14840517 Msa0105960:CDS 35.0%
TTGCTTCTCTAAGCTATCTT+CGG + chr1_3:14840623-14840642 Msa0105960:intron 35.0%
!! AAATATGAGAAGGGTACCAA+TGG + chr1_3:14840679-14840698 Msa0105960:intron 35.0%
!! AATATGAGAAGGGTACCAAT+GGG + chr1_3:14840680-14840699 Msa0105960:intron 35.0%
! CTTCCTTTGGTAATATTCTC+TGG + chr1_3:14840808-14840827 Msa0105960:intron 35.0%
! GAATTCGTTTCTAGAAGCAA+TGG + chr1_3:14840912-14840931 Msa0105960:intron 35.0%
AAACTCTTCAAATTCCTCTG+GGG - chr1_3:14841121-14841140 None:intergenic 35.0%
CAAAACTCTTCAAATTCCTC+TGG - chr1_3:14841123-14841142 None:intergenic 35.0%
! CAGAGGAATTTGAAGAGTTT+TGG + chr1_3:14841121-14841140 Msa0105960:intron 35.0%
CATACGAGAACAAGGAATTA+TGG + chr1_3:14841196-14841215 Msa0105960:intron 35.0%
TTCTATACTCTCTCAATGTG+TGG - chr1_3:14841353-14841372 None:intergenic 35.0%
TAAGAGTAATACCTCTGATC+CGG + chr1_3:14841395-14841414 Msa0105960:intron 35.0%
TTTGATGAGGATGGAGATAA+TGG + chr1_3:14839929-14839948 Msa0105960:CDS 35.0%
TTGATGAGGATGGAGATAAT+GGG + chr1_3:14839930-14839949 Msa0105960:CDS 35.0%
TAAGATTAATACCATGACGG+CGG + chr1_3:14840060-14840079 Msa0105960:intron 35.0%
! CAAAAGTATGCAAAAAGCAC+CGG + chr1_3:14840136-14840155 Msa0105960:CDS 35.0%
ATCTTTCCTAACAACGAAAC+CGG - chr1_3:14840158-14840177 None:intergenic 35.0%
CAGTTTGTGTGCAATAGAAA+TGG + chr1_3:14840220-14840239 Msa0105960:CDS 35.0%
GAAGCAAAAAACACTTGACT+AGG + chr1_3:14840248-14840267 Msa0105960:CDS 35.0%
CTGGATTATAACGTATACGA+AGG - chr1_3:14840327-14840346 None:intergenic 35.0%
ATAATCCAGAAAGCTTGAGA+TGG + chr1_3:14840338-14840357 Msa0105960:intron 35.0%
! TGGAGAGTGGTAATTTTTGA+AGG + chr1_3:14840358-14840377 Msa0105960:CDS 35.0%
! GGAGAGTGGTAATTTTTGAA+GGG + chr1_3:14840359-14840378 Msa0105960:CDS 35.0%
!!! ATTTTGATGGGGTTAGTTCA+TGG - chr1_3:14840393-14840412 None:intergenic 35.0%
CATTTATTTCCTGCATATCG+GGG + chr1_3:14840418-14840437 Msa0105960:CDS 35.0%
! ATGTCATATAATGGGGTACA+TGG + chr1_3:14840498-14840517 Msa0105960:CDS 35.0%
TTGCTTCTCTAAGCTATCTT+CGG + chr1_3:14840623-14840642 Msa0105960:intron 35.0%
!! AAATATGAGAAGGGTACCAA+TGG + chr1_3:14840679-14840698 Msa0105960:intron 35.0%
!! AATATGAGAAGGGTACCAAT+GGG + chr1_3:14840680-14840699 Msa0105960:intron 35.0%
! CTTCCTTTGGTAATATTCTC+TGG + chr1_3:14840808-14840827 Msa0105960:intron 35.0%
! GAATTCGTTTCTAGAAGCAA+TGG + chr1_3:14840912-14840931 Msa0105960:intron 35.0%
AAACTCTTCAAATTCCTCTG+GGG - chr1_3:14841121-14841140 None:intergenic 35.0%
CAAAACTCTTCAAATTCCTC+TGG - chr1_3:14841123-14841142 None:intergenic 35.0%
! CAGAGGAATTTGAAGAGTTT+TGG + chr1_3:14841121-14841140 Msa0105960:intron 35.0%
CATACGAGAACAAGGAATTA+TGG + chr1_3:14841196-14841215 Msa0105960:intron 35.0%
TTCTATACTCTCTCAATGTG+TGG - chr1_3:14841353-14841372 None:intergenic 35.0%
TAAGAGTAATACCTCTGATC+CGG + chr1_3:14841395-14841414 Msa0105960:intron 35.0%
!! TGATTTTGGCAGTGAAGAAG+AGG + chr1_3:14840099-14840118 Msa0105960:intron 40.0%
TTTGTTTCCCAACTTTGCTG+CGG - chr1_3:14840189-14840208 None:intergenic 40.0%
AACACTTGACTAGGGTCAAT+AGG + chr1_3:14840257-14840276 Msa0105960:CDS 40.0%
GTTGACAGTATGCAATCGTA+TGG + chr1_3:14840466-14840485 Msa0105960:CDS 40.0%
! TCATATAATGGGGTACATGG+TGG + chr1_3:14840501-14840520 Msa0105960:CDS 40.0%
TGCTTCTCTAAGCTATCTTC+GGG + chr1_3:14840624-14840643 Msa0105960:intron 40.0%
!!! GATTGTTTTGGACAGATGGA+TGG + chr1_3:14840713-14840732 Msa0105960:intron 40.0%
CAGCCAGAGAATATTACCAA+AGG - chr1_3:14840814-14840833 None:intergenic 40.0%
!!! GATTATTTTTGGGGCTGCTT+TGG + chr1_3:14840852-14840871 Msa0105960:intron 40.0%
! TGATGGTGACATGTCTATGA+GGG + chr1_3:14840963-14840982 Msa0105960:intron 40.0%
CACAGTCTGTGAAATGCTTT+GGG - chr1_3:14841009-14841028 None:intergenic 40.0%
ACACAGTCTGTGAAATGCTT+TGG - chr1_3:14841010-14841029 None:intergenic 40.0%
TGAGCTACAGGGTAACAATT+GGG + chr1_3:14841164-14841183 Msa0105960:intron 40.0%
ATTGATTGCTTCACACTGAG+AGG - chr1_3:14841268-14841287 None:intergenic 40.0%
ATGTGTGGTCAAAGTTATGC+AGG - chr1_3:14841338-14841357 None:intergenic 40.0%
!! TGATTTTGGCAGTGAAGAAG+AGG + chr1_3:14840099-14840118 Msa0105960:intron 40.0%
TTTGTTTCCCAACTTTGCTG+CGG - chr1_3:14840189-14840208 None:intergenic 40.0%
AACACTTGACTAGGGTCAAT+AGG + chr1_3:14840257-14840276 Msa0105960:CDS 40.0%
GTTGACAGTATGCAATCGTA+TGG + chr1_3:14840466-14840485 Msa0105960:CDS 40.0%
! TCATATAATGGGGTACATGG+TGG + chr1_3:14840501-14840520 Msa0105960:CDS 40.0%
TGCTTCTCTAAGCTATCTTC+GGG + chr1_3:14840624-14840643 Msa0105960:intron 40.0%
!!! GATTGTTTTGGACAGATGGA+TGG + chr1_3:14840713-14840732 Msa0105960:intron 40.0%
CAGCCAGAGAATATTACCAA+AGG - chr1_3:14840814-14840833 None:intergenic 40.0%
!!! GATTATTTTTGGGGCTGCTT+TGG + chr1_3:14840852-14840871 Msa0105960:intron 40.0%
! TGATGGTGACATGTCTATGA+GGG + chr1_3:14840963-14840982 Msa0105960:intron 40.0%
CACAGTCTGTGAAATGCTTT+GGG - chr1_3:14841009-14841028 None:intergenic 40.0%
ACACAGTCTGTGAAATGCTT+TGG - chr1_3:14841010-14841029 None:intergenic 40.0%
TGAGCTACAGGGTAACAATT+GGG + chr1_3:14841164-14841183 Msa0105960:intron 40.0%
ATTGATTGCTTCACACTGAG+AGG - chr1_3:14841268-14841287 None:intergenic 40.0%
ATGTGTGGTCAAAGTTATGC+AGG - chr1_3:14841338-14841357 None:intergenic 40.0%
TGTAATCACCAGAGACATCG+TGG - chr1_3:14840000-14840019 None:intergenic 45.0%
CATAATATCATCCGCCGTCA+TGG - chr1_3:14840074-14840093 None:intergenic 45.0%
!! AAAGCACCGGTTTCGTTGTT+AGG + chr1_3:14840149-14840168 Msa0105960:CDS 45.0%
AAAGTGTACCGCAGCAAAGT+TGG + chr1_3:14840178-14840197 Msa0105960:CDS 45.0%
AAGTGTACCGCAGCAAAGTT+GGG + chr1_3:14840179-14840198 Msa0105960:CDS 45.0%
TGGACAATTATTCCGGGTGA+GGG - chr1_3:14840299-14840318 None:intergenic 45.0%
ACTCTCCATCTCAAGCTTTC+TGG - chr1_3:14840346-14840365 None:intergenic 45.0%
AGAAAGCTTGAGATGGAGAG+TGG + chr1_3:14840345-14840364 Msa0105960:intron 45.0%
AAGGGTGGATATGATGCTGT+TGG + chr1_3:14840529-14840548 Msa0105960:intron 45.0%
GCTTCTCTAAGCTATCTTCG+GGG + chr1_3:14840625-14840644 Msa0105960:intron 45.0%
CTTCTCTAAGCTATCTTCGG+GGG + chr1_3:14840626-14840645 Msa0105960:intron 45.0%
! CCATCAGTCACTACTGCTTT+TGG - chr1_3:14840949-14840968 None:intergenic 45.0%
CCAAAAGCAGTAGTGACTGA+TGG + chr1_3:14840946-14840965 Msa0105960:intron 45.0%
! CTGATGGTGACATGTCTATG+AGG + chr1_3:14840962-14840981 Msa0105960:intron 45.0%
AGCATTCTTGTGCAAATGCC+AGG - chr1_3:14841034-14841053 None:intergenic 45.0%
TGTTGAGATGAGTGAGCTAC+AGG + chr1_3:14841152-14841171 Msa0105960:intron 45.0%
GTTGAGATGAGTGAGCTACA+GGG + chr1_3:14841153-14841172 Msa0105960:intron 45.0%
GTGAGCTACAGGGTAACAAT+TGG + chr1_3:14841163-14841182 Msa0105960:intron 45.0%
AGTTATCAACACCGGATCAG+AGG - chr1_3:14841409-14841428 None:intergenic 45.0%
!! TCTGATCCGGTGTTGATAAC+TGG + chr1_3:14841408-14841427 Msa0105960:CDS 45.0%
TCCAGACCAGTTATCAACAC+CGG - chr1_3:14841417-14841436 None:intergenic 45.0%
TGTAATCACCAGAGACATCG+TGG - chr1_3:14840000-14840019 None:intergenic 45.0%
CATAATATCATCCGCCGTCA+TGG - chr1_3:14840074-14840093 None:intergenic 45.0%
!! AAAGCACCGGTTTCGTTGTT+AGG + chr1_3:14840149-14840168 Msa0105960:CDS 45.0%
AAAGTGTACCGCAGCAAAGT+TGG + chr1_3:14840178-14840197 Msa0105960:CDS 45.0%
AAGTGTACCGCAGCAAAGTT+GGG + chr1_3:14840179-14840198 Msa0105960:CDS 45.0%
TGGACAATTATTCCGGGTGA+GGG - chr1_3:14840299-14840318 None:intergenic 45.0%
ACTCTCCATCTCAAGCTTTC+TGG - chr1_3:14840346-14840365 None:intergenic 45.0%
AGAAAGCTTGAGATGGAGAG+TGG + chr1_3:14840345-14840364 Msa0105960:intron 45.0%
AAGGGTGGATATGATGCTGT+TGG + chr1_3:14840529-14840548 Msa0105960:intron 45.0%
GCTTCTCTAAGCTATCTTCG+GGG + chr1_3:14840625-14840644 Msa0105960:intron 45.0%
CTTCTCTAAGCTATCTTCGG+GGG + chr1_3:14840626-14840645 Msa0105960:intron 45.0%
! CCATCAGTCACTACTGCTTT+TGG - chr1_3:14840949-14840968 None:intergenic 45.0%
CCAAAAGCAGTAGTGACTGA+TGG + chr1_3:14840946-14840965 Msa0105960:intron 45.0%
! CTGATGGTGACATGTCTATG+AGG + chr1_3:14840962-14840981 Msa0105960:intron 45.0%
AGCATTCTTGTGCAAATGCC+AGG - chr1_3:14841034-14841053 None:intergenic 45.0%
TGTTGAGATGAGTGAGCTAC+AGG + chr1_3:14841152-14841171 Msa0105960:intron 45.0%
GTTGAGATGAGTGAGCTACA+GGG + chr1_3:14841153-14841172 Msa0105960:intron 45.0%
GTGAGCTACAGGGTAACAAT+TGG + chr1_3:14841163-14841182 Msa0105960:intron 45.0%
AGTTATCAACACCGGATCAG+AGG - chr1_3:14841409-14841428 None:intergenic 45.0%
!! TCTGATCCGGTGTTGATAAC+TGG + chr1_3:14841408-14841427 Msa0105960:CDS 45.0%
TCCAGACCAGTTATCAACAC+CGG - chr1_3:14841417-14841436 None:intergenic 45.0%
TCTAGAGACCACGATGTCTC+TGG + chr1_3:14839989-14840008 Msa0105960:CDS 50.0%
GGACAATTATTCCGGGTGAG+GGG - chr1_3:14840298-14840317 None:intergenic 50.0%
CTGGACAATTATTCCGGGTG+AGG - chr1_3:14840300-14840319 None:intergenic 50.0%
GCGAGCTGGACAATTATTCC+GGG - chr1_3:14840305-14840324 None:intergenic 50.0%
GGCGAGCTGGACAATTATTC+CGG - chr1_3:14840306-14840325 None:intergenic 50.0%
TAACGTATACGAAGGCGAGC+TGG - chr1_3:14840319-14840338 None:intergenic 50.0%
TCCTGCATATCGGGGATTGA+CGG + chr1_3:14840426-14840445 Msa0105960:CDS 50.0%
GGGTACATGGTGGCAAACAA+GGG + chr1_3:14840511-14840530 Msa0105960:CDS 50.0%
TACATGGTGGCAAACAAGGG+TGG + chr1_3:14840514-14840533 Msa0105960:CDS 50.0%
TCTAAGCTATCTTCGGGGGA+AGG + chr1_3:14840630-14840649 Msa0105960:intron 50.0%
CATTTCACAGACTGTGTGCC+TGG + chr1_3:14841013-14841032 Msa0105960:intron 50.0%
!! TCCGGTGTTGATAACTGGTC+TGG + chr1_3:14841413-14841432 Msa0105960:CDS 50.0%
TCTAGAGACCACGATGTCTC+TGG + chr1_3:14839989-14840008 Msa0105960:CDS 50.0%
GGACAATTATTCCGGGTGAG+GGG - chr1_3:14840298-14840317 None:intergenic 50.0%
CTGGACAATTATTCCGGGTG+AGG - chr1_3:14840300-14840319 None:intergenic 50.0%
GCGAGCTGGACAATTATTCC+GGG - chr1_3:14840305-14840324 None:intergenic 50.0%
GGCGAGCTGGACAATTATTC+CGG - chr1_3:14840306-14840325 None:intergenic 50.0%
TAACGTATACGAAGGCGAGC+TGG - chr1_3:14840319-14840338 None:intergenic 50.0%
TCCTGCATATCGGGGATTGA+CGG + chr1_3:14840426-14840445 Msa0105960:CDS 50.0%
GGGTACATGGTGGCAAACAA+GGG + chr1_3:14840511-14840530 Msa0105960:CDS 50.0%
TACATGGTGGCAAACAAGGG+TGG + chr1_3:14840514-14840533 Msa0105960:CDS 50.0%
TCTAAGCTATCTTCGGGGGA+AGG + chr1_3:14840630-14840649 Msa0105960:intron 50.0%
CATTTCACAGACTGTGTGCC+TGG + chr1_3:14841013-14841032 Msa0105960:intron 50.0%
!! TCCGGTGTTGATAACTGGTC+TGG + chr1_3:14841413-14841432 Msa0105960:CDS 50.0%
GAGAACATAGACCCCTCACC+CGG + chr1_3:14840284-14840303 Msa0105960:CDS 55.0%
TCCGTCAATCCCCGATATGC+AGG - chr1_3:14840430-14840449 None:intergenic 55.0%
GGGGTACATGGTGGCAAACA+AGG + chr1_3:14840510-14840529 Msa0105960:CDS 55.0%
AAGCTATCTTCGGGGGAAGG+CGG + chr1_3:14840633-14840652 Msa0105960:intron 55.0%
GTACTCGGATTTCACCCCAG+AGG + chr1_3:14841104-14841123 Msa0105960:intron 55.0%
GAGAACATAGACCCCTCACC+CGG + chr1_3:14840284-14840303 Msa0105960:CDS 55.0%
TCCGTCAATCCCCGATATGC+AGG - chr1_3:14840430-14840449 None:intergenic 55.0%
GGGGTACATGGTGGCAAACA+AGG + chr1_3:14840510-14840529 Msa0105960:CDS 55.0%
AAGCTATCTTCGGGGGAAGG+CGG + chr1_3:14840633-14840652 Msa0105960:intron 55.0%
GTACTCGGATTTCACCCCAG+AGG + chr1_3:14841104-14841123 Msa0105960:intron 55.0%
AGCTATCTTCGGGGGAAGGC+GGG + chr1_3:14840634-14840653 Msa0105960:intron 60.0%
AGCTATCTTCGGGGGAAGGC+GGG + chr1_3:14840634-14840653 Msa0105960:intron 60.0%
! TCTTCGGGGGAAGGCGGGCT+TGG + chr1_3:14840639-14840658 Msa0105960:intron 70.0%
! TCTTCGGGGGAAGGCGGGCT+TGG + chr1_3:14840639-14840658 Msa0105960:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 14839899 14841488 14839899 ID=Msa0105960;Name=Msa0105960
chr1_3 mRNA 14839899 14841488 14839899 ID=Msa0105960-mRNA-1;Parent=Msa0105960;Name=Msa0105960-mRNA-1;_AED=0.24;_eAED=0.31;_QI=0|0|0|1|0|0.25|4|0|223
chr1_3 exon 14839899 14840053 14839899 ID=Msa0105960-mRNA-1:exon:5768;Parent=Msa0105960-mRNA-1
chr1_3 exon 14840111 14840334 14840111 ID=Msa0105960-mRNA-1:exon:5769;Parent=Msa0105960-mRNA-1
chr1_3 exon 14840347 14840546 14840347 ID=Msa0105960-mRNA-1:exon:5770;Parent=Msa0105960-mRNA-1
chr1_3 exon 14841399 14841488 14841399 ID=Msa0105960-mRNA-1:exon:5771;Parent=Msa0105960-mRNA-1
chr1_3 CDS 14839899 14840053 14839899 ID=Msa0105960-mRNA-1:cds;Parent=Msa0105960-mRNA-1
chr1_3 CDS 14840111 14840334 14840111 ID=Msa0105960-mRNA-1:cds;Parent=Msa0105960-mRNA-1
chr1_3 CDS 14840347 14840546 14840347 ID=Msa0105960-mRNA-1:cds;Parent=Msa0105960-mRNA-1
chr1_3 CDS 14841399 14841488 14841399 ID=Msa0105960-mRNA-1:cds;Parent=Msa0105960-mRNA-1
Gene Sequence

>Msa0105960

ATGGATAGCTCTGATGATTCTGATTTTAATTTTGATGAGGATGGAGATAATGGGTATTCTACTTCTAGTGAAGACGATGAAAGTATAGAGTCTAGAGACCACGATGTCTCTGGTGATTACAATGAGAATTTGGATTCTTGTGTAATAGATGGTAGTGAAGAAGAGGCTTATGCCTTTTATCAAAAGTATGCAAAAAGCACCGGTTTCGTTGTTAGGAAAGATAAAGTGTACCGCAGCAAAGTTGGGAAACAAATTGTAATGCGACAGTTTGTGTGCAATAGAAATGGATTAAGAAGCAAAAAACACTTGACTAGGGTCAATAGGAAAAGAGAACATAGACCCCTCACCCGGAATAATTGTCCAGCTCGCCTTCGTATACAAAGCTTGAGATGGAGAGTGGTAATTTTTGAAGGGTGTCATAACCATGAACTAACCCCATCAAAATATATACATTTATTTCCTGCATATCGGGGATTGACGGATGCTGATAAAGCTCAAGTTGACAGTATGCAATCGTATGGTATCAAAACATGTCATATAATGGGGTACATGGTGGCAAACAAGGGTGGATATGATGCTAGTAATACCTCTGATCCGGTGTTGATAACTGGTCTGGATAATATTGAGAAAGATGCTGCAAAGATTTATACATCCGAGATATTCAAAAAA

Protein sequence

>Msa0105960

MDSSDDSDFNFDEDGDNGYSTSSEDDESIESRDHDVSGDYNENLDSCVIDGSEEEAYAFYQKYAKSTGFVVRKDKVYRSKVGKQIVMRQFVCNRNGLRSKKHLTRVNRKREHRPLTRNNCPARLRIQSLRWRVVIFEGCHNHELTPSKYIHLFPAYRGLTDADKAQVDSMQSYGIKTCHIMGYMVANKGGYDASNTSDPVLITGLDNIEKDAAKIYTSEIFKK