Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0105960 | XP_029126074.1 | 55.814 | 215 | 70 | 5 | 1 | 191 | 1 | 214 | 8.15e-61 | 216 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0105960 | sp|Q9SY66|FRS11_ARATH | 34.722 | 144 | 86 | 3 | 52 | 188 | 56 | 198 | 4.60e-17 | 82.8 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0105960 | A0A2Z6MDB1 | 60.274 | 146 | 53 | 2 | 52 | 193 | 13 | 157 | 1.35e-53 | 181 |
Gene ID | Type | Classification |
---|---|---|
Msa0105960 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0105960 | MtrunA17_Chr2g0287651 | 51.111 | 180 | 73 | 4 | 26 | 191 | 47 | 225 | 2.11e-50 | 175 |
Msa0105960 | MtrunA17_Chr1g0203051 | 36.620 | 142 | 85 | 2 | 54 | 191 | 89 | 229 | 7.18e-29 | 113 |
Msa0105960 | MtrunA17_Chr1g0171741 | 36.800 | 125 | 73 | 3 | 51 | 171 | 140 | 262 | 1.43e-22 | 92.4 |
Msa0105960 | MtrunA17_Chr5g0448761 | 34.028 | 144 | 90 | 2 | 52 | 190 | 68 | 211 | 4.17e-17 | 79.7 |
Msa0105960 | MtrunA17_Chr2g0276841 | 34.028 | 144 | 87 | 3 | 52 | 188 | 78 | 220 | 7.29e-17 | 79.0 |
Msa0105960 | MtrunA17_Chr1g0203721 | 36.054 | 147 | 87 | 4 | 52 | 193 | 71 | 215 | 7.51e-16 | 75.9 |
Msa0105960 | MtrunA17_Chr6g0458391 | 43.089 | 123 | 61 | 4 | 52 | 168 | 233 | 352 | 2.38e-15 | 74.3 |
Msa0105960 | MtrunA17_Chr6g0458391 | 33.065 | 124 | 77 | 2 | 52 | 172 | 99 | 219 | 6.60e-14 | 70.1 |
Msa0105960 | MtrunA17_Chr1g0198761 | 30.303 | 198 | 114 | 6 | 20 | 195 | 13 | 208 | 5.99e-14 | 70.5 |
Msa0105960 | MtrunA17_Chr3g0082121 | 29.121 | 182 | 108 | 4 | 27 | 192 | 17 | 193 | 2.24e-13 | 68.6 |
Msa0105960 | MtrunA17_Chr8g0363841 | 29.054 | 148 | 98 | 3 | 49 | 192 | 22 | 166 | 3.24e-13 | 68.2 |
Msa0105960 | MtrunA17_Chr2g0329421 | 36.000 | 100 | 58 | 2 | 52 | 148 | 35 | 131 | 3.80e-13 | 65.9 |
Msa0105960 | MtrunA17_Chr2g0329361 | 38.144 | 97 | 55 | 2 | 52 | 144 | 69 | 164 | 6.17e-13 | 65.9 |
Msa0105960 | MtrunA17_Chr5g0431001 | 29.577 | 142 | 87 | 4 | 52 | 181 | 69 | 209 | 1.18e-12 | 66.2 |
Msa0105960 | MtrunA17_Chr8g0389811 | 34.653 | 101 | 61 | 2 | 56 | 152 | 96 | 195 | 1.84e-12 | 63.9 |
Msa0105960 | MtrunA17_Chr2g0294841 | 25.789 | 190 | 128 | 4 | 13 | 189 | 10 | 199 | 3.39e-12 | 65.1 |
Msa0105960 | MtrunA17_Chr2g0290391 | 29.452 | 146 | 91 | 4 | 52 | 189 | 59 | 200 | 6.23e-12 | 64.3 |
Msa0105960 | MtrunA17_Chr1g0202341 | 29.268 | 164 | 106 | 4 | 49 | 205 | 52 | 212 | 8.47e-12 | 63.9 |
Msa0105960 | MtrunA17_Chr4g0033611 | 33.065 | 124 | 76 | 3 | 52 | 171 | 84 | 204 | 9.80e-12 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0105960 | AT1G10240.2 | 34.722 | 144 | 86 | 3 | 52 | 188 | 56 | 198 | 4.67e-18 | 82.8 |
Msa0105960 | AT1G10240.1 | 34.722 | 144 | 86 | 3 | 52 | 188 | 56 | 198 | 4.67e-18 | 82.8 |
Msa0105960 | AT4G38180.1 | 34.266 | 143 | 90 | 2 | 52 | 190 | 81 | 223 | 3.68e-17 | 80.1 |
Msa0105960 | AT5G28530.1 | 27.211 | 147 | 99 | 3 | 49 | 189 | 60 | 204 | 7.88e-12 | 64.7 |
Msa0105960 | AT5G28530.3 | 27.211 | 147 | 99 | 3 | 49 | 189 | 60 | 204 | 8.56e-12 | 64.3 |
Msa0105960 | AT5G28530.2 | 27.211 | 147 | 99 | 3 | 49 | 189 | 60 | 204 | 8.56e-12 | 64.3 |
Msa0105960 | AT3G59470.2 | 37.000 | 100 | 57 | 2 | 52 | 148 | 90 | 186 | 9.64e-12 | 63.2 |
Msa0105960 | AT5G28530.4 | 27.211 | 147 | 99 | 3 | 49 | 189 | 60 | 204 | 1.17e-11 | 63.9 |
Msa0105960 | AT5G28530.5 | 27.211 | 147 | 99 | 3 | 49 | 189 | 60 | 204 | 1.32e-11 | 63.9 |
Msa0105960 | AT3G59470.3 | 37.000 | 100 | 57 | 2 | 52 | 148 | 78 | 174 | 1.40e-11 | 62.8 |
Msa0105960 | AT3G59470.1 | 37.000 | 100 | 57 | 2 | 52 | 148 | 78 | 174 | 1.40e-11 | 62.8 |
Msa0105960 | AT3G07500.1 | 40.816 | 98 | 53 | 2 | 52 | 146 | 41 | 136 | 3.40e-11 | 61.2 |
Find 43 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGTGATTACAATGAGAATT+TGG | 0.226630 | 1_3:+14840009 | Msa0105960:CDS |
TACATTTATTTCCTGCATAT+CGG | 0.267468 | 1_3:+14840416 | Msa0105960:CDS |
TATCAAAACATGTCATATAA+TGG | 0.273332 | 1_3:+14840489 | Msa0105960:CDS |
TTTGATGAGGATGGAGATAA+TGG | 0.283559 | 1_3:+14839929 | Msa0105960:CDS |
AAAGCACCGGTTTCGTTGTT+AGG | 0.291848 | 1_3:+14840149 | Msa0105960:CDS |
ATCAAAACATGTCATATAAT+GGG | 0.298640 | 1_3:+14840490 | Msa0105960:CDS |
ACATTTATTTCCTGCATATC+GGG | 0.352320 | 1_3:+14840417 | Msa0105960:CDS |
GGCGAGCTGGACAATTATTC+CGG | 0.353940 | 1_3:-14840303 | None:intergenic |
TTGGATTCTTGTGTAATAGA+TGG | 0.384545 | 1_3:+14840028 | Msa0105960:CDS |
TCTGATCCGGTGTTGATAAC+TGG | 0.398541 | 1_3:+14841408 | Msa0105960:CDS |
CAGTTTGTGTGCAATAGAAA+TGG | 0.414838 | 1_3:+14840220 | Msa0105960:CDS |
AACACTTGACTAGGGTCAAT+AGG | 0.418818 | 1_3:+14840257 | Msa0105960:CDS |
ATCTTTCCTAACAACGAAAC+CGG | 0.440915 | 1_3:-14840155 | None:intergenic |
AAAGTGTACCGCAGCAAAGT+TGG | 0.448110 | 1_3:+14840178 | Msa0105960:CDS |
GGGGTACATGGTGGCAAACA+AGG | 0.461825 | 1_3:+14840510 | Msa0105960:CDS |
AAGTGTACCGCAGCAAAGTT+GGG | 0.465894 | 1_3:+14840179 | Msa0105960:CDS |
TCCGGTGTTGATAACTGGTC+TGG | 0.467260 | 1_3:+14841413 | Msa0105960:CDS |
GCGAGCTGGACAATTATTCC+GGG | 0.478461 | 1_3:-14840302 | None:intergenic |
TCCGTCAATCCCCGATATGC+AGG | 0.486078 | 1_3:-14840427 | None:intergenic |
TAAGAGTAATACCTCTGATC+CGG | 0.486946 | 1_3:+14841395 | Msa0105960:intron |
TCTAGAGACCACGATGTCTC+TGG | 0.494750 | 1_3:+14839989 | Msa0105960:CDS |
TCCTGCATATCGGGGATTGA+CGG | 0.498073 | 1_3:+14840426 | Msa0105960:CDS |
TTGATGAGGATGGAGATAAT+GGG | 0.498718 | 1_3:+14839930 | Msa0105960:CDS |
TAACGTATACGAAGGCGAGC+TGG | 0.516616 | 1_3:-14840316 | None:intergenic |
CTGGACAATTATTCCGGGTG+AGG | 0.532213 | 1_3:-14840297 | None:intergenic |
ATTCTTGTGTAATAGATGGT+AGG | 0.533148 | 1_3:+14840032 | Msa0105960:CDS |
ATGTCATATAATGGGGTACA+TGG | 0.556484 | 1_3:+14840498 | Msa0105960:CDS |
TGGACAATTATTCCGGGTGA+GGG | 0.565731 | 1_3:-14840296 | None:intergenic |
GAGAACATAGACCCCTCACC+CGG | 0.567472 | 1_3:+14840284 | Msa0105960:CDS |
GTTGACAGTATGCAATCGTA+TGG | 0.580581 | 1_3:+14840466 | Msa0105960:CDS |
CATTTATTTCCTGCATATCG+GGG | 0.582815 | 1_3:+14840418 | Msa0105960:CDS |
GGGTACATGGTGGCAAACAA+GGG | 0.589509 | 1_3:+14840511 | Msa0105960:CDS |
TACATGGTGGCAAACAAGGG+TGG | 0.611316 | 1_3:+14840514 | Msa0105960:CDS |
AGTTATCAACACCGGATCAG+AGG | 0.615238 | 1_3:-14841406 | None:intergenic |
CTGGATTATAACGTATACGA+AGG | 0.628678 | 1_3:-14840324 | None:intergenic |
TCCAGACCAGTTATCAACAC+CGG | 0.632781 | 1_3:-14841414 | None:intergenic |
ATAATCCAGAAAGCTTGAGA+TGG | 0.638128 | 1_3:+14840338 | Msa0105960:intron |
AGAAAGCTTGAGATGGAGAG+TGG | 0.639417 | 1_3:+14840345 | Msa0105960:intron |
GGACAATTATTCCGGGTGAG+GGG | 0.643647 | 1_3:-14840295 | None:intergenic |
TCAAAACATGTCATATAATG+GGG | 0.649125 | 1_3:+14840491 | Msa0105960:CDS |
TCATATAATGGGGTACATGG+TGG | 0.662255 | 1_3:+14840501 | Msa0105960:CDS |
TTTGTTTCCCAACTTTGCTG+CGG | 0.666357 | 1_3:-14840186 | None:intergenic |
TGTAATCACCAGAGACATCG+TGG | 0.695321 | 1_3:-14839997 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATAAATGTATATATTTTGAT+GGG | - | chr1_3:14840405-14840424 | None:intergenic | 10.0% |
!!! | AATAAATGTATATATTTTGA+TGG | - | chr1_3:14840406-14840425 | None:intergenic | 10.0% |
!!! | ATAAATGTATATATTTTGAT+GGG | - | chr1_3:14840405-14840424 | None:intergenic | 10.0% |
!!! | AATAAATGTATATATTTTGA+TGG | - | chr1_3:14840406-14840425 | None:intergenic | 10.0% |
!!! | TAAATGTATATATTTTGATG+GGG | - | chr1_3:14840404-14840423 | None:intergenic | 15.0% |
!!! | AAAGATTTGTATAACTATTT+TGG | + | chr1_3:14840562-14840581 | Msa0105960:intron | 15.0% |
!!! | TCATATTTTACATATAACAT+AGG | - | chr1_3:14840667-14840686 | None:intergenic | 15.0% |
!! | TTATATGTAAAATATGAGAA+GGG | + | chr1_3:14840670-14840689 | Msa0105960:intron | 15.0% |
!!! | TAAATGTATATATTTTGATG+GGG | - | chr1_3:14840404-14840423 | None:intergenic | 15.0% |
!!! | AAAGATTTGTATAACTATTT+TGG | + | chr1_3:14840562-14840581 | Msa0105960:intron | 15.0% |
!!! | TCATATTTTACATATAACAT+AGG | - | chr1_3:14840667-14840686 | None:intergenic | 15.0% |
!! | TTATATGTAAAATATGAGAA+GGG | + | chr1_3:14840670-14840689 | Msa0105960:intron | 15.0% |
!!! | TTCTGATTTTAATTTTGATG+AGG | + | chr1_3:14839916-14839935 | Msa0105960:CDS | 20.0% |
!!! | GATATTATGAATCTTGATTT+TGG | + | chr1_3:14840085-14840104 | Msa0105960:intron | 20.0% |
!!! | TTTTGCATACTTTTGATAAA+AGG | - | chr1_3:14840131-14840150 | None:intergenic | 20.0% |
!! | TATCAAAACATGTCATATAA+TGG | + | chr1_3:14840489-14840508 | Msa0105960:CDS | 20.0% |
!! | ATCAAAACATGTCATATAAT+GGG | + | chr1_3:14840490-14840509 | Msa0105960:CDS | 20.0% |
!! | GTTATATGTAAAATATGAGA+AGG | + | chr1_3:14840669-14840688 | Msa0105960:intron | 20.0% |
!!! | GTATTTATTTTTCTTGTATG+TGG | - | chr1_3:14840785-14840804 | None:intergenic | 20.0% |
!! | AAATAAATACAATCTTCCTT+TGG | + | chr1_3:14840795-14840814 | Msa0105960:intron | 20.0% |
!!! | ATTCACAAACGATTATTTTT+GGG | + | chr1_3:14840842-14840861 | Msa0105960:intron | 20.0% |
!!! | TTCTGATTTTAATTTTGATG+AGG | + | chr1_3:14839916-14839935 | Msa0105960:CDS | 20.0% |
!!! | GATATTATGAATCTTGATTT+TGG | + | chr1_3:14840085-14840104 | Msa0105960:intron | 20.0% |
!!! | TTTTGCATACTTTTGATAAA+AGG | - | chr1_3:14840131-14840150 | None:intergenic | 20.0% |
!! | TATCAAAACATGTCATATAA+TGG | + | chr1_3:14840489-14840508 | Msa0105960:CDS | 20.0% |
!! | ATCAAAACATGTCATATAAT+GGG | + | chr1_3:14840490-14840509 | Msa0105960:CDS | 20.0% |
!! | GTTATATGTAAAATATGAGA+AGG | + | chr1_3:14840669-14840688 | Msa0105960:intron | 20.0% |
!!! | GTATTTATTTTTCTTGTATG+TGG | - | chr1_3:14840785-14840804 | None:intergenic | 20.0% |
!! | AAATAAATACAATCTTCCTT+TGG | + | chr1_3:14840795-14840814 | Msa0105960:intron | 20.0% |
!!! | ATTCACAAACGATTATTTTT+GGG | + | chr1_3:14840842-14840861 | Msa0105960:intron | 20.0% |
!!! | GATTTTAATTTTGATGAGGA+TGG | + | chr1_3:14839920-14839939 | Msa0105960:CDS | 25.0% |
! | TGTTAAGATTAATACCATGA+CGG | + | chr1_3:14840057-14840076 | Msa0105960:intron | 25.0% |
! | TACATTTATTTCCTGCATAT+CGG | + | chr1_3:14840416-14840435 | Msa0105960:CDS | 25.0% |
! | TCAAAACATGTCATATAATG+GGG | + | chr1_3:14840491-14840510 | Msa0105960:CDS | 25.0% |
!!! | TAACTATTTTGGCAAGAAAA+TGG | + | chr1_3:14840573-14840592 | Msa0105960:intron | 25.0% |
!!! | AACTATTTTGGCAAGAAAAT+GGG | + | chr1_3:14840574-14840593 | Msa0105960:intron | 25.0% |
!!! | ATGGGTATTGATATTAAAGA+TGG | + | chr1_3:14840592-14840611 | Msa0105960:intron | 25.0% |
!! | GGAAATTGAAAAGATTGTTT+TGG | + | chr1_3:14840701-14840720 | Msa0105960:intron | 25.0% |
!!! | CGAAATGATTTTTTGTGTTT+TGG | + | chr1_3:14840739-14840758 | Msa0105960:intron | 25.0% |
! | CAAAAATAATCGTTTGTGAA+TGG | - | chr1_3:14840843-14840862 | None:intergenic | 25.0% |
!! | CATTCACAAACGATTATTTT+TGG | + | chr1_3:14840841-14840860 | Msa0105960:intron | 25.0% |
!!! | TTCACAAACGATTATTTTTG+GGG | + | chr1_3:14840843-14840862 | Msa0105960:intron | 25.0% |
! | AAACAATAGAGACATATACA+TGG | + | chr1_3:14840884-14840903 | Msa0105960:intron | 25.0% |
! | AACAATAGAGACATATACAT+GGG | + | chr1_3:14840885-14840904 | Msa0105960:intron | 25.0% |
!!! | TACTTTCGAGATAAGTTTTT+TGG | + | chr1_3:14841228-14841247 | Msa0105960:intron | 25.0% |
!!! | GATTTTAATTTTGATGAGGA+TGG | + | chr1_3:14839920-14839939 | Msa0105960:CDS | 25.0% |
! | TGTTAAGATTAATACCATGA+CGG | + | chr1_3:14840057-14840076 | Msa0105960:intron | 25.0% |
! | TACATTTATTTCCTGCATAT+CGG | + | chr1_3:14840416-14840435 | Msa0105960:CDS | 25.0% |
! | TCAAAACATGTCATATAATG+GGG | + | chr1_3:14840491-14840510 | Msa0105960:CDS | 25.0% |
!!! | TAACTATTTTGGCAAGAAAA+TGG | + | chr1_3:14840573-14840592 | Msa0105960:intron | 25.0% |
!!! | AACTATTTTGGCAAGAAAAT+GGG | + | chr1_3:14840574-14840593 | Msa0105960:intron | 25.0% |
!!! | ATGGGTATTGATATTAAAGA+TGG | + | chr1_3:14840592-14840611 | Msa0105960:intron | 25.0% |
!! | GGAAATTGAAAAGATTGTTT+TGG | + | chr1_3:14840701-14840720 | Msa0105960:intron | 25.0% |
!!! | CGAAATGATTTTTTGTGTTT+TGG | + | chr1_3:14840739-14840758 | Msa0105960:intron | 25.0% |
! | CAAAAATAATCGTTTGTGAA+TGG | - | chr1_3:14840843-14840862 | None:intergenic | 25.0% |
!! | CATTCACAAACGATTATTTT+TGG | + | chr1_3:14840841-14840860 | Msa0105960:intron | 25.0% |
!!! | TTCACAAACGATTATTTTTG+GGG | + | chr1_3:14840843-14840862 | Msa0105960:intron | 25.0% |
! | AAACAATAGAGACATATACA+TGG | + | chr1_3:14840884-14840903 | Msa0105960:intron | 25.0% |
! | AACAATAGAGACATATACAT+GGG | + | chr1_3:14840885-14840904 | Msa0105960:intron | 25.0% |
!!! | TACTTTCGAGATAAGTTTTT+TGG | + | chr1_3:14841228-14841247 | Msa0105960:intron | 25.0% |
TGGTGATTACAATGAGAATT+TGG | + | chr1_3:14840009-14840028 | Msa0105960:CDS | 30.0% | |
TTGGATTCTTGTGTAATAGA+TGG | + | chr1_3:14840028-14840047 | Msa0105960:CDS | 30.0% | |
ATTCTTGTGTAATAGATGGT+AGG | + | chr1_3:14840032-14840051 | Msa0105960:CDS | 30.0% | |
AAGCAAAAAACACTTGACTA+GGG | + | chr1_3:14840249-14840268 | Msa0105960:CDS | 30.0% | |
ACATTTATTTCCTGCATATC+GGG | + | chr1_3:14840417-14840436 | Msa0105960:CDS | 30.0% | |
! | CAATCTTTTCAATTTCCCAT+TGG | - | chr1_3:14840698-14840717 | None:intergenic | 30.0% |
!!! | AAAAGATTGTTTTGGACAGA+TGG | + | chr1_3:14840709-14840728 | Msa0105960:intron | 30.0% |
! | AATTCGTTTCTAGAAGCAAT+GGG | + | chr1_3:14840913-14840932 | Msa0105960:intron | 30.0% |
TTTCAAGAAAGCAATGTACT+CGG | + | chr1_3:14841089-14841108 | Msa0105960:intron | 30.0% | |
AAAACTCTTCAAATTCCTCT+GGG | - | chr1_3:14841122-14841141 | None:intergenic | 30.0% | |
! | AGAGGAATTTGAAGAGTTTT+GGG | + | chr1_3:14841122-14841141 | Msa0105960:intron | 30.0% |
!! | TTCTAAAACATACGAGAACA+AGG | + | chr1_3:14841188-14841207 | Msa0105960:intron | 30.0% |
ATACGAGAACAAGGAATTAT+GGG | + | chr1_3:14841197-14841216 | Msa0105960:intron | 30.0% | |
! | AAACTTATCTCGAAAGTATG+CGG | - | chr1_3:14841226-14841245 | None:intergenic | 30.0% |
!!! | ATAAGTTTTTTGGTCGCATA+CGG | + | chr1_3:14841238-14841257 | Msa0105960:intron | 30.0% |
TGGTGATTACAATGAGAATT+TGG | + | chr1_3:14840009-14840028 | Msa0105960:CDS | 30.0% | |
TTGGATTCTTGTGTAATAGA+TGG | + | chr1_3:14840028-14840047 | Msa0105960:CDS | 30.0% | |
ATTCTTGTGTAATAGATGGT+AGG | + | chr1_3:14840032-14840051 | Msa0105960:CDS | 30.0% | |
AAGCAAAAAACACTTGACTA+GGG | + | chr1_3:14840249-14840268 | Msa0105960:CDS | 30.0% | |
ACATTTATTTCCTGCATATC+GGG | + | chr1_3:14840417-14840436 | Msa0105960:CDS | 30.0% | |
! | CAATCTTTTCAATTTCCCAT+TGG | - | chr1_3:14840698-14840717 | None:intergenic | 30.0% |
!!! | AAAAGATTGTTTTGGACAGA+TGG | + | chr1_3:14840709-14840728 | Msa0105960:intron | 30.0% |
! | AATTCGTTTCTAGAAGCAAT+GGG | + | chr1_3:14840913-14840932 | Msa0105960:intron | 30.0% |
TTTCAAGAAAGCAATGTACT+CGG | + | chr1_3:14841089-14841108 | Msa0105960:intron | 30.0% | |
AAAACTCTTCAAATTCCTCT+GGG | - | chr1_3:14841122-14841141 | None:intergenic | 30.0% | |
! | AGAGGAATTTGAAGAGTTTT+GGG | + | chr1_3:14841122-14841141 | Msa0105960:intron | 30.0% |
!! | TTCTAAAACATACGAGAACA+AGG | + | chr1_3:14841188-14841207 | Msa0105960:intron | 30.0% |
ATACGAGAACAAGGAATTAT+GGG | + | chr1_3:14841197-14841216 | Msa0105960:intron | 30.0% | |
! | AAACTTATCTCGAAAGTATG+CGG | - | chr1_3:14841226-14841245 | None:intergenic | 30.0% |
!!! | ATAAGTTTTTTGGTCGCATA+CGG | + | chr1_3:14841238-14841257 | Msa0105960:intron | 30.0% |
TTTGATGAGGATGGAGATAA+TGG | + | chr1_3:14839929-14839948 | Msa0105960:CDS | 35.0% | |
TTGATGAGGATGGAGATAAT+GGG | + | chr1_3:14839930-14839949 | Msa0105960:CDS | 35.0% | |
TAAGATTAATACCATGACGG+CGG | + | chr1_3:14840060-14840079 | Msa0105960:intron | 35.0% | |
! | CAAAAGTATGCAAAAAGCAC+CGG | + | chr1_3:14840136-14840155 | Msa0105960:CDS | 35.0% |
ATCTTTCCTAACAACGAAAC+CGG | - | chr1_3:14840158-14840177 | None:intergenic | 35.0% | |
CAGTTTGTGTGCAATAGAAA+TGG | + | chr1_3:14840220-14840239 | Msa0105960:CDS | 35.0% | |
GAAGCAAAAAACACTTGACT+AGG | + | chr1_3:14840248-14840267 | Msa0105960:CDS | 35.0% | |
CTGGATTATAACGTATACGA+AGG | - | chr1_3:14840327-14840346 | None:intergenic | 35.0% | |
ATAATCCAGAAAGCTTGAGA+TGG | + | chr1_3:14840338-14840357 | Msa0105960:intron | 35.0% | |
! | TGGAGAGTGGTAATTTTTGA+AGG | + | chr1_3:14840358-14840377 | Msa0105960:CDS | 35.0% |
! | GGAGAGTGGTAATTTTTGAA+GGG | + | chr1_3:14840359-14840378 | Msa0105960:CDS | 35.0% |
!!! | ATTTTGATGGGGTTAGTTCA+TGG | - | chr1_3:14840393-14840412 | None:intergenic | 35.0% |
CATTTATTTCCTGCATATCG+GGG | + | chr1_3:14840418-14840437 | Msa0105960:CDS | 35.0% | |
! | ATGTCATATAATGGGGTACA+TGG | + | chr1_3:14840498-14840517 | Msa0105960:CDS | 35.0% |
TTGCTTCTCTAAGCTATCTT+CGG | + | chr1_3:14840623-14840642 | Msa0105960:intron | 35.0% | |
!! | AAATATGAGAAGGGTACCAA+TGG | + | chr1_3:14840679-14840698 | Msa0105960:intron | 35.0% |
!! | AATATGAGAAGGGTACCAAT+GGG | + | chr1_3:14840680-14840699 | Msa0105960:intron | 35.0% |
! | CTTCCTTTGGTAATATTCTC+TGG | + | chr1_3:14840808-14840827 | Msa0105960:intron | 35.0% |
! | GAATTCGTTTCTAGAAGCAA+TGG | + | chr1_3:14840912-14840931 | Msa0105960:intron | 35.0% |
AAACTCTTCAAATTCCTCTG+GGG | - | chr1_3:14841121-14841140 | None:intergenic | 35.0% | |
CAAAACTCTTCAAATTCCTC+TGG | - | chr1_3:14841123-14841142 | None:intergenic | 35.0% | |
! | CAGAGGAATTTGAAGAGTTT+TGG | + | chr1_3:14841121-14841140 | Msa0105960:intron | 35.0% |
CATACGAGAACAAGGAATTA+TGG | + | chr1_3:14841196-14841215 | Msa0105960:intron | 35.0% | |
TTCTATACTCTCTCAATGTG+TGG | - | chr1_3:14841353-14841372 | None:intergenic | 35.0% | |
TAAGAGTAATACCTCTGATC+CGG | + | chr1_3:14841395-14841414 | Msa0105960:intron | 35.0% | |
TTTGATGAGGATGGAGATAA+TGG | + | chr1_3:14839929-14839948 | Msa0105960:CDS | 35.0% | |
TTGATGAGGATGGAGATAAT+GGG | + | chr1_3:14839930-14839949 | Msa0105960:CDS | 35.0% | |
TAAGATTAATACCATGACGG+CGG | + | chr1_3:14840060-14840079 | Msa0105960:intron | 35.0% | |
! | CAAAAGTATGCAAAAAGCAC+CGG | + | chr1_3:14840136-14840155 | Msa0105960:CDS | 35.0% |
ATCTTTCCTAACAACGAAAC+CGG | - | chr1_3:14840158-14840177 | None:intergenic | 35.0% | |
CAGTTTGTGTGCAATAGAAA+TGG | + | chr1_3:14840220-14840239 | Msa0105960:CDS | 35.0% | |
GAAGCAAAAAACACTTGACT+AGG | + | chr1_3:14840248-14840267 | Msa0105960:CDS | 35.0% | |
CTGGATTATAACGTATACGA+AGG | - | chr1_3:14840327-14840346 | None:intergenic | 35.0% | |
ATAATCCAGAAAGCTTGAGA+TGG | + | chr1_3:14840338-14840357 | Msa0105960:intron | 35.0% | |
! | TGGAGAGTGGTAATTTTTGA+AGG | + | chr1_3:14840358-14840377 | Msa0105960:CDS | 35.0% |
! | GGAGAGTGGTAATTTTTGAA+GGG | + | chr1_3:14840359-14840378 | Msa0105960:CDS | 35.0% |
!!! | ATTTTGATGGGGTTAGTTCA+TGG | - | chr1_3:14840393-14840412 | None:intergenic | 35.0% |
CATTTATTTCCTGCATATCG+GGG | + | chr1_3:14840418-14840437 | Msa0105960:CDS | 35.0% | |
! | ATGTCATATAATGGGGTACA+TGG | + | chr1_3:14840498-14840517 | Msa0105960:CDS | 35.0% |
TTGCTTCTCTAAGCTATCTT+CGG | + | chr1_3:14840623-14840642 | Msa0105960:intron | 35.0% | |
!! | AAATATGAGAAGGGTACCAA+TGG | + | chr1_3:14840679-14840698 | Msa0105960:intron | 35.0% |
!! | AATATGAGAAGGGTACCAAT+GGG | + | chr1_3:14840680-14840699 | Msa0105960:intron | 35.0% |
! | CTTCCTTTGGTAATATTCTC+TGG | + | chr1_3:14840808-14840827 | Msa0105960:intron | 35.0% |
! | GAATTCGTTTCTAGAAGCAA+TGG | + | chr1_3:14840912-14840931 | Msa0105960:intron | 35.0% |
AAACTCTTCAAATTCCTCTG+GGG | - | chr1_3:14841121-14841140 | None:intergenic | 35.0% | |
CAAAACTCTTCAAATTCCTC+TGG | - | chr1_3:14841123-14841142 | None:intergenic | 35.0% | |
! | CAGAGGAATTTGAAGAGTTT+TGG | + | chr1_3:14841121-14841140 | Msa0105960:intron | 35.0% |
CATACGAGAACAAGGAATTA+TGG | + | chr1_3:14841196-14841215 | Msa0105960:intron | 35.0% | |
TTCTATACTCTCTCAATGTG+TGG | - | chr1_3:14841353-14841372 | None:intergenic | 35.0% | |
TAAGAGTAATACCTCTGATC+CGG | + | chr1_3:14841395-14841414 | Msa0105960:intron | 35.0% | |
!! | TGATTTTGGCAGTGAAGAAG+AGG | + | chr1_3:14840099-14840118 | Msa0105960:intron | 40.0% |
TTTGTTTCCCAACTTTGCTG+CGG | - | chr1_3:14840189-14840208 | None:intergenic | 40.0% | |
AACACTTGACTAGGGTCAAT+AGG | + | chr1_3:14840257-14840276 | Msa0105960:CDS | 40.0% | |
GTTGACAGTATGCAATCGTA+TGG | + | chr1_3:14840466-14840485 | Msa0105960:CDS | 40.0% | |
! | TCATATAATGGGGTACATGG+TGG | + | chr1_3:14840501-14840520 | Msa0105960:CDS | 40.0% |
TGCTTCTCTAAGCTATCTTC+GGG | + | chr1_3:14840624-14840643 | Msa0105960:intron | 40.0% | |
!!! | GATTGTTTTGGACAGATGGA+TGG | + | chr1_3:14840713-14840732 | Msa0105960:intron | 40.0% |
CAGCCAGAGAATATTACCAA+AGG | - | chr1_3:14840814-14840833 | None:intergenic | 40.0% | |
!!! | GATTATTTTTGGGGCTGCTT+TGG | + | chr1_3:14840852-14840871 | Msa0105960:intron | 40.0% |
! | TGATGGTGACATGTCTATGA+GGG | + | chr1_3:14840963-14840982 | Msa0105960:intron | 40.0% |
CACAGTCTGTGAAATGCTTT+GGG | - | chr1_3:14841009-14841028 | None:intergenic | 40.0% | |
ACACAGTCTGTGAAATGCTT+TGG | - | chr1_3:14841010-14841029 | None:intergenic | 40.0% | |
TGAGCTACAGGGTAACAATT+GGG | + | chr1_3:14841164-14841183 | Msa0105960:intron | 40.0% | |
ATTGATTGCTTCACACTGAG+AGG | - | chr1_3:14841268-14841287 | None:intergenic | 40.0% | |
ATGTGTGGTCAAAGTTATGC+AGG | - | chr1_3:14841338-14841357 | None:intergenic | 40.0% | |
!! | TGATTTTGGCAGTGAAGAAG+AGG | + | chr1_3:14840099-14840118 | Msa0105960:intron | 40.0% |
TTTGTTTCCCAACTTTGCTG+CGG | - | chr1_3:14840189-14840208 | None:intergenic | 40.0% | |
AACACTTGACTAGGGTCAAT+AGG | + | chr1_3:14840257-14840276 | Msa0105960:CDS | 40.0% | |
GTTGACAGTATGCAATCGTA+TGG | + | chr1_3:14840466-14840485 | Msa0105960:CDS | 40.0% | |
! | TCATATAATGGGGTACATGG+TGG | + | chr1_3:14840501-14840520 | Msa0105960:CDS | 40.0% |
TGCTTCTCTAAGCTATCTTC+GGG | + | chr1_3:14840624-14840643 | Msa0105960:intron | 40.0% | |
!!! | GATTGTTTTGGACAGATGGA+TGG | + | chr1_3:14840713-14840732 | Msa0105960:intron | 40.0% |
CAGCCAGAGAATATTACCAA+AGG | - | chr1_3:14840814-14840833 | None:intergenic | 40.0% | |
!!! | GATTATTTTTGGGGCTGCTT+TGG | + | chr1_3:14840852-14840871 | Msa0105960:intron | 40.0% |
! | TGATGGTGACATGTCTATGA+GGG | + | chr1_3:14840963-14840982 | Msa0105960:intron | 40.0% |
CACAGTCTGTGAAATGCTTT+GGG | - | chr1_3:14841009-14841028 | None:intergenic | 40.0% | |
ACACAGTCTGTGAAATGCTT+TGG | - | chr1_3:14841010-14841029 | None:intergenic | 40.0% | |
TGAGCTACAGGGTAACAATT+GGG | + | chr1_3:14841164-14841183 | Msa0105960:intron | 40.0% | |
ATTGATTGCTTCACACTGAG+AGG | - | chr1_3:14841268-14841287 | None:intergenic | 40.0% | |
ATGTGTGGTCAAAGTTATGC+AGG | - | chr1_3:14841338-14841357 | None:intergenic | 40.0% | |
TGTAATCACCAGAGACATCG+TGG | - | chr1_3:14840000-14840019 | None:intergenic | 45.0% | |
CATAATATCATCCGCCGTCA+TGG | - | chr1_3:14840074-14840093 | None:intergenic | 45.0% | |
!! | AAAGCACCGGTTTCGTTGTT+AGG | + | chr1_3:14840149-14840168 | Msa0105960:CDS | 45.0% |
AAAGTGTACCGCAGCAAAGT+TGG | + | chr1_3:14840178-14840197 | Msa0105960:CDS | 45.0% | |
AAGTGTACCGCAGCAAAGTT+GGG | + | chr1_3:14840179-14840198 | Msa0105960:CDS | 45.0% | |
TGGACAATTATTCCGGGTGA+GGG | - | chr1_3:14840299-14840318 | None:intergenic | 45.0% | |
ACTCTCCATCTCAAGCTTTC+TGG | - | chr1_3:14840346-14840365 | None:intergenic | 45.0% | |
AGAAAGCTTGAGATGGAGAG+TGG | + | chr1_3:14840345-14840364 | Msa0105960:intron | 45.0% | |
AAGGGTGGATATGATGCTGT+TGG | + | chr1_3:14840529-14840548 | Msa0105960:intron | 45.0% | |
GCTTCTCTAAGCTATCTTCG+GGG | + | chr1_3:14840625-14840644 | Msa0105960:intron | 45.0% | |
CTTCTCTAAGCTATCTTCGG+GGG | + | chr1_3:14840626-14840645 | Msa0105960:intron | 45.0% | |
! | CCATCAGTCACTACTGCTTT+TGG | - | chr1_3:14840949-14840968 | None:intergenic | 45.0% |
CCAAAAGCAGTAGTGACTGA+TGG | + | chr1_3:14840946-14840965 | Msa0105960:intron | 45.0% | |
! | CTGATGGTGACATGTCTATG+AGG | + | chr1_3:14840962-14840981 | Msa0105960:intron | 45.0% |
AGCATTCTTGTGCAAATGCC+AGG | - | chr1_3:14841034-14841053 | None:intergenic | 45.0% | |
TGTTGAGATGAGTGAGCTAC+AGG | + | chr1_3:14841152-14841171 | Msa0105960:intron | 45.0% | |
GTTGAGATGAGTGAGCTACA+GGG | + | chr1_3:14841153-14841172 | Msa0105960:intron | 45.0% | |
GTGAGCTACAGGGTAACAAT+TGG | + | chr1_3:14841163-14841182 | Msa0105960:intron | 45.0% | |
AGTTATCAACACCGGATCAG+AGG | - | chr1_3:14841409-14841428 | None:intergenic | 45.0% | |
!! | TCTGATCCGGTGTTGATAAC+TGG | + | chr1_3:14841408-14841427 | Msa0105960:CDS | 45.0% |
TCCAGACCAGTTATCAACAC+CGG | - | chr1_3:14841417-14841436 | None:intergenic | 45.0% | |
TGTAATCACCAGAGACATCG+TGG | - | chr1_3:14840000-14840019 | None:intergenic | 45.0% | |
CATAATATCATCCGCCGTCA+TGG | - | chr1_3:14840074-14840093 | None:intergenic | 45.0% | |
!! | AAAGCACCGGTTTCGTTGTT+AGG | + | chr1_3:14840149-14840168 | Msa0105960:CDS | 45.0% |
AAAGTGTACCGCAGCAAAGT+TGG | + | chr1_3:14840178-14840197 | Msa0105960:CDS | 45.0% | |
AAGTGTACCGCAGCAAAGTT+GGG | + | chr1_3:14840179-14840198 | Msa0105960:CDS | 45.0% | |
TGGACAATTATTCCGGGTGA+GGG | - | chr1_3:14840299-14840318 | None:intergenic | 45.0% | |
ACTCTCCATCTCAAGCTTTC+TGG | - | chr1_3:14840346-14840365 | None:intergenic | 45.0% | |
AGAAAGCTTGAGATGGAGAG+TGG | + | chr1_3:14840345-14840364 | Msa0105960:intron | 45.0% | |
AAGGGTGGATATGATGCTGT+TGG | + | chr1_3:14840529-14840548 | Msa0105960:intron | 45.0% | |
GCTTCTCTAAGCTATCTTCG+GGG | + | chr1_3:14840625-14840644 | Msa0105960:intron | 45.0% | |
CTTCTCTAAGCTATCTTCGG+GGG | + | chr1_3:14840626-14840645 | Msa0105960:intron | 45.0% | |
! | CCATCAGTCACTACTGCTTT+TGG | - | chr1_3:14840949-14840968 | None:intergenic | 45.0% |
CCAAAAGCAGTAGTGACTGA+TGG | + | chr1_3:14840946-14840965 | Msa0105960:intron | 45.0% | |
! | CTGATGGTGACATGTCTATG+AGG | + | chr1_3:14840962-14840981 | Msa0105960:intron | 45.0% |
AGCATTCTTGTGCAAATGCC+AGG | - | chr1_3:14841034-14841053 | None:intergenic | 45.0% | |
TGTTGAGATGAGTGAGCTAC+AGG | + | chr1_3:14841152-14841171 | Msa0105960:intron | 45.0% | |
GTTGAGATGAGTGAGCTACA+GGG | + | chr1_3:14841153-14841172 | Msa0105960:intron | 45.0% | |
GTGAGCTACAGGGTAACAAT+TGG | + | chr1_3:14841163-14841182 | Msa0105960:intron | 45.0% | |
AGTTATCAACACCGGATCAG+AGG | - | chr1_3:14841409-14841428 | None:intergenic | 45.0% | |
!! | TCTGATCCGGTGTTGATAAC+TGG | + | chr1_3:14841408-14841427 | Msa0105960:CDS | 45.0% |
TCCAGACCAGTTATCAACAC+CGG | - | chr1_3:14841417-14841436 | None:intergenic | 45.0% | |
TCTAGAGACCACGATGTCTC+TGG | + | chr1_3:14839989-14840008 | Msa0105960:CDS | 50.0% | |
GGACAATTATTCCGGGTGAG+GGG | - | chr1_3:14840298-14840317 | None:intergenic | 50.0% | |
CTGGACAATTATTCCGGGTG+AGG | - | chr1_3:14840300-14840319 | None:intergenic | 50.0% | |
GCGAGCTGGACAATTATTCC+GGG | - | chr1_3:14840305-14840324 | None:intergenic | 50.0% | |
GGCGAGCTGGACAATTATTC+CGG | - | chr1_3:14840306-14840325 | None:intergenic | 50.0% | |
TAACGTATACGAAGGCGAGC+TGG | - | chr1_3:14840319-14840338 | None:intergenic | 50.0% | |
TCCTGCATATCGGGGATTGA+CGG | + | chr1_3:14840426-14840445 | Msa0105960:CDS | 50.0% | |
GGGTACATGGTGGCAAACAA+GGG | + | chr1_3:14840511-14840530 | Msa0105960:CDS | 50.0% | |
TACATGGTGGCAAACAAGGG+TGG | + | chr1_3:14840514-14840533 | Msa0105960:CDS | 50.0% | |
TCTAAGCTATCTTCGGGGGA+AGG | + | chr1_3:14840630-14840649 | Msa0105960:intron | 50.0% | |
CATTTCACAGACTGTGTGCC+TGG | + | chr1_3:14841013-14841032 | Msa0105960:intron | 50.0% | |
!! | TCCGGTGTTGATAACTGGTC+TGG | + | chr1_3:14841413-14841432 | Msa0105960:CDS | 50.0% |
TCTAGAGACCACGATGTCTC+TGG | + | chr1_3:14839989-14840008 | Msa0105960:CDS | 50.0% | |
GGACAATTATTCCGGGTGAG+GGG | - | chr1_3:14840298-14840317 | None:intergenic | 50.0% | |
CTGGACAATTATTCCGGGTG+AGG | - | chr1_3:14840300-14840319 | None:intergenic | 50.0% | |
GCGAGCTGGACAATTATTCC+GGG | - | chr1_3:14840305-14840324 | None:intergenic | 50.0% | |
GGCGAGCTGGACAATTATTC+CGG | - | chr1_3:14840306-14840325 | None:intergenic | 50.0% | |
TAACGTATACGAAGGCGAGC+TGG | - | chr1_3:14840319-14840338 | None:intergenic | 50.0% | |
TCCTGCATATCGGGGATTGA+CGG | + | chr1_3:14840426-14840445 | Msa0105960:CDS | 50.0% | |
GGGTACATGGTGGCAAACAA+GGG | + | chr1_3:14840511-14840530 | Msa0105960:CDS | 50.0% | |
TACATGGTGGCAAACAAGGG+TGG | + | chr1_3:14840514-14840533 | Msa0105960:CDS | 50.0% | |
TCTAAGCTATCTTCGGGGGA+AGG | + | chr1_3:14840630-14840649 | Msa0105960:intron | 50.0% | |
CATTTCACAGACTGTGTGCC+TGG | + | chr1_3:14841013-14841032 | Msa0105960:intron | 50.0% | |
!! | TCCGGTGTTGATAACTGGTC+TGG | + | chr1_3:14841413-14841432 | Msa0105960:CDS | 50.0% |
GAGAACATAGACCCCTCACC+CGG | + | chr1_3:14840284-14840303 | Msa0105960:CDS | 55.0% | |
TCCGTCAATCCCCGATATGC+AGG | - | chr1_3:14840430-14840449 | None:intergenic | 55.0% | |
GGGGTACATGGTGGCAAACA+AGG | + | chr1_3:14840510-14840529 | Msa0105960:CDS | 55.0% | |
AAGCTATCTTCGGGGGAAGG+CGG | + | chr1_3:14840633-14840652 | Msa0105960:intron | 55.0% | |
GTACTCGGATTTCACCCCAG+AGG | + | chr1_3:14841104-14841123 | Msa0105960:intron | 55.0% | |
GAGAACATAGACCCCTCACC+CGG | + | chr1_3:14840284-14840303 | Msa0105960:CDS | 55.0% | |
TCCGTCAATCCCCGATATGC+AGG | - | chr1_3:14840430-14840449 | None:intergenic | 55.0% | |
GGGGTACATGGTGGCAAACA+AGG | + | chr1_3:14840510-14840529 | Msa0105960:CDS | 55.0% | |
AAGCTATCTTCGGGGGAAGG+CGG | + | chr1_3:14840633-14840652 | Msa0105960:intron | 55.0% | |
GTACTCGGATTTCACCCCAG+AGG | + | chr1_3:14841104-14841123 | Msa0105960:intron | 55.0% | |
AGCTATCTTCGGGGGAAGGC+GGG | + | chr1_3:14840634-14840653 | Msa0105960:intron | 60.0% | |
AGCTATCTTCGGGGGAAGGC+GGG | + | chr1_3:14840634-14840653 | Msa0105960:intron | 60.0% | |
! | TCTTCGGGGGAAGGCGGGCT+TGG | + | chr1_3:14840639-14840658 | Msa0105960:intron | 70.0% |
! | TCTTCGGGGGAAGGCGGGCT+TGG | + | chr1_3:14840639-14840658 | Msa0105960:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_3 | gene | 14839899 | 14841488 | 14839899 | ID=Msa0105960;Name=Msa0105960 |
chr1_3 | mRNA | 14839899 | 14841488 | 14839899 | ID=Msa0105960-mRNA-1;Parent=Msa0105960;Name=Msa0105960-mRNA-1;_AED=0.24;_eAED=0.31;_QI=0|0|0|1|0|0.25|4|0|223 |
chr1_3 | exon | 14839899 | 14840053 | 14839899 | ID=Msa0105960-mRNA-1:exon:5768;Parent=Msa0105960-mRNA-1 |
chr1_3 | exon | 14840111 | 14840334 | 14840111 | ID=Msa0105960-mRNA-1:exon:5769;Parent=Msa0105960-mRNA-1 |
chr1_3 | exon | 14840347 | 14840546 | 14840347 | ID=Msa0105960-mRNA-1:exon:5770;Parent=Msa0105960-mRNA-1 |
chr1_3 | exon | 14841399 | 14841488 | 14841399 | ID=Msa0105960-mRNA-1:exon:5771;Parent=Msa0105960-mRNA-1 |
chr1_3 | CDS | 14839899 | 14840053 | 14839899 | ID=Msa0105960-mRNA-1:cds;Parent=Msa0105960-mRNA-1 |
chr1_3 | CDS | 14840111 | 14840334 | 14840111 | ID=Msa0105960-mRNA-1:cds;Parent=Msa0105960-mRNA-1 |
chr1_3 | CDS | 14840347 | 14840546 | 14840347 | ID=Msa0105960-mRNA-1:cds;Parent=Msa0105960-mRNA-1 |
chr1_3 | CDS | 14841399 | 14841488 | 14841399 | ID=Msa0105960-mRNA-1:cds;Parent=Msa0105960-mRNA-1 |
Gene Sequence |
Protein sequence |