AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0106000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0106000 MtrunA17_Chr2g0287651 51.111 180 73 4 26 191 47 225 2.11e-50 175
Msa0106000 MtrunA17_Chr1g0203051 36.620 142 85 2 54 191 89 229 7.18e-29 113
Msa0106000 MtrunA17_Chr1g0171741 36.800 125 73 3 51 171 140 262 1.43e-22 92.4
Msa0106000 MtrunA17_Chr5g0448761 34.028 144 90 2 52 190 68 211 4.17e-17 79.7
Msa0106000 MtrunA17_Chr2g0276841 34.028 144 87 3 52 188 78 220 7.29e-17 79.0
Msa0106000 MtrunA17_Chr1g0203721 36.054 147 87 4 52 193 71 215 7.51e-16 75.9
Msa0106000 MtrunA17_Chr6g0458391 43.089 123 61 4 52 168 233 352 2.38e-15 74.3
Msa0106000 MtrunA17_Chr6g0458391 33.065 124 77 2 52 172 99 219 6.60e-14 70.1
Msa0106000 MtrunA17_Chr1g0198761 30.303 198 114 6 20 195 13 208 5.99e-14 70.5
Msa0106000 MtrunA17_Chr3g0082121 29.121 182 108 4 27 192 17 193 2.24e-13 68.6
Msa0106000 MtrunA17_Chr8g0363841 29.054 148 98 3 49 192 22 166 3.24e-13 68.2
Msa0106000 MtrunA17_Chr2g0329421 36.000 100 58 2 52 148 35 131 3.80e-13 65.9
Msa0106000 MtrunA17_Chr2g0329361 38.144 97 55 2 52 144 69 164 6.17e-13 65.9
Msa0106000 MtrunA17_Chr5g0431001 29.577 142 87 4 52 181 69 209 1.18e-12 66.2
Msa0106000 MtrunA17_Chr8g0389811 34.653 101 61 2 56 152 96 195 1.84e-12 63.9
Msa0106000 MtrunA17_Chr2g0294841 25.789 190 128 4 13 189 10 199 3.39e-12 65.1
Msa0106000 MtrunA17_Chr2g0290391 29.452 146 91 4 52 189 59 200 6.23e-12 64.3
Msa0106000 MtrunA17_Chr1g0202341 29.268 164 106 4 49 205 52 212 8.47e-12 63.9
Msa0106000 MtrunA17_Chr4g0033611 33.065 124 76 3 52 171 84 204 9.80e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0106000 AT1G10240.2 34.722 144 86 3 52 188 56 198 4.67e-18 82.8
Msa0106000 AT1G10240.1 34.722 144 86 3 52 188 56 198 4.67e-18 82.8
Msa0106000 AT4G38180.1 34.266 143 90 2 52 190 81 223 3.68e-17 80.1
Msa0106000 AT5G28530.1 27.211 147 99 3 49 189 60 204 7.88e-12 64.7
Msa0106000 AT5G28530.3 27.211 147 99 3 49 189 60 204 8.56e-12 64.3
Msa0106000 AT5G28530.2 27.211 147 99 3 49 189 60 204 8.56e-12 64.3
Msa0106000 AT3G59470.2 37.000 100 57 2 52 148 90 186 9.64e-12 63.2
Msa0106000 AT5G28530.4 27.211 147 99 3 49 189 60 204 1.17e-11 63.9
Msa0106000 AT5G28530.5 27.211 147 99 3 49 189 60 204 1.32e-11 63.9
Msa0106000 AT3G59470.3 37.000 100 57 2 52 148 78 174 1.40e-11 62.8
Msa0106000 AT3G59470.1 37.000 100 57 2 52 148 78 174 1.40e-11 62.8
Msa0106000 AT3G07500.1 40.816 98 53 2 52 146 41 136 3.40e-11 61.2

Find 43 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTGATTACAATGAGAATT+TGG 0.226630 1_3:+14869028 Msa0106000:CDS
TACATTTATTTCCTGCATAT+CGG 0.267468 1_3:+14869435 Msa0106000:CDS
TATCAAAACATGTCATATAA+TGG 0.273332 1_3:+14869508 Msa0106000:CDS
TTTGATGAGGATGGAGATAA+TGG 0.283559 1_3:+14868948 Msa0106000:CDS
AAAGCACCGGTTTCGTTGTT+AGG 0.291848 1_3:+14869168 Msa0106000:CDS
ATCAAAACATGTCATATAAT+GGG 0.298640 1_3:+14869509 Msa0106000:CDS
ACATTTATTTCCTGCATATC+GGG 0.352320 1_3:+14869436 Msa0106000:CDS
GGCGAGCTGGACAATTATTC+CGG 0.353940 1_3:-14869322 None:intergenic
TTGGATTCTTGTGTAATAGA+TGG 0.384545 1_3:+14869047 Msa0106000:CDS
TCTGATCCGGTGTTGATAAC+TGG 0.398541 1_3:+14870427 Msa0106000:CDS
CAGTTTGTGTGCAATAGAAA+TGG 0.414838 1_3:+14869239 Msa0106000:CDS
AACACTTGACTAGGGTCAAT+AGG 0.418818 1_3:+14869276 Msa0106000:CDS
ATCTTTCCTAACAACGAAAC+CGG 0.440915 1_3:-14869174 None:intergenic
AAAGTGTACCGCAGCAAAGT+TGG 0.448110 1_3:+14869197 Msa0106000:CDS
GGGGTACATGGTGGCAAACA+AGG 0.461825 1_3:+14869529 Msa0106000:CDS
AAGTGTACCGCAGCAAAGTT+GGG 0.465894 1_3:+14869198 Msa0106000:CDS
TCCGGTGTTGATAACTGGTC+TGG 0.467260 1_3:+14870432 Msa0106000:CDS
GCGAGCTGGACAATTATTCC+GGG 0.478461 1_3:-14869321 None:intergenic
TCCGTCAATCCCCGATATGC+AGG 0.486078 1_3:-14869446 None:intergenic
TAAGAGTAATACCTCTGATC+CGG 0.486946 1_3:+14870414 Msa0106000:intron
TCTAGAGACCACGATGTCTC+TGG 0.494750 1_3:+14869008 Msa0106000:CDS
TCCTGCATATCGGGGATTGA+CGG 0.498073 1_3:+14869445 Msa0106000:CDS
TTGATGAGGATGGAGATAAT+GGG 0.498718 1_3:+14868949 Msa0106000:CDS
TAACGTATACGAAGGCGAGC+TGG 0.516616 1_3:-14869335 None:intergenic
CTGGACAATTATTCCGGGTG+AGG 0.532213 1_3:-14869316 None:intergenic
ATTCTTGTGTAATAGATGGT+AGG 0.533148 1_3:+14869051 Msa0106000:CDS
ATGTCATATAATGGGGTACA+TGG 0.556484 1_3:+14869517 Msa0106000:CDS
TGGACAATTATTCCGGGTGA+GGG 0.565731 1_3:-14869315 None:intergenic
GAGAACATAGACCCCTCACC+CGG 0.567472 1_3:+14869303 Msa0106000:CDS
GTTGACAGTATGCAATCGTA+TGG 0.580581 1_3:+14869485 Msa0106000:CDS
CATTTATTTCCTGCATATCG+GGG 0.582815 1_3:+14869437 Msa0106000:CDS
GGGTACATGGTGGCAAACAA+GGG 0.589509 1_3:+14869530 Msa0106000:CDS
TACATGGTGGCAAACAAGGG+TGG 0.611316 1_3:+14869533 Msa0106000:CDS
AGTTATCAACACCGGATCAG+AGG 0.615238 1_3:-14870425 None:intergenic
CTGGATTATAACGTATACGA+AGG 0.628678 1_3:-14869343 None:intergenic
TCCAGACCAGTTATCAACAC+CGG 0.632781 1_3:-14870433 None:intergenic
ATAATCCAGAAAGCTTGAGA+TGG 0.638128 1_3:+14869357 Msa0106000:intron
AGAAAGCTTGAGATGGAGAG+TGG 0.639417 1_3:+14869364 Msa0106000:intron
GGACAATTATTCCGGGTGAG+GGG 0.643647 1_3:-14869314 None:intergenic
TCAAAACATGTCATATAATG+GGG 0.649125 1_3:+14869510 Msa0106000:CDS
TCATATAATGGGGTACATGG+TGG 0.662255 1_3:+14869520 Msa0106000:CDS
TTTGTTTCCCAACTTTGCTG+CGG 0.666357 1_3:-14869205 None:intergenic
TGTAATCACCAGAGACATCG+TGG 0.695321 1_3:-14869016 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAATGTATATATTTTGAT+GGG - chr1_3:14869424-14869443 None:intergenic 10.0%
!!! AATAAATGTATATATTTTGA+TGG - chr1_3:14869425-14869444 None:intergenic 10.0%
!!! ATAAATGTATATATTTTGAT+GGG - chr1_3:14869424-14869443 None:intergenic 10.0%
!!! AATAAATGTATATATTTTGA+TGG - chr1_3:14869425-14869444 None:intergenic 10.0%
!!! TAAATGTATATATTTTGATG+GGG - chr1_3:14869423-14869442 None:intergenic 15.0%
!!! AAAGATTTGTATAACTATTT+TGG + chr1_3:14869581-14869600 Msa0106000:intron 15.0%
!!! TCATATTTTACATATAACAT+AGG - chr1_3:14869686-14869705 None:intergenic 15.0%
!! TTATATGTAAAATATGAGAA+GGG + chr1_3:14869689-14869708 Msa0106000:intron 15.0%
!!! TAAATGTATATATTTTGATG+GGG - chr1_3:14869423-14869442 None:intergenic 15.0%
!!! AAAGATTTGTATAACTATTT+TGG + chr1_3:14869581-14869600 Msa0106000:intron 15.0%
!!! TCATATTTTACATATAACAT+AGG - chr1_3:14869686-14869705 None:intergenic 15.0%
!! TTATATGTAAAATATGAGAA+GGG + chr1_3:14869689-14869708 Msa0106000:intron 15.0%
!!! TTCTGATTTTAATTTTGATG+AGG + chr1_3:14868935-14868954 Msa0106000:CDS 20.0%
!!! GATATTATGAATCTTGATTT+TGG + chr1_3:14869104-14869123 Msa0106000:intron 20.0%
!!! TTTTGCATACTTTTGATAAA+AGG - chr1_3:14869150-14869169 None:intergenic 20.0%
!! TATCAAAACATGTCATATAA+TGG + chr1_3:14869508-14869527 Msa0106000:CDS 20.0%
!! ATCAAAACATGTCATATAAT+GGG + chr1_3:14869509-14869528 Msa0106000:CDS 20.0%
!! GTTATATGTAAAATATGAGA+AGG + chr1_3:14869688-14869707 Msa0106000:intron 20.0%
!!! GAAATTGAAAAGATTGTTTT+GGG + chr1_3:14869721-14869740 Msa0106000:intron 20.0%
!!! GTATTTATTTTTCTTGTATG+TGG - chr1_3:14869804-14869823 None:intergenic 20.0%
!! AAATAAATACAATCTTCCTT+TGG + chr1_3:14869814-14869833 Msa0106000:intron 20.0%
!!! ATTCACAAACGATTATTTTT+GGG + chr1_3:14869861-14869880 Msa0106000:intron 20.0%
!!! TTCTGATTTTAATTTTGATG+AGG + chr1_3:14868935-14868954 Msa0106000:CDS 20.0%
!!! GATATTATGAATCTTGATTT+TGG + chr1_3:14869104-14869123 Msa0106000:intron 20.0%
!!! TTTTGCATACTTTTGATAAA+AGG - chr1_3:14869150-14869169 None:intergenic 20.0%
!! TATCAAAACATGTCATATAA+TGG + chr1_3:14869508-14869527 Msa0106000:CDS 20.0%
!! ATCAAAACATGTCATATAAT+GGG + chr1_3:14869509-14869528 Msa0106000:CDS 20.0%
!! GTTATATGTAAAATATGAGA+AGG + chr1_3:14869688-14869707 Msa0106000:intron 20.0%
!!! GAAATTGAAAAGATTGTTTT+GGG + chr1_3:14869721-14869740 Msa0106000:intron 20.0%
!!! GTATTTATTTTTCTTGTATG+TGG - chr1_3:14869804-14869823 None:intergenic 20.0%
!! AAATAAATACAATCTTCCTT+TGG + chr1_3:14869814-14869833 Msa0106000:intron 20.0%
!!! ATTCACAAACGATTATTTTT+GGG + chr1_3:14869861-14869880 Msa0106000:intron 20.0%
!!! GATTTTAATTTTGATGAGGA+TGG + chr1_3:14868939-14868958 Msa0106000:CDS 25.0%
! TGTTAAGATTAATACCATGA+CGG + chr1_3:14869076-14869095 Msa0106000:intron 25.0%
! TACATTTATTTCCTGCATAT+CGG + chr1_3:14869435-14869454 Msa0106000:CDS 25.0%
! TCAAAACATGTCATATAATG+GGG + chr1_3:14869510-14869529 Msa0106000:CDS 25.0%
!!! TAACTATTTTGGCAAGAAAA+TGG + chr1_3:14869592-14869611 Msa0106000:intron 25.0%
!!! AACTATTTTGGCAAGAAAAT+GGG + chr1_3:14869593-14869612 Msa0106000:intron 25.0%
!!! ATGGGTATTGATATTAAAGA+TGG + chr1_3:14869611-14869630 Msa0106000:intron 25.0%
!! GGAAATTGAAAAGATTGTTT+TGG + chr1_3:14869720-14869739 Msa0106000:intron 25.0%
!!! CGAAATGATTTTTTGTGTTT+TGG + chr1_3:14869758-14869777 Msa0106000:intron 25.0%
! CAAAAATAATCGTTTGTGAA+TGG - chr1_3:14869862-14869881 None:intergenic 25.0%
!! CATTCACAAACGATTATTTT+TGG + chr1_3:14869860-14869879 Msa0106000:intron 25.0%
!!! TTCACAAACGATTATTTTTG+GGG + chr1_3:14869862-14869881 Msa0106000:intron 25.0%
! AAACAATAGAGACATATACA+TGG + chr1_3:14869903-14869922 Msa0106000:intron 25.0%
! AACAATAGAGACATATACAT+GGG + chr1_3:14869904-14869923 Msa0106000:intron 25.0%
!!! TACTTTCGAGATAAGTTTTT+TGG + chr1_3:14870247-14870266 Msa0106000:intron 25.0%
!!! GATTTTAATTTTGATGAGGA+TGG + chr1_3:14868939-14868958 Msa0106000:CDS 25.0%
! TGTTAAGATTAATACCATGA+CGG + chr1_3:14869076-14869095 Msa0106000:intron 25.0%
! TACATTTATTTCCTGCATAT+CGG + chr1_3:14869435-14869454 Msa0106000:CDS 25.0%
! TCAAAACATGTCATATAATG+GGG + chr1_3:14869510-14869529 Msa0106000:CDS 25.0%
!!! TAACTATTTTGGCAAGAAAA+TGG + chr1_3:14869592-14869611 Msa0106000:intron 25.0%
!!! AACTATTTTGGCAAGAAAAT+GGG + chr1_3:14869593-14869612 Msa0106000:intron 25.0%
!!! ATGGGTATTGATATTAAAGA+TGG + chr1_3:14869611-14869630 Msa0106000:intron 25.0%
!! GGAAATTGAAAAGATTGTTT+TGG + chr1_3:14869720-14869739 Msa0106000:intron 25.0%
!!! CGAAATGATTTTTTGTGTTT+TGG + chr1_3:14869758-14869777 Msa0106000:intron 25.0%
! CAAAAATAATCGTTTGTGAA+TGG - chr1_3:14869862-14869881 None:intergenic 25.0%
!! CATTCACAAACGATTATTTT+TGG + chr1_3:14869860-14869879 Msa0106000:intron 25.0%
!!! TTCACAAACGATTATTTTTG+GGG + chr1_3:14869862-14869881 Msa0106000:intron 25.0%
! AAACAATAGAGACATATACA+TGG + chr1_3:14869903-14869922 Msa0106000:intron 25.0%
! AACAATAGAGACATATACAT+GGG + chr1_3:14869904-14869923 Msa0106000:intron 25.0%
!!! TACTTTCGAGATAAGTTTTT+TGG + chr1_3:14870247-14870266 Msa0106000:intron 25.0%
TGGTGATTACAATGAGAATT+TGG + chr1_3:14869028-14869047 Msa0106000:CDS 30.0%
TTGGATTCTTGTGTAATAGA+TGG + chr1_3:14869047-14869066 Msa0106000:CDS 30.0%
ATTCTTGTGTAATAGATGGT+AGG + chr1_3:14869051-14869070 Msa0106000:CDS 30.0%
AAGCAAAAAACACTTGACTA+GGG + chr1_3:14869268-14869287 Msa0106000:CDS 30.0%
ACATTTATTTCCTGCATATC+GGG + chr1_3:14869436-14869455 Msa0106000:CDS 30.0%
! CAATCTTTTCAATTTCCCAT+TGG - chr1_3:14869717-14869736 None:intergenic 30.0%
! AATTCGTTTCTAGAAGCAAT+GGG + chr1_3:14869932-14869951 Msa0106000:intron 30.0%
TTTCAAGAAAGCAATGTACT+CGG + chr1_3:14870108-14870127 Msa0106000:intron 30.0%
AAAACTCTTCAAATTCCTCT+GGG - chr1_3:14870141-14870160 None:intergenic 30.0%
! AGAGGAATTTGAAGAGTTTT+GGG + chr1_3:14870141-14870160 Msa0106000:intron 30.0%
!! TTCTAAAACATACGAGAACA+AGG + chr1_3:14870207-14870226 Msa0106000:intron 30.0%
ATACGAGAACAAGGAATTAT+GGG + chr1_3:14870216-14870235 Msa0106000:intron 30.0%
! AAACTTATCTCGAAAGTATG+CGG - chr1_3:14870245-14870264 None:intergenic 30.0%
!!! ATAAGTTTTTTGGTCGCATA+CGG + chr1_3:14870257-14870276 Msa0106000:intron 30.0%
TGGTGATTACAATGAGAATT+TGG + chr1_3:14869028-14869047 Msa0106000:CDS 30.0%
TTGGATTCTTGTGTAATAGA+TGG + chr1_3:14869047-14869066 Msa0106000:CDS 30.0%
ATTCTTGTGTAATAGATGGT+AGG + chr1_3:14869051-14869070 Msa0106000:CDS 30.0%
AAGCAAAAAACACTTGACTA+GGG + chr1_3:14869268-14869287 Msa0106000:CDS 30.0%
ACATTTATTTCCTGCATATC+GGG + chr1_3:14869436-14869455 Msa0106000:CDS 30.0%
! CAATCTTTTCAATTTCCCAT+TGG - chr1_3:14869717-14869736 None:intergenic 30.0%
! AATTCGTTTCTAGAAGCAAT+GGG + chr1_3:14869932-14869951 Msa0106000:intron 30.0%
TTTCAAGAAAGCAATGTACT+CGG + chr1_3:14870108-14870127 Msa0106000:intron 30.0%
AAAACTCTTCAAATTCCTCT+GGG - chr1_3:14870141-14870160 None:intergenic 30.0%
! AGAGGAATTTGAAGAGTTTT+GGG + chr1_3:14870141-14870160 Msa0106000:intron 30.0%
!! TTCTAAAACATACGAGAACA+AGG + chr1_3:14870207-14870226 Msa0106000:intron 30.0%
ATACGAGAACAAGGAATTAT+GGG + chr1_3:14870216-14870235 Msa0106000:intron 30.0%
! AAACTTATCTCGAAAGTATG+CGG - chr1_3:14870245-14870264 None:intergenic 30.0%
!!! ATAAGTTTTTTGGTCGCATA+CGG + chr1_3:14870257-14870276 Msa0106000:intron 30.0%
TTTGATGAGGATGGAGATAA+TGG + chr1_3:14868948-14868967 Msa0106000:CDS 35.0%
TTGATGAGGATGGAGATAAT+GGG + chr1_3:14868949-14868968 Msa0106000:CDS 35.0%
TAAGATTAATACCATGACGG+CGG + chr1_3:14869079-14869098 Msa0106000:intron 35.0%
! CAAAAGTATGCAAAAAGCAC+CGG + chr1_3:14869155-14869174 Msa0106000:CDS 35.0%
ATCTTTCCTAACAACGAAAC+CGG - chr1_3:14869177-14869196 None:intergenic 35.0%
CAGTTTGTGTGCAATAGAAA+TGG + chr1_3:14869239-14869258 Msa0106000:CDS 35.0%
GAAGCAAAAAACACTTGACT+AGG + chr1_3:14869267-14869286 Msa0106000:CDS 35.0%
CTGGATTATAACGTATACGA+AGG - chr1_3:14869346-14869365 None:intergenic 35.0%
ATAATCCAGAAAGCTTGAGA+TGG + chr1_3:14869357-14869376 Msa0106000:intron 35.0%
! TGGAGAGTGGTAATTTTTGA+AGG + chr1_3:14869377-14869396 Msa0106000:CDS 35.0%
! GGAGAGTGGTAATTTTTGAA+GGG + chr1_3:14869378-14869397 Msa0106000:CDS 35.0%
!!! ATTTTGATGGGGTTAGTTCA+TGG - chr1_3:14869412-14869431 None:intergenic 35.0%
CATTTATTTCCTGCATATCG+GGG + chr1_3:14869437-14869456 Msa0106000:CDS 35.0%
! ATGTCATATAATGGGGTACA+TGG + chr1_3:14869517-14869536 Msa0106000:CDS 35.0%
TTGCTTCTCTAAGCTATCTT+CGG + chr1_3:14869642-14869661 Msa0106000:intron 35.0%
!! AAATATGAGAAGGGTACCAA+TGG + chr1_3:14869698-14869717 Msa0106000:intron 35.0%
!! AATATGAGAAGGGTACCAAT+GGG + chr1_3:14869699-14869718 Msa0106000:intron 35.0%
!!! AAAAGATTGTTTTGGGCAGA+TGG + chr1_3:14869728-14869747 Msa0106000:intron 35.0%
! CTTCCTTTGGTAATATTCTC+TGG + chr1_3:14869827-14869846 Msa0106000:intron 35.0%
! GAATTCGTTTCTAGAAGCAA+TGG + chr1_3:14869931-14869950 Msa0106000:intron 35.0%
AAACTCTTCAAATTCCTCTG+GGG - chr1_3:14870140-14870159 None:intergenic 35.0%
CAAAACTCTTCAAATTCCTC+TGG - chr1_3:14870142-14870161 None:intergenic 35.0%
! CAGAGGAATTTGAAGAGTTT+TGG + chr1_3:14870140-14870159 Msa0106000:intron 35.0%
CATACGAGAACAAGGAATTA+TGG + chr1_3:14870215-14870234 Msa0106000:intron 35.0%
TTCTATACTCTCTCAATGTG+TGG - chr1_3:14870372-14870391 None:intergenic 35.0%
TAAGAGTAATACCTCTGATC+CGG + chr1_3:14870414-14870433 Msa0106000:intron 35.0%
TTTGATGAGGATGGAGATAA+TGG + chr1_3:14868948-14868967 Msa0106000:CDS 35.0%
TTGATGAGGATGGAGATAAT+GGG + chr1_3:14868949-14868968 Msa0106000:CDS 35.0%
TAAGATTAATACCATGACGG+CGG + chr1_3:14869079-14869098 Msa0106000:intron 35.0%
! CAAAAGTATGCAAAAAGCAC+CGG + chr1_3:14869155-14869174 Msa0106000:CDS 35.0%
ATCTTTCCTAACAACGAAAC+CGG - chr1_3:14869177-14869196 None:intergenic 35.0%
CAGTTTGTGTGCAATAGAAA+TGG + chr1_3:14869239-14869258 Msa0106000:CDS 35.0%
GAAGCAAAAAACACTTGACT+AGG + chr1_3:14869267-14869286 Msa0106000:CDS 35.0%
CTGGATTATAACGTATACGA+AGG - chr1_3:14869346-14869365 None:intergenic 35.0%
ATAATCCAGAAAGCTTGAGA+TGG + chr1_3:14869357-14869376 Msa0106000:intron 35.0%
! TGGAGAGTGGTAATTTTTGA+AGG + chr1_3:14869377-14869396 Msa0106000:CDS 35.0%
! GGAGAGTGGTAATTTTTGAA+GGG + chr1_3:14869378-14869397 Msa0106000:CDS 35.0%
!!! ATTTTGATGGGGTTAGTTCA+TGG - chr1_3:14869412-14869431 None:intergenic 35.0%
CATTTATTTCCTGCATATCG+GGG + chr1_3:14869437-14869456 Msa0106000:CDS 35.0%
! ATGTCATATAATGGGGTACA+TGG + chr1_3:14869517-14869536 Msa0106000:CDS 35.0%
TTGCTTCTCTAAGCTATCTT+CGG + chr1_3:14869642-14869661 Msa0106000:intron 35.0%
!! AAATATGAGAAGGGTACCAA+TGG + chr1_3:14869698-14869717 Msa0106000:intron 35.0%
!! AATATGAGAAGGGTACCAAT+GGG + chr1_3:14869699-14869718 Msa0106000:intron 35.0%
!!! AAAAGATTGTTTTGGGCAGA+TGG + chr1_3:14869728-14869747 Msa0106000:intron 35.0%
! CTTCCTTTGGTAATATTCTC+TGG + chr1_3:14869827-14869846 Msa0106000:intron 35.0%
! GAATTCGTTTCTAGAAGCAA+TGG + chr1_3:14869931-14869950 Msa0106000:intron 35.0%
AAACTCTTCAAATTCCTCTG+GGG - chr1_3:14870140-14870159 None:intergenic 35.0%
CAAAACTCTTCAAATTCCTC+TGG - chr1_3:14870142-14870161 None:intergenic 35.0%
! CAGAGGAATTTGAAGAGTTT+TGG + chr1_3:14870140-14870159 Msa0106000:intron 35.0%
CATACGAGAACAAGGAATTA+TGG + chr1_3:14870215-14870234 Msa0106000:intron 35.0%
TTCTATACTCTCTCAATGTG+TGG - chr1_3:14870372-14870391 None:intergenic 35.0%
TAAGAGTAATACCTCTGATC+CGG + chr1_3:14870414-14870433 Msa0106000:intron 35.0%
!! TGATTTTGGCAGTGAAGAAG+AGG + chr1_3:14869118-14869137 Msa0106000:intron 40.0%
TTTGTTTCCCAACTTTGCTG+CGG - chr1_3:14869208-14869227 None:intergenic 40.0%
AACACTTGACTAGGGTCAAT+AGG + chr1_3:14869276-14869295 Msa0106000:CDS 40.0%
GTTGACAGTATGCAATCGTA+TGG + chr1_3:14869485-14869504 Msa0106000:CDS 40.0%
! TCATATAATGGGGTACATGG+TGG + chr1_3:14869520-14869539 Msa0106000:CDS 40.0%
TGCTTCTCTAAGCTATCTTC+GGG + chr1_3:14869643-14869662 Msa0106000:intron 40.0%
CAGCCAGAGAATATTACCAA+AGG - chr1_3:14869833-14869852 None:intergenic 40.0%
!!! GATTATTTTTGGGGCTGCTT+TGG + chr1_3:14869871-14869890 Msa0106000:intron 40.0%
! TGATGGTGACATGTCTATGA+GGG + chr1_3:14869982-14870001 Msa0106000:intron 40.0%
CACAGTCTGTGAAATGCTTT+GGG - chr1_3:14870028-14870047 None:intergenic 40.0%
ACACAGTCTGTGAAATGCTT+TGG - chr1_3:14870029-14870048 None:intergenic 40.0%
TGAGCTACAGGGTAACAATT+GGG + chr1_3:14870183-14870202 Msa0106000:intron 40.0%
ATTGATTGCTTCACACTGAG+AGG - chr1_3:14870287-14870306 None:intergenic 40.0%
ATGTGTGGTCAAAGTTATGC+AGG - chr1_3:14870357-14870376 None:intergenic 40.0%
!! TGATTTTGGCAGTGAAGAAG+AGG + chr1_3:14869118-14869137 Msa0106000:intron 40.0%
TTTGTTTCCCAACTTTGCTG+CGG - chr1_3:14869208-14869227 None:intergenic 40.0%
AACACTTGACTAGGGTCAAT+AGG + chr1_3:14869276-14869295 Msa0106000:CDS 40.0%
GTTGACAGTATGCAATCGTA+TGG + chr1_3:14869485-14869504 Msa0106000:CDS 40.0%
! TCATATAATGGGGTACATGG+TGG + chr1_3:14869520-14869539 Msa0106000:CDS 40.0%
TGCTTCTCTAAGCTATCTTC+GGG + chr1_3:14869643-14869662 Msa0106000:intron 40.0%
CAGCCAGAGAATATTACCAA+AGG - chr1_3:14869833-14869852 None:intergenic 40.0%
!!! GATTATTTTTGGGGCTGCTT+TGG + chr1_3:14869871-14869890 Msa0106000:intron 40.0%
! TGATGGTGACATGTCTATGA+GGG + chr1_3:14869982-14870001 Msa0106000:intron 40.0%
CACAGTCTGTGAAATGCTTT+GGG - chr1_3:14870028-14870047 None:intergenic 40.0%
ACACAGTCTGTGAAATGCTT+TGG - chr1_3:14870029-14870048 None:intergenic 40.0%
TGAGCTACAGGGTAACAATT+GGG + chr1_3:14870183-14870202 Msa0106000:intron 40.0%
ATTGATTGCTTCACACTGAG+AGG - chr1_3:14870287-14870306 None:intergenic 40.0%
ATGTGTGGTCAAAGTTATGC+AGG - chr1_3:14870357-14870376 None:intergenic 40.0%
TGTAATCACCAGAGACATCG+TGG - chr1_3:14869019-14869038 None:intergenic 45.0%
CATAATATCATCCGCCGTCA+TGG - chr1_3:14869093-14869112 None:intergenic 45.0%
!! AAAGCACCGGTTTCGTTGTT+AGG + chr1_3:14869168-14869187 Msa0106000:CDS 45.0%
AAAGTGTACCGCAGCAAAGT+TGG + chr1_3:14869197-14869216 Msa0106000:CDS 45.0%
AAGTGTACCGCAGCAAAGTT+GGG + chr1_3:14869198-14869217 Msa0106000:CDS 45.0%
TGGACAATTATTCCGGGTGA+GGG - chr1_3:14869318-14869337 None:intergenic 45.0%
ACTCTCCATCTCAAGCTTTC+TGG - chr1_3:14869365-14869384 None:intergenic 45.0%
AGAAAGCTTGAGATGGAGAG+TGG + chr1_3:14869364-14869383 Msa0106000:intron 45.0%
AAGGGTGGATATGATGCTGT+TGG + chr1_3:14869548-14869567 Msa0106000:intron 45.0%
GCTTCTCTAAGCTATCTTCG+GGG + chr1_3:14869644-14869663 Msa0106000:intron 45.0%
CTTCTCTAAGCTATCTTCGG+GGG + chr1_3:14869645-14869664 Msa0106000:intron 45.0%
!!! GATTGTTTTGGGCAGATGGA+TGG + chr1_3:14869732-14869751 Msa0106000:intron 45.0%
! CCATCAGTCACTACTGCTTT+TGG - chr1_3:14869968-14869987 None:intergenic 45.0%
CCAAAAGCAGTAGTGACTGA+TGG + chr1_3:14869965-14869984 Msa0106000:intron 45.0%
! CTGATGGTGACATGTCTATG+AGG + chr1_3:14869981-14870000 Msa0106000:intron 45.0%
AGCATTCTTGTGCAAATGCC+AGG - chr1_3:14870053-14870072 None:intergenic 45.0%
TGTTGAGATGAGTGAGCTAC+AGG + chr1_3:14870171-14870190 Msa0106000:intron 45.0%
GTTGAGATGAGTGAGCTACA+GGG + chr1_3:14870172-14870191 Msa0106000:intron 45.0%
GTGAGCTACAGGGTAACAAT+TGG + chr1_3:14870182-14870201 Msa0106000:intron 45.0%
AGTTATCAACACCGGATCAG+AGG - chr1_3:14870428-14870447 None:intergenic 45.0%
!! TCTGATCCGGTGTTGATAAC+TGG + chr1_3:14870427-14870446 Msa0106000:CDS 45.0%
TCCAGACCAGTTATCAACAC+CGG - chr1_3:14870436-14870455 None:intergenic 45.0%
TGTAATCACCAGAGACATCG+TGG - chr1_3:14869019-14869038 None:intergenic 45.0%
CATAATATCATCCGCCGTCA+TGG - chr1_3:14869093-14869112 None:intergenic 45.0%
!! AAAGCACCGGTTTCGTTGTT+AGG + chr1_3:14869168-14869187 Msa0106000:CDS 45.0%
AAAGTGTACCGCAGCAAAGT+TGG + chr1_3:14869197-14869216 Msa0106000:CDS 45.0%
AAGTGTACCGCAGCAAAGTT+GGG + chr1_3:14869198-14869217 Msa0106000:CDS 45.0%
TGGACAATTATTCCGGGTGA+GGG - chr1_3:14869318-14869337 None:intergenic 45.0%
ACTCTCCATCTCAAGCTTTC+TGG - chr1_3:14869365-14869384 None:intergenic 45.0%
AGAAAGCTTGAGATGGAGAG+TGG + chr1_3:14869364-14869383 Msa0106000:intron 45.0%
AAGGGTGGATATGATGCTGT+TGG + chr1_3:14869548-14869567 Msa0106000:intron 45.0%
GCTTCTCTAAGCTATCTTCG+GGG + chr1_3:14869644-14869663 Msa0106000:intron 45.0%
CTTCTCTAAGCTATCTTCGG+GGG + chr1_3:14869645-14869664 Msa0106000:intron 45.0%
!!! GATTGTTTTGGGCAGATGGA+TGG + chr1_3:14869732-14869751 Msa0106000:intron 45.0%
! CCATCAGTCACTACTGCTTT+TGG - chr1_3:14869968-14869987 None:intergenic 45.0%
CCAAAAGCAGTAGTGACTGA+TGG + chr1_3:14869965-14869984 Msa0106000:intron 45.0%
! CTGATGGTGACATGTCTATG+AGG + chr1_3:14869981-14870000 Msa0106000:intron 45.0%
AGCATTCTTGTGCAAATGCC+AGG - chr1_3:14870053-14870072 None:intergenic 45.0%
TGTTGAGATGAGTGAGCTAC+AGG + chr1_3:14870171-14870190 Msa0106000:intron 45.0%
GTTGAGATGAGTGAGCTACA+GGG + chr1_3:14870172-14870191 Msa0106000:intron 45.0%
GTGAGCTACAGGGTAACAAT+TGG + chr1_3:14870182-14870201 Msa0106000:intron 45.0%
AGTTATCAACACCGGATCAG+AGG - chr1_3:14870428-14870447 None:intergenic 45.0%
!! TCTGATCCGGTGTTGATAAC+TGG + chr1_3:14870427-14870446 Msa0106000:CDS 45.0%
TCCAGACCAGTTATCAACAC+CGG - chr1_3:14870436-14870455 None:intergenic 45.0%
TCTAGAGACCACGATGTCTC+TGG + chr1_3:14869008-14869027 Msa0106000:CDS 50.0%
GGACAATTATTCCGGGTGAG+GGG - chr1_3:14869317-14869336 None:intergenic 50.0%
CTGGACAATTATTCCGGGTG+AGG - chr1_3:14869319-14869338 None:intergenic 50.0%
GCGAGCTGGACAATTATTCC+GGG - chr1_3:14869324-14869343 None:intergenic 50.0%
GGCGAGCTGGACAATTATTC+CGG - chr1_3:14869325-14869344 None:intergenic 50.0%
TAACGTATACGAAGGCGAGC+TGG - chr1_3:14869338-14869357 None:intergenic 50.0%
TCCTGCATATCGGGGATTGA+CGG + chr1_3:14869445-14869464 Msa0106000:CDS 50.0%
GGGTACATGGTGGCAAACAA+GGG + chr1_3:14869530-14869549 Msa0106000:CDS 50.0%
TACATGGTGGCAAACAAGGG+TGG + chr1_3:14869533-14869552 Msa0106000:CDS 50.0%
TCTAAGCTATCTTCGGGGGA+AGG + chr1_3:14869649-14869668 Msa0106000:intron 50.0%
CATTTCACAGACTGTGTGCC+TGG + chr1_3:14870032-14870051 Msa0106000:intron 50.0%
!! TCCGGTGTTGATAACTGGTC+TGG + chr1_3:14870432-14870451 Msa0106000:CDS 50.0%
TCTAGAGACCACGATGTCTC+TGG + chr1_3:14869008-14869027 Msa0106000:CDS 50.0%
GGACAATTATTCCGGGTGAG+GGG - chr1_3:14869317-14869336 None:intergenic 50.0%
CTGGACAATTATTCCGGGTG+AGG - chr1_3:14869319-14869338 None:intergenic 50.0%
GCGAGCTGGACAATTATTCC+GGG - chr1_3:14869324-14869343 None:intergenic 50.0%
GGCGAGCTGGACAATTATTC+CGG - chr1_3:14869325-14869344 None:intergenic 50.0%
TAACGTATACGAAGGCGAGC+TGG - chr1_3:14869338-14869357 None:intergenic 50.0%
TCCTGCATATCGGGGATTGA+CGG + chr1_3:14869445-14869464 Msa0106000:CDS 50.0%
GGGTACATGGTGGCAAACAA+GGG + chr1_3:14869530-14869549 Msa0106000:CDS 50.0%
TACATGGTGGCAAACAAGGG+TGG + chr1_3:14869533-14869552 Msa0106000:CDS 50.0%
TCTAAGCTATCTTCGGGGGA+AGG + chr1_3:14869649-14869668 Msa0106000:intron 50.0%
CATTTCACAGACTGTGTGCC+TGG + chr1_3:14870032-14870051 Msa0106000:intron 50.0%
!! TCCGGTGTTGATAACTGGTC+TGG + chr1_3:14870432-14870451 Msa0106000:CDS 50.0%
GAGAACATAGACCCCTCACC+CGG + chr1_3:14869303-14869322 Msa0106000:CDS 55.0%
TCCGTCAATCCCCGATATGC+AGG - chr1_3:14869449-14869468 None:intergenic 55.0%
GGGGTACATGGTGGCAAACA+AGG + chr1_3:14869529-14869548 Msa0106000:CDS 55.0%
AAGCTATCTTCGGGGGAAGG+CGG + chr1_3:14869652-14869671 Msa0106000:intron 55.0%
GTACTCGGATTTCACCCCAG+AGG + chr1_3:14870123-14870142 Msa0106000:intron 55.0%
GAGAACATAGACCCCTCACC+CGG + chr1_3:14869303-14869322 Msa0106000:CDS 55.0%
TCCGTCAATCCCCGATATGC+AGG - chr1_3:14869449-14869468 None:intergenic 55.0%
GGGGTACATGGTGGCAAACA+AGG + chr1_3:14869529-14869548 Msa0106000:CDS 55.0%
AAGCTATCTTCGGGGGAAGG+CGG + chr1_3:14869652-14869671 Msa0106000:intron 55.0%
GTACTCGGATTTCACCCCAG+AGG + chr1_3:14870123-14870142 Msa0106000:intron 55.0%
AGCTATCTTCGGGGGAAGGC+GGG + chr1_3:14869653-14869672 Msa0106000:intron 60.0%
AGCTATCTTCGGGGGAAGGC+GGG + chr1_3:14869653-14869672 Msa0106000:intron 60.0%
! TCTTCGGGGGAAGGCGGGCT+TGG + chr1_3:14869658-14869677 Msa0106000:intron 70.0%
! TCTTCGGGGGAAGGCGGGCT+TGG + chr1_3:14869658-14869677 Msa0106000:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 14868918 14870507 14868918 ID=Msa0106000;Name=Msa0106000
chr1_3 mRNA 14868918 14870507 14868918 ID=Msa0106000-mRNA-1;Parent=Msa0106000;Name=Msa0106000-mRNA-1;_AED=0.24;_eAED=0.31;_QI=0|0|0|1|0|0|4|0|223
chr1_3 exon 14868918 14869072 14868918 ID=Msa0106000-mRNA-1:exon:5787;Parent=Msa0106000-mRNA-1
chr1_3 exon 14869130 14869353 14869130 ID=Msa0106000-mRNA-1:exon:5788;Parent=Msa0106000-mRNA-1
chr1_3 exon 14869366 14869565 14869366 ID=Msa0106000-mRNA-1:exon:5789;Parent=Msa0106000-mRNA-1
chr1_3 exon 14870418 14870507 14870418 ID=Msa0106000-mRNA-1:exon:5790;Parent=Msa0106000-mRNA-1
chr1_3 CDS 14868918 14869072 14868918 ID=Msa0106000-mRNA-1:cds;Parent=Msa0106000-mRNA-1
chr1_3 CDS 14869130 14869353 14869130 ID=Msa0106000-mRNA-1:cds;Parent=Msa0106000-mRNA-1
chr1_3 CDS 14869366 14869565 14869366 ID=Msa0106000-mRNA-1:cds;Parent=Msa0106000-mRNA-1
chr1_3 CDS 14870418 14870507 14870418 ID=Msa0106000-mRNA-1:cds;Parent=Msa0106000-mRNA-1
Gene Sequence

>Msa0106000

ATGGATAGCTCTGATGATTCTGATTTTAATTTTGATGAGGATGGAGATAATGGGTATTCTACTTCTAGTGAAGACGATGAAAGTATCGAGTCTAGAGACCACGATGTCTCTGGTGATTACAATGAGAATTTGGATTCTTGTGTAATAGATGGTAGTGAAGAAGAGGCTTATGCCTTTTATCAAAAGTATGCAAAAAGCACCGGTTTCGTTGTTAGGAAAGATAAAGTGTACCGCAGCAAAGTTGGGAAACAAATTGTAATGCGACAGTTTGTGTGCAATAGAAATGGATTAAGAAGCAAAAAACACTTGACTAGGGTCAATAGGAAAAGAGAACATAGACCCCTCACCCGGAATAATTGTCCAGCTCGCCTTCGTATACAAAGCTTGAGATGGAGAGTGGTAATTTTTGAAGGGTGTCATAACCATGAACTAACCCCATCAAAATATATACATTTATTTCCTGCATATCGGGGATTGACGGATGCTGATAAAGCTCAAGTTGACAGTATGCAATCGTATGGTATCAAAACATGTCATATAATGGGGTACATGGTGGCAAACAAGGGTGGATATGATGCTAGTAATACCTCTGATCCGGTGTTGATAACTGGTCTGGATAATATTGAGAAAGATGCTGCAAAGATTTATACATCCGAGATATTCAAAAAA

Protein sequence

>Msa0106000

MDSSDDSDFNFDEDGDNGYSTSSEDDESIESRDHDVSGDYNENLDSCVIDGSEEEAYAFYQKYAKSTGFVVRKDKVYRSKVGKQIVMRQFVCNRNGLRSKKHLTRVNRKREHRPLTRNNCPARLRIQSLRWRVVIFEGCHNHELTPSKYIHLFPAYRGLTDADKAQVDSMQSYGIKTCHIMGYMVANKGGYDASNTSDPVLITGLDNIEKDAAKIYTSEIFKK