AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0106390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0106390 MtrunA17_Chr1g0163101 75.294 170 35 3 7 172 2 168 9.24e-89 263
Msa0106390 MtrunA17_Chr1g0162161 84.173 139 19 1 37 172 3 141 7.41e-83 247
Msa0106390 MtrunA17_Chr1g0163131 45.395 304 133 6 10 284 6 305 1.19e-79 244
Msa0106390 MtrunA17_Chr1g0162151 80.952 147 27 1 170 316 3 148 1.67e-73 226
Msa0106390 MtrunA17_Chr1g0163251 43.554 287 137 4 31 299 14 293 1.20e-68 219
Msa0106390 MtrunA17_Chr1g0163091 69.935 153 42 2 170 320 3 153 5.63e-68 209
Msa0106390 MtrunA17_Chr1g0163081 74.638 138 27 3 37 171 5 137 7.61e-66 203
Msa0106390 MtrunA17_Chr1g0163231 44.326 282 133 8 22 288 9 281 2.52e-63 202
Msa0106390 MtrunA17_Chr1g0163261 40.476 294 149 7 22 297 9 294 6.68e-63 201
Msa0106390 MtrunA17_Chr6g0476181 64.935 154 29 3 37 170 1 149 2.33e-61 192
Msa0106390 MtrunA17_Chr1g0163181 37.179 312 158 8 20 299 1 306 5.59e-60 198
Msa0106390 MtrunA17_Chr1g0171611 40.439 319 138 11 8 310 2 284 1.74e-58 189
Msa0106390 MtrunA17_Chr1g0163121 70.769 130 31 3 36 162 9 134 3.34e-57 181
Msa0106390 MtrunA17_Chr1g0163141 62.264 159 38 3 36 172 9 167 4.00e-57 182
Msa0106390 MtrunA17_Chr1g0163201 37.282 287 142 7 38 296 19 295 2.01e-53 180
Msa0106390 MtrunA17_Chr1g0163161 66.667 129 39 2 50 174 1 129 9.56e-53 169
Msa0106390 MtrunA17_Chr4g0067431 27.414 321 184 11 19 298 12 324 1.11e-31 120
Msa0106390 MtrunA17_Chr6g0476171 44.681 141 71 3 164 297 6 146 4.25e-30 114
Msa0106390 MtrunA17_Chr3g0131891 28.475 295 187 11 18 290 15 307 2.91e-28 111
Msa0106390 MtrunA17_Chr1g0163151 44.094 127 66 1 170 296 3 124 1.07e-27 107
Msa0106390 MtrunA17_Chr8g0390841 29.167 336 186 14 8 298 16 344 1.39e-27 112
Msa0106390 MtrunA17_Chr8g0390841 23.920 301 171 11 22 287 242 519 4.95e-11 63.5
Msa0106390 MtrunA17_Chr1g0163111 43.966 116 65 0 177 292 2 117 4.89e-27 106
Msa0106390 MtrunA17_Chr1g0163221 28.349 321 179 13 19 305 8 311 1.32e-26 107
Msa0106390 MtrunA17_Chr1g0208771 30.769 299 162 13 38 298 13 304 4.60e-26 107
Msa0106390 MtrunA17_Chr1g0208771 25.448 279 177 10 22 288 201 460 6.75e-15 75.1
Msa0106390 MtrunA17_Chr3g0103171 28.358 268 162 9 38 284 6 264 2.27e-25 102
Msa0106390 MtrunA17_Chr7g0233561 27.815 302 182 11 18 286 14 312 2.32e-21 92.8
Msa0106390 MtrunA17_Chr1g0163071 24.510 306 180 7 37 298 1 299 6.45e-21 91.3
Msa0106390 MtrunA17_Chr5g0419211 43.478 92 51 1 208 298 11 102 1.06e-20 85.5
Msa0106390 MtrunA17_Chr3g0077411 25.676 296 179 9 5 284 245 515 2.52e-20 91.3
Msa0106390 MtrunA17_Chr1g0163241 39.474 114 62 3 38 144 23 136 3.37e-20 85.9
Msa0106390 MtrunA17_Chr7g0233531 28.302 265 173 9 37 286 1 263 2.11e-19 86.3
Msa0106390 MtrunA17_Chr7g0233521 27.957 279 156 11 37 286 1 263 2.25e-18 83.6
Msa0106390 MtrunA17_Chr1g0163191 39.623 106 60 2 31 132 14 119 2.39e-18 80.9
Msa0106390 MtrunA17_Chr6g0467351 41.489 94 51 3 19 108 12 105 5.79e-17 78.6
Msa0106390 MtrunA17_Chr7g0233541 26.667 285 169 11 37 286 1 280 6.17e-17 79.7
Msa0106390 MtrunA17_Chr5g0429931 26.255 259 156 9 38 287 11 243 8.95e-17 78.6
Msa0106390 MtrunA17_Chr1g0163061 42.553 94 50 2 19 108 12 105 1.48e-16 78.2
Msa0106390 MtrunA17_Chr3g0077451 26.336 262 151 10 36 289 10 237 4.80e-16 76.3
Msa0106390 MtrunA17_Chr3g0103181 27.397 292 178 13 12 284 2 278 1.21e-15 75.9
Msa0106390 MtrunA17_Chr3g0103151 35.659 129 70 5 20 142 10 131 4.62e-15 71.6
Msa0106390 MtrunA17_Chr5g0419201 32.824 131 78 4 22 142 16 146 4.99e-15 72.4
Msa0106390 MtrunA17_Chr7g0233571 35.772 123 73 3 21 137 9 131 1.23e-14 72.0
Msa0106390 MtrunA17_Chr1g0154161 23.759 282 184 10 15 273 23 296 1.53e-14 73.2
Msa0106390 MtrunA17_Chr3g0077461 24.306 288 170 9 5 284 220 467 3.09e-12 67.0
Msa0106390 MtrunA17_Chr3g0077431 27.434 226 122 10 72 289 7 198 2.28e-11 62.4
Msa0106390 MtrunA17_Chr3g0077381 25.561 223 129 7 21 237 246 437 6.28e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0106390 AT4G33280.1 26.282 312 186 13 15 289 18 322 4.78e-15 75.1

Find 48 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAAATCTTGTTAGAATTT+TGG 0.125367 1_3:+15761514 None:intergenic
CACAACGTGGTGATGATATT+TGG 0.270123 1_3:-15761683 Msa0106390:CDS
CAGACTCATTTGGAAGTCTA+AGG 0.283975 1_3:+15761724 None:intergenic
TTTGGAAGTCTAAGGGATAT+TGG 0.307140 1_3:+15761732 None:intergenic
AGTCTGAGTGTAAAATGTTT+TGG 0.322768 1_3:-15761707 Msa0106390:CDS
ATGATATTTGGCTTATGAAT+TGG 0.336273 1_3:-15761671 Msa0106390:CDS
TGTTTGTTTATTAAAGTTTG+TGG 0.340592 1_3:-15760338 Msa0106390:CDS
TCAAAGGGATTGCAAGCATT+AGG 0.348097 1_3:-15760594 Msa0106390:CDS
CAAAGGGATTGCAAGCATTA+GGG 0.352259 1_3:-15760593 Msa0106390:CDS
AAAACTTGGATTCTTATCAT+TGG 0.358112 1_3:+15760772 None:intergenic
TATTCTCTTGAAAACTTACT+TGG 0.379463 1_3:+15760628 None:intergenic
ACTCACGAAGTTGAATAGTT+TGG 0.408216 1_3:+15762673 None:intergenic
ACTCCAGCTGCTACACTTCA+AGG 0.428131 1_3:-15761438 Msa0106390:CDS
GTCAATTTAAGTTCAAAACT+TGG 0.433190 1_3:+15760758 None:intergenic
TGAGTGTTCTTACTAGCTCT+TGG 0.453374 1_3:+15762643 None:intergenic
GGCTTGATTCCTCTCTAGCT+CGG 0.457584 1_3:+15760398 None:intergenic
GTCCCTTGAAGTGTAGCAGC+TGG 0.458922 1_3:+15761435 None:intergenic
TGGCCGTGGAAGTCATGATA+AGG 0.474120 1_3:-15762709 Msa0106390:CDS
AACAAGATTTGTAAACAAGA+AGG 0.479388 1_3:-15761504 Msa0106390:CDS
GAATGGTGGTGTGCTGTTGA+AGG 0.481500 1_3:+15762736 None:intergenic
TATCTCTCTACAAAATTCCT+TGG 0.487897 1_3:+15761774 None:intergenic
AATACTTGAACGAGTTCAAA+GGG 0.491876 1_3:-15760609 Msa0106390:CDS
GGCCGTGGAAGTCATGATAA+GGG 0.518786 1_3:-15762708 Msa0106390:CDS
ACCACCATTCACCATGGCCG+TGG 0.523585 1_3:-15762723 Msa0106390:CDS
GTTCTATTGTGAATGGTGGT+TGG 0.525249 1_3:-15760516 Msa0106390:CDS
ACTTCCACGGCCATGGTGAA+TGG 0.529893 1_3:+15762719 None:intergenic
GCTGGAGTAGCAATATCAAT+CGG 0.531001 1_3:+15761453 None:intergenic
GCTTGATTCCTCTCTAGCTC+GGG 0.531379 1_3:+15760399 None:intergenic
GGGTTGATGAAGATAGAACT+TGG 0.534209 1_3:-15760573 Msa0106390:CDS
TATCATGACTTCCACGGCCA+TGG 0.534966 1_3:+15762712 None:intergenic
TTCTATTTCCCGAGCTAGAG+AGG 0.537691 1_3:-15760407 Msa0106390:CDS
TGATGAAGATAGAACTTGGA+AGG 0.543162 1_3:-15760569 Msa0106390:CDS
ATAGAAATATTAAAAGAAAG+AGG 0.543614 1_3:+15760424 None:intergenic
GAATACTTGAACGAGTTCAA+AGG 0.559537 1_3:-15760610 Msa0106390:CDS
ACAAGATTTGTAAACAAGAA+GGG 0.561418 1_3:-15761503 Msa0106390:CDS
TTTGCACGGTCGCTTAGATG+TGG 0.573143 1_3:-15761642 Msa0106390:CDS
AACAGAAGTTCTATTGTGAA+TGG 0.573160 1_3:-15760523 Msa0106390:CDS
TGTAAACAAGAAGGGAGTGA+TGG 0.584899 1_3:-15761495 Msa0106390:CDS
TTCCCTTATCATGACTTCCA+CGG 0.586234 1_3:+15762706 None:intergenic
CTCCAGCTGCTACACTTCAA+GGG 0.587626 1_3:-15761437 Msa0106390:CDS
AATGGTGGTGTGCTGTTGAA+GGG 0.587983 1_3:+15762737 None:intergenic
AGACTCATTTGGAAGTCTAA+GGG 0.595723 1_3:+15761725 None:intergenic
TGGTTGGAATTTATTTACCA+AGG 0.603797 1_3:-15760500 Msa0106390:CDS
AGAAGTTCTATTGTGAATGG+TGG 0.647616 1_3:-15760520 Msa0106390:CDS
TCCACGGCCATGGTGAATGG+TGG 0.655020 1_3:+15762722 None:intergenic
AAGGAAAATAACTTGCAAGT+CGG 0.656533 1_3:-15760481 Msa0106390:CDS
TGTGCATGCAGATGATACCA+AGG 0.664773 1_3:-15761791 Msa0106390:intron
CAGCACACCACCATTCACCA+TGG 0.696960 1_3:-15762729 Msa0106390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATACATAAATAAAGT+GGG + chr1_3:15761849-15761868 None:intergenic 10.0%
!! TATAAAATACATAAATAAAG+TGG + chr1_3:15761850-15761869 None:intergenic 10.0%
!!! CAATGTATGAATTTAATTTT+AGG + chr1_3:15760905-15760924 None:intergenic 15.0%
!!! AATCATAAATGCTTTTTTTT+CGG + chr1_3:15761184-15761203 None:intergenic 15.0%
!! TTAAAATTGAGATAATCTAA+GGG + chr1_3:15761761-15761780 None:intergenic 15.0%
!! ATTAAAATTGAGATAATCTA+AGG + chr1_3:15761762-15761781 None:intergenic 15.0%
!! AGAGAAATATGTATTTAAAA+AGG + chr1_3:15761877-15761896 None:intergenic 15.0%
!!! GTAAAAAGTACTATTTATTT+AGG - chr1_3:15761958-15761977 Msa0106390:intron 15.0%
!!! AGAATATATATTAATTTTGC+AGG - chr1_3:15762190-15762209 Msa0106390:intron 15.0%
!!! TTTGAAAATGTCTATTATTT+TGG - chr1_3:15762357-15762376 Msa0106390:intron 15.0%
!! ATAGAAATATTAAAAGAAAG+AGG + chr1_3:15762632-15762651 None:intergenic 15.0%
!! ATAAAAACTACAAATCATCA+GGG - chr1_3:15760745-15760764 Msa0106390:CDS 20.0%
!!! GAGATTTTCAATTTCATTAA+TGG - chr1_3:15760854-15760873 Msa0106390:intron 20.0%
!!! CTTTTAGTTTTTCAATACAA+AGG - chr1_3:15761438-15761457 Msa0106390:CDS 20.0%
!!! TACAAATCTTGTTAGAATTT+TGG + chr1_3:15761542-15761561 None:intergenic 20.0%
!! TGATTTATGTATCTATTTGT+AGG - chr1_3:15761714-15761733 Msa0106390:CDS 20.0%
!!! TTCAATTTTGTTTCGATTAA+AGG - chr1_3:15761904-15761923 Msa0106390:intron 20.0%
!!! ACTTACAAATAATTTTCCTT+GGG + chr1_3:15762332-15762351 None:intergenic 20.0%
!!! AACTTACAAATAATTTTCCT+TGG + chr1_3:15762333-15762352 None:intergenic 20.0%
!! TGTTTGTTTATTAAAGTTTG+TGG - chr1_3:15762715-15762734 Msa0106390:CDS 20.0%
!!! TATTAAAGTTTGTGGTTTTT+TGG - chr1_3:15762723-15762742 Msa0106390:CDS 20.0%
!! ACGTATCTAGTCAAATTTTA+GGG - chr1_3:15760653-15760672 Msa0106390:intron 25.0%
! CATAAAAACTACAAATCATC+AGG - chr1_3:15760744-15760763 Msa0106390:CDS 25.0%
! GGGTAACTAATTATTTCAAA+TGG - chr1_3:15760817-15760836 Msa0106390:intron 25.0%
!! AAATTTGTCATTTGATTCTC+CGG + chr1_3:15760938-15760957 None:intergenic 25.0%
! ACAAATTTCTAATCATTGCT+TGG - chr1_3:15760950-15760969 Msa0106390:intron 25.0%
! TTTGTGATAGACTTAAAATG+TGG - chr1_3:15761033-15761052 Msa0106390:intron 25.0%
! ATGTTGAAGCAAAATATGTT+TGG + chr1_3:15761078-15761097 None:intergenic 25.0%
! AAAAATTTAGGTGGGAAAAT+GGG + chr1_3:15761157-15761176 None:intergenic 25.0%
!!! TTTTTCGGTGACAAAAATTT+AGG + chr1_3:15761169-15761188 None:intergenic 25.0%
!! ATGATATTTGGCTTATGAAT+TGG - chr1_3:15761382-15761401 Msa0106390:intron 25.0%
! TGAATTGGAAAAAATTTGCA+CGG - chr1_3:15761397-15761416 Msa0106390:CDS 25.0%
!!! TTAGTTTTTCAATACAAAGG+AGG - chr1_3:15761441-15761460 Msa0106390:CDS 25.0%
!!! TAGTTTTTCAATACAAAGGA+GGG - chr1_3:15761442-15761461 Msa0106390:CDS 25.0%
! AACAAGATTTGTAAACAAGA+AGG - chr1_3:15761549-15761568 Msa0106390:CDS 25.0%
! ACAAGATTTGTAAACAAGAA+GGG - chr1_3:15761550-15761569 Msa0106390:CDS 25.0%
! TGGAGTAAAAATAGAATAGA+AGG + chr1_3:15761791-15761810 None:intergenic 25.0%
!! ATGTACTTTTGCATTTTGTA+TGG + chr1_3:15761811-15761830 None:intergenic 25.0%
!! ATACAAAATGCAAAAGTACA+TGG - chr1_3:15761810-15761829 Msa0106390:intron 25.0%
! ATATATTCTCATCATTTGCA+AGG + chr1_3:15762179-15762198 None:intergenic 25.0%
! AAAACTTGGATTCTTATCAT+TGG + chr1_3:15762284-15762303 None:intergenic 25.0%
!! GTCAATTTAAGTTCAAAACT+TGG + chr1_3:15762298-15762317 None:intergenic 25.0%
! TATTCTCTTGAAAACTTACT+TGG + chr1_3:15762428-15762447 None:intergenic 25.0%
!!! AGTAACCTTGCAATTTTTTA+GGG + chr1_3:15762679-15762698 None:intergenic 25.0%
!!! AAGTAACCTTGCAATTTTTT+AGG + chr1_3:15762680-15762699 None:intergenic 25.0%
! AAAAGAAATGGTACTTGTTG+AGG + chr1_3:15760486-15760505 None:intergenic 30.0%
TGGTGAGGAAATAAAAGAAA+TGG + chr1_3:15760498-15760517 None:intergenic 30.0%
!! TCTTGCTTTGTTAGTTTGTT+TGG + chr1_3:15760518-15760537 None:intergenic 30.0%
TGATATAACAAAGCTTGAGA+GGG + chr1_3:15760567-15760586 None:intergenic 30.0%
ATGATATAACAAAGCTTGAG+AGG + chr1_3:15760568-15760587 None:intergenic 30.0%
GCTGAATATGTACAATGAAA+TGG + chr1_3:15760627-15760646 None:intergenic 30.0%
! CACGTATCTAGTCAAATTTT+AGG - chr1_3:15760652-15760671 Msa0106390:intron 30.0%
! CGTATCTAGTCAAATTTTAG+GGG - chr1_3:15760654-15760673 Msa0106390:intron 30.0%
!! AATTAGTTACCCATTTTTGC+TGG + chr1_3:15760809-15760828 None:intergenic 30.0%
AATTTCTAATCATTGCTTGG+AGG - chr1_3:15760953-15760972 Msa0106390:intron 30.0%
TGATAGACTTAAAATGTGGA+TGG - chr1_3:15761037-15761056 Msa0106390:intron 30.0%
GATAGACTTAAAATGTGGAT+GGG - chr1_3:15761038-15761057 Msa0106390:intron 30.0%
ATAGACTTAAAATGTGGATG+GGG - chr1_3:15761039-15761058 Msa0106390:intron 30.0%
GCAAAATATGTTTGGATCAT+GGG + chr1_3:15761070-15761089 None:intergenic 30.0%
AGCAAAATATGTTTGGATCA+TGG + chr1_3:15761071-15761090 None:intergenic 30.0%
! CATATTTTGCTTCAACATGT+TGG - chr1_3:15761080-15761099 Msa0106390:intron 30.0%
CAAAAATTTAGGTGGGAAAA+TGG + chr1_3:15761158-15761177 None:intergenic 30.0%
! TAATCCAAGTTGAAACTCAT+TGG - chr1_3:15761229-15761248 Msa0106390:intron 30.0%
AAAACCAATGAGTTTCAACT+TGG + chr1_3:15761236-15761255 None:intergenic 30.0%
TATCTCTCTACAAAATTCCT+TGG + chr1_3:15761282-15761301 None:intergenic 30.0%
! GGAATTTTGTAGAGAGATAT+TGG - chr1_3:15761283-15761302 Msa0106390:intron 30.0%
! ATTTTACACTCAGACTCATT+TGG + chr1_3:15761342-15761361 None:intergenic 30.0%
! AGTCTGAGTGTAAAATGTTT+TGG - chr1_3:15761346-15761365 Msa0106390:intron 30.0%
! GTCTGAGTGTAAAATGTTTT+GGG - chr1_3:15761347-15761366 Msa0106390:intron 30.0%
! AAAAAAGCTCTAACAAAGTG+AGG + chr1_3:15761990-15762009 None:intergenic 30.0%
! AATTTTGCAGGTACTAACAA+AGG - chr1_3:15762202-15762221 Msa0106390:intron 30.0%
GTATTCTCTGTTTCAATTCA+TGG + chr1_3:15762406-15762425 None:intergenic 30.0%
AATACTTGAACGAGTTCAAA+GGG - chr1_3:15762444-15762463 Msa0106390:intron 30.0%
AACAGAAGTTCTATTGTGAA+TGG - chr1_3:15762530-15762549 Msa0106390:intron 30.0%
TGGTTGGAATTTATTTACCA+AGG - chr1_3:15762553-15762572 Msa0106390:intron 30.0%
! AAGGAAAATAACTTGCAAGT+CGG - chr1_3:15762572-15762591 Msa0106390:intron 30.0%
ACTCACGAAGTTGAATAGTT+TGG + chr1_3:15760383-15760402 None:intergenic 35.0%
!! CTTTGTTAGTTTGTTTGGTG+AGG + chr1_3:15760513-15760532 None:intergenic 35.0%
!!! CTTGAGAGGGTTATTTTTCA+GGG + chr1_3:15760554-15760573 None:intergenic 35.0%
TGTACAATGAAATGGTCTAG+TGG + chr1_3:15760619-15760638 None:intergenic 35.0%
GCTCATGTTTATAGCTTCTA+GGG - chr1_3:15760676-15760695 Msa0106390:intron 35.0%
CTCATGTTTATAGCTTCTAG+GGG - chr1_3:15760677-15760696 Msa0106390:intron 35.0%
!! AGTGTTGATTCTCTCATTAG+TGG - chr1_3:15760706-15760725 Msa0106390:intron 35.0%
! ATTTTTGCTGGTAGACCTAA+AGG + chr1_3:15760797-15760816 None:intergenic 35.0%
TTTAGGTCTACCAGCAAAAA+TGG - chr1_3:15760796-15760815 Msa0106390:CDS 35.0%
TTAGGTCTACCAGCAAAAAT+GGG - chr1_3:15760797-15760816 Msa0106390:CDS 35.0%
CATACATTGTTCTTGACAAC+CGG - chr1_3:15760916-15760935 Msa0106390:intron 35.0%
TCGGTGACAAAAATTTAGGT+GGG + chr1_3:15761165-15761184 None:intergenic 35.0%
TTCGGTGACAAAAATTTAGG+TGG + chr1_3:15761166-15761185 None:intergenic 35.0%
TTTGGAAGTCTAAGGGATAT+TGG + chr1_3:15761324-15761343 None:intergenic 35.0%
AGACTCATTTGGAAGTCTAA+GGG + chr1_3:15761331-15761350 None:intergenic 35.0%
! TTGACACAATTTTATGCCCA+AGG - chr1_3:15762313-15762332 Msa0106390:intron 35.0%
GAATACTTGAACGAGTTCAA+AGG - chr1_3:15762443-15762462 Msa0106390:intron 35.0%
TGATGAAGATAGAACTTGGA+AGG - chr1_3:15762484-15762503 Msa0106390:intron 35.0%
AGAAGTTCTATTGTGAATGG+TGG - chr1_3:15762533-15762552 Msa0106390:intron 35.0%
!! GACTTGCAAGTTATTTTCCT+TGG + chr1_3:15762573-15762592 None:intergenic 35.0%
TCAAGCCCTAAAAAATTGCA+AGG - chr1_3:15762671-15762690 Msa0106390:CDS 35.0%
TTCCCTTATCATGACTTCCA+CGG + chr1_3:15760350-15760369 None:intergenic 40.0%
! TGAGTGTTCTTACTAGCTCT+TGG + chr1_3:15760413-15760432 None:intergenic 40.0%
! GAAATGGTACTTGTTGAGGA+TGG + chr1_3:15760482-15760501 None:intergenic 40.0%
!!! GCTTGAGAGGGTTATTTTTC+AGG + chr1_3:15760555-15760574 None:intergenic 40.0%
GGCTCATGTTTATAGCTTCT+AGG - chr1_3:15760675-15760694 Msa0106390:intron 40.0%
GTAAAGCCACTAAAGCCTTT+AGG - chr1_3:15760779-15760798 Msa0106390:CDS 40.0%
ACCTAAGCAAGCTAGATATG+TGG + chr1_3:15761008-15761027 None:intergenic 40.0%
CAGACTCATTTGGAAGTCTA+AGG + chr1_3:15761332-15761351 None:intergenic 40.0%
!! AAAATGTTTTGGGCACAACG+TGG - chr1_3:15761357-15761376 Msa0106390:intron 40.0%
! CACAACGTGGTGATGATATT+TGG - chr1_3:15761370-15761389 Msa0106390:intron 40.0%
TGTAAACAAGAAGGGAGTGA+TGG - chr1_3:15761558-15761577 Msa0106390:intron 40.0%
GCTGGAGTAGCAATATCAAT+CGG + chr1_3:15761603-15761622 None:intergenic 40.0%
TCAAGCCAACAAAAAGTCTC+AGG - chr1_3:15761672-15761691 Msa0106390:CDS 40.0%
! ACTTGCCTGAGACTTTTTGT+TGG + chr1_3:15761680-15761699 None:intergenic 40.0%
TTTGCAGGTACTAACAAAGG+AGG - chr1_3:15762205-15762224 Msa0106390:intron 40.0%
TCAAAGGGATTGCAAGCATT+AGG - chr1_3:15762459-15762478 Msa0106390:intron 40.0%
CAAAGGGATTGCAAGCATTA+GGG - chr1_3:15762460-15762479 Msa0106390:intron 40.0%
!! GGGTTGATGAAGATAGAACT+TGG - chr1_3:15762480-15762499 Msa0106390:intron 40.0%
GTTCTATTGTGAATGGTGGT+TGG - chr1_3:15762537-15762556 Msa0106390:intron 40.0%
! AATGGTGGTGTGCTGTTGAA+GGG + chr1_3:15760319-15760338 None:intergenic 45.0%
! GGTAGACCTAAAGGCTTTAG+TGG + chr1_3:15760788-15760807 None:intergenic 45.0%
!! GCCACATATCTAGCTTGCTT+AGG - chr1_3:15761004-15761023 Msa0106390:intron 45.0%
TGTGCATGCAGATGATACCA+AGG - chr1_3:15761262-15761281 Msa0106390:intron 45.0%
! CAAAGGAGGCATGACTAAGA+AGG - chr1_3:15762219-15762238 Msa0106390:intron 45.0%
TTCTATTTCCCGAGCTAGAG+AGG - chr1_3:15762646-15762665 Msa0106390:intron 45.0%
! GAATGGTGGTGTGCTGTTGA+AGG + chr1_3:15760320-15760339 None:intergenic 50.0%
TATCATGACTTCCACGGCCA+TGG + chr1_3:15760344-15760363 None:intergenic 50.0%
TGGCCGTGGAAGTCATGATA+AGG - chr1_3:15760344-15760363 Msa0106390:CDS 50.0%
GGCCGTGGAAGTCATGATAA+GGG - chr1_3:15760345-15760364 Msa0106390:CDS 50.0%
! TAGTGGCTTTACCCTCGAGT+CGG + chr1_3:15760771-15760790 None:intergenic 50.0%
TTTGCACGGTCGCTTAGATG+TGG - chr1_3:15761411-15761430 Msa0106390:CDS 50.0%
ACTCCAGCTGCTACACTTCA+AGG - chr1_3:15761615-15761634 Msa0106390:CDS 50.0%
CTCCAGCTGCTACACTTCAA+GGG - chr1_3:15761616-15761635 Msa0106390:CDS 50.0%
! GCTTGATTCCTCTCTAGCTC+GGG + chr1_3:15762657-15762676 None:intergenic 50.0%
GGCTTGATTCCTCTCTAGCT+CGG + chr1_3:15762658-15762677 None:intergenic 50.0%
CAGCACACCACCATTCACCA+TGG - chr1_3:15760324-15760343 Msa0106390:CDS 55.0%
ACTTCCACGGCCATGGTGAA+TGG + chr1_3:15760337-15760356 None:intergenic 55.0%
!! AAATCATCAGGGCCGACTCG+AGG - chr1_3:15760756-15760775 Msa0106390:CDS 55.0%
!! AATCATCAGGGCCGACTCGA+GGG - chr1_3:15760757-15760776 Msa0106390:CDS 55.0%
GTCCCTTGAAGTGTAGCAGC+TGG + chr1_3:15761621-15761640 None:intergenic 55.0%
ACCACCATTCACCATGGCCG+TGG - chr1_3:15760330-15760349 Msa0106390:CDS 60.0%
TCCACGGCCATGGTGAATGG+TGG + chr1_3:15760334-15760353 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 15760312 15762763 15760312 ID=Msa0106390;Name=Msa0106390
chr1_3 mRNA 15760312 15762763 15760312 ID=Msa0106390-mRNA-1;Parent=Msa0106390;Name=Msa0106390-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|0.5|0.4|5|0|320
chr1_3 exon 15762656 15762763 15762656 ID=Msa0106390-mRNA-1:exon:5996;Parent=Msa0106390-mRNA-1
chr1_3 exon 15761580 15761802 15761580 ID=Msa0106390-mRNA-1:exon:5995;Parent=Msa0106390-mRNA-1
chr1_3 exon 15761389 15761570 15761389 ID=Msa0106390-mRNA-1:exon:5994;Parent=Msa0106390-mRNA-1
chr1_3 exon 15760730 15760834 15760730 ID=Msa0106390-mRNA-1:exon:5993;Parent=Msa0106390-mRNA-1
chr1_3 exon 15760312 15760656 15760312 ID=Msa0106390-mRNA-1:exon:5992;Parent=Msa0106390-mRNA-1
chr1_3 CDS 15762656 15762763 15762656 ID=Msa0106390-mRNA-1:cds;Parent=Msa0106390-mRNA-1
chr1_3 CDS 15761580 15761802 15761580 ID=Msa0106390-mRNA-1:cds;Parent=Msa0106390-mRNA-1
chr1_3 CDS 15761389 15761570 15761389 ID=Msa0106390-mRNA-1:cds;Parent=Msa0106390-mRNA-1
chr1_3 CDS 15760730 15760834 15760730 ID=Msa0106390-mRNA-1:cds;Parent=Msa0106390-mRNA-1
chr1_3 CDS 15760312 15760656 15760312 ID=Msa0106390-mRNA-1:cds;Parent=Msa0106390-mRNA-1
Gene Sequence

>Msa0106390

ATGTCCCTTCAACAGCACACCACCATTCACCATGGCCGTGGAAGTCATGATAAGGGAATGCATTTCTACCAAACTATTCAACTTCGTGAGTTGCAACACCAAGAGCTAATGATACCAAGGAATTTTGTAGAGAGATATTGGAAAGATGTATCAAATCCAATATCCCTTAGACTTCCAAATGAGTCTGAGTGTAAAATGTTTTGGGCACAACGTGGTGATGATATTTGGCTTATGAATTGGAAAAAATTTGCACGGTCGCTTAGATGTGGAGATCTTTTAGTTTTTCAATACAAAGGAGGGTCAGATTTTCATGTCATTATATTAGATGATAAAATCGACTATTCAAGTATGAAATGCAATGACGACCAAAATTCTAACAAGATTTGTAAACAAGAAGGGAGTGATGGTGATGATTGTGTTGAGATTCCGATTGATATTGCTACTCCAGCTGCTACACTTCAAGGGACAAACATTAACAAGAGAAAAATTAATATGAATTCAAGCCAACAAAAAGCTAAGAAATGTTCAATAACTGAAGCAAATAATAAGAAATCCAATGATAAGAATCCAAGTTTTGAACTTAAATTGACACAATTTTATGCCCAAGGAAAATTATTTAGAATACCAAGTAAGTTTTCAAGAGAATACTTGAACGAGTTCAAAGGGATTGCAAGCATTAGGGTTGATGAAGATAGAACTTGGAAGGTGAATGTGAAGTTTGATTATGCAAACAGAAGTTCTATTGTGAATGGTGGTTGGAATTTATTTACCAAGGAAAATAACTTGCAAGTCGGCGATGTGTGTAAATTTGAGATGACTCGATCTGAGCCTCTTTCTTTTAATATTTCTATTTCCCGAGCTAGAGAGGAATCAAGCCCTAAAAAATTGCAAGGTTACTTTCTTTCTTCATTATTTGTTTGTTTATTAAAGTTTGTGGTTTTTTGGTCATTGATGTTTGATTAA
Protein sequence

>Msa0106390

MSLQQHTTIHHGRGSHDKGMHFYQTIQLRELQHQELMIPRNFVERYWKDVSNPISLRLPNESECKMFWAQRGDDIWLMNWKKFARSLRCGDLLVFQYKGGSDFHVIILDDKIDYSSMKCNDDQNSNKICKQEGSDGDDCVEIPIDIATPAATLQGTNINKRKINMNSSQQKAKKCSITEANNKKSNDKNPSFELKLTQFYAQGKLFRIPSKFSREYLNEFKGIASIRVDEDRTWKVNVKFDYANRSSIVNGGWNLFTKENNLQVGDVCKFEMTRSEPLSFNISISRAREESSPKKLQGYFLSSLFVCLLKFVVFWSLMFD*