Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106490 | sp|Q8L3W1|VRN1_ARATH | 51.613 | 372 | 136 | 9 | 3 | 364 | 2 | 339 | 3.47e-115 | 342 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106490 | A0A072VFE7 | 78.146 | 453 | 28 | 6 | 1 | 402 | 1 | 433 | 0.0 | 682 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0106490 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106490 | MtrunA17_Chr1g0162441 | 78.146 | 453 | 28 | 6 | 1 | 402 | 1 | 433 | 0.0 | 682 |
| Msa0106490 | MtrunA17_Chr4g0033961 | 55.134 | 448 | 133 | 8 | 3 | 402 | 2 | 429 | 2.36e-160 | 457 |
| Msa0106490 | MtrunA17_Chr1g0162411 | 53.846 | 169 | 63 | 2 | 1 | 154 | 1 | 169 | 1.12e-49 | 174 |
| Msa0106490 | MtrunA17_Chr1g0162411 | 61.062 | 113 | 24 | 4 | 219 | 329 | 297 | 391 | 1.05e-31 | 125 |
| Msa0106490 | MtrunA17_Chr8g0390841 | 27.793 | 367 | 191 | 10 | 7 | 367 | 39 | 337 | 1.72e-36 | 139 |
| Msa0106490 | MtrunA17_Chr1g0162421 | 89.655 | 58 | 6 | 0 | 21 | 78 | 7 | 64 | 3.13e-31 | 113 |
| Msa0106490 | MtrunA17_Chr1g0163071 | 25.706 | 354 | 188 | 8 | 23 | 365 | 2 | 291 | 2.01e-29 | 116 |
| Msa0106490 | MtrunA17_Chr1g0208771 | 26.857 | 350 | 191 | 9 | 22 | 369 | 12 | 298 | 5.36e-28 | 114 |
| Msa0106490 | MtrunA17_Chr1g0162431 | 83.333 | 54 | 9 | 0 | 314 | 367 | 5 | 58 | 6.70e-25 | 96.7 |
| Msa0106490 | MtrunA17_Chr4g0009491 | 47.312 | 93 | 49 | 0 | 7 | 99 | 225 | 317 | 5.83e-23 | 100 |
| Msa0106490 | MtrunA17_Chr4g0009491 | 43.038 | 79 | 45 | 0 | 21 | 99 | 11 | 89 | 1.37e-16 | 81.3 |
| Msa0106490 | MtrunA17_Chr3g0077451 | 43.925 | 107 | 54 | 2 | 21 | 127 | 10 | 110 | 6.49e-23 | 96.7 |
| Msa0106490 | MtrunA17_Chr3g0077451 | 29.801 | 151 | 73 | 5 | 223 | 364 | 111 | 237 | 9.85e-11 | 61.6 |
| Msa0106490 | MtrunA17_Chr3g0077461 | 46.237 | 93 | 50 | 0 | 7 | 99 | 237 | 329 | 8.61e-23 | 99.8 |
| Msa0106490 | MtrunA17_Chr3g0077461 | 47.436 | 78 | 41 | 0 | 22 | 99 | 22 | 99 | 5.73e-18 | 85.5 |
| Msa0106490 | MtrunA17_Chr3g0077411 | 47.872 | 94 | 48 | 1 | 7 | 99 | 262 | 355 | 9.42e-23 | 100 |
| Msa0106490 | MtrunA17_Chr3g0077411 | 46.237 | 93 | 50 | 0 | 7 | 99 | 25 | 117 | 3.98e-22 | 98.2 |
| Msa0106490 | MtrunA17_Chr5g0429931 | 52.564 | 78 | 37 | 0 | 22 | 99 | 10 | 87 | 1.33e-22 | 95.9 |
| Msa0106490 | MtrunA17_Chr3g0077381 | 46.237 | 93 | 50 | 0 | 7 | 99 | 247 | 339 | 2.25e-21 | 95.5 |
| Msa0106490 | MtrunA17_Chr3g0077381 | 46.835 | 79 | 42 | 0 | 21 | 99 | 34 | 112 | 3.44e-19 | 89.0 |
| Msa0106490 | MtrunA17_Chr7g0233571 | 41.837 | 98 | 57 | 0 | 3 | 100 | 6 | 103 | 6.77e-20 | 87.8 |
| Msa0106490 | MtrunA17_Chr3g0077361 | 42.553 | 94 | 53 | 1 | 7 | 99 | 40 | 133 | 7.44e-20 | 91.3 |
| Msa0106490 | MtrunA17_Chr3g0077361 | 43.662 | 71 | 40 | 0 | 7 | 77 | 289 | 359 | 5.71e-16 | 79.7 |
| Msa0106490 | MtrunA17_Chr3g0077361 | 30.612 | 147 | 74 | 4 | 220 | 362 | 380 | 502 | 5.30e-13 | 70.5 |
| Msa0106490 | MtrunA17_Chr7g0233561 | 45.556 | 90 | 49 | 0 | 7 | 96 | 18 | 107 | 1.92e-19 | 88.6 |
| Msa0106490 | MtrunA17_Chr3g0103181 | 44.444 | 90 | 48 | 1 | 7 | 96 | 12 | 99 | 3.09e-19 | 87.0 |
| Msa0106490 | MtrunA17_Chr3g0103151 | 45.556 | 90 | 47 | 1 | 7 | 96 | 12 | 99 | 1.28e-18 | 82.4 |
| Msa0106490 | MtrunA17_Chr3g0103191 | 43.333 | 90 | 49 | 1 | 7 | 96 | 12 | 99 | 3.30e-18 | 83.6 |
| Msa0106490 | MtrunA17_Chr5g0419201 | 38.298 | 94 | 58 | 0 | 7 | 100 | 16 | 109 | 9.85e-18 | 80.9 |
| Msa0106490 | MtrunA17_Chr3g0131891 | 39.362 | 94 | 57 | 0 | 7 | 100 | 19 | 112 | 3.51e-17 | 82.0 |
| Msa0106490 | MtrunA17_Chr3g0131891 | 29.054 | 148 | 82 | 3 | 226 | 367 | 179 | 309 | 6.35e-13 | 69.3 |
| Msa0106490 | MtrunA17_Chr7g0233541 | 42.308 | 78 | 45 | 0 | 23 | 100 | 2 | 79 | 6.83e-17 | 80.5 |
| Msa0106490 | MtrunA17_Chr7g0233531 | 44.595 | 74 | 41 | 0 | 23 | 96 | 2 | 75 | 5.28e-16 | 77.8 |
| Msa0106490 | MtrunA17_Chr3g0103171 | 42.667 | 75 | 43 | 0 | 22 | 96 | 5 | 79 | 4.30e-15 | 74.7 |
| Msa0106490 | MtrunA17_Chr7g0233521 | 41.892 | 74 | 43 | 0 | 23 | 96 | 2 | 75 | 5.58e-15 | 74.7 |
| Msa0106490 | MtrunA17_Chr1g0154111 | 22.965 | 344 | 235 | 5 | 19 | 357 | 38 | 356 | 2.51e-14 | 74.7 |
| Msa0106490 | MtrunA17_Chr1g0154041 | 36.559 | 93 | 58 | 1 | 4 | 96 | 13 | 104 | 8.39e-14 | 73.2 |
| Msa0106490 | MtrunA17_Chr3g0077421 | 32.184 | 174 | 77 | 7 | 203 | 362 | 51 | 197 | 2.56e-13 | 68.6 |
| Msa0106490 | MtrunA17_Chr3g0077441 | 32.184 | 174 | 77 | 7 | 203 | 362 | 51 | 197 | 2.56e-13 | 68.6 |
| Msa0106490 | MtrunA17_Chr1g0154161 | 44.304 | 79 | 44 | 0 | 19 | 97 | 42 | 120 | 1.26e-12 | 68.6 |
| Msa0106490 | MtrunA17_Chr1g0154101 | 37.931 | 87 | 53 | 1 | 11 | 97 | 187 | 272 | 5.47e-12 | 67.8 |
| Msa0106490 | MtrunA17_Chr1g0154101 | 41.772 | 79 | 46 | 0 | 19 | 97 | 37 | 115 | 4.07e-11 | 65.1 |
| Msa0106490 | MtrunA17_Chr1g0154131 | 39.560 | 91 | 54 | 1 | 7 | 97 | 26 | 115 | 1.06e-11 | 66.2 |
| Msa0106490 | MtrunA17_Chr1g0154131 | 40.506 | 79 | 47 | 0 | 19 | 97 | 194 | 272 | 2.67e-11 | 65.1 |
| Msa0106490 | MtrunA17_Chr1g0154211 | 41.772 | 79 | 46 | 0 | 19 | 97 | 34 | 112 | 1.07e-11 | 65.9 |
| Msa0106490 | MtrunA17_Chr3g0077431 | 29.801 | 151 | 73 | 5 | 223 | 364 | 72 | 198 | 2.65e-11 | 62.8 |
| Msa0106490 | MtrunA17_Chr1g0154171 | 41.772 | 79 | 46 | 0 | 19 | 97 | 34 | 112 | 3.09e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106490 | AT3G18990.1 | 51.613 | 372 | 136 | 9 | 3 | 364 | 2 | 339 | 3.53e-116 | 342 |
| Msa0106490 | AT3G18990.2 | 51.344 | 372 | 137 | 9 | 3 | 364 | 2 | 339 | 5.32e-115 | 340 |
| Msa0106490 | AT1G49480.3 | 65.318 | 173 | 36 | 3 | 192 | 364 | 76 | 224 | 4.33e-71 | 223 |
| Msa0106490 | AT1G49480.1 | 65.318 | 173 | 36 | 3 | 192 | 364 | 76 | 224 | 4.33e-71 | 223 |
| Msa0106490 | AT1G49480.2 | 65.318 | 173 | 36 | 3 | 192 | 364 | 76 | 224 | 4.33e-71 | 223 |
| Msa0106490 | AT4G01580.1 | 41.237 | 97 | 57 | 0 | 3 | 99 | 26 | 122 | 3.03e-21 | 90.9 |
| Msa0106490 | AT3G18960.2 | 39.796 | 98 | 59 | 0 | 3 | 100 | 26 | 123 | 7.24e-21 | 90.1 |
| Msa0106490 | AT3G18960.1 | 39.796 | 98 | 59 | 0 | 3 | 100 | 26 | 123 | 8.72e-21 | 90.1 |
| Msa0106490 | AT3G18960.3 | 38.824 | 85 | 52 | 0 | 16 | 100 | 2 | 86 | 6.36e-15 | 72.8 |
| Msa0106490 | AT1G49475.1 | 35.000 | 100 | 61 | 2 | 3 | 99 | 27 | 125 | 2.86e-14 | 71.2 |
Find 107 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTACATTAGAGAACAATTT+AGG | 0.133108 | 1_3:-15926630 | Msa0106490:CDS |
| AAGAATTTGAACGGTGTTTC+AGG | 0.187714 | 1_3:-15926747 | Msa0106490:CDS |
| AAAAGGTTGACAACCGAATT+TGG | 0.209979 | 1_3:-15927917 | Msa0106490:CDS |
| TCATTGCAGAATTTGTTTAA+TGG | 0.251640 | 1_3:-15927570 | Msa0106490:CDS |
| CTAAACTCAACCACGTTAAC+TGG | 0.274983 | 1_3:-15927542 | Msa0106490:CDS |
| CATTGCAGAATTTGTTTAAT+GGG | 0.276665 | 1_3:-15927569 | Msa0106490:CDS |
| TTATTAACCCCTTCCTCATT+AGG | 0.282526 | 1_3:+15927402 | None:intergenic |
| TGATGGCACTGTCTGGCGTC+TGG | 0.293334 | 1_3:-15927946 | Msa0106490:CDS |
| TATCGACTCCTTTGAATTCC+TGG | 0.294296 | 1_3:-15927688 | Msa0106490:CDS |
| GCGGCCCTCTTATTTATATA+GGG | 0.304158 | 1_3:-15926896 | Msa0106490:CDS |
| TTTATATAGGGGATGTATAA+TGG | 0.315777 | 1_3:-15926884 | Msa0106490:intron |
| TATTTCCTAAGAAAATTATC+TGG | 0.317191 | 1_3:+15928008 | None:intergenic |
| AGACTCATGAACTTAAAATT+AGG | 0.331687 | 1_3:-15930024 | Msa0106490:five_prime_UTR |
| TTACATTAGAGAACAATTTA+GGG | 0.336001 | 1_3:-15926629 | Msa0106490:CDS |
| CTGGCGTCTGGGATTGAAAA+AGG | 0.342376 | 1_3:-15927934 | Msa0106490:CDS |
| ATTCAAAGCATAATCTTAGA+AGG | 0.359402 | 1_3:+15929846 | None:intergenic |
| CAAAGCAGGAAGGCAAATAC+TGG | 0.378699 | 1_3:+15926775 | None:intergenic |
| ATCCTTGGCTTAACTTTGCT+CGG | 0.390374 | 1_3:+15926661 | None:intergenic |
| CGTGTAAAAGAGGACGAGTC+AGG | 0.395227 | 1_3:-15926540 | Msa0106490:CDS |
| TTACCAATTGTCTAGTTTGA+AGG | 0.397207 | 1_3:+15929760 | None:intergenic |
| ATCCCTTCAAACTAGACAAT+TGG | 0.398966 | 1_3:-15929763 | Msa0106490:intron |
| TTGCTCGGCCTCCTTTATAT+AGG | 0.399413 | 1_3:+15926676 | None:intergenic |
| TTACTCAGATCTAAATTGTT+GGG | 0.408825 | 1_3:+15929900 | None:intergenic |
| TTTCTAGTATTCACTTATGA+AGG | 0.411457 | 1_3:-15927840 | Msa0106490:CDS |
| TGCGGCCCTCTTATTTATAT+AGG | 0.421241 | 1_3:-15926897 | Msa0106490:CDS |
| ATTCAGTCAACCAGAGATAT+AGG | 0.424869 | 1_3:-15927483 | Msa0106490:CDS |
| ATTACTCAGATCTAAATTGT+TGG | 0.426490 | 1_3:+15929899 | None:intergenic |
| AGCCATCGACAAACCAAATT+CGG | 0.433503 | 1_3:+15927904 | None:intergenic |
| CTGTTCCTGATGGCACTGTC+TGG | 0.439890 | 1_3:-15927953 | Msa0106490:CDS |
| CTTGCAATGCACCAGGAGTA+AGG | 0.441488 | 1_3:+15927649 | None:intergenic |
| GAATTTGGTTTGTCGATGGC+TGG | 0.442071 | 1_3:-15927902 | Msa0106490:CDS |
| TATATCTCTGGTTGACTGAA+TGG | 0.443124 | 1_3:+15927485 | None:intergenic |
| TTAAACAAATTCTGCAATGA+TGG | 0.444180 | 1_3:+15927573 | None:intergenic |
| CTGAATAGGGTTTGAGGAGA+AGG | 0.449747 | 1_3:-15929933 | Msa0106490:five_prime_UTR |
| TTTGTTCAACGTTACTCCAT+TGG | 0.453832 | 1_3:-15927873 | Msa0106490:CDS |
| ACATCCCCTATATAAATAAG+AGG | 0.455776 | 1_3:+15926891 | None:intergenic |
| CAACGTTACTCCATTGGCAT+TGG | 0.459331 | 1_3:-15927867 | Msa0106490:CDS |
| ATGTAAATTCATACCATCCT+TGG | 0.460863 | 1_3:+15926646 | None:intergenic |
| TACTTTGTTTCGTGTAAAAG+AGG | 0.461446 | 1_3:-15926550 | Msa0106490:CDS |
| GATGGCACTGTCTGGCGTCT+GGG | 0.465269 | 1_3:-15927945 | Msa0106490:CDS |
| TGTCTAGTTTGAAGGGATGA+AGG | 0.472503 | 1_3:+15929768 | None:intergenic |
| CCTTTATATAGGCAGCGAAC+AGG | 0.472865 | 1_3:+15926687 | None:intergenic |
| ATTAAGCTTCAGATCTCTGA+TGG | 0.476714 | 1_3:-15926720 | Msa0106490:CDS |
| CACGTTAACTGGGGAGATAT+CGG | 0.483067 | 1_3:-15927531 | Msa0106490:CDS |
| GCACCAGGAGTAAGGTTTGA+AGG | 0.495370 | 1_3:+15927657 | None:intergenic |
| AACTTGCAGCACTACCTCTC+TGG | 0.498004 | 1_3:+15926572 | None:intergenic |
| GGGTTGCAATAGTCGAAAGC+TGG | 0.499258 | 1_3:+15927979 | None:intergenic |
| TAACAGCAGAAGAAAGAGAA+AGG | 0.504497 | 1_3:-15926975 | Msa0106490:CDS |
| GAACTGAACACCTATATCTC+TGG | 0.504709 | 1_3:+15927473 | None:intergenic |
| ACTCTACAGAATGGATTGGT+TGG | 0.509007 | 1_3:+15926925 | None:intergenic |
| CATAGCAAGGCCCTTCGGTA+CGG | 0.516273 | 1_3:+15927745 | None:intergenic |
| TAAACTCAACCACGTTAACT+GGG | 0.517161 | 1_3:-15927541 | Msa0106490:CDS |
| TACCAATTGTCTAGTTTGAA+GGG | 0.519590 | 1_3:+15929761 | None:intergenic |
| CCTGTTCGCTGCCTATATAA+AGG | 0.526982 | 1_3:-15926687 | Msa0106490:CDS |
| TCACCTTCAAACCTTACTCC+TGG | 0.530653 | 1_3:-15927660 | Msa0106490:intron |
| AGACGCCAGACAGTGCCATC+AGG | 0.531089 | 1_3:+15927948 | None:intergenic |
| AACAGCAGAAGAAAGAGAAA+GGG | 0.540440 | 1_3:-15926974 | Msa0106490:CDS |
| ATTTGCATAGCAAGGCCCTT+CGG | 0.540781 | 1_3:+15927740 | None:intergenic |
| GTCTAGTTTGAAGGGATGAA+GGG | 0.543517 | 1_3:+15929769 | None:intergenic |
| GGTTTGAAGGTGATGAATCC+AGG | 0.544026 | 1_3:+15927670 | None:intergenic |
| GGATGATAATTTGCATAGCA+AGG | 0.545527 | 1_3:+15927732 | None:intergenic |
| AGAATGAGCTTGTGAAAAGA+AGG | 0.547922 | 1_3:+15929792 | None:intergenic |
| ATTGCAGAATTTGTTTAATG+GGG | 0.548631 | 1_3:-15927568 | Msa0106490:CDS |
| TGATTGAAAGTTGAAAACTT+TGG | 0.552047 | 1_3:+15929872 | None:intergenic |
| CTGACACGGTGCTGCAAGTG+AGG | 0.554904 | 1_3:+15926459 | None:intergenic |
| TTGCGCTATCCTAATGAGGA+AGG | 0.562431 | 1_3:-15927411 | Msa0106490:CDS |
| CGGCCCTCTTATTTATATAG+GGG | 0.563668 | 1_3:-15926895 | Msa0106490:CDS |
| CTGATTTGGTTGAGCTGACA+CGG | 0.566401 | 1_3:+15926445 | None:intergenic |
| TATATAAATAAGAGGGCCGC+AGG | 0.566564 | 1_3:+15926899 | None:intergenic |
| TTAGAGAACAATTTAGGGGA+AGG | 0.568521 | 1_3:-15926624 | Msa0106490:CDS |
| GGCCGAGCAAAGTTAAGCCA+AGG | 0.570951 | 1_3:-15926663 | Msa0106490:CDS |
| AACCGAATTTGGTTTGTCGA+TGG | 0.576855 | 1_3:-15927906 | Msa0106490:CDS |
| TGCAGAATTTGTTTAATGGG+GGG | 0.577486 | 1_3:-15927566 | Msa0106490:CDS |
| TTGCAGAATTTGTTTAATGG+GGG | 0.578544 | 1_3:-15927567 | Msa0106490:CDS |
| GCCATGAGAAGCCGTACCGA+AGG | 0.579614 | 1_3:-15927756 | Msa0106490:intron |
| TGCGCTATCCTAATGAGGAA+GGG | 0.580496 | 1_3:-15927410 | Msa0106490:CDS |
| GAAATTGCGCTATCCTAATG+AGG | 0.581484 | 1_3:-15927415 | Msa0106490:CDS |
| TTTGCAGAAAAGAATTTGAA+CGG | 0.582980 | 1_3:-15926756 | Msa0106490:CDS |
| GGTTGCAATAGTCGAAAGCT+GGG | 0.584695 | 1_3:+15927980 | None:intergenic |
| TGATGAATCCAGGAATTCAA+AGG | 0.585718 | 1_3:+15927680 | None:intergenic |
| GCGCTATCCTAATGAGGAAG+GGG | 0.586754 | 1_3:-15927409 | Msa0106490:intron |
| GACAACTCTACAGAATGGAT+TGG | 0.593488 | 1_3:+15926921 | None:intergenic |
| TTTGGCTTGGCTGTGAAGAA+GGG | 0.594915 | 1_3:+15926508 | None:intergenic |
| CGATATCTCCCCAGTTAACG+TGG | 0.595115 | 1_3:+15927532 | None:intergenic |
| TAGAAAGTATCCAATGCCAA+TGG | 0.595339 | 1_3:+15927857 | None:intergenic |
| CGCAGGACAACTCTACAGAA+TGG | 0.599765 | 1_3:+15926916 | None:intergenic |
| GCAACCCTCACTGTTCCTGA+TGG | 0.602871 | 1_3:-15927963 | Msa0106490:CDS |
| CATCCCCTATATAAATAAGA+GGG | 0.603183 | 1_3:+15926892 | None:intergenic |
| TTAAGCTTCAGATCTCTGAT+GGG | 0.604595 | 1_3:-15926719 | Msa0106490:CDS |
| GCGCAATTTCAATCCTTCAG+TGG | 0.610517 | 1_3:+15927428 | None:intergenic |
| GATGGAGTATGATTCTTCGC+TGG | 0.611475 | 1_3:+15927591 | None:intergenic |
| CCATGAGAAGCCGTACCGAA+GGG | 0.614066 | 1_3:-15927755 | Msa0106490:intron |
| AGATCTCTGATGGGAGACAG+TGG | 0.629937 | 1_3:-15926710 | Msa0106490:CDS |
| TACATTAGAGAACAATTTAG+GGG | 0.630150 | 1_3:-15926628 | Msa0106490:CDS |
| GTGTAAAAGAGGACGAGTCA+GGG | 0.630504 | 1_3:-15926539 | Msa0106490:CDS |
| GAGCAAAGTTAAGCCAAGGA+TGG | 0.643193 | 1_3:-15926659 | Msa0106490:CDS |
| AAGTTCATGAGTCTATCACT+CGG | 0.644235 | 1_3:+15930033 | None:intergenic |
| TGACACGGTGCTGCAAGTGA+GGG | 0.655075 | 1_3:+15926460 | None:intergenic |
| GTTCGCTGCCTATATAAAGG+AGG | 0.657822 | 1_3:-15926684 | Msa0106490:CDS |
| AGTGCCATCAGGAACAGTGA+GGG | 0.674235 | 1_3:+15927959 | None:intergenic |
| TGAGCTGCTTAGAACCAGAG+AGG | 0.682743 | 1_3:-15926586 | Msa0106490:CDS |
| CAGTGCCATCAGGAACAGTG+AGG | 0.694859 | 1_3:+15927958 | None:intergenic |
| TTGTGAAAAGAAGGACGAGG+AGG | 0.697547 | 1_3:+15929801 | None:intergenic |
| AGCTTGTGAAAAGAAGGACG+AGG | 0.710821 | 1_3:+15929798 | None:intergenic |
| AAACTCAACCACGTTAACTG+GGG | 0.714026 | 1_3:-15927540 | Msa0106490:CDS |
| CATTCTGTAGAGTTGTCCTG+CGG | 0.717327 | 1_3:-15926915 | Msa0106490:CDS |
| GTTAACTGGGGAGATATCGG+TGG | 0.726802 | 1_3:-15927528 | Msa0106490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTATTATTAAATAAAT+TGG | + | chr1_3:15928191-15928210 | None:intergenic | 0.0% |
| !!! | TTTTTTGTTTGTTTAATTTA+AGG | - | chr1_3:15926486-15926505 | Msa0106490:CDS | 10.0% |
| !!! | TTCATTTTTTTTTTTTGAAT+TGG | - | chr1_3:15926753-15926772 | Msa0106490:CDS | 10.0% |
| !!! | TCATTTTTTTTTTTTGAATT+GGG | - | chr1_3:15926754-15926773 | Msa0106490:CDS | 10.0% |
| !!! | ATACAATTTTAAATTGTTTT+GGG | - | chr1_3:15927575-15927594 | Msa0106490:CDS | 10.0% |
| !!! | TTTTGTTTAAAGTTTTTGAT+TGG | - | chr1_3:15926778-15926797 | Msa0106490:CDS | 15.0% |
| !!! | CACATATATTAATGATTTTA+AGG | + | chr1_3:15927230-15927249 | None:intergenic | 15.0% |
| !! | CTTAAAATCATTAATATATG+TGG | - | chr1_3:15927228-15927247 | Msa0106490:intron | 15.0% |
| !!! | CATACAATTTTAAATTGTTT+TGG | - | chr1_3:15927574-15927593 | Msa0106490:CDS | 15.0% |
| !!! | TCTTTTGATCTTTTTAATTT+TGG | - | chr1_3:15927811-15927830 | Msa0106490:CDS | 15.0% |
| !!! | TATGAATTTAAGTTTACATA+AGG | - | chr1_3:15928255-15928274 | Msa0106490:intron | 15.0% |
| !! | TTATGAGTATTACTAATATT+TGG | - | chr1_3:15928405-15928424 | Msa0106490:intron | 15.0% |
| !!! | ATAATTTTCTTAGGAAATAT+GGG | - | chr1_3:15928465-15928484 | Msa0106490:intron | 15.0% |
| !! | AAATCCAAACTTTATCAAAA+GGG | + | chr1_3:15926880-15926899 | None:intergenic | 20.0% |
| !! | AAAATCCAAACTTTATCAAA+AGG | + | chr1_3:15926881-15926900 | None:intergenic | 20.0% |
| !!! | GATAAAGTTTGGATTTTTTT+AGG | - | chr1_3:15926884-15926903 | Msa0106490:intron | 20.0% |
| !! | TTTAATTGAGACTATCATAT+TGG | - | chr1_3:15927385-15927404 | Msa0106490:intron | 20.0% |
| !!! | CTTTTTAATTTTGGTAAAAG+AGG | - | chr1_3:15927820-15927839 | Msa0106490:CDS | 20.0% |
| !!! | AAGCATAAAAGTATTTTTGT+TGG | + | chr1_3:15928236-15928255 | None:intergenic | 20.0% |
| !! | TATTTCCTAAGAAAATTATC+TGG | + | chr1_3:15928464-15928483 | None:intergenic | 20.0% |
| !!! | GATAATTTTCTTAGGAAATA+TGG | - | chr1_3:15928464-15928483 | Msa0106490:intron | 20.0% |
| !!! | TAATTTTCTTAGGAAATATG+GGG | - | chr1_3:15928466-15928485 | Msa0106490:intron | 20.0% |
| !!! | AATTTAATTTGTGTAACTGT+AGG | - | chr1_3:15929388-15929407 | Msa0106490:intron | 20.0% |
| !! | TTTACATTAGAGAACAATTT+AGG | - | chr1_3:15929839-15929858 | Msa0106490:five_prime_UTR | 20.0% |
| !! | TTACATTAGAGAACAATTTA+GGG | - | chr1_3:15929840-15929859 | Msa0106490:five_prime_UTR | 20.0% |
| ! | AGACTCATGAACTTAAAATT+AGG | - | chr1_3:15926445-15926464 | Msa0106490:CDS | 25.0% |
| ! | TTTGACTAAAAAGCTGAATA+GGG | - | chr1_3:15926523-15926542 | Msa0106490:CDS | 25.0% |
| ! | TTACTCAGATCTAAATTGTT+GGG | + | chr1_3:15926572-15926591 | None:intergenic | 25.0% |
| ! | ATTACTCAGATCTAAATTGT+TGG | + | chr1_3:15926573-15926592 | None:intergenic | 25.0% |
| ! | TGATTGAAAGTTGAAAACTT+TGG | + | chr1_3:15926600-15926619 | None:intergenic | 25.0% |
| ! | ATTCAAAGCATAATCTTAGA+AGG | + | chr1_3:15926626-15926645 | None:intergenic | 25.0% |
| ! | TTATGATTGTTGCAAGAAAA+GGG | - | chr1_3:15926813-15926832 | Msa0106490:CDS | 25.0% |
| ! | AATCCAAACTTTATCAAAAG+GGG | + | chr1_3:15926879-15926898 | None:intergenic | 25.0% |
| !!! | AATTTGATTCAGTGTTGTTT+AGG | - | chr1_3:15927011-15927030 | Msa0106490:CDS | 25.0% |
| !!! | TTTAGGTTTTGTGATTTTTC+TGG | - | chr1_3:15927028-15927047 | Msa0106490:intron | 25.0% |
| !! | TTTTAGCCCTAAAATTGAAT+TGG | - | chr1_3:15927089-15927108 | Msa0106490:intron | 25.0% |
| !! | AACCAACCAATTCAATTTTA+GGG | + | chr1_3:15927098-15927117 | None:intergenic | 25.0% |
| !! | TAACCAACCAATTCAATTTT+AGG | + | chr1_3:15927099-15927118 | None:intergenic | 25.0% |
| ! | AGTCTCAATTAAAACACATT+TGG | + | chr1_3:15927378-15927397 | None:intergenic | 25.0% |
| ! | AAAAGATCAAAAGAAGTTCA+AGG | + | chr1_3:15927805-15927824 | None:intergenic | 25.0% |
| ! | AAAACCTCTTCTATTAAGTA+TGG | - | chr1_3:15927880-15927899 | Msa0106490:CDS | 25.0% |
| ! | TTCTATTAAGTATGGAAAGA+TGG | - | chr1_3:15927888-15927907 | Msa0106490:CDS | 25.0% |
| ! | AAAAACTACTCATTTCCAAA+TGG | + | chr1_3:15927931-15927950 | None:intergenic | 25.0% |
| ! | ATAAACATGGAATCATAACA+CGG | + | chr1_3:15928326-15928345 | None:intergenic | 25.0% |
| ! | AGACAATGAAATCATAAACA+TGG | + | chr1_3:15928339-15928358 | None:intergenic | 25.0% |
| !!! | AATGTTATTTTCAATTGCAG+AGG | - | chr1_3:15928435-15928454 | Msa0106490:intron | 25.0% |
| !! | TTTCTAGTATTCACTTATGA+AGG | - | chr1_3:15928629-15928648 | Msa0106490:intron | 25.0% |
| ! | TCTTCAATGTCTTCAAAAAT+AGG | + | chr1_3:15928761-15928780 | None:intergenic | 25.0% |
| ! | TTAAACAAATTCTGCAATGA+TGG | + | chr1_3:15928899-15928918 | None:intergenic | 25.0% |
| !! | TCATTGCAGAATTTGTTTAA+TGG | - | chr1_3:15928899-15928918 | Msa0106490:intron | 25.0% |
| !! | CATTGCAGAATTTGTTTAAT+GGG | - | chr1_3:15928900-15928919 | Msa0106490:intron | 25.0% |
| !! | ATTGCAGAATTTGTTTAATG+GGG | - | chr1_3:15928901-15928920 | Msa0106490:intron | 25.0% |
| ! | TTTATATAGGGGATGTATAA+TGG | - | chr1_3:15929585-15929604 | Msa0106490:intron | 25.0% |
| ! | TTTGCAGAAAAGAATTTGAA+CGG | - | chr1_3:15929713-15929732 | Msa0106490:intron | 25.0% |
| ! | TACATTAGAGAACAATTTAG+GGG | - | chr1_3:15929841-15929860 | Msa0106490:five_prime_UTR | 25.0% |
| GTTTGACTAAAAAGCTGAAT+AGG | - | chr1_3:15926522-15926541 | Msa0106490:CDS | 30.0% | |
| ! | TACCAATTGTCTAGTTTGAA+GGG | + | chr1_3:15926711-15926730 | None:intergenic | 30.0% |
| ! | TTACCAATTGTCTAGTTTGA+AGG | + | chr1_3:15926712-15926731 | None:intergenic | 30.0% |
| GTTATGATTGTTGCAAGAAA+AGG | - | chr1_3:15926812-15926831 | Msa0106490:CDS | 30.0% | |
| ! | TTGCAAGAAAAGGGTTTTTA+GGG | - | chr1_3:15926822-15926841 | Msa0106490:CDS | 30.0% |
| ! | ATACCCCTTTTGATAAAGTT+TGG | - | chr1_3:15926873-15926892 | Msa0106490:intron | 30.0% |
| AACTCAGTGATCAAAATCAT+GGG | + | chr1_3:15926922-15926941 | None:intergenic | 30.0% | |
| AAACTCAGTGATCAAAATCA+TGG | + | chr1_3:15926923-15926942 | None:intergenic | 30.0% | |
| !! | ATGATTTTGATCACTGAGTT+TGG | - | chr1_3:15926922-15926941 | Msa0106490:CDS | 30.0% |
| TCTGTTATGATTCTTGATGA+AGG | - | chr1_3:15926949-15926968 | Msa0106490:CDS | 30.0% | |
| CTGTTATGATTCTTGATGAA+GGG | - | chr1_3:15926950-15926969 | Msa0106490:CDS | 30.0% | |
| CTTTGAATGAGAAATTCTTG+TGG | - | chr1_3:15927142-15927161 | Msa0106490:intron | 30.0% | |
| !! | TGATTTTAAGGAAAACATCG+AGG | + | chr1_3:15927218-15927237 | None:intergenic | 30.0% |
| TCTTCTCTTTCACTTAAAAC+AGG | + | chr1_3:15927314-15927333 | None:intergenic | 30.0% | |
| CACTTATTAAGTATGACCTT+TGG | - | chr1_3:15927455-15927474 | Msa0106490:CDS | 30.0% | |
| ATTAACTACCATGCTGAAAA+TGG | + | chr1_3:15927531-15927550 | None:intergenic | 30.0% | |
| ! | TTTTAAACGGGTCATATACT+CGG | + | chr1_3:15927672-15927691 | None:intergenic | 30.0% |
| !!! | AAAGGTGCGTTGTTTTTAAA+CGG | + | chr1_3:15927685-15927704 | None:intergenic | 30.0% |
| ! | ATTTTCAGTCACTCATTCAA+AGG | + | chr1_3:15927703-15927722 | None:intergenic | 30.0% |
| AAAAGAAGTTCAAGGATTTG+GGG | + | chr1_3:15927797-15927816 | None:intergenic | 30.0% | |
| CAAAAGAAGTTCAAGGATTT+GGG | + | chr1_3:15927798-15927817 | None:intergenic | 30.0% | |
| TCAAAAGAAGTTCAAGGATT+TGG | + | chr1_3:15927799-15927818 | None:intergenic | 30.0% | |
| TTGCATATCTAGGAAATTTG+AGG | + | chr1_3:15927856-15927875 | None:intergenic | 30.0% | |
| ! | GGTTTTTCATTTGCATATCT+AGG | + | chr1_3:15927866-15927885 | None:intergenic | 30.0% |
| CTTTCCATACTTAATAGAAG+AGG | + | chr1_3:15927887-15927906 | None:intergenic | 30.0% | |
| ACTAACTACCATGCTAAAAA+CGG | + | chr1_3:15927966-15927985 | None:intergenic | 30.0% | |
| ! | TTTTAAACAGGTCATGTACT+CGG | + | chr1_3:15928076-15928095 | None:intergenic | 30.0% |
| !!! | AAAGGTGCGTTTTTTTAAAC+AGG | + | chr1_3:15928088-15928107 | None:intergenic | 30.0% |
| !! | AATTGGTTTGACCTAAGTAT+GGG | + | chr1_3:15928174-15928193 | None:intergenic | 30.0% |
| !! | AAATTGGTTTGACCTAAGTA+TGG | + | chr1_3:15928175-15928194 | None:intergenic | 30.0% |
| TTTAAACTCGAGATTTGACT+CGG | + | chr1_3:15928370-15928389 | None:intergenic | 30.0% | |
| ! | GGATTCCAGATAATTTTCTT+AGG | - | chr1_3:15928456-15928475 | Msa0106490:intron | 30.0% |
| ! | TTGCAGAATTTGTTTAATGG+GGG | - | chr1_3:15928902-15928921 | Msa0106490:intron | 30.0% |
| AGAAAACTTCAAGAAAGAAG+CGG | - | chr1_3:15929101-15929120 | Msa0106490:intron | 30.0% | |
| CTTATCTAAAAGAGCTTACT+TGG | + | chr1_3:15929136-15929155 | None:intergenic | 30.0% | |
| !!! | TCACCTTTTGAAATTATGAC+CGG | - | chr1_3:15929283-15929302 | Msa0106490:intron | 30.0% |
| CATCCCCTATATAAATAAGA+GGG | + | chr1_3:15929580-15929599 | None:intergenic | 30.0% | |
| ACATCCCCTATATAAATAAG+AGG | + | chr1_3:15929581-15929600 | None:intergenic | 30.0% | |
| ATGTAAATTCATACCATCCT+TGG | + | chr1_3:15929826-15929845 | None:intergenic | 30.0% | |
| ! | TACTTTGTTTCGTGTAAAAG+AGG | - | chr1_3:15929919-15929938 | Msa0106490:five_prime_UTR | 30.0% |
| AAGTTCATGAGTCTATCACT+CGG | + | chr1_3:15926439-15926458 | None:intergenic | 35.0% | |
| AAAAAGCTGAATAGGGTTTG+AGG | - | chr1_3:15926530-15926549 | Msa0106490:CDS | 35.0% | |
| AGAATGAGCTTGTGAAAAGA+AGG | + | chr1_3:15926680-15926699 | None:intergenic | 35.0% | |
| ATCCCTTCAAACTAGACAAT+TGG | - | chr1_3:15926706-15926725 | Msa0106490:CDS | 35.0% | |
| ! | GTTGCAAGAAAAGGGTTTTT+AGG | - | chr1_3:15926821-15926840 | Msa0106490:CDS | 35.0% |
| !!! | AAAAGGGTTTTTAGGGTTTG+TGG | - | chr1_3:15926829-15926848 | Msa0106490:intron | 35.0% |
| !! | CTTTATCAAAAGGGGTATCA+GGG | + | chr1_3:15926871-15926890 | None:intergenic | 35.0% |
| !! | ACTTTATCAAAAGGGGTATC+AGG | + | chr1_3:15926872-15926891 | None:intergenic | 35.0% |
| !! | GTGTTGAAATTTTGATCACC+AGG | - | chr1_3:15927054-15927073 | Msa0106490:intron | 35.0% |
| AGCCCTAAAATTGAATTGGT+TGG | - | chr1_3:15927093-15927112 | Msa0106490:intron | 35.0% | |
| !! | GTTAGTTTGTTTGTGTCTAG+TGG | - | chr1_3:15927115-15927134 | Msa0106490:intron | 35.0% |
| TACTGGCAATAACAATCCAA+AGG | + | chr1_3:15927474-15927493 | None:intergenic | 35.0% | |
| TGTTATTGCCAGTAGCAATT+TGG | - | chr1_3:15927480-15927499 | Msa0106490:CDS | 35.0% | |
| ACACATTTCCAAATTGCTAC+TGG | + | chr1_3:15927491-15927510 | None:intergenic | 35.0% | |
| ! | ATGAATCTCCATTTTCAGCA+TGG | - | chr1_3:15927520-15927539 | Msa0106490:CDS | 35.0% |
| !!! | AAGGTGCGTTGTTTTTAAAC+GGG | + | chr1_3:15927684-15927703 | None:intergenic | 35.0% |
| ! | AAACCTTTTCTCACCAGAAA+AGG | - | chr1_3:15927769-15927788 | Msa0106490:intron | 35.0% |
| CTAGGAAATTTGAGGATTTG+CGG | + | chr1_3:15927848-15927867 | None:intergenic | 35.0% | |
| !!! | ATGAATCTCCGTTTTTAGCA+TGG | - | chr1_3:15927955-15927974 | Msa0106490:CDS | 35.0% |
| GGAAAAAACCATCAGTGATT+AGG | + | chr1_3:15928055-15928074 | None:intergenic | 35.0% | |
| AAAAGGTTGACAACCGAATT+TGG | - | chr1_3:15928552-15928571 | Msa0106490:intron | 35.0% | |
| TTTGTTCAACGTTACTCCAT+TGG | - | chr1_3:15928596-15928615 | Msa0106490:intron | 35.0% | |
| !! | TAGAAAGTATCCAATGCCAA+TGG | + | chr1_3:15928615-15928634 | None:intergenic | 35.0% |
| ! | GGATGATAATTTGCATAGCA+AGG | + | chr1_3:15928740-15928759 | None:intergenic | 35.0% |
| TGATGAATCCAGGAATTCAA+AGG | + | chr1_3:15928792-15928811 | None:intergenic | 35.0% | |
| !! | TTGCAAGACAAGGTTTTTAG+TGG | - | chr1_3:15928836-15928855 | Msa0106490:intron | 35.0% |
| !!! | CAAGGTTTTTAGTGGATCTT+TGG | - | chr1_3:15928844-15928863 | Msa0106490:intron | 35.0% |
| ! | TGCAGAATTTGTTTAATGGG+GGG | - | chr1_3:15928903-15928922 | Msa0106490:intron | 35.0% |
| TAAACTCAACCACGTTAACT+GGG | - | chr1_3:15928928-15928947 | Msa0106490:intron | 35.0% | |
| TATATCTCTGGTTGACTGAA+TGG | + | chr1_3:15928987-15929006 | None:intergenic | 35.0% | |
| ATTCAGTCAACCAGAGATAT+AGG | - | chr1_3:15928986-15929005 | Msa0106490:intron | 35.0% | |
| GAGTTTAAAAAGTCCACTGA+AGG | - | chr1_3:15929028-15929047 | Msa0106490:intron | 35.0% | |
| TTATTAACCCCTTCCTCATT+AGG | + | chr1_3:15929070-15929089 | None:intergenic | 35.0% | |
| !! | GCACTGACATTTTAGATCAA+AGG | - | chr1_3:15929185-15929204 | Msa0106490:intron | 35.0% |
| ACACCGGTCATAATTTCAAA+AGG | + | chr1_3:15929289-15929308 | None:intergenic | 35.0% | |
| TAACAGCAGAAGAAAGAGAA+AGG | - | chr1_3:15929494-15929513 | Msa0106490:intron | 35.0% | |
| AACAGCAGAAGAAAGAGAAA+GGG | - | chr1_3:15929495-15929514 | Msa0106490:intron | 35.0% | |
| ! | CAAATTCTTTTCTGCAAAGC+AGG | + | chr1_3:15929711-15929730 | None:intergenic | 35.0% |
| AAGAATTTGAACGGTGTTTC+AGG | - | chr1_3:15929722-15929741 | Msa0106490:intron | 35.0% | |
| ATTAAGCTTCAGATCTCTGA+TGG | - | chr1_3:15929749-15929768 | Msa0106490:intron | 35.0% | |
| TTAAGCTTCAGATCTCTGAT+GGG | - | chr1_3:15929750-15929769 | Msa0106490:intron | 35.0% | |
| TTAGAGAACAATTTAGGGGA+AGG | - | chr1_3:15929845-15929864 | Msa0106490:five_prime_UTR | 35.0% | |
| ! | TTTTTGCATGGCTCACATTT+TGG | + | chr1_3:15929982-15930001 | None:intergenic | 35.0% |
| ! | GTCTAGTTTGAAGGGATGAA+GGG | + | chr1_3:15926703-15926722 | None:intergenic | 40.0% |
| ! | TGTCTAGTTTGAAGGGATGA+AGG | + | chr1_3:15926704-15926723 | None:intergenic | 40.0% |
| CTAAAATCAACTCAGCAACC+TGG | + | chr1_3:15927075-15927094 | None:intergenic | 40.0% | |
| ATCTCAAACCTAATCGCAGA+TGG | - | chr1_3:15927613-15927632 | Msa0106490:CDS | 40.0% | |
| TGCAAAAACCATCTGCGATT+AGG | + | chr1_3:15927624-15927643 | None:intergenic | 40.0% | |
| TGGTCGTGTGTGTTAATTTC+AGG | - | chr1_3:15927646-15927665 | Msa0106490:intron | 40.0% | |
| GGCTTTACATTTGCAGATCT+AGG | + | chr1_3:15927736-15927755 | None:intergenic | 40.0% | |
| !! | AAAGGTTTTCTGGTGAGAAG+AGG | + | chr1_3:15927757-15927776 | None:intergenic | 40.0% |
| ! | TCTGGTGAGAAAAGGTTTTC+TGG | + | chr1_3:15927767-15927786 | None:intergenic | 40.0% |
| !! | GAAAGATGGATTGCTATTGC+TGG | - | chr1_3:15927902-15927921 | Msa0106490:CDS | 40.0% |
| ATATCGCACCTAATCACTGA+TGG | - | chr1_3:15928044-15928063 | Msa0106490:intron | 40.0% | |
| CAAGGAAGTTTGAGGATTCT+CGG | + | chr1_3:15928121-15928140 | None:intergenic | 40.0% | |
| !! | AACCGAATTTGGTTTGTCGA+TGG | - | chr1_3:15928563-15928582 | Msa0106490:intron | 40.0% |
| AGCCATCGACAAACCAAATT+CGG | + | chr1_3:15928568-15928587 | None:intergenic | 40.0% | |
| !! | TATCGACTCCTTTGAATTCC+TGG | - | chr1_3:15928781-15928800 | Msa0106490:intron | 40.0% |
| CTAAACTCAACCACGTTAAC+TGG | - | chr1_3:15928927-15928946 | Msa0106490:intron | 40.0% | |
| AAACTCAACCACGTTAACTG+GGG | - | chr1_3:15928929-15928948 | Msa0106490:intron | 40.0% | |
| GAACTGAACACCTATATCTC+TGG | + | chr1_3:15928999-15929018 | None:intergenic | 40.0% | |
| GAAATTGCGCTATCCTAATG+AGG | - | chr1_3:15929054-15929073 | Msa0106490:intron | 40.0% | |
| ATGATGTGTGTCAGACACTT+GGG | + | chr1_3:15929215-15929234 | None:intergenic | 40.0% | |
| AATGATGTGTGTCAGACACT+TGG | + | chr1_3:15929216-15929235 | None:intergenic | 40.0% | |
| !! | ACTCTACAGAATGGATTGGT+TGG | + | chr1_3:15929547-15929566 | None:intergenic | 40.0% |
| GACAACTCTACAGAATGGAT+TGG | + | chr1_3:15929551-15929570 | None:intergenic | 40.0% | |
| TATATAAATAAGAGGGCCGC+AGG | + | chr1_3:15929573-15929592 | None:intergenic | 40.0% | |
| ! | TGCGGCCCTCTTATTTATAT+AGG | - | chr1_3:15929572-15929591 | Msa0106490:intron | 40.0% |
| ! | GCGGCCCTCTTATTTATATA+GGG | - | chr1_3:15929573-15929592 | Msa0106490:intron | 40.0% |
| ! | CGGCCCTCTTATTTATATAG+GGG | - | chr1_3:15929574-15929593 | Msa0106490:intron | 40.0% |
| ! | TTCTTTTCTGCAAAGCAGGA+AGG | + | chr1_3:15929707-15929726 | None:intergenic | 40.0% |
| ATCCTTGGCTTAACTTTGCT+CGG | + | chr1_3:15929811-15929830 | None:intergenic | 40.0% | |
| ! | GAGGGTTCAACATTTTTGCA+TGG | + | chr1_3:15929994-15930013 | None:intergenic | 40.0% |
| CTGAATAGGGTTTGAGGAGA+AGG | - | chr1_3:15926536-15926555 | Msa0106490:CDS | 45.0% | |
| TTGTGAAAAGAAGGACGAGG+AGG | + | chr1_3:15926671-15926690 | None:intergenic | 45.0% | |
| AGCTTGTGAAAAGAAGGACG+AGG | + | chr1_3:15926674-15926693 | None:intergenic | 45.0% | |
| ! | TCGCAGATGGTTTTTGCATG+TGG | - | chr1_3:15927626-15927645 | Msa0106490:intron | 45.0% |
| TTGCAGATCTAGGAAGTTCG+AGG | + | chr1_3:15927726-15927745 | None:intergenic | 45.0% | |
| !! | GCTCCTTTTCTGGTGAGAAA+AGG | + | chr1_3:15927775-15927794 | None:intergenic | 45.0% |
| TGCTATTGCTGGTAGCCATT+TGG | - | chr1_3:15927913-15927932 | Msa0106490:CDS | 45.0% | |
| ATTCTCGGTCACACGTTCAA+AGG | + | chr1_3:15928106-15928125 | None:intergenic | 45.0% | |
| CGAGAATCCTCAAACTTCCT+TGG | - | chr1_3:15928119-15928138 | Msa0106490:intron | 45.0% | |
| GCAAAGACCAAGGAAGTTTG+AGG | + | chr1_3:15928129-15928148 | None:intergenic | 45.0% | |
| GGTTGCAATAGTCGAAAGCT+GGG | + | chr1_3:15928492-15928511 | None:intergenic | 45.0% | |
| !! | GAATTTGGTTTGTCGATGGC+TGG | - | chr1_3:15928567-15928586 | Msa0106490:intron | 45.0% |
| CAACGTTACTCCATTGGCAT+TGG | - | chr1_3:15928602-15928621 | Msa0106490:intron | 45.0% | |
| ATTTGCATAGCAAGGCCCTT+CGG | + | chr1_3:15928732-15928751 | None:intergenic | 45.0% | |
| GGTTTGAAGGTGATGAATCC+AGG | + | chr1_3:15928802-15928821 | None:intergenic | 45.0% | |
| TCACCTTCAAACCTTACTCC+TGG | - | chr1_3:15928809-15928828 | Msa0106490:intron | 45.0% | |
| GATGGAGTATGATTCTTCGC+TGG | + | chr1_3:15928881-15928900 | None:intergenic | 45.0% | |
| CACGTTAACTGGGGAGATAT+CGG | - | chr1_3:15928938-15928957 | Msa0106490:intron | 45.0% | |
| GCGCAATTTCAATCCTTCAG+TGG | + | chr1_3:15929044-15929063 | None:intergenic | 45.0% | |
| TTGCGCTATCCTAATGAGGA+AGG | - | chr1_3:15929058-15929077 | Msa0106490:intron | 45.0% | |
| TGCGCTATCCTAATGAGGAA+GGG | - | chr1_3:15929059-15929078 | Msa0106490:intron | 45.0% | |
| CTTCCTGTGTCAGTGTTTCA+TGG | - | chr1_3:15929328-15929347 | Msa0106490:intron | 45.0% | |
| TAGCCATGAAACACTGACAC+AGG | + | chr1_3:15929334-15929353 | None:intergenic | 45.0% | |
| TTGTGTAACTGTAGGTGCAC+TGG | - | chr1_3:15929396-15929415 | Msa0106490:intron | 45.0% | |
| AGCCACTGCTGAAAATGATG+AGG | - | chr1_3:15929420-15929439 | Msa0106490:intron | 45.0% | |
| ! | CTCCTCATCATTTTCAGCAG+TGG | + | chr1_3:15929425-15929444 | None:intergenic | 45.0% |
| CACTGCTGAAAATGATGAGG+AGG | - | chr1_3:15929423-15929442 | Msa0106490:intron | 45.0% | |
| CATTCTGTAGAGTTGTCCTG+CGG | - | chr1_3:15929554-15929573 | Msa0106490:intron | 45.0% | |
| CAAAGCAGGAAGGCAAATAC+TGG | + | chr1_3:15929697-15929716 | None:intergenic | 45.0% | |
| CCTTTATATAGGCAGCGAAC+AGG | + | chr1_3:15929785-15929804 | None:intergenic | 45.0% | |
| CCTGTTCGCTGCCTATATAA+AGG | - | chr1_3:15929782-15929801 | Msa0106490:CDS | 45.0% | |
| GTTCGCTGCCTATATAAAGG+AGG | - | chr1_3:15929785-15929804 | Msa0106490:CDS | 45.0% | |
| TTGCTCGGCCTCCTTTATAT+AGG | + | chr1_3:15929796-15929815 | None:intergenic | 45.0% | |
| GAGCAAAGTTAAGCCAAGGA+TGG | - | chr1_3:15929810-15929829 | Msa0106490:exon | 45.0% | |
| GTGTAAAAGAGGACGAGTCA+GGG | - | chr1_3:15929930-15929949 | Msa0106490:five_prime_UTR | 45.0% | |
| !! | TTTGGCTTGGCTGTGAAGAA+GGG | + | chr1_3:15929964-15929983 | None:intergenic | 45.0% |
| !!! | TTTTGGCTTGGCTGTGAAGA+AGG | + | chr1_3:15929965-15929984 | None:intergenic | 45.0% |
| !! | CTGATTTGGTTGAGCTGACA+CGG | + | chr1_3:15930027-15930046 | None:intergenic | 45.0% |
| !! | AGGATTTGGGGCTCCTTTTC+TGG | + | chr1_3:15927785-15927804 | None:intergenic | 50.0% |
| ! | CTTCCTTGGTCTTTGCTCGT+TGG | - | chr1_3:15928133-15928152 | Msa0106490:intron | 50.0% |
| CTACCAACGAGCAAAGACCA+AGG | + | chr1_3:15928139-15928158 | None:intergenic | 50.0% | |
| !! | CTCGTTGGTAGTGCACCATT+GGG | - | chr1_3:15928148-15928167 | Msa0106490:intron | 50.0% |
| TGACCTAAGTATGGGCCCAA+TGG | + | chr1_3:15928166-15928185 | None:intergenic | 50.0% | |
| GGGTTGCAATAGTCGAAAGC+TGG | + | chr1_3:15928493-15928512 | None:intergenic | 50.0% | |
| AGTGCCATCAGGAACAGTGA+GGG | + | chr1_3:15928513-15928532 | None:intergenic | 50.0% | |
| ! | CTGGCGTCTGGGATTGAAAA+AGG | - | chr1_3:15928535-15928554 | Msa0106490:intron | 50.0% |
| GCACCAGGAGTAAGGTTTGA+AGG | + | chr1_3:15928815-15928834 | None:intergenic | 50.0% | |
| CTTGCAATGCACCAGGAGTA+AGG | + | chr1_3:15928823-15928842 | None:intergenic | 50.0% | |
| TCCTGGTGCATTGCAAGACA+AGG | - | chr1_3:15928826-15928845 | Msa0106490:intron | 50.0% | |
| ACCTTGTCTTGCAATGCACC+AGG | + | chr1_3:15928830-15928849 | None:intergenic | 50.0% | |
| CGATATCTCCCCAGTTAACG+TGG | + | chr1_3:15928940-15928959 | None:intergenic | 50.0% | |
| GTTAACTGGGGAGATATCGG+TGG | - | chr1_3:15928941-15928960 | Msa0106490:intron | 50.0% | |
| GCGCTATCCTAATGAGGAAG+GGG | - | chr1_3:15929060-15929079 | Msa0106490:intron | 50.0% | |
| AACCACACGTGTCAGTGTAG+CGG | + | chr1_3:15929250-15929269 | None:intergenic | 50.0% | |
| CGACACTGAGATGACAACAC+CGG | + | chr1_3:15929305-15929324 | None:intergenic | 50.0% | |
| CGCAGGACAACTCTACAGAA+TGG | + | chr1_3:15929556-15929575 | None:intergenic | 50.0% | |
| AGATCTCTGATGGGAGACAG+TGG | - | chr1_3:15929759-15929778 | Msa0106490:intron | 50.0% | |
| TGAGCTGCTTAGAACCAGAG+AGG | - | chr1_3:15929883-15929902 | Msa0106490:five_prime_UTR | 50.0% | |
| AACTTGCAGCACTACCTCTC+TGG | + | chr1_3:15929900-15929919 | None:intergenic | 50.0% | |
| CGTGTAAAAGAGGACGAGTC+AGG | - | chr1_3:15929929-15929948 | Msa0106490:five_prime_UTR | 50.0% | |
| !!! | GCATGGCTCACATTTTGGCT+TGG | + | chr1_3:15929977-15929996 | None:intergenic | 50.0% |
| !! | GCTCGTTGGTAGTGCACCAT+TGG | - | chr1_3:15928147-15928166 | Msa0106490:intron | 55.0% |
| GCACCATTGGGCCCATACTT+AGG | - | chr1_3:15928160-15928179 | Msa0106490:intron | 55.0% | |
| GCAACCCTCACTGTTCCTGA+TGG | - | chr1_3:15928506-15928525 | Msa0106490:intron | 55.0% | |
| CAGTGCCATCAGGAACAGTG+AGG | + | chr1_3:15928514-15928533 | None:intergenic | 55.0% | |
| CTGTTCCTGATGGCACTGTC+TGG | - | chr1_3:15928516-15928535 | Msa0106490:intron | 55.0% | |
| CCATGAGAAGCCGTACCGAA+GGG | - | chr1_3:15928714-15928733 | Msa0106490:intron | 55.0% | |
| CATAGCAAGGCCCTTCGGTA+CGG | + | chr1_3:15928727-15928746 | None:intergenic | 55.0% | |
| GGCCGAGCAAAGTTAAGCCA+AGG | - | chr1_3:15929806-15929825 | Msa0106490:CDS | 55.0% | |
| !! | TGACACGGTGCTGCAAGTGA+GGG | + | chr1_3:15930012-15930031 | None:intergenic | 55.0% |
| AGACGCCAGACAGTGCCATC+AGG | + | chr1_3:15928524-15928543 | None:intergenic | 60.0% | |
| TGATGGCACTGTCTGGCGTC+TGG | - | chr1_3:15928523-15928542 | Msa0106490:intron | 60.0% | |
| GATGGCACTGTCTGGCGTCT+GGG | - | chr1_3:15928524-15928543 | Msa0106490:intron | 60.0% | |
| GCCATGAGAAGCCGTACCGA+AGG | - | chr1_3:15928713-15928732 | Msa0106490:intron | 60.0% | |
| CCCTTCGGTACGGCTTCTCA+TGG | + | chr1_3:15928717-15928736 | None:intergenic | 60.0% | |
| TGTCAGTGTAGCGGCGGAGT+TGG | + | chr1_3:15929241-15929260 | None:intergenic | 60.0% | |
| CACACGTGTCAGTGTAGCGG+CGG | + | chr1_3:15929247-15929266 | None:intergenic | 60.0% | |
| !! | CTGACACGGTGCTGCAAGTG+AGG | + | chr1_3:15930013-15930032 | None:intergenic | 60.0% |
| CGCCGCTACACTGACACGTG+TGG | - | chr1_3:15929245-15929264 | Msa0106490:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 15926434 | 15930057 | 15926434 | ID=Msa0106490;Name=Msa0106490 |
| chr1_3 | mRNA | 15926434 | 15930057 | 15926434 | ID=Msa0106490-mRNA-1;Parent=Msa0106490;Name=Msa0106490-mRNA-1;_AED=0.28;_eAED=0.28;_QI=231|0.2|0.16|1|0.2|0.33|6|0|402 |
| chr1_3 | exon | 15926434 | 15926844 | 15926434 | ID=Msa0106490-mRNA-1:exon:6056;Parent=Msa0106490-mRNA-1 |
| chr1_3 | exon | 15926885 | 15927046 | 15926885 | ID=Msa0106490-mRNA-1:exon:6055;Parent=Msa0106490-mRNA-1 |
| chr1_3 | exon | 15927410 | 15927643 | 15927410 | ID=Msa0106490-mRNA-1:exon:6054;Parent=Msa0106490-mRNA-1 |
| chr1_3 | exon | 15927661 | 15927767 | 15927661 | ID=Msa0106490-mRNA-1:exon:6053;Parent=Msa0106490-mRNA-1 |
| chr1_3 | exon | 15927805 | 15928036 | 15927805 | ID=Msa0106490-mRNA-1:exon:6052;Parent=Msa0106490-mRNA-1 |
| chr1_3 | exon | 15929764 | 15930057 | 15929764 | ID=Msa0106490-mRNA-1:exon:6051;Parent=Msa0106490-mRNA-1 |
| chr1_3 | five_prime_UTR | 15929827 | 15930057 | 15929827 | ID=Msa0106490-mRNA-1:five_prime_utr;Parent=Msa0106490-mRNA-1 |
| chr1_3 | CDS | 15929764 | 15929826 | 15929764 | ID=Msa0106490-mRNA-1:cds;Parent=Msa0106490-mRNA-1 |
| chr1_3 | CDS | 15927805 | 15928036 | 15927805 | ID=Msa0106490-mRNA-1:cds;Parent=Msa0106490-mRNA-1 |
| chr1_3 | CDS | 15927661 | 15927767 | 15927661 | ID=Msa0106490-mRNA-1:cds;Parent=Msa0106490-mRNA-1 |
| chr1_3 | CDS | 15927410 | 15927643 | 15927410 | ID=Msa0106490-mRNA-1:cds;Parent=Msa0106490-mRNA-1 |
| chr1_3 | CDS | 15926885 | 15927046 | 15926885 | ID=Msa0106490-mRNA-1:cds;Parent=Msa0106490-mRNA-1 |
| chr1_3 | CDS | 15926434 | 15926844 | 15926434 | ID=Msa0106490-mRNA-1:cds;Parent=Msa0106490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
