AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0106750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0106750 MtrunA17_Chr6g0476171 87.027 185 24 0 80 264 54 238 5.73e-117 335
Msa0106750 MtrunA17_Chr1g0163131 33.654 312 138 10 8 267 6 300 3.86e-46 157
Msa0106750 MtrunA17_Chr1g0163101 79.221 77 16 0 4 80 1 77 9.56e-39 134
Msa0106750 MtrunA17_Chr1g0163151 39.130 184 99 5 81 260 36 210 4.30e-33 120
Msa0106750 MtrunA17_Chr1g0163201 39.344 183 100 5 81 260 207 381 5.04e-31 119
Msa0106750 MtrunA17_Chr1g0163111 37.173 191 103 8 81 260 33 217 5.50e-31 115
Msa0106750 MtrunA17_Chr1g0162151 39.130 184 88 6 77 260 37 196 1.42e-29 111
Msa0106750 MtrunA17_Chr1g0163181 33.014 209 106 6 81 260 215 418 3.82e-26 106
Msa0106750 MtrunA17_Chr1g0163181 25.641 273 155 10 29 259 14 280 3.15e-11 63.2
Msa0106750 MtrunA17_Chr1g0163091 50.000 92 44 2 81 172 41 130 1.12e-22 91.7
Msa0106750 MtrunA17_Chr1g0162161 84.444 45 7 0 35 79 3 47 1.49e-20 85.9
Msa0106750 MtrunA17_Chr1g0163141 76.596 47 11 0 34 80 9 55 1.68e-20 86.7
Msa0106750 MtrunA17_Chr6g0476181 78.261 46 10 0 35 80 1 46 4.68e-20 84.7
Msa0106750 MtrunA17_Chr1g0163081 76.087 46 11 0 35 80 5 50 7.70e-18 78.2
Msa0106750 MtrunA17_Chr1g0163251 47.826 92 46 2 81 172 202 291 1.34e-17 82.0
Msa0106750 MtrunA17_Chr1g0163251 29.615 260 146 13 29 258 14 266 3.23e-15 75.1
Msa0106750 MtrunA17_Chr1g0163121 63.265 49 18 0 34 82 9 57 8.52e-17 75.5
Msa0106750 MtrunA17_Chr1g0163261 52.273 88 38 4 80 166 204 288 1.25e-15 75.5
Msa0106750 MtrunA17_Chr1g0163261 41.176 68 39 1 16 82 5 72 2.40e-12 65.9
Msa0106750 MtrunA17_Chr1g0163231 24.638 276 168 11 16 262 5 269 3.88e-14 71.2
Msa0106750 MtrunA17_Chr1g0163231 45.783 83 41 2 80 159 196 277 2.66e-13 68.6
Msa0106750 MtrunA17_Chr1g0171611 45.122 82 43 1 80 159 184 265 4.37e-14 70.9
Msa0106750 MtrunA17_Chr1g0171611 41.538 65 37 1 16 79 5 69 9.00e-13 67.0
Msa0106750 MtrunA17_Chr5g0419211 33.333 102 64 2 71 172 4 101 2.79e-12 62.4
Msa0106750 MtrunA17_Chr5g0419201 32.773 119 68 3 1 118 1 108 7.63e-11 60.1
Msa0106750 MtrunA17_Chr4g0067431 39.189 74 43 2 15 86 10 83 9.36e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 56 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATTCACATGACAAATTTA+AGG 0.173779 1_3:+16390329 Msa0106750:CDS
TATAATCCATACCTCGATTA+TGG 0.210635 1_3:+16390561 Msa0106750:CDS
TTGCATTCTCTCACGAATTC+TGG 0.238243 1_3:-16390603 None:intergenic
TTAAACAGAGGATACCTATT+TGG 0.252919 1_3:+16389492 Msa0106750:intron
GGGAATGGTTTCTTTGTTGT+TGG 0.314235 1_3:-16389743 None:intergenic
TTTGGAAGTCTAAGCGATAT+TGG 0.316363 1_3:-16389326 None:intergenic
GGTCTGAGTTCAAAATGAAT+TGG 0.350012 1_3:+16389351 Msa0106750:CDS
TACAACGCGGTGACGATGTT+TGG 0.370214 1_3:+16389375 Msa0106750:CDS
GAAATACCTTGAAAATGCTC+TGG 0.394859 1_3:-16389764 None:intergenic
CAAAATCAATCATGTGTTCA+AGG 0.400866 1_3:+16390669 Msa0106750:CDS
AAGGTTTCAATTATTCTAGA+TGG 0.401711 1_3:+16390688 Msa0106750:CDS
ACGATGTTTGGCTTCAGAAT+TGG 0.404471 1_3:+16389387 Msa0106750:CDS
AGAGAATGCAAAGTAAAGAT+TGG 0.430681 1_3:+16390615 Msa0106750:CDS
TTGGAAGTGTTGGTGAGGAC+AGG 0.439735 1_3:+16389561 Msa0106750:CDS
ATAATCCATACCTCGATTAT+GGG 0.450089 1_3:+16390562 Msa0106750:CDS
GTCTGAGTTCAAAATGAATT+GGG 0.455385 1_3:+16389352 Msa0106750:CDS
ATAGTAATTGTGAATGAAAG+TGG 0.456460 1_3:-16389716 None:intergenic
AAGGAACATGACTTGAAAGT+TGG 0.470859 1_3:+16389659 Msa0106750:CDS
TGTCTCTCTACGAATTTCCT+TGG 0.471061 1_3:-16389284 None:intergenic
ATTCAGTGGAGTTGAAAGTA+GGG 0.477979 1_3:+16390511 Msa0106750:CDS
AGGAACATGGTTTGTAGAGG+TGG 0.484845 1_3:+16390536 Msa0106750:CDS
CCTTGAAAATGCTCTGGGAA+TGG 0.485126 1_3:-16389758 None:intergenic
GATTATGGGTGGTTCACTAA+AGG 0.486734 1_3:+16390576 Msa0106750:CDS
GGAACATGGTTTGTAGAGGT+GGG 0.494808 1_3:+16390537 Msa0106750:CDS
TGAAAGTAGGGGAAGGAACA+TGG 0.498346 1_3:+16390523 Msa0106750:CDS
TTGCGAGGGAAGGCAACGAT+TGG 0.514402 1_3:+16389542 Msa0106750:CDS
GATTCAGTGGAGTTGAAAGT+AGG 0.514511 1_3:+16390510 Msa0106750:CDS
ATATCGCTTAGACTTCCAAA+TGG 0.516695 1_3:+16389329 Msa0106750:CDS
TTCAGTGGAGTTGAAAGTAG+GGG 0.529294 1_3:+16390512 Msa0106750:CDS
GGAAATTCGTAGAGAGACAT+TGG 0.530097 1_3:+16389288 Msa0106750:CDS
TTATGCCTCTTCAACAGACT+TGG 0.532458 1_3:-16390474 None:intergenic
TACTGCCAAGTCTGTTGAAG+AGG 0.535316 1_3:+16390469 Msa0106750:CDS
TATATTTAGCGGAGATTCAG+TGG 0.538001 1_3:+16390497 Msa0106750:CDS
AAGAGGCATAATATATTTAG+CGG 0.538890 1_3:+16390486 Msa0106750:CDS
AAATACCTTGAAAATGCTCT+GGG 0.549451 1_3:-16389763 None:intergenic
AACCACCCATAATCGAGGTA+TGG 0.557688 1_3:-16390567 None:intergenic
TGTTCTTGCAGATGATTCCA+AGG 0.559130 1_3:+16389267 Msa0106750:intron
TTTGGCTTCAGAATTGGAAG+AGG 0.559399 1_3:+16389393 Msa0106750:CDS
TATCGCTTAGACTTCCAAAT+GGG 0.562651 1_3:+16389330 Msa0106750:CDS
TGGAAGTGTTGGTGAGGACA+GGG 0.564743 1_3:+16389562 Msa0106750:CDS
AAGGCAACGATTGGAAGTGT+TGG 0.567276 1_3:+16389551 Msa0106750:CDS
ATGGGTGGTTCACTAAAGGT+TGG 0.570183 1_3:+16390580 Msa0106750:CDS
CTAACAACAATATTAGGGAG+TGG 0.599682 1_3:-16390715 None:intergenic
GGACGTGGCAGTGAAGCTCA+TGG 0.611140 1_3:+16388228 Msa0106750:CDS
GGAAGGAACATGGTTTGTAG+AGG 0.613086 1_3:+16390533 Msa0106750:CDS
TACATGAATGAGTTATTGCG+AGG 0.621321 1_3:+16389527 Msa0106750:CDS
AACGATTGGAAGTGTTGGTG+AGG 0.627439 1_3:+16389556 Msa0106750:CDS
TCGAGTGTTCACAATGGACG+TGG 0.628713 1_3:+16388213 Msa0106750:CDS
ATCCATACCTCGATTATGGG+TGG 0.639230 1_3:+16390565 Msa0106750:CDS
GAATGAGTTATTGCGAGGGA+AGG 0.643476 1_3:+16389532 Msa0106750:CDS
GTGGAGTTGAAAGTAGGGGA+AGG 0.644645 1_3:+16390516 Msa0106750:CDS
GTGTTGGTGAGGACAGGGCA+TGG 0.648324 1_3:+16389567 Msa0106750:CDS
ACATGAATGAGTTATTGCGA+GGG 0.670475 1_3:+16389528 Msa0106750:CDS
TAGTGAACCACCCATAATCG+AGG 0.694278 1_3:-16390572 None:intergenic
ATGATGTCGAGTGTTCACAA+TGG 0.758516 1_3:+16388207 Msa0106750:CDS
AAAATGAATTGGGTACAACG+CGG 0.771281 1_3:+16389362 Msa0106750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGAATGAATAAGAAAAA+AGG - chr1_3:16388325-16388344 None:intergenic 15.0%
!!! TTATAATTTCTTTGATTTCA+TGG + chr1_3:16388657-16388676 Msa0106750:intron 15.0%
!! TTTCTTATAATAATTGAGAA+TGG + chr1_3:16388984-16389003 Msa0106750:intron 15.0%
!!! TTATTACAGGGTTTTAAAAA+TGG - chr1_3:16388362-16388381 None:intergenic 20.0%
!!! ATTTTAAGCAATGTATTGAT+TGG - chr1_3:16388531-16388550 None:intergenic 20.0%
!!! CAACAATGATATTTTGTTAT+TGG + chr1_3:16388554-16388573 Msa0106750:intron 20.0%
!! TACGGATTTATTATCATTAA+CGG + chr1_3:16388874-16388893 Msa0106750:intron 20.0%
!! TTTATTATCATTAACGGAAT+TGG + chr1_3:16388880-16388899 Msa0106750:intron 20.0%
!! ATCAATATCTATTTAAACAG+AGG + chr1_3:16389480-16389499 Msa0106750:intron 20.0%
!!! TATTCTTTTGAAAACCAAAT+AGG - chr1_3:16389509-16389528 None:intergenic 20.0%
!! ATATCAATAACAAAATGGAT+TGG - chr1_3:16390027-16390046 None:intergenic 20.0%
!! ATAGCATATCAATAACAAAA+TGG - chr1_3:16390032-16390051 None:intergenic 20.0%
! CATGAAAGGTTATTATTACA+GGG - chr1_3:16388374-16388393 None:intergenic 25.0%
! ACATGAAAGGTTATTATTAC+AGG - chr1_3:16388375-16388394 None:intergenic 25.0%
! TTCTAAATGAGACATATACA+TGG - chr1_3:16388505-16388524 None:intergenic 25.0%
! CATAAATTGTTCTTCACAAA+TGG + chr1_3:16388613-16388632 Msa0106750:intron 25.0%
!! TAATTTCTTTGATTTCATGG+AGG + chr1_3:16388660-16388679 Msa0106750:intron 25.0%
! TTGGTTTCATTCTATTCTAT+TGG + chr1_3:16388703-16388722 Msa0106750:intron 25.0%
! ATTCTATTGGACTTAAAATG+TGG + chr1_3:16388716-16388735 Msa0106750:intron 25.0%
! GTTGTATATTTGCTTCAATT+TGG + chr1_3:16388741-16388760 Msa0106750:intron 25.0%
! TAAAAACAAACAACCATGTA+CGG + chr1_3:16388856-16388875 Msa0106750:intron 25.0%
! AATGATAATAAATCCGTACA+TGG - chr1_3:16388872-16388891 None:intergenic 25.0%
! TACAAGAAATCTGAACTAAT+TGG - chr1_3:16389064-16389083 None:intergenic 25.0%
! TGTTTGATACATATATGCTT+TGG + chr1_3:16389120-16389139 Msa0106750:intron 25.0%
! CATTACTAATTGAAACTCAT+TGG + chr1_3:16389234-16389253 Msa0106750:intron 25.0%
! ATAGTAATTGTGAATGAAAG+TGG - chr1_3:16389719-16389738 None:intergenic 25.0%
! TATGTTTACATTACATGGAT+AGG - chr1_3:16389926-16389945 None:intergenic 25.0%
! AGTAGTATGTTTACATTACA+TGG - chr1_3:16389931-16389950 None:intergenic 25.0%
! TAGAGCAAAAGTTGTATATT+TGG - chr1_3:16389992-16390011 None:intergenic 25.0%
!!! TTGATATGCTATTTTGTACA+TGG + chr1_3:16390040-16390059 Msa0106750:intron 25.0%
! AACAAAGAAAACATTGTGTA+AGG - chr1_3:16390282-16390301 None:intergenic 25.0%
! GAATTCACATGACAAATTTA+AGG + chr1_3:16390329-16390348 Msa0106750:CDS 25.0%
!! AAGAGGCATAATATATTTAG+CGG + chr1_3:16390486-16390505 Msa0106750:CDS 25.0%
! AAGGTTTCAATTATTCTAGA+TGG + chr1_3:16390688-16390707 Msa0106750:CDS 25.0%
TAAAACGCTAATCACATGAA+AGG - chr1_3:16388388-16388407 None:intergenic 30.0%
ATACATGGTTGACTGAAAAT+GGG - chr1_3:16388490-16388509 None:intergenic 30.0%
TATACATGGTTGACTGAAAA+TGG - chr1_3:16388491-16388510 None:intergenic 30.0%
GTCTGAGTTCAAAATGAATT+GGG + chr1_3:16389352-16389371 Msa0106750:CDS 30.0%
TTAAACAGAGGATACCTATT+TGG + chr1_3:16389492-16389511 Msa0106750:intron 30.0%
AAATACCTTGAAAATGCTCT+GGG - chr1_3:16389766-16389785 None:intergenic 30.0%
! GATTAAGCAAATGATTTGTG+GGG - chr1_3:16389967-16389986 None:intergenic 30.0%
! GGATTAAGCAAATGATTTGT+GGG - chr1_3:16389968-16389987 None:intergenic 30.0%
TGGATTAAGCAAATGATTTG+TGG - chr1_3:16389969-16389988 None:intergenic 30.0%
AGCAAAAGTTGTATATTTGG+TGG - chr1_3:16389989-16390008 None:intergenic 30.0%
ACATATTCCATATCTTCTAC+TGG - chr1_3:16390147-16390166 None:intergenic 30.0%
AGTAGAAGATATGGAATATG+TGG + chr1_3:16390146-16390165 Msa0106750:intron 30.0%
GTAGAAGATATGGAATATGT+GGG + chr1_3:16390147-16390166 Msa0106750:intron 30.0%
! TTTTGTGACATCATTAGACA+AGG + chr1_3:16390353-16390372 Msa0106750:CDS 30.0%
TATAATCCATACCTCGATTA+TGG + chr1_3:16390561-16390580 Msa0106750:CDS 30.0%
ATAATCCATACCTCGATTAT+GGG + chr1_3:16390562-16390581 Msa0106750:CDS 30.0%
AGAGAATGCAAAGTAAAGAT+TGG + chr1_3:16390615-16390634 Msa0106750:CDS 30.0%
CAAAATCAATCATGTGTTCA+AGG + chr1_3:16390669-16390688 Msa0106750:CDS 30.0%
TACATGGTTGACTGAAAATG+GGG - chr1_3:16388489-16388508 None:intergenic 35.0%
ACGTTGCATACTTGCTTATT+TGG + chr1_3:16388684-16388703 Msa0106750:intron 35.0%
TAGTTCTCCACTTAAAGAGT+TGG - chr1_3:16388963-16388982 None:intergenic 35.0%
CTGATTAAGCAAACTGTGTT+GGG - chr1_3:16389147-16389166 None:intergenic 35.0%
ACTGATTAAGCAAACTGTGT+TGG - chr1_3:16389148-16389167 None:intergenic 35.0%
! ACACAGTTTGCTTAATCAGT+CGG + chr1_3:16389148-16389167 Msa0106750:intron 35.0%
TTTGGAAGTCTAAGCGATAT+TGG - chr1_3:16389329-16389348 None:intergenic 35.0%
ATATCGCTTAGACTTCCAAA+TGG + chr1_3:16389329-16389348 Msa0106750:CDS 35.0%
TATCGCTTAGACTTCCAAAT+GGG + chr1_3:16389330-16389349 Msa0106750:CDS 35.0%
! ATTTTGAACTCAGACCCATT+TGG - chr1_3:16389347-16389366 None:intergenic 35.0%
GGTCTGAGTTCAAAATGAAT+TGG + chr1_3:16389351-16389370 Msa0106750:CDS 35.0%
AAAATGAATTGGGTACAACG+CGG + chr1_3:16389362-16389381 Msa0106750:CDS 35.0%
TACATGAATGAGTTATTGCG+AGG + chr1_3:16389527-16389546 Msa0106750:CDS 35.0%
ACATGAATGAGTTATTGCGA+GGG + chr1_3:16389528-16389547 Msa0106750:CDS 35.0%
!! TGGTTGGAAGTCATTTTCAA+AGG + chr1_3:16389640-16389659 Msa0106750:CDS 35.0%
AAGGAACATGACTTGAAAGT+TGG + chr1_3:16389659-16389678 Msa0106750:CDS 35.0%
GAAATACCTTGAAAATGCTC+TGG - chr1_3:16389767-16389786 None:intergenic 35.0%
TCGGAATCAAAAGAAGAAGT+TGG - chr1_3:16390082-16390101 None:intergenic 35.0%
! ATGGAATATGTGGGCAATTT+TGG + chr1_3:16390156-16390175 Msa0106750:intron 35.0%
TTTGTTCTTGTATATGCAGC+TGG + chr1_3:16390443-16390462 Msa0106750:intron 35.0%
TATATTTAGCGGAGATTCAG+TGG + chr1_3:16390497-16390516 Msa0106750:CDS 35.0%
ATTCAGTGGAGTTGAAAGTA+GGG + chr1_3:16390511-16390530 Msa0106750:CDS 35.0%
ATGATGTCGAGTGTTCACAA+TGG + chr1_3:16388207-16388226 Msa0106750:CDS 40.0%
TCAATGCAGCAAAGCATACA+TGG - chr1_3:16388826-16388845 None:intergenic 40.0%
GGTCATACCAACTCTTTAAG+TGG + chr1_3:16388953-16388972 Msa0106750:intron 40.0%
ATTAGTGCTACGCATGACTT+TGG + chr1_3:16389083-16389102 Msa0106750:intron 40.0%
TGTTCTTGCAGATGATTCCA+AGG + chr1_3:16389267-16389286 Msa0106750:intron 40.0%
TGTCTCTCTACGAATTTCCT+TGG - chr1_3:16389287-16389306 None:intergenic 40.0%
GGAAATTCGTAGAGAGACAT+TGG + chr1_3:16389288-16389307 Msa0106750:CDS 40.0%
! ACGATGTTTGGCTTCAGAAT+TGG + chr1_3:16389387-16389406 Msa0106750:CDS 40.0%
! TTTGGCTTCAGAATTGGAAG+AGG + chr1_3:16389393-16389412 Msa0106750:CDS 40.0%
!! CAAGAGCAGTTTTGTAATGC+AGG + chr1_3:16389616-16389635 Msa0106750:CDS 40.0%
!! AGCAGTTTTGTAATGCAGGT+TGG + chr1_3:16389620-16389639 Msa0106750:CDS 40.0%
!!! GTTTTGTAATGCAGGTTGGT+TGG + chr1_3:16389624-16389643 Msa0106750:CDS 40.0%
! GGGAATGGTTTCTTTGTTGT+TGG - chr1_3:16389746-16389765 None:intergenic 40.0%
!!! CTCGTTGGTTTTCTGTATGT+CGG - chr1_3:16390101-16390120 None:intergenic 40.0%
!! TATGTGGGCAATTTTGGAGA+AGG + chr1_3:16390162-16390181 Msa0106750:intron 40.0%
AAGAGCTGCACAAAAACACA+TGG + chr1_3:16390192-16390211 Msa0106750:intron 40.0%
GCACAAAAACACATGGTCTA+AGG + chr1_3:16390199-16390218 Msa0106750:intron 40.0%
! CACACAAAGCGCTATATACA+TGG - chr1_3:16390403-16390422 None:intergenic 40.0%
TTATGCCTCTTCAACAGACT+TGG - chr1_3:16390477-16390496 None:intergenic 40.0%
GATTCAGTGGAGTTGAAAGT+AGG + chr1_3:16390510-16390529 Msa0106750:CDS 40.0%
TTCAGTGGAGTTGAAAGTAG+GGG + chr1_3:16390512-16390531 Msa0106750:CDS 40.0%
GATTATGGGTGGTTCACTAA+AGG + chr1_3:16390576-16390595 Msa0106750:CDS 40.0%
TTGCATTCTCTCACGAATTC+TGG - chr1_3:16390606-16390625 None:intergenic 40.0%
ACCACTAGTGCTCAATCACT+TGG + chr1_3:16388932-16388951 Msa0106750:intron 45.0%
ACCAAGTGATTGAGCACTAG+TGG - chr1_3:16388936-16388955 None:intergenic 45.0%
GAATGAGTTATTGCGAGGGA+AGG + chr1_3:16389532-16389551 Msa0106750:CDS 45.0%
! AAGGCAACGATTGGAAGTGT+TGG + chr1_3:16389551-16389570 Msa0106750:CDS 45.0%
!! AACGATTGGAAGTGTTGGTG+AGG + chr1_3:16389556-16389575 Msa0106750:CDS 45.0%
!! CCTTGAAAATGCTCTGGGAA+TGG - chr1_3:16389761-16389780 None:intergenic 45.0%
!! CCATTCCCAGAGCATTTTCA+AGG + chr1_3:16389758-16389777 Msa0106750:CDS 45.0%
ACAGAAAACCAACGAGTCCA+AGG + chr1_3:16390105-16390124 Msa0106750:intron 45.0%
! CTGATTTTCCTTGGACTCGT+TGG - chr1_3:16390116-16390135 None:intergenic 45.0%
!!! GCGTTGTCACTGATTTTCCT+TGG - chr1_3:16390125-16390144 None:intergenic 45.0%
GACAACGCCAGTAGAAGATA+TGG + chr1_3:16390137-16390156 Msa0106750:intron 45.0%
TACTGCCAAGTCTGTTGAAG+AGG + chr1_3:16390469-16390488 Msa0106750:CDS 45.0%
TGAAAGTAGGGGAAGGAACA+TGG + chr1_3:16390523-16390542 Msa0106750:CDS 45.0%
! GGAAGGAACATGGTTTGTAG+AGG + chr1_3:16390533-16390552 Msa0106750:CDS 45.0%
! AGGAACATGGTTTGTAGAGG+TGG + chr1_3:16390536-16390555 Msa0106750:CDS 45.0%
! GGAACATGGTTTGTAGAGGT+GGG + chr1_3:16390537-16390556 Msa0106750:CDS 45.0%
ATCCATACCTCGATTATGGG+TGG + chr1_3:16390565-16390584 Msa0106750:CDS 45.0%
AACCACCCATAATCGAGGTA+TGG - chr1_3:16390570-16390589 None:intergenic 45.0%
TAGTGAACCACCCATAATCG+AGG - chr1_3:16390575-16390594 None:intergenic 45.0%
ATGGGTGGTTCACTAAAGGT+TGG + chr1_3:16390580-16390599 Msa0106750:CDS 45.0%
TCGAGTGTTCACAATGGACG+TGG + chr1_3:16388213-16388232 Msa0106750:CDS 50.0%
GGTTAATGAGCGAATCGCTC+AGG - chr1_3:16388915-16388934 None:intergenic 50.0%
TACAACGCGGTGACGATGTT+TGG + chr1_3:16389375-16389394 Msa0106750:CDS 50.0%
!! TTGGAAGTGTTGGTGAGGAC+AGG + chr1_3:16389561-16389580 Msa0106750:CDS 50.0%
!! TGGAAGTGTTGGTGAGGACA+GGG + chr1_3:16389562-16389581 Msa0106750:CDS 50.0%
GTGGAGTTGAAAGTAGGGGA+AGG + chr1_3:16390516-16390535 Msa0106750:CDS 50.0%
TTTGCGCGCTCTCTCAGATG+TGG + chr1_3:16389416-16389435 Msa0106750:intron 55.0%
TTGCGAGGGAAGGCAACGAT+TGG + chr1_3:16389542-16389561 Msa0106750:CDS 55.0%
GGACGTGGCAGTGAAGCTCA+TGG + chr1_3:16388228-16388247 Msa0106750:CDS 60.0%
! GTGTTGGTGAGGACAGGGCA+TGG + chr1_3:16389567-16389586 Msa0106750:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 16388201 16390725 16388201 ID=Msa0106750;Name=Msa0106750
chr1_3 mRNA 16388201 16390725 16388201 ID=Msa0106750-mRNA-1;Parent=Msa0106750;Name=Msa0106750-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0|0|1|1|1|5|0|279
chr1_3 exon 16388201 16388302 16388201 ID=Msa0106750-mRNA-1:exon:6215;Parent=Msa0106750-mRNA-1
chr1_3 exon 16389278 16389414 16389278 ID=Msa0106750-mRNA-1:exon:6216;Parent=Msa0106750-mRNA-1
chr1_3 exon 16389502 16389779 16389502 ID=Msa0106750-mRNA-1:exon:6217;Parent=Msa0106750-mRNA-1
chr1_3 exon 16390316 16390374 16390316 ID=Msa0106750-mRNA-1:exon:6218;Parent=Msa0106750-mRNA-1
chr1_3 exon 16390462 16390725 16390462 ID=Msa0106750-mRNA-1:exon:6219;Parent=Msa0106750-mRNA-1
chr1_3 CDS 16388201 16388302 16388201 ID=Msa0106750-mRNA-1:cds;Parent=Msa0106750-mRNA-1
chr1_3 CDS 16389278 16389414 16389278 ID=Msa0106750-mRNA-1:cds;Parent=Msa0106750-mRNA-1
chr1_3 CDS 16389502 16389779 16389502 ID=Msa0106750-mRNA-1:cds;Parent=Msa0106750-mRNA-1
chr1_3 CDS 16390316 16390374 16390316 ID=Msa0106750-mRNA-1:cds;Parent=Msa0106750-mRNA-1
chr1_3 CDS 16390462 16390725 16390462 ID=Msa0106750-mRNA-1:cds;Parent=Msa0106750-mRNA-1
Gene Sequence

>Msa0106750

ATGAGCATGATGTCGAGTGTTCACAATGGACGTGGCAGTGAAGCTCATGGAATGCATTTCTATCTAACTATTCAACTTCGTCAGTTGCAAGATGCAGAGTTTATGATTCCAAGGAAATTCGTAGAGAGACATTGGAAAGATGTATCAAATCCAATATCGCTTAGACTTCCAAATGGGTCTGAGTTCAAAATGAATTGGGTACAACGCGGTGACGATGTTTGGCTTCAGAATTGGAAGAGGATACCTATTTGGTTTTCAAAAGAATACATGAATGAGTTATTGCGAGGGAAGGCAACGATTGGAAGTGTTGGTGAGGACAGGGCATGGTACGTGACGTTAAACTTTGATAAAAGCAAGAGCAGTTTTGTAATGCAGGTTGGTTGGAAGTCATTTTCAAAGGAACATGACTTGAAAGTTGGTGATGTATGTAAATTTGATACGACTCAACGCGAACCACTTTCATTCACAATTACTATTATTCCAACAACAAAGAAACCATTCCCAGAGCATTTTCAAGATTCTGTAAGTACGAATTCACATGACAAATTTAAGGTTTTTGTGACATCATTAGACAAGCTGGTTGTACTGCCAAGTCTGTTGAAGAGGCATAATATATTTAGCGGAGATTCAGTGGAGTTGAAAGTAGGGGAAGGAACATGGTTTGTAGAGGTGGGTTATAATCCATACCTCGATTATGGGTGGTTCACTAAAGGTTGGCCAGAATTCGTGAGAGAATGCAAAGTAAAGATTGGAGACACTTGTTTGTTTGAGATGATTGATGTTCAAAATCAATCATGTGTTCAAGGTTTCAATTATTCTAGATGGAAAGCCACTCCCTAA
Protein sequence

>Msa0106750

MSMMSSVHNGRGSEAHGMHFYLTIQLRQLQDAEFMIPRKFVERHWKDVSNPISLRLPNGSEFKMNWVQRGDDVWLQNWKRIPIWFSKEYMNELLRGKATIGSVGEDRAWYVTLNFDKSKSSFVMQVGWKSFSKEHDLKVGDVCKFDTTQREPLSFTITIIPTTKKPFPEHFQDSVSTNSHDKFKVFVTSLDKLVVLPSLLKRHNIFSGDSVELKVGEGTWFVEVGYNPYLDYGWFTKGWPEFVRECKVKIGDTCLFEMIDVQNQSCVQGFNYSRWKATP*