Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106760 | A0A396JPN4 | 71.181 | 288 | 47 | 3 | 171 | 424 | 20 | 305 | 1.64e-135 | 406 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0106760 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106760 | MtrunA17_Chr1g0163181 | 71.181 | 288 | 47 | 3 | 171 | 424 | 20 | 305 | 3.15e-139 | 406 |
| Msa0106760 | MtrunA17_Chr1g0163201 | 70.790 | 291 | 58 | 5 | 159 | 423 | 7 | 296 | 5.63e-132 | 386 |
| Msa0106760 | MtrunA17_Chr1g0163251 | 53.818 | 275 | 106 | 3 | 171 | 425 | 20 | 293 | 3.78e-94 | 289 |
| Msa0106760 | MtrunA17_Chr1g0163261 | 44.014 | 284 | 130 | 4 | 171 | 430 | 24 | 302 | 1.55e-74 | 235 |
| Msa0106760 | MtrunA17_Chr1g0163231 | 47.876 | 259 | 117 | 6 | 171 | 413 | 24 | 280 | 7.14e-73 | 231 |
| Msa0106760 | MtrunA17_Chr1g0171611 | 46.125 | 271 | 130 | 6 | 171 | 437 | 24 | 282 | 3.79e-71 | 226 |
| Msa0106760 | MtrunA17_Chr1g0163111 | 80.000 | 120 | 21 | 1 | 299 | 418 | 1 | 117 | 5.50e-60 | 195 |
| Msa0106760 | MtrunA17_Chr1g0163151 | 75.610 | 123 | 30 | 0 | 299 | 421 | 1 | 123 | 1.29e-59 | 194 |
| Msa0106760 | MtrunA17_Chr1g0163191 | 70.714 | 140 | 36 | 1 | 171 | 310 | 20 | 154 | 5.95e-58 | 187 |
| Msa0106760 | MtrunA17_Chr1g0163241 | 78.704 | 108 | 22 | 1 | 170 | 276 | 21 | 128 | 3.11e-52 | 173 |
| Msa0106760 | MtrunA17_Chr1g0163091 | 41.176 | 153 | 80 | 3 | 299 | 442 | 1 | 152 | 3.96e-33 | 122 |
| Msa0106760 | MtrunA17_Chr3g0131891 | 32.616 | 279 | 148 | 8 | 172 | 416 | 35 | 307 | 1.79e-32 | 125 |
| Msa0106760 | MtrunA17_Chr7g0233521 | 32.443 | 262 | 156 | 7 | 172 | 412 | 2 | 263 | 3.62e-31 | 120 |
| Msa0106760 | MtrunA17_Chr7g0233541 | 34.276 | 283 | 140 | 10 | 172 | 412 | 2 | 280 | 5.07e-31 | 120 |
| Msa0106760 | MtrunA17_Chr1g0163131 | 31.560 | 282 | 150 | 11 | 172 | 415 | 34 | 310 | 8.19e-31 | 120 |
| Msa0106760 | MtrunA17_Chr7g0233561 | 29.693 | 293 | 166 | 7 | 169 | 422 | 31 | 322 | 4.65e-30 | 119 |
| Msa0106760 | MtrunA17_Chr1g0162151 | 41.892 | 148 | 79 | 2 | 299 | 441 | 1 | 146 | 1.09e-29 | 115 |
| Msa0106760 | MtrunA17_Chr7g0233531 | 34.340 | 265 | 147 | 9 | 172 | 412 | 2 | 263 | 1.52e-27 | 110 |
| Msa0106760 | MtrunA17_Chr8g0390841 | 28.621 | 290 | 147 | 10 | 171 | 412 | 54 | 331 | 4.07e-27 | 113 |
| Msa0106760 | MtrunA17_Chr1g0163101 | 48.214 | 112 | 54 | 3 | 172 | 283 | 33 | 140 | 6.55e-27 | 106 |
| Msa0106760 | MtrunA17_Chr1g0163121 | 46.429 | 112 | 55 | 2 | 172 | 283 | 11 | 117 | 1.45e-25 | 101 |
| Msa0106760 | MtrunA17_Chr1g0162161 | 42.982 | 114 | 60 | 3 | 170 | 283 | 2 | 110 | 2.88e-25 | 101 |
| Msa0106760 | MtrunA17_Chr1g0208771 | 30.479 | 292 | 144 | 11 | 170 | 413 | 11 | 291 | 3.09e-25 | 107 |
| Msa0106760 | MtrunA17_Chr3g0103171 | 26.766 | 269 | 165 | 7 | 168 | 410 | 2 | 264 | 1.23e-24 | 102 |
| Msa0106760 | MtrunA17_Chr6g0476181 | 38.732 | 142 | 80 | 3 | 172 | 313 | 2 | 136 | 5.12e-24 | 97.8 |
| Msa0106760 | MtrunA17_Chr1g0163081 | 41.228 | 114 | 62 | 2 | 170 | 283 | 4 | 112 | 1.21e-23 | 96.3 |
| Msa0106760 | MtrunA17_Chr1g0163071 | 25.478 | 314 | 174 | 8 | 172 | 431 | 2 | 309 | 7.83e-21 | 92.8 |
| Msa0106760 | MtrunA17_Chr4g0067431 | 27.562 | 283 | 160 | 10 | 171 | 410 | 30 | 310 | 1.27e-20 | 92.4 |
| Msa0106760 | MtrunA17_Chr3g0103181 | 25.097 | 259 | 170 | 7 | 171 | 410 | 25 | 278 | 1.73e-20 | 91.3 |
| Msa0106760 | MtrunA17_Chr1g0163221 | 27.206 | 272 | 156 | 9 | 172 | 410 | 27 | 289 | 2.95e-20 | 91.7 |
| Msa0106760 | MtrunA17_Chr6g0476171 | 41.228 | 114 | 65 | 2 | 307 | 418 | 28 | 141 | 6.49e-20 | 89.0 |
| Msa0106760 | MtrunA17_Chr1g0163161 | 43.000 | 100 | 53 | 3 | 184 | 283 | 1 | 96 | 1.08e-19 | 85.1 |
| Msa0106760 | MtrunA17_Chr1g0163141 | 38.931 | 131 | 73 | 2 | 172 | 302 | 11 | 134 | 1.48e-19 | 86.3 |
| Msa0106760 | MtrunA17_Chr3g0103151 | 32.143 | 140 | 80 | 3 | 171 | 306 | 25 | 153 | 1.50e-18 | 82.4 |
| Msa0106760 | MtrunA17_Chr3g0103191 | 35.652 | 115 | 63 | 2 | 171 | 283 | 25 | 130 | 7.30e-18 | 82.8 |
| Msa0106760 | MtrunA17_Chr7g0233571 | 48.193 | 83 | 41 | 1 | 172 | 252 | 26 | 108 | 1.70e-17 | 81.3 |
| Msa0106760 | MtrunA17_Chr5g0419201 | 31.724 | 145 | 93 | 3 | 172 | 314 | 32 | 172 | 3.54e-17 | 79.7 |
| Msa0106760 | MtrunA17_Chr6g0467351 | 29.927 | 137 | 83 | 3 | 136 | 269 | 5 | 131 | 2.48e-13 | 69.3 |
| Msa0106760 | MtrunA17_Chr3g0077421 | 26.728 | 217 | 124 | 7 | 208 | 415 | 9 | 199 | 1.05e-12 | 67.0 |
| Msa0106760 | MtrunA17_Chr3g0077441 | 26.728 | 217 | 124 | 7 | 208 | 415 | 9 | 199 | 1.05e-12 | 67.0 |
| Msa0106760 | MtrunA17_Chr5g0429931 | 24.303 | 251 | 175 | 6 | 168 | 415 | 7 | 245 | 1.18e-12 | 67.8 |
| Msa0106760 | MtrunA17_Chr3g0077411 | 25.000 | 268 | 166 | 8 | 160 | 410 | 266 | 515 | 4.29e-12 | 68.2 |
| Msa0106760 | MtrunA17_Chr5g0419211 | 34.343 | 99 | 64 | 1 | 334 | 431 | 11 | 109 | 1.35e-11 | 61.2 |
| Msa0106760 | MtrunA17_Chr3g0077431 | 26.761 | 213 | 124 | 7 | 208 | 413 | 9 | 196 | 2.39e-11 | 62.8 |
| Msa0106760 | MtrunA17_Chr3g0077461 | 25.794 | 252 | 142 | 9 | 160 | 401 | 241 | 457 | 7.83e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 82 sgRNAs with CRISPR-Local
Find 330 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGGGCTTGGTTTGTTTA+TGG | 0.106740 | 1_3:-16419650 | None:intergenic |
| CAACACCGTTTGGAAATTTA+AGG | 0.151014 | 1_3:-16418426 | None:intergenic |
| TTTCCGAGTTAAATCATTTC+TGG | 0.164144 | 1_3:-16414303 | None:intergenic |
| TTTGCAAAGTCTTTCAAATA+TGG | 0.208675 | 1_3:+16418511 | Msa0106760:CDS |
| CTGCCTCTTTCTTCTTGTTT+CGG | 0.257218 | 1_3:-16415098 | None:intergenic |
| TTCATCAACTGATTTGATAT+TGG | 0.261684 | 1_3:-16418617 | None:intergenic |
| TTTCTGGATTTCATTCTAAC+AGG | 0.272584 | 1_3:-16414287 | None:intergenic |
| TTAATGGAACTGCAACAATA+AGG | 0.277244 | 1_3:+16419449 | Msa0106760:CDS |
| TATTTCTCCACATATATCTT+AGG | 0.281171 | 1_3:-16418376 | None:intergenic |
| TGGAGAGTAATGGTGATATT+TGG | 0.287546 | 1_3:+16418467 | Msa0106760:CDS |
| GGTGATGCGCTTGTGGCGCC+TGG | 0.290096 | 1_3:+16416575 | Msa0106760:CDS |
| AGAAAACCTAGTGATTTCTT+TGG | 0.292191 | 1_3:-16419667 | None:intergenic |
| TTATGCCAATGGCTATTTCT+TGG | 0.296975 | 1_3:+16419285 | Msa0106760:CDS |
| TTTGGAAATTTAAGGAATAT+AGG | 0.302976 | 1_3:-16418418 | None:intergenic |
| CTCTTAACTTTCAAATTCAT+TGG | 0.314459 | 1_3:+16418538 | Msa0106760:CDS |
| CATTAACAGCTTCAGATGTT+AGG | 0.318603 | 1_3:-16419228 | None:intergenic |
| ATAGTAACATTGAATGAAAT+TGG | 0.319993 | 1_3:-16419619 | None:intergenic |
| TACCGAATTGCCGCCGCGCT+TGG | 0.326112 | 1_3:-16415173 | None:intergenic |
| AGATATATGTGGAGAAATAT+TGG | 0.326941 | 1_3:+16418380 | Msa0106760:CDS |
| GAAAACCTAGTGATTTCTTT+GGG | 0.344669 | 1_3:-16419666 | None:intergenic |
| TTGGAAATTTAAGGAATATA+GGG | 0.346499 | 1_3:-16418417 | None:intergenic |
| CAGGTTGATGATTCCTTGTC+TGG | 0.347140 | 1_3:+16414389 | Msa0106760:CDS |
| CCTAGTGATTTCTTTGGGCT+TGG | 0.374297 | 1_3:-16419661 | None:intergenic |
| TAATGGAACTGCAACAATAA+GGG | 0.376410 | 1_3:+16419450 | Msa0106760:CDS |
| ACCGCTGATTCCGGCGGCAG+CGG | 0.388755 | 1_3:+16415065 | Msa0106760:CDS |
| GTGAAAGAAACCGCTGATTC+CGG | 0.394281 | 1_3:+16415056 | Msa0106760:CDS |
| GCGCTTGGCTGAACTGCAAT+CGG | 0.398141 | 1_3:-16415158 | None:intergenic |
| ATAGTTTATTTCTAAAGTAT+TGG | 0.406626 | 1_3:-16418593 | None:intergenic |
| TACACTGAGAAGGATTTGAT+TGG | 0.418901 | 1_3:+16414329 | Msa0106760:CDS |
| GTGGTGGATGGAAAATATTC+AGG | 0.420444 | 1_3:+16419539 | Msa0106760:CDS |
| AGATTGCTGCCAGCGGTTAG+AGG | 0.431944 | 1_3:+16416599 | Msa0106760:CDS |
| GAAGTGAGTTTGAGGTATTA+TGG | 0.438938 | 1_3:+16419493 | Msa0106760:CDS |
| GATTCCGGCGGCAGCGGAAG+AGG | 0.442597 | 1_3:+16415071 | Msa0106760:CDS |
| GCAGGATGGCTGAGAGAGAA+AGG | 0.445381 | 1_3:+16416519 | Msa0106760:intron |
| AGCCAAGCGCGGCGGCAATT+CGG | 0.446570 | 1_3:+16415171 | Msa0106760:CDS |
| TCAAATAAATAGAGATTCAA+TGG | 0.450076 | 1_3:+16415011 | Msa0106760:intron |
| TTGTCTGGAAAACAACAAAC+TGG | 0.453539 | 1_3:+16414404 | Msa0106760:CDS |
| TAACTTGTCTGACAAGAAAC+AGG | 0.457591 | 1_3:+16414370 | Msa0106760:CDS |
| CAAAGTAGCCATGGTGAAGA+AGG | 0.465707 | 1_3:+16419195 | Msa0106760:CDS |
| GCTGAGAGAGAAAGGGAGAA+GGG | 0.466405 | 1_3:+16416527 | Msa0106760:CDS |
| GGCTGAGAGAGAAAGGGAGA+AGG | 0.467274 | 1_3:+16416526 | Msa0106760:CDS |
| AGTCATTATAACTTCAAAAG+AGG | 0.475259 | 1_3:-16419257 | None:intergenic |
| TTAACTTTCAAATTCATTGG+TGG | 0.475675 | 1_3:+16418541 | Msa0106760:CDS |
| GGAGTGTGGAAGTGAGTTTG+AGG | 0.490380 | 1_3:+16419485 | Msa0106760:CDS |
| CTCTTCATGACTTTCTTCTG+TGG | 0.498976 | 1_3:-16418701 | None:intergenic |
| GTCATTATAACTTCAAAAGA+GGG | 0.501493 | 1_3:-16419256 | None:intergenic |
| ACACTGAGAAGGATTTGATT+GGG | 0.502843 | 1_3:+16414330 | Msa0106760:CDS |
| TCCGCTGCCGCCGGAATCAG+CGG | 0.513416 | 1_3:-16415066 | None:intergenic |
| ACCGCTGGCAGCAATCTCCC+AGG | 0.515303 | 1_3:-16416593 | None:intergenic |
| AGCTCTAATAATAAGAATGA+AGG | 0.519007 | 1_3:+16414263 | Msa0106760:CDS |
| CAAACTGGTATTGACTTGTC+TGG | 0.529586 | 1_3:+16414419 | Msa0106760:CDS |
| ATATTCCTTAAATTTCCAAA+CGG | 0.536219 | 1_3:+16418421 | Msa0106760:CDS |
| AATATCAAATCAGTTGATGA+AGG | 0.540855 | 1_3:+16418619 | Msa0106760:CDS |
| AAACCGAAACAAGAAGAAAG+AGG | 0.544529 | 1_3:+16415095 | Msa0106760:CDS |
| GCCTGGGAGATTGCTGCCAG+CGG | 0.551542 | 1_3:+16416592 | Msa0106760:CDS |
| CAATAAGGGTTGGTAATGAA+AGG | 0.551596 | 1_3:+16419464 | Msa0106760:CDS |
| CAGGATGGCTGAGAGAGAAA+GGG | 0.551897 | 1_3:+16416520 | Msa0106760:intron |
| TGTGCGCGGTGATGCGCTTG+TGG | 0.554329 | 1_3:+16416568 | Msa0106760:CDS |
| GAGAGAGAAAGGGAGAAGGG+TGG | 0.555378 | 1_3:+16416530 | Msa0106760:CDS |
| CCAAGCCCAAAGAAATCACT+AGG | 0.556666 | 1_3:+16419661 | Msa0106760:CDS |
| GTAAATTTGAGATGATTCGA+CGG | 0.557247 | 1_3:+16419593 | Msa0106760:CDS |
| AATATGGTATGGGTGGTGGA+TGG | 0.557585 | 1_3:+16419527 | Msa0106760:CDS |
| TGTTCTCTTGAAAACTCACT+TGG | 0.561927 | 1_3:-16419415 | None:intergenic |
| AAGGGAGAAGGGTGGTGTGT+CGG | 0.569235 | 1_3:+16416538 | Msa0106760:CDS |
| TTCTGGATTTCATTCTAACA+GGG | 0.573037 | 1_3:-16414286 | None:intergenic |
| GGAACTGCAACAATAAGGGT+TGG | 0.581562 | 1_3:+16419454 | Msa0106760:CDS |
| TGAATTGTCTGGTAAGACAC+AGG | 0.583987 | 1_3:+16414460 | Msa0106760:CDS |
| TTCATCCTACCTCTAACCGC+TGG | 0.583998 | 1_3:-16416608 | None:intergenic |
| GAGGGTTCCTAAGATATATG+TGG | 0.586451 | 1_3:+16418369 | Msa0106760:intron |
| ATGACTCAATCTTATGCCAA+TGG | 0.587654 | 1_3:+16419274 | Msa0106760:CDS |
| GTGATGCGCTTGTGGCGCCT+GGG | 0.588583 | 1_3:+16416576 | Msa0106760:CDS |
| TGCAGTTCAGCCAAGCGCGG+CGG | 0.599589 | 1_3:+16415163 | Msa0106760:CDS |
| AGGTAGTAACAAAGTAGCCA+TGG | 0.603454 | 1_3:+16419186 | Msa0106760:intron |
| TGCTGCCAGCGGTTAGAGGT+AGG | 0.603671 | 1_3:+16416603 | Msa0106760:CDS |
| ACTTACCAAGAAATAGCCAT+TGG | 0.604417 | 1_3:-16419290 | None:intergenic |
| GGTTGGTAATGAAAGGAGTG+TGG | 0.605745 | 1_3:+16419471 | Msa0106760:CDS |
| TATGTGGAGAAATATTGGAA+AGG | 0.617787 | 1_3:+16418385 | Msa0106760:CDS |
| GGTTAGAGGTAGGATGAATG+AGG | 0.621422 | 1_3:+16416613 | Msa0106760:CDS |
| AATCCAGAAATGATTTAACT+CGG | 0.634458 | 1_3:+16414300 | Msa0106760:CDS |
| GATTGCAGTTCAGCCAAGCG+CGG | 0.635234 | 1_3:+16415160 | Msa0106760:CDS |
| AAAGAAACCGCTGATTCCGG+CGG | 0.670255 | 1_3:+16415059 | Msa0106760:CDS |
| GTGTCGGTGTCAGTTGTGCG+CGG | 0.714498 | 1_3:+16416554 | Msa0106760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAGTTTTTTTTTTTTTTTG+AGG | + | chr1_3:16414826-16414845 | Msa0106760:intron | 10.0% |
| !!! | TAGTTTTTTTTTTTTTTTGA+GGG | + | chr1_3:16414827-16414846 | Msa0106760:intron | 10.0% |
| !!! | TTTTTTTATATAGTTTATGT+TGG | - | chr1_3:16416877-16416896 | None:intergenic | 10.0% |
| !! | ATGAAGTTTATATTTATAAT+AGG | + | chr1_3:16416951-16416970 | Msa0106760:intron | 10.0% |
| !!! | TAATAAGATAATAATTTTTC+GGG | + | chr1_3:16417114-16417133 | Msa0106760:intron | 10.0% |
| !!! | TATAAAGTTAAAGATATTTT+TGG | - | chr1_3:16418011-16418030 | None:intergenic | 10.0% |
| !!! | AAAAATATGTGATTTTTTTT+TGG | + | chr1_3:16419037-16419056 | Msa0106760:intron | 10.0% |
| !! | TCAATAATCATACATTAATT+AGG | - | chr1_3:16415226-16415245 | None:intergenic | 15.0% |
| !! | TTGTTATATTCATCAAAATT+GGG | - | chr1_3:16416308-16416327 | None:intergenic | 15.0% |
| !!! | TTTGTTATATTCATCAAAAT+TGG | - | chr1_3:16416309-16416328 | None:intergenic | 15.0% |
| !!! | TTAGGAATATTGTAATTTTA+GGG | - | chr1_3:16416350-16416369 | None:intergenic | 15.0% |
| !!! | TTTAGGAATATTGTAATTTT+AGG | - | chr1_3:16416351-16416370 | None:intergenic | 15.0% |
| !! | TAAATATAAACTTCATTGTT+AGG | - | chr1_3:16416947-16416966 | None:intergenic | 15.0% |
| !!! | TCTAAAATAATAAATTTGTC+CGG | + | chr1_3:16417048-16417067 | Msa0106760:intron | 15.0% |
| !!! | AGTTTTTCAAATTTTTACAT+TGG | - | chr1_3:16417086-16417105 | None:intergenic | 15.0% |
| !! | TCTAAATTAATAAATTTCTC+CGG | + | chr1_3:16417448-16417467 | Msa0106760:intron | 15.0% |
| !!! | TGTTGAACAAAAAATATTTT+GGG | + | chr1_3:16418444-16418463 | Msa0106760:CDS | 15.0% |
| !!! | ATATTTGGTTTCAAAAAAAT+TGG | + | chr1_3:16418482-16418501 | Msa0106760:CDS | 15.0% |
| !!! | TATTTGGTTTCAAAAAAATT+GGG | + | chr1_3:16418483-16418502 | Msa0106760:CDS | 15.0% |
| !!! | TATTTTAAGGTTAAGATATT+TGG | + | chr1_3:16418568-16418587 | Msa0106760:CDS | 15.0% |
| !!! | ATAGTTTATTTCTAAAGTAT+TGG | - | chr1_3:16418596-16418615 | None:intergenic | 15.0% |
| !!! | TTCTTTCTTTCTTTTTTATT+TGG | + | chr1_3:16419686-16419705 | Msa0106760:CDS | 15.0% |
| !! | TTTATTGTTCAAAAAACCAT+AGG | + | chr1_3:16414626-16414645 | Msa0106760:intron | 20.0% |
| !! | TTATTGTTCAAAAAACCATA+GGG | + | chr1_3:16414627-16414646 | Msa0106760:intron | 20.0% |
| !! | TCAAATAAATAGAGATTCAA+TGG | + | chr1_3:16415011-16415030 | Msa0106760:intron | 20.0% |
| !! | AATACTTACAGATAACAAAT+AGG | - | chr1_3:16415345-16415364 | None:intergenic | 20.0% |
| !! | ATGATTAAGAATGAGAAAAT+TGG | + | chr1_3:16415924-16415943 | Msa0106760:intron | 20.0% |
| !! | TAAAGAAAATTATTGGATTC+AGG | + | chr1_3:16416101-16416120 | Msa0106760:intron | 20.0% |
| !!! | ATTTTAGGGTTTTTTAGATT+TGG | - | chr1_3:16416336-16416355 | None:intergenic | 20.0% |
| !!! | ATGTACGTGTATTTTTTTTA+AGG | + | chr1_3:16416782-16416801 | Msa0106760:intron | 20.0% |
| !!! | CATTAAGTTCTGATTAATTA+AGG | + | chr1_3:16416906-16416925 | Msa0106760:intron | 20.0% |
| !! | TTCTGATTAATTAAGGATTA+GGG | + | chr1_3:16416913-16416932 | Msa0106760:intron | 20.0% |
| !!! | TCTACTGTATAAACATTTTT+AGG | - | chr1_3:16416991-16417010 | None:intergenic | 20.0% |
| !! | AAACTCTTTGAATTAATACT+CGG | + | chr1_3:16417010-16417029 | Msa0106760:intron | 20.0% |
| !! | CTCTATAAATTAATAATGTC+AGG | - | chr1_3:16417475-16417494 | None:intergenic | 20.0% |
| !!! | TAATCTGCCATTTTTATATA+AGG | - | chr1_3:16417698-16417717 | None:intergenic | 20.0% |
| !! | TATATAAAAATGGCAGATTA+AGG | + | chr1_3:16417698-16417717 | Msa0106760:intron | 20.0% |
| !! | ATATAAAAATGGCAGATTAA+GGG | + | chr1_3:16417699-16417718 | Msa0106760:intron | 20.0% |
| !! | TTGGAAATTTAAGGAATATA+GGG | - | chr1_3:16418420-16418439 | None:intergenic | 20.0% |
| !! | TTTGGAAATTTAAGGAATAT+AGG | - | chr1_3:16418421-16418440 | None:intergenic | 20.0% |
| !! | ATATTCCTTAAATTTCCAAA+CGG | + | chr1_3:16418421-16418440 | Msa0106760:CDS | 20.0% |
| !!! | GTGTTGAACAAAAAATATTT+TGG | + | chr1_3:16418443-16418462 | Msa0106760:CDS | 20.0% |
| !!! | ATATGTGATTTTTTTTTGGT+AGG | + | chr1_3:16419041-16419060 | Msa0106760:intron | 20.0% |
| !! | ATAGTAACATTGAATGAAAT+TGG | - | chr1_3:16419622-16419641 | None:intergenic | 20.0% |
| !! | AGCTCTAATAATAAGAATGA+AGG | + | chr1_3:16414263-16414282 | Msa0106760:CDS | 25.0% |
| ! | AATCCAGAAATGATTTAACT+CGG | + | chr1_3:16414300-16414319 | Msa0106760:CDS | 25.0% |
| ! | ATAATTGTGAACTTCCTTAT+AGG | + | chr1_3:16414750-16414769 | Msa0106760:intron | 25.0% |
| ! | TAATTGTGAACTTCCTTATA+GGG | + | chr1_3:16414751-16414770 | Msa0106760:intron | 25.0% |
| ! | TGATGAAAATAGAAAAACGA+CGG | - | chr1_3:16414994-16415013 | None:intergenic | 25.0% |
| ! | AGAATAAGATTTAAGAACTG+CGG | + | chr1_3:16415424-16415443 | Msa0106760:intron | 25.0% |
| ! | TTGCTTACTAGTAAATGAAA+AGG | - | chr1_3:16415478-16415497 | None:intergenic | 25.0% |
| ! | TTTACTAGTAAGCAATTGTT+TGG | + | chr1_3:16415483-16415502 | Msa0106760:intron | 25.0% |
| ! | GTTCAATGGATATTATAGTT+AGG | + | chr1_3:16415530-16415549 | Msa0106760:intron | 25.0% |
| !! | ATGAAGAAAATGAGTTTTCT+AGG | - | chr1_3:16416173-16416192 | None:intergenic | 25.0% |
| !! | TTTTGTTGATATTTCCAAAC+TGG | - | chr1_3:16416230-16416249 | None:intergenic | 25.0% |
| ! | TAACAACAACAATGATCAAA+TGG | + | chr1_3:16416259-16416278 | Msa0106760:intron | 25.0% |
| !! | TCAAAATTGGGAATTTTTGT+TGG | - | chr1_3:16416296-16416315 | None:intergenic | 25.0% |
| ! | TGCAAAAAAATTATTTCAGG+AGG | + | chr1_3:16416737-16416756 | Msa0106760:intron | 25.0% |
| !! | GTTCATTTTGCAAAATCATA+TGG | + | chr1_3:16416759-16416778 | Msa0106760:intron | 25.0% |
| ! | GTTCTGATTAATTAAGGATT+AGG | + | chr1_3:16416912-16416931 | Msa0106760:intron | 25.0% |
| ! | ACTATACATACCAAACAAAA+AGG | - | chr1_3:16417368-16417387 | None:intergenic | 25.0% |
| ! | TAAATTAATAATGTCAGGAC+CGG | - | chr1_3:16417470-16417489 | None:intergenic | 25.0% |
| !!! | TTTTTATATAAGGTACTGTC+TGG | - | chr1_3:16417688-16417707 | None:intergenic | 25.0% |
| ! | GACAGTACCTTATATAAAAA+TGG | + | chr1_3:16417688-16417707 | Msa0106760:intron | 25.0% |
| !!! | ATGACACAATAAAAAGTGTT+TGG | - | chr1_3:16417860-16417879 | None:intergenic | 25.0% |
| !! | TTTTTCTGATGTTACTACTT+TGG | - | chr1_3:16417905-16417924 | None:intergenic | 25.0% |
| !!! | TAAAGATATTTTTGGTAGCA+TGG | - | chr1_3:16418003-16418022 | None:intergenic | 25.0% |
| ! | AAGATTATCCTATGAAAATC+CGG | - | chr1_3:16418211-16418230 | None:intergenic | 25.0% |
| ! | TATTTCTCCACATATATCTT+AGG | - | chr1_3:16418379-16418398 | None:intergenic | 25.0% |
| ! | AGATATATGTGGAGAAATAT+TGG | + | chr1_3:16418380-16418399 | Msa0106760:CDS | 25.0% |
| !!! | TGAACAAAAAATATTTTGGG+TGG | + | chr1_3:16418447-16418466 | Msa0106760:CDS | 25.0% |
| ! | TTTGCAAAGTCTTTCAAATA+TGG | + | chr1_3:16418511-16418530 | Msa0106760:CDS | 25.0% |
| ! | CTCTTAACTTTCAAATTCAT+TGG | + | chr1_3:16418538-16418557 | Msa0106760:CDS | 25.0% |
| ! | TTAACTTTCAAATTCATTGG+TGG | + | chr1_3:16418541-16418560 | Msa0106760:CDS | 25.0% |
| !!! | TTCATCAACTGATTTGATAT+TGG | - | chr1_3:16418620-16418639 | None:intergenic | 25.0% |
| !!! | AATATCAAATCAGTTGATGA+AGG | + | chr1_3:16418619-16418638 | Msa0106760:CDS | 25.0% |
| ! | GCAACTAAAATGATAACAAA+TGG | + | chr1_3:16418772-16418791 | Msa0106760:intron | 25.0% |
| !! | GTGATTTTTCTCTCTTTTTT+TGG | + | chr1_3:16418845-16418864 | Msa0106760:intron | 25.0% |
| !!! | TCTCTTTTTTTGGTAGATTT+AGG | + | chr1_3:16418855-16418874 | Msa0106760:intron | 25.0% |
| !!! | TACTTTTAAGAGTTATGCAA+TGG | + | chr1_3:16418933-16418952 | Msa0106760:intron | 25.0% |
| ! | AAATAGTTAATGCCTAAACT+TGG | + | chr1_3:16419162-16419181 | Msa0106760:intron | 25.0% |
| ! | GTCATTATAACTTCAAAAGA+GGG | - | chr1_3:16419259-16419278 | None:intergenic | 25.0% |
| ! | AGTCATTATAACTTCAAAAG+AGG | - | chr1_3:16419260-16419279 | None:intergenic | 25.0% |
| !! | TAAACCATTATTTGAAACAG+TGG | + | chr1_3:16419389-16419408 | Msa0106760:intron | 25.0% |
| !! | GAACACTTGAAAGATTTTAA+TGG | + | chr1_3:16419433-16419452 | Msa0106760:CDS | 25.0% |
| ! | ACCAAGAAAAAATATGGTAT+GGG | + | chr1_3:16419517-16419536 | Msa0106760:CDS | 25.0% |
| TTCTGGATTTCATTCTAACA+GGG | - | chr1_3:16414289-16414308 | None:intergenic | 30.0% | |
| TTTCTGGATTTCATTCTAAC+AGG | - | chr1_3:16414290-16414309 | None:intergenic | 30.0% | |
| TTTCCGAGTTAAATCATTTC+TGG | - | chr1_3:16414306-16414325 | None:intergenic | 30.0% | |
| TTTGATTGGGAAGAAAAATG+TGG | + | chr1_3:16414343-16414362 | Msa0106760:CDS | 30.0% | |
| !!! | CAAGTTGTTTTTGAATTGTC+TGG | + | chr1_3:16414449-16414468 | Msa0106760:CDS | 30.0% |
| TAAATAACAAGCTGAGAATG+TGG | + | chr1_3:16414502-16414521 | Msa0106760:intron | 30.0% | |
| ! | TCTAAAGCATAAAAAACCTC+AGG | - | chr1_3:16414602-16414621 | None:intergenic | 30.0% |
| !!! | TCACAACTCTTTTGATTTGT+TGG | + | chr1_3:16414724-16414743 | Msa0106760:intron | 30.0% |
| !!! | TTGTGATACTGTTTTTGAAC+TGG | + | chr1_3:16415276-16415295 | Msa0106760:intron | 30.0% |
| TTTATTGCCGAAGAAAGAAT+AGG | + | chr1_3:16415508-16415527 | Msa0106760:intron | 30.0% | |
| CATTGAACCTATTCTTTCTT+CGG | - | chr1_3:16415518-16415537 | None:intergenic | 30.0% | |
| ! | GCATATTTTGTTCTTAGCAT+AGG | + | chr1_3:16415604-16415623 | Msa0106760:intron | 30.0% |
| ! | GATGAGTAACTTTGTGATTT+TGG | + | chr1_3:16415660-16415679 | Msa0106760:intron | 30.0% |
| ! | TTGATGATACACAAATACAG+TGG | + | chr1_3:16415768-16415787 | Msa0106760:intron | 30.0% |
| ATTAGATTGCGTAACCAATT+GGG | - | chr1_3:16415868-16415887 | None:intergenic | 30.0% | |
| ATTGGACAGAATGAGAAAAT+TGG | + | chr1_3:16415942-16415961 | Msa0106760:intron | 30.0% | |
| !! | TAAAACACAACTTTGAAGCT+AGG | + | chr1_3:16416039-16416058 | Msa0106760:intron | 30.0% |
| !! | AGAATACCATGATTTGGTTT+AGG | + | chr1_3:16416128-16416147 | Msa0106760:intron | 30.0% |
| TTTAGGAGGAGATAATCTTT+AGG | + | chr1_3:16416145-16416164 | Msa0106760:intron | 30.0% | |
| ATTCCTAAATCACAAAACCA+TGG | + | chr1_3:16416362-16416381 | Msa0106760:intron | 30.0% | |
| !!! | AATCCATGGTTTTGTGATTT+AGG | - | chr1_3:16416368-16416387 | None:intergenic | 30.0% |
| GGGTGCAAAAAAATTATTTC+AGG | + | chr1_3:16416734-16416753 | Msa0106760:intron | 30.0% | |
| !!! | GTGTATTTTTTTTAAGGCCA+GGG | + | chr1_3:16416788-16416807 | Msa0106760:intron | 30.0% |
| !!! | TGTATTTTTTTTAAGGCCAG+GGG | + | chr1_3:16416789-16416808 | Msa0106760:intron | 30.0% |
| ! | TAGTTTATGTTGGATTTGCT+TGG | - | chr1_3:16416867-16416886 | None:intergenic | 30.0% |
| ! | GGAGATCCCTTTATAATTTT+CGG | + | chr1_3:16417135-16417154 | Msa0106760:intron | 30.0% |
| TTGGGACCGAAAATTATAAA+GGG | - | chr1_3:16417144-16417163 | None:intergenic | 30.0% | |
| GTACAGTAAATGTAAACAAG+AGG | - | chr1_3:16417237-16417256 | None:intergenic | 30.0% | |
| ACTACTGTATTCATATGCAT+TGG | - | chr1_3:16417281-16417300 | None:intergenic | 30.0% | |
| !! | GACTAATTTGCCTTTTTGTT+TGG | + | chr1_3:16417355-16417374 | Msa0106760:intron | 30.0% |
| !!! | CTTTTAATTTGCCACAAAAG+TGG | - | chr1_3:16417631-16417650 | None:intergenic | 30.0% |
| TACTACAATTCACTGAAAGT+TGG | - | chr1_3:16417833-16417852 | None:intergenic | 30.0% | |
| ! | CATGTCATTTCAATATGTTC+CGG | + | chr1_3:16418189-16418208 | Msa0106760:intron | 30.0% |
| ! | AATATGTTCCGGATTTTCAT+AGG | + | chr1_3:16418200-16418219 | Msa0106760:intron | 30.0% |
| TCTGAATTTCTTTATTGCAG+AGG | + | chr1_3:16418350-16418369 | Msa0106760:intron | 30.0% | |
| CTGAATTTCTTTATTGCAGA+GGG | + | chr1_3:16418351-16418370 | Msa0106760:intron | 30.0% | |
| TATGTGGAGAAATATTGGAA+AGG | + | chr1_3:16418385-16418404 | Msa0106760:CDS | 30.0% | |
| !!! | ATTTTTTGTTCAACACCGTT+TGG | - | chr1_3:16418439-16418458 | None:intergenic | 30.0% |
| !! | CATTGGTGGATCATATTTTA+AGG | + | chr1_3:16418555-16418574 | Msa0106760:CDS | 30.0% |
| !!! | GTTATCATTTTAGTTGCCTT+TGG | - | chr1_3:16418769-16418788 | None:intergenic | 30.0% |
| ! | GAAAAATCACCTGAGAATTT+TGG | - | chr1_3:16418835-16418854 | None:intergenic | 30.0% |
| ! | GTTGCAATTTTATGTCTGAA+AGG | + | chr1_3:16418959-16418978 | Msa0106760:intron | 30.0% |
| GTATCCACTGTTTCAAATAA+TGG | - | chr1_3:16419396-16419415 | None:intergenic | 30.0% | |
| TTAATGGAACTGCAACAATA+AGG | + | chr1_3:16419449-16419468 | Msa0106760:CDS | 30.0% | |
| TAATGGAACTGCAACAATAA+GGG | + | chr1_3:16419450-16419469 | Msa0106760:CDS | 30.0% | |
| TATGGCACCAAGAAAAAATA+TGG | + | chr1_3:16419511-16419530 | Msa0106760:CDS | 30.0% | |
| CACCAAGAAAAAATATGGTA+TGG | + | chr1_3:16419516-16419535 | Msa0106760:CDS | 30.0% | |
| !!! | ACCCATACCATATTTTTTCT+TGG | - | chr1_3:16419521-16419540 | None:intergenic | 30.0% |
| AAGAAAAAATATGGTATGGG+TGG | + | chr1_3:16419520-16419539 | Msa0106760:CDS | 30.0% | |
| ! | GTAAATTTGAGATGATTCGA+CGG | + | chr1_3:16419593-16419612 | Msa0106760:CDS | 30.0% |
| GAAAACCTAGTGATTTCTTT+GGG | - | chr1_3:16419669-16419688 | None:intergenic | 30.0% | |
| AGAAAACCTAGTGATTTCTT+TGG | - | chr1_3:16419670-16419689 | None:intergenic | 30.0% | |
| TCGGAAAAAATACACTGAGA+AGG | + | chr1_3:16414319-16414338 | Msa0106760:CDS | 35.0% | |
| TACACTGAGAAGGATTTGAT+TGG | + | chr1_3:16414329-16414348 | Msa0106760:CDS | 35.0% | |
| ACACTGAGAAGGATTTGATT+GGG | + | chr1_3:16414330-16414349 | Msa0106760:CDS | 35.0% | |
| ! | TAACTTGTCTGACAAGAAAC+AGG | + | chr1_3:16414370-16414389 | Msa0106760:CDS | 35.0% |
| !!! | AGTTTGTTGTTTTCCAGACA+AGG | - | chr1_3:16414405-16414424 | None:intergenic | 35.0% |
| TTGTCTGGAAAACAACAAAC+TGG | + | chr1_3:16414404-16414423 | Msa0106760:CDS | 35.0% | |
| TGTTCAAAAAACCATAGGGT+AGG | + | chr1_3:16414631-16414650 | Msa0106760:intron | 35.0% | |
| ! | TTGTGAAGAACTAGTGTTGA+AGG | - | chr1_3:16414710-16414729 | None:intergenic | 35.0% |
| !!! | CAACTCTTTTGATTTGTTGG+AGG | + | chr1_3:16414727-16414746 | Msa0106760:intron | 35.0% |
| AAACCGAAACAAGAAGAAAG+AGG | + | chr1_3:16415095-16415114 | Msa0106760:CDS | 35.0% | |
| CGAAGAAAGAATAGGTTCAA+TGG | + | chr1_3:16415516-16415535 | Msa0106760:intron | 35.0% | |
| TTAGATTGCGTAACCAATTG+GGG | - | chr1_3:16415867-16415886 | None:intergenic | 35.0% | |
| CATTAGATTGCGTAACCAAT+TGG | - | chr1_3:16415869-16415888 | None:intergenic | 35.0% | |
| GGTAACAGAATACCATGATT+TGG | + | chr1_3:16416122-16416141 | Msa0106760:intron | 35.0% | |
| !! | ATACCATGATTTGGTTTAGG+AGG | + | chr1_3:16416131-16416150 | Msa0106760:intron | 35.0% |
| GTAATGAACAATCTCCAGTT+TGG | + | chr1_3:16416213-16416232 | Msa0106760:intron | 35.0% | |
| ACATGCAAGTAATGAATCCA+TGG | - | chr1_3:16416382-16416401 | None:intergenic | 35.0% | |
| !!! | CATGTGTTGTTGTTTTGTTG+AGG | + | chr1_3:16416397-16416416 | Msa0106760:intron | 35.0% |
| TAGGATGAATGAGGTAGTAA+AGG | + | chr1_3:16416622-16416641 | Msa0106760:intron | 35.0% | |
| AAGTGAGAATGATAGAGAGA+AGG | + | chr1_3:16416665-16416684 | Msa0106760:intron | 35.0% | |
| CAAATAGTGAAATGAACCTG+CGG | + | chr1_3:16416691-16416710 | Msa0106760:intron | 35.0% | |
| !!! | CGTGTATTTTTTTTAAGGCC+AGG | + | chr1_3:16416787-16416806 | Msa0106760:intron | 35.0% |
| !!! | GTATTTTTTTTAAGGCCAGG+GGG | + | chr1_3:16416790-16416809 | Msa0106760:intron | 35.0% |
| ! | ATTTTTACATTGGCCCAAGT+CGG | - | chr1_3:16417076-16417095 | None:intergenic | 35.0% |
| CTTGGGACCGAAAATTATAA+AGG | - | chr1_3:16417145-16417164 | None:intergenic | 35.0% | |
| CTAATTTACGTTGAGTCTCA+AGG | + | chr1_3:16417303-16417322 | Msa0106760:intron | 35.0% | |
| !! | ACAAAGCAAATCCACTTTTG+TGG | + | chr1_3:16417617-16417636 | Msa0106760:intron | 35.0% |
| !! | TTCTAGCTCACATTGTAAGA+TGG | + | chr1_3:16417661-16417680 | Msa0106760:intron | 35.0% |
| GCATACACTCAAAAACACAT+TGG | - | chr1_3:16417759-16417778 | None:intergenic | 35.0% | |
| TGCTTCTGATCAGATTTACA+AGG | - | chr1_3:16417785-16417804 | None:intergenic | 35.0% | |
| ! | TGATGTTACTACTTTGGTGT+TGG | - | chr1_3:16417899-16417918 | None:intergenic | 35.0% |
| !! | GTTAAGTCTGTTTTTCTCTC+AGG | - | chr1_3:16418076-16418095 | None:intergenic | 35.0% |
| AAATGGTAAACTGATGCTAG+TGG | - | chr1_3:16418146-16418165 | None:intergenic | 35.0% | |
| ACTAGCATCAGTTTACCATT+TGG | + | chr1_3:16418145-16418164 | Msa0106760:intron | 35.0% | |
| ! | AAACTCTGATGATGACCAAA+TGG | - | chr1_3:16418163-16418182 | None:intergenic | 35.0% |
| CAACACCGTTTGGAAATTTA+AGG | - | chr1_3:16418429-16418448 | None:intergenic | 35.0% | |
| !! | ATATTTTGGGTGGAGAGTAA+TGG | + | chr1_3:16418457-16418476 | Msa0106760:CDS | 35.0% |
| TGGAGAGTAATGGTGATATT+TGG | + | chr1_3:16418467-16418486 | Msa0106760:CDS | 35.0% | |
| TGGCAAGAGAAAATTGAGTA+TGG | + | chr1_3:16418792-16418811 | Msa0106760:intron | 35.0% | |
| !!! | ATCACCTGAGAATTTTGGTT+GGG | - | chr1_3:16418830-16418849 | None:intergenic | 35.0% |
| !! | AATCACCTGAGAATTTTGGT+TGG | - | chr1_3:16418831-16418850 | None:intergenic | 35.0% |
| CATTAACAGCTTCAGATGTT+AGG | - | chr1_3:16419231-16419250 | None:intergenic | 35.0% | |
| ATGACTCAATCTTATGCCAA+TGG | + | chr1_3:16419274-16419293 | Msa0106760:CDS | 35.0% | |
| !! | TTATGCCAATGGCTATTTCT+TGG | + | chr1_3:16419285-16419304 | Msa0106760:CDS | 35.0% |
| ACTTACCAAGAAATAGCCAT+TGG | - | chr1_3:16419293-16419312 | None:intergenic | 35.0% | |
| TGTTCTCTTGAAAACTCACT+TGG | - | chr1_3:16419418-16419437 | None:intergenic | 35.0% | |
| !! | CAATAAGGGTTGGTAATGAA+AGG | + | chr1_3:16419464-16419483 | Msa0106760:CDS | 35.0% |
| ! | GAAGTGAGTTTGAGGTATTA+TGG | + | chr1_3:16419493-16419512 | Msa0106760:CDS | 35.0% |
| AAAAAATATGGTATGGGTGG+TGG | + | chr1_3:16419523-16419542 | Msa0106760:CDS | 35.0% | |
| !! | CAAACTGGTATTGACTTGTC+TGG | + | chr1_3:16414419-16414438 | Msa0106760:CDS | 40.0% |
| TGAATTGTCTGGTAAGACAC+AGG | + | chr1_3:16414460-16414479 | Msa0106760:CDS | 40.0% | |
| ! | CAGGTTGGAATTGATGTTTC+TGG | + | chr1_3:16414479-16414498 | Msa0106760:intron | 40.0% |
| CAGAGATAGAACTGCTAACA+AGG | - | chr1_3:16414532-16414551 | None:intergenic | 40.0% | |
| TGATGCAAATGAAATGCCTG+AGG | + | chr1_3:16414583-16414602 | Msa0106760:intron | 40.0% | |
| CAAAAAACCATAGGGTAGGA+AGG | + | chr1_3:16414635-16414654 | Msa0106760:intron | 40.0% | |
| ! | TGATGATGTGACTGTTTCAC+CGG | + | chr1_3:16414664-16414683 | Msa0106760:intron | 40.0% |
| TGTTTCACCGGTAATCATGA+AGG | + | chr1_3:16414676-16414695 | Msa0106760:intron | 40.0% | |
| TCCTTCTCCTTCATGATTAC+CGG | - | chr1_3:16414686-16414705 | None:intergenic | 40.0% | |
| TTGTGAACTTCCTTATAGGG+AGG | + | chr1_3:16414754-16414773 | Msa0106760:intron | 40.0% | |
| ! | CTGCCTCTTTCTTCTTGTTT+CGG | - | chr1_3:16415101-16415120 | None:intergenic | 40.0% |
| TCTGTGTTCTGCATGTGAAA+TGG | + | chr1_3:16415716-16415735 | Msa0106760:intron | 40.0% | |
| TCTCCTCCTAAACCAAATCA+TGG | - | chr1_3:16416137-16416156 | None:intergenic | 40.0% | |
| ! | TTTTGTTGAGGCATGAGAGT+TGG | + | chr1_3:16416409-16416428 | Msa0106760:intron | 40.0% |
| ! | CACGAATCTAATTTTGCCGA+CGG | - | chr1_3:16416490-16416509 | None:intergenic | 40.0% |
| AGATTCGTGTGAACATAAGC+AGG | + | chr1_3:16416501-16416520 | Msa0106760:intron | 40.0% | |
| ! | TTTTTACATTGGCCCAAGTC+GGG | - | chr1_3:16417075-16417094 | None:intergenic | 40.0% |
| ! | GCAAATTAGTCTATGCCTCT+TGG | - | chr1_3:16417346-16417365 | None:intergenic | 40.0% |
| ATGGCAGATTAAGGGATCAA+AGG | + | chr1_3:16417707-16417726 | Msa0106760:intron | 40.0% | |
| TGGCAGATTAAGGGATCAAA+GGG | + | chr1_3:16417708-16417727 | Msa0106760:intron | 40.0% | |
| GGATCAAAGGGAAATACACA+CGG | + | chr1_3:16417720-16417739 | Msa0106760:intron | 40.0% | |
| ACAATTCACTGAAAGTTGGC+TGG | - | chr1_3:16417829-16417848 | None:intergenic | 40.0% | |
| !! | CTTTGGTGTTGGATTGAACT+TGG | - | chr1_3:16417888-16417907 | None:intergenic | 40.0% |
| TCTCTACAAATGACCTGTAC+TGG | + | chr1_3:16417947-16417966 | Msa0106760:intron | 40.0% | |
| TGATGCTAGTGGTGAGTATT+GGG | - | chr1_3:16418135-16418154 | None:intergenic | 40.0% | |
| GAGGGTTCCTAAGATATATG+TGG | + | chr1_3:16418369-16418388 | Msa0106760:intron | 40.0% | |
| CTCTTCATGACTTTCTTCTG+TGG | - | chr1_3:16418704-16418723 | None:intergenic | 40.0% | |
| AAGTGATGACAGTTCAGATG+AGG | + | chr1_3:16418735-16418754 | Msa0106760:intron | 40.0% | |
| AGTTAATGCCTAAACTTGGC+AGG | + | chr1_3:16419166-16419185 | Msa0106760:intron | 40.0% | |
| TGTTACTACCTGCCAAGTTT+AGG | - | chr1_3:16419177-16419196 | None:intergenic | 40.0% | |
| AGGTAGTAACAAAGTAGCCA+TGG | + | chr1_3:16419186-16419205 | Msa0106760:intron | 40.0% | |
| !! | TTTTCTAGCCTTCTTCACCA+TGG | - | chr1_3:16419206-16419225 | None:intergenic | 40.0% |
| !! | GTGGTGGATGGAAAATATTC+AGG | + | chr1_3:16419539-16419558 | Msa0106760:CDS | 40.0% |
| !! | CTTTGGGCTTGGTTTGTTTA+TGG | - | chr1_3:16419653-16419672 | None:intergenic | 40.0% |
| !! | CAGGTTGATGATTCCTTGTC+TGG | + | chr1_3:16414389-16414408 | Msa0106760:CDS | 45.0% |
| TTGTCTGGTAAGACACAGGT+TGG | + | chr1_3:16414464-16414483 | Msa0106760:intron | 45.0% | |
| TGAGAGCTGTCAACTATGAC+AGG | - | chr1_3:16414557-16414576 | None:intergenic | 45.0% | |
| ACTAGTTCCTTCCTACCCTA+TGG | - | chr1_3:16414645-16414664 | None:intergenic | 45.0% | |
| ACCGGTAATCATGAAGGAGA+AGG | + | chr1_3:16414682-16414701 | Msa0106760:intron | 45.0% | |
| CATGGAACAACGACCCTAAA+CGG | - | chr1_3:16414952-16414971 | None:intergenic | 45.0% | |
| !! | AATGAGTACAGAGAGCACCA+TGG | - | chr1_3:16414970-16414989 | None:intergenic | 45.0% |
| !! | GTGAAAGAAACCGCTGATTC+CGG | + | chr1_3:16415056-16415075 | Msa0106760:CDS | 45.0% |
| TTCGTCCATTCATCCCCAAT+TGG | + | chr1_3:16415851-16415870 | Msa0106760:intron | 45.0% | |
| CGTAACCAATTGGGGATGAA+TGG | - | chr1_3:16415859-16415878 | None:intergenic | 45.0% | |
| !! | GAGAGTTGGTTGATGAAGAC+CGG | + | chr1_3:16416423-16416442 | Msa0106760:intron | 45.0% |
| TCGTGTGAACATAAGCAGGA+TGG | + | chr1_3:16416505-16416524 | Msa0106760:intron | 45.0% | |
| GGTTAGAGGTAGGATGAATG+AGG | + | chr1_3:16416613-16416632 | Msa0106760:CDS | 45.0% | |
| TGCTTGGTCCTATTTGTGCA+GGG | - | chr1_3:16416851-16416870 | None:intergenic | 45.0% | |
| TTGCTTGGTCCTATTTGTGC+AGG | - | chr1_3:16416852-16416871 | None:intergenic | 45.0% | |
| ACAAATGACCTGTACTGGAC+AGG | + | chr1_3:16417952-16417971 | Msa0106760:intron | 45.0% | |
| ATTACTGTCCTGTCCAGTAC+AGG | - | chr1_3:16417963-16417982 | None:intergenic | 45.0% | |
| !! | TAGTGGTGAGTATTGGGCTA+AGG | - | chr1_3:16418129-16418148 | None:intergenic | 45.0% |
| CTGATGCTAGTGGTGAGTAT+TGG | - | chr1_3:16418136-16418155 | None:intergenic | 45.0% | |
| TGATGACAGTTCAGATGAGG+TGG | + | chr1_3:16418738-16418757 | Msa0106760:intron | 45.0% | |
| AGATGAGGTGGAAATGCCAA+AGG | + | chr1_3:16418750-16418769 | Msa0106760:intron | 45.0% | |
| ACCACCCAACCAAAATTCTC+AGG | + | chr1_3:16418823-16418842 | Msa0106760:intron | 45.0% | |
| !!! | ACCTGAGAATTTTGGTTGGG+TGG | - | chr1_3:16418827-16418846 | None:intergenic | 45.0% |
| CAAAGTAGCCATGGTGAAGA+AGG | + | chr1_3:16419195-16419214 | Msa0106760:CDS | 45.0% | |
| GGAACTGCAACAATAAGGGT+TGG | + | chr1_3:16419454-16419473 | Msa0106760:CDS | 45.0% | |
| !! | GGTTGGTAATGAAAGGAGTG+TGG | + | chr1_3:16419471-16419490 | Msa0106760:CDS | 45.0% |
| !! | AATATGGTATGGGTGGTGGA+TGG | + | chr1_3:16419527-16419546 | Msa0106760:CDS | 45.0% |
| CCTAGTGATTTCTTTGGGCT+TGG | - | chr1_3:16419664-16419683 | None:intergenic | 45.0% | |
| CCAAGCCCAAAGAAATCACT+AGG | + | chr1_3:16419661-16419680 | Msa0106760:CDS | 45.0% | |
| !! | AAATTATTAAAGAAAATTAT+TGG | + | chr1_3:16416094-16416113 | Msa0106760:intron | 5.0% |
| !!! | ATAATAAGATAATAATTTTT+CGG | + | chr1_3:16417113-16417132 | Msa0106760:intron | 5.0% |
| !!! | TATTAATTTATAATTTTCTT+GGG | - | chr1_3:16417162-16417181 | None:intergenic | 5.0% |
| !!! | TTATTAATTTATAATTTTCT+TGG | - | chr1_3:16417163-16417182 | None:intergenic | 5.0% |
| !! | AAAAATAATAAATACTTAAT+TGG | + | chr1_3:16419093-16419112 | Msa0106760:intron | 5.0% |
| GGTAACGTAGCCTCCCTATA+AGG | - | chr1_3:16414767-16414786 | None:intergenic | 50.0% | |
| GGCTGCTGCTATCAGTTCAA+AGG | + | chr1_3:16414793-16414812 | Msa0106760:intron | 50.0% | |
| CAAACGGTTGCGCGTTGAAT+CGG | - | chr1_3:16414916-16414935 | None:intergenic | 50.0% | |
| ! | CGTTTAGGGTCGTTGTTCCA+TGG | + | chr1_3:16414950-16414969 | Msa0106760:intron | 50.0% |
| !! | AAAGAAACCGCTGATTCCGG+CGG | + | chr1_3:16415059-16415078 | Msa0106760:CDS | 50.0% |
| ACAAATACAGTGGCGTTGCC+AGG | + | chr1_3:16415778-16415797 | Msa0106760:intron | 50.0% | |
| !! | AGTTGGTTGATGAAGACCGG+AGG | + | chr1_3:16416426-16416445 | Msa0106760:intron | 50.0% |
| CAGGATGGCTGAGAGAGAAA+GGG | + | chr1_3:16416520-16416539 | Msa0106760:intron | 50.0% | |
| GCTGAGAGAGAAAGGGAGAA+GGG | + | chr1_3:16416527-16416546 | Msa0106760:CDS | 50.0% | |
| TTCATCCTACCTCTAACCGC+TGG | - | chr1_3:16416611-16416630 | None:intergenic | 50.0% | |
| TGCTAGACTCTGTTGGGTCA+GGG | + | chr1_3:16416714-16416733 | Msa0106760:intron | 50.0% | |
| CGGAGCTACATGTAACTGAG+GGG | - | chr1_3:16416827-16416846 | None:intergenic | 50.0% | |
| GCGGAGCTACATGTAACTGA+GGG | - | chr1_3:16416828-16416847 | None:intergenic | 50.0% | |
| GCTTGGTCCTATTTGTGCAG+GGG | - | chr1_3:16416850-16416869 | None:intergenic | 50.0% | |
| AAATTTGTCCGGTCCCGACT+TGG | + | chr1_3:16417059-16417078 | Msa0106760:intron | 50.0% | |
| AATTTGTCCGGTCCCGACTT+GGG | + | chr1_3:16417060-16417079 | Msa0106760:intron | 50.0% | |
| ACGTTGAGTCTCAAGGTTCG+CGG | + | chr1_3:16417310-16417329 | Msa0106760:intron | 50.0% | |
| GGCTAAGGCTTAGAGAAGTG+AGG | - | chr1_3:16418114-16418133 | None:intergenic | 50.0% | |
| GGAGTGTGGAAGTGAGTTTG+AGG | + | chr1_3:16419485-16419504 | Msa0106760:CDS | 50.0% | |
| GGAGGCTACGTTACCTGACA+TGG | + | chr1_3:16414772-16414791 | Msa0106760:intron | 55.0% | |
| CTGATAGCAGCAGCCATGTC+AGG | - | chr1_3:16414788-16414807 | None:intergenic | 55.0% | |
| TTGCTTGCGAAGACTGAGCG+TGG | - | chr1_3:16414888-16414907 | None:intergenic | 55.0% | |
| CGATTCAACGCGCAACCGTT+TGG | + | chr1_3:16414914-16414933 | Msa0106760:intron | 55.0% | |
| GACAAACGCGCCACCGTTTA+GGG | + | chr1_3:16414936-16414955 | Msa0106760:intron | 55.0% | |
| GGAACAACGACCCTAAACGG+TGG | - | chr1_3:16414949-16414968 | None:intergenic | 55.0% | |
| GCGCTTGGCTGAACTGCAAT+CGG | - | chr1_3:16415161-16415180 | None:intergenic | 55.0% | |
| GATTGCAGTTCAGCCAAGCG+CGG | + | chr1_3:16415160-16415179 | Msa0106760:CDS | 55.0% | |
| AAGTTTGAACCCCCTGACCC+AGG | - | chr1_3:16415806-16415825 | None:intergenic | 55.0% | |
| TGATGAAGACCGGAGGAGAG+TGG | + | chr1_3:16416433-16416452 | Msa0106760:intron | 55.0% | |
| CTCCTTCTACCACTCTCCTC+CGG | - | chr1_3:16416445-16416464 | None:intergenic | 55.0% | |
| AGGAGAGTGGTAGAAGGAGG+AGG | + | chr1_3:16416446-16416465 | Msa0106760:intron | 55.0% | |
| GGAGAGTGGTAGAAGGAGGA+GGG | + | chr1_3:16416447-16416466 | Msa0106760:intron | 55.0% | |
| GCAGGATGGCTGAGAGAGAA+AGG | + | chr1_3:16416519-16416538 | Msa0106760:intron | 55.0% | |
| GGCTGAGAGAGAAAGGGAGA+AGG | + | chr1_3:16416526-16416545 | Msa0106760:CDS | 55.0% | |
| GAGAGAGAAAGGGAGAAGGG+TGG | + | chr1_3:16416530-16416549 | Msa0106760:CDS | 55.0% | |
| AAGGGAGAAGGGTGGTGTGT+CGG | + | chr1_3:16416538-16416557 | Msa0106760:CDS | 55.0% | |
| AGATTGCTGCCAGCGGTTAG+AGG | + | chr1_3:16416599-16416618 | Msa0106760:CDS | 55.0% | |
| ! | CTGCGGTGCTAGACTCTGTT+GGG | + | chr1_3:16416708-16416727 | Msa0106760:intron | 55.0% |
| GTGCTAGACTCTGTTGGGTC+AGG | + | chr1_3:16416713-16416732 | Msa0106760:intron | 55.0% | |
| GGCGGAGCTACATGTAACTG+AGG | - | chr1_3:16416829-16416848 | None:intergenic | 55.0% | |
| TGGTCCTATTTGTGCAGGGG+CGG | - | chr1_3:16416847-16416866 | None:intergenic | 55.0% | |
| CGCGGCAACGTAATTCCAAG+AGG | + | chr1_3:16417328-16417347 | Msa0106760:intron | 55.0% | |
| CGGTGGCGCGTTTGTCCAAA+CGG | - | chr1_3:16414932-16414951 | None:intergenic | 60.0% | |
| GGACAAACGCGCCACCGTTT+AGG | + | chr1_3:16414935-16414954 | Msa0106760:intron | 60.0% | |
| ! | TTTTCCTCTTCCGCTGCCGC+CGG | - | chr1_3:16415078-16415097 | None:intergenic | 60.0% |
| AGTGGCGTTGCCAGGAACCT+GGG | + | chr1_3:16415786-16415805 | Msa0106760:intron | 60.0% | |
| GTTGCCAGGAACCTGGGTCA+GGG | + | chr1_3:16415792-16415811 | Msa0106760:intron | 60.0% | |
| TTGCCAGGAACCTGGGTCAG+GGG | + | chr1_3:16415793-16415812 | Msa0106760:intron | 60.0% | |
| GACCGGAGGAGAGTGGTAGA+AGG | + | chr1_3:16416440-16416459 | Msa0106760:intron | 60.0% | |
| CGGAGGAGAGTGGTAGAAGG+AGG | + | chr1_3:16416443-16416462 | Msa0106760:intron | 60.0% | |
| GTGCAGCGGAGAGATTCCGT+CGG | + | chr1_3:16416471-16416490 | Msa0106760:intron | 60.0% | |
| !! | GTGTCGGTGTCAGTTGTGCG+CGG | + | chr1_3:16416554-16416573 | Msa0106760:CDS | 60.0% |
| TGCTGCCAGCGGTTAGAGGT+AGG | + | chr1_3:16416603-16416622 | Msa0106760:CDS | 60.0% | |
| CCAACAGAGTCTAGCACCGC+AGG | - | chr1_3:16416710-16416729 | None:intergenic | 60.0% | |
| ! | CCTGCGGTGCTAGACTCTGT+TGG | + | chr1_3:16416707-16416726 | Msa0106760:intron | 60.0% |
| GGGGATTCAAGTGAACCCCC+TGG | - | chr1_3:16416808-16416827 | None:intergenic | 60.0% | |
| AGCTCCGCCCCTGCACAAAT+AGG | + | chr1_3:16416840-16416859 | Msa0106760:intron | 60.0% | |
| ACATTGGCCCAAGTCGGGAC+CGG | - | chr1_3:16417070-16417089 | None:intergenic | 60.0% | |
| TGCAGTTCAGCCAAGCGCGG+CGG | + | chr1_3:16415163-16415182 | Msa0106760:CDS | 65.0% | |
| AGCCAAGCGCGGCGGCAATT+CGG | + | chr1_3:16415171-16415190 | Msa0106760:CDS | 65.0% | |
| TACCGAATTGCCGCCGCGCT+TGG | - | chr1_3:16415176-16415195 | None:intergenic | 65.0% | |
| AGCGCGGCGGCAATTCGGTA+AGG | + | chr1_3:16415176-16415195 | Msa0106760:intron | 65.0% | |
| CAGTGGCGTTGCCAGGAACC+TGG | + | chr1_3:16415785-16415804 | Msa0106760:intron | 65.0% | |
| CGTTGCCAGGAACCTGGGTC+AGG | + | chr1_3:16415791-16415810 | Msa0106760:intron | 65.0% | |
| TGCCAGGAACCTGGGTCAGG+GGG | + | chr1_3:16415794-16415813 | Msa0106760:intron | 65.0% | |
| AACCCCCTGACCCAGGTTCC+TGG | - | chr1_3:16415799-16415818 | None:intergenic | 65.0% | |
| ! | AGAAGGAGGAGGGCGTGCAG+CGG | + | chr1_3:16416457-16416476 | Msa0106760:intron | 65.0% |
| TGTGCGCGGTGATGCGCTTG+TGG | + | chr1_3:16416568-16416587 | Msa0106760:CDS | 65.0% | |
| GTGATGCGCTTGTGGCGCCT+GGG | + | chr1_3:16416576-16416595 | Msa0106760:CDS | 65.0% | |
| GCCTGGGAGATTGCTGCCAG+CGG | + | chr1_3:16416592-16416611 | Msa0106760:CDS | 65.0% | |
| ACCGCTGGCAGCAATCTCCC+AGG | - | chr1_3:16416596-16416615 | None:intergenic | 65.0% | |
| !! | ACCGCTGATTCCGGCGGCAG+CGG | + | chr1_3:16415065-16415084 | Msa0106760:CDS | 70.0% |
| TCCGCTGCCGCCGGAATCAG+CGG | - | chr1_3:16415069-16415088 | None:intergenic | 70.0% | |
| GATTCCGGCGGCAGCGGAAG+AGG | + | chr1_3:16415071-16415090 | Msa0106760:CDS | 70.0% | |
| GGTGATGCGCTTGTGGCGCC+TGG | + | chr1_3:16416575-16416594 | Msa0106760:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 16414254 | 16419741 | 16414254 | ID=Msa0106760;Name=Msa0106760 |
| chr1_3 | mRNA | 16414254 | 16419741 | 16414254 | ID=Msa0106760-mRNA-1;Parent=Msa0106760;Name=Msa0106760-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0.2|0.16|0.5|1|1|6|0|442 |
| chr1_3 | exon | 16414254 | 16414481 | 16414254 | ID=Msa0106760-mRNA-1:exon:6220;Parent=Msa0106760-mRNA-1 |
| chr1_3 | exon | 16415023 | 16415192 | 16415023 | ID=Msa0106760-mRNA-1:exon:6221;Parent=Msa0106760-mRNA-1 |
| chr1_3 | exon | 16416523 | 16416634 | 16416523 | ID=Msa0106760-mRNA-1:exon:6222;Parent=Msa0106760-mRNA-1 |
| chr1_3 | exon | 16418370 | 16418736 | 16418370 | ID=Msa0106760-mRNA-1:exon:6223;Parent=Msa0106760-mRNA-1 |
| chr1_3 | exon | 16419188 | 16419306 | 16419188 | ID=Msa0106760-mRNA-1:exon:6224;Parent=Msa0106760-mRNA-1 |
| chr1_3 | exon | 16419409 | 16419741 | 16419409 | ID=Msa0106760-mRNA-1:exon:6225;Parent=Msa0106760-mRNA-1 |
| chr1_3 | CDS | 16414254 | 16414481 | 16414254 | ID=Msa0106760-mRNA-1:cds;Parent=Msa0106760-mRNA-1 |
| chr1_3 | CDS | 16415023 | 16415192 | 16415023 | ID=Msa0106760-mRNA-1:cds;Parent=Msa0106760-mRNA-1 |
| chr1_3 | CDS | 16416523 | 16416634 | 16416523 | ID=Msa0106760-mRNA-1:cds;Parent=Msa0106760-mRNA-1 |
| chr1_3 | CDS | 16418370 | 16418736 | 16418370 | ID=Msa0106760-mRNA-1:cds;Parent=Msa0106760-mRNA-1 |
| chr1_3 | CDS | 16419188 | 16419306 | 16419188 | ID=Msa0106760-mRNA-1:cds;Parent=Msa0106760-mRNA-1 |
| chr1_3 | CDS | 16419409 | 16419741 | 16419409 | ID=Msa0106760-mRNA-1:cds;Parent=Msa0106760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
