AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0106840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0106840 MtrunA17_Chr1g0163001 93.818 550 8 3 1 549 1 525 0.0 1047
Msa0106840 MtrunA17_Chr1g0199101 55.848 607 135 24 1 549 1 532 4.57e-178 513
Msa0106840 MtrunA17_Chr1g0162971 48.370 552 133 19 1 526 1 426 1.63e-133 395
Msa0106840 MtrunA17_Chr1g0210821 42.190 621 208 20 1 546 1 545 2.55e-123 374
Msa0106840 MtrunA17_Chr7g0263941 67.826 230 40 4 34 259 23 222 4.48e-105 321
Msa0106840 MtrunA17_Chr8g0342421 74.611 193 25 1 41 233 60 228 5.99e-103 319
Msa0106840 MtrunA17_Chr1g0181381 64.659 249 50 7 38 280 34 250 1.30e-102 318
Msa0106840 MtrunA17_Chr2g0330171 69.159 214 39 2 16 229 22 208 1.91e-102 317
Msa0106840 MtrunA17_Chr8g0373541 73.545 189 26 1 41 229 31 195 8.86e-101 314
Msa0106840 MtrunA17_Chr4g0040571 74.866 187 23 1 43 229 39 201 5.66e-100 311
Msa0106840 MtrunA17_Chr7g0268961 81.132 159 30 0 71 229 26 184 3.97e-99 309
Msa0106840 MtrunA17_Chr4g0029521 46.411 418 126 16 40 446 35 365 6.61e-99 308
Msa0106840 MtrunA17_Chr1g0185121 62.000 250 57 5 2 242 4 224 1.02e-96 301
Msa0106840 MtrunA17_Chr1g0191991 71.429 189 30 1 41 229 61 225 1.54e-96 303
Msa0106840 MtrunA17_Chr1g0151351 62.882 229 54 5 15 237 8 211 8.35e-93 291
Msa0106840 MtrunA17_Chr2g0326381 57.563 238 68 5 43 272 32 244 4.29e-91 285
Msa0106840 MtrunA17_Chr3g0141431 64.674 184 40 2 41 223 20 179 3.59e-85 270
Msa0106840 MtrunA17_Chr2g0324991 84.211 133 21 0 76 208 1 133 1.15e-83 256
Msa0106840 MtrunA17_Chr6g0479921 62.759 145 53 1 78 221 40 184 2.87e-65 219
Msa0106840 MtrunA17_Chr8g0375521 62.759 145 52 2 78 220 38 182 5.40e-64 215
Msa0106840 MtrunA17_Chr1g0200421 34.437 151 87 4 81 219 236 386 5.12e-23 102
Msa0106840 MtrunA17_Chr2g0320341 34.868 152 85 4 79 216 227 378 7.60e-22 97.8
Msa0106840 MtrunA17_Chr3g0123941 34.899 149 89 3 79 219 120 268 1.34e-21 96.3
Msa0106840 MtrunA17_Chr8g0352011 36.301 146 83 5 83 219 166 310 1.09e-19 90.5
Msa0106840 MtrunA17_Chr5g0422571 35.811 148 82 5 88 224 106 251 2.30e-19 89.0
Msa0106840 MtrunA17_Chr7g0258011 33.333 162 90 6 83 227 176 336 3.18e-19 89.4
Msa0106840 MtrunA17_Chr1g0198651 33.544 158 89 6 75 219 95 249 3.23e-19 88.2
Msa0106840 MtrunA17_Chr4g0053341 33.333 174 106 4 55 219 46 218 3.51e-19 87.0
Msa0106840 MtrunA17_Chr1g0173841 34.932 146 85 5 83 219 215 359 1.14e-18 88.2
Msa0106840 MtrunA17_Chr8g0382121 32.432 148 89 5 80 216 109 256 3.66e-18 85.5
Msa0106840 MtrunA17_Chr2g0328921 33.562 146 87 5 83 219 138 282 5.67e-18 85.1
Msa0106840 MtrunA17_Chr2g0321291 34.694 147 84 5 83 219 133 277 1.60e-17 83.6
Msa0106840 MtrunA17_Chr4g0026521 33.333 147 86 5 83 219 118 262 1.11e-16 80.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0106840 AT2G02080.1 46.123 503 168 12 41 512 52 482 1.07e-123 373
Msa0106840 AT2G02080.4 46.123 503 168 12 41 512 52 482 1.07e-123 373
Msa0106840 AT2G02080.5 46.123 503 168 12 41 512 52 482 1.07e-123 373
Msa0106840 AT2G02080.3 46.123 503 168 12 41 512 52 482 1.07e-123 373
Msa0106840 AT2G02070.2 45.047 535 194 13 42 517 51 544 3.61e-115 354
Msa0106840 AT2G02070.1 45.047 535 194 13 42 517 51 544 3.61e-115 354
Msa0106840 AT2G02080.6 46.035 454 164 10 91 512 1 405 1.70e-111 339
Msa0106840 AT2G02080.2 46.035 454 164 10 91 512 1 405 1.70e-111 339
Msa0106840 AT1G14580.1 44.250 513 185 13 2 509 20 436 6.94e-111 338
Msa0106840 AT1G14580.2 44.250 513 185 13 2 509 20 436 6.94e-111 338
Msa0106840 AT1G14580.3 44.250 513 185 13 2 509 34 450 1.50e-110 338
Msa0106840 AT3G50700.1 70.142 211 36 2 22 229 10 196 1.17e-102 317
Msa0106840 AT5G66730.1 71.429 203 31 2 31 230 17 195 2.25e-100 313
Msa0106840 AT1G55110.3 68.837 215 30 4 19 229 45 226 4.08e-98 305
Msa0106840 AT1G55110.1 68.837 215 30 4 19 229 45 226 4.08e-98 305
Msa0106840 AT1G55110.2 68.837 215 30 4 19 229 45 226 4.08e-98 305
Msa0106840 AT1G03840.1 72.396 192 27 2 38 229 38 203 5.78e-98 306
Msa0106840 AT3G13810.6 75.661 189 21 2 42 229 50 214 8.49e-98 306
Msa0106840 AT3G13810.4 75.661 189 21 2 42 229 69 233 1.18e-97 306
Msa0106840 AT3G13810.1 75.661 189 21 2 42 229 69 233 1.18e-97 306
Msa0106840 AT3G13810.5 75.661 189 21 2 42 229 64 228 1.21e-97 306
Msa0106840 AT1G03840.2 83.333 156 26 0 74 229 46 201 1.68e-97 305
Msa0106840 AT5G03150.1 69.668 211 33 4 43 250 53 235 2.40e-97 305
Msa0106840 AT3G13810.3 87.097 155 19 1 76 229 66 220 5.13e-97 304
Msa0106840 AT3G13810.2 87.097 155 19 1 76 229 80 234 6.16e-97 304
Msa0106840 AT3G45260.2 72.251 191 28 2 43 232 39 205 1.10e-95 299
Msa0106840 AT3G45260.1 72.251 191 28 2 43 232 39 205 1.10e-95 299
Msa0106840 AT5G44160.1 71.875 192 28 2 38 229 34 199 9.55e-95 297
Msa0106840 AT5G44160.2 80.120 166 31 1 76 239 7 172 2.44e-94 295
Msa0106840 AT4G02670.1 84.967 153 22 1 78 229 64 216 3.49e-94 293
Msa0106840 AT5G60470.1 78.528 163 34 1 77 238 45 207 3.69e-94 295
Msa0106840 AT4G02670.2 84.967 153 22 1 78 229 66 218 3.87e-94 293
Msa0106840 AT5G60470.2 66.029 209 45 3 32 239 34 217 8.46e-93 291
Msa0106840 AT5G60470.3 66.029 209 45 3 32 239 30 213 9.03e-93 291
Msa0106840 AT1G25250.1 63.014 146 51 2 78 220 21 166 1.44e-65 218
Msa0106840 AT1G25250.3 63.014 146 51 2 78 220 44 189 1.72e-65 218
Msa0106840 AT2G01940.1 63.946 147 51 2 78 222 55 201 2.02e-65 219
Msa0106840 AT1G68130.1 56.395 172 65 3 78 239 52 223 3.63e-65 218
Msa0106840 AT2G01940.3 62.838 148 52 3 78 222 55 202 7.04e-62 210
Msa0106840 AT1G68130.2 54.745 137 52 3 113 239 1 137 5.81e-45 162
Msa0106840 AT2G01940.2 64.286 112 38 2 113 222 1 112 9.68e-45 162
Msa0106840 AT1G25250.2 62.162 111 39 2 113 220 1 111 2.95e-44 159
Msa0106840 AT1G34370.3 33.333 153 88 3 81 219 19 171 9.34e-22 96.3
Msa0106840 AT1G34370.2 33.333 153 88 3 81 219 229 381 1.84e-21 98.2
Msa0106840 AT1G34370.1 33.333 153 88 3 81 219 229 381 1.84e-21 98.2
Msa0106840 AT5G22890.1 31.373 153 91 3 81 219 202 354 7.65e-21 95.1
Msa0106840 AT3G20880.1 31.737 167 98 6 83 234 243 408 5.39e-19 89.7
Msa0106840 AT1G51220.1 32.192 146 89 4 83 219 165 309 2.29e-18 87.0
Msa0106840 AT3G57670.1 34.247 146 86 5 83 219 204 348 4.52e-18 86.7
Msa0106840 AT1G13290.1 34.899 149 83 6 88 224 93 239 7.54e-18 84.7
Msa0106840 AT1G34790.1 35.333 150 85 6 80 219 129 276 1.89e-17 83.6
Msa0106840 AT1G08290.1 29.954 217 120 9 16 219 115 312 6.74e-17 82.8

Find 98 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGTGTTGATTCCAATTT+AGG 0.091214 1_3:+16585479 None:intergenic
CTCCATGTTGGGTGCTTATT+TGG 0.155318 1_3:+16586335 None:intergenic
CGAAGAAGTTGTGTTGTTAT+TGG 0.199081 1_3:+16586054 None:intergenic
ATTAAATGATGTTCATATTT+TGG 0.212431 1_3:+16586268 None:intergenic
TTTGTTGCCATTAGGGTCTT+TGG 0.213274 1_3:+16589648 None:intergenic
TCCATTGTTGATCTTCAAAA+AGG 0.237827 1_3:+16585449 None:intergenic
TTCATCATCTACACCTTTCT+TGG 0.248087 1_3:-16590268 Msa0106840:CDS
GGAAAGAAGCTTAGGTTAAA+AGG 0.253387 1_3:+16586022 None:intergenic
CACAAATAAACCTTTCTCTT+TGG 0.255380 1_3:+16589513 None:intergenic
GAACAACATGGATCCTAAAT+TGG 0.267054 1_3:-16585492 Msa0106840:CDS
AAATCTGTTTGTTGCCATTA+GGG 0.267384 1_3:+16589641 None:intergenic
GTGTTGTTACCATTGGTATT+AGG 0.279367 1_3:+16586001 None:intergenic
CAAATCTGTTTGTTGCCATT+AGG 0.293552 1_3:+16589640 None:intergenic
AGGTACTTGCATGGTGTTCC+AGG 0.328858 1_3:+16590135 None:intergenic
GCTTAATATGTTGTTGTTTG+TGG 0.341536 1_3:+16586312 None:intergenic
TCCATGTTGGGTGCTTATTT+GGG 0.344178 1_3:+16586336 None:intergenic
CTAGTTGGTAATTTGTGCTT+TGG 0.354162 1_3:-16585635 Msa0106840:CDS
GTATGTGAAGTGTGTCAAAA+AGG 0.363879 1_3:-16589618 Msa0106840:CDS
TCTTGTTGGAAAGTTTGATT+TGG 0.366501 1_3:+16586157 None:intergenic
TCCACAAACCACATGAGTTT+AGG 0.377863 1_3:-16586364 Msa0106840:CDS
GTTGGTAATTTGTGCTTTGG+AGG 0.397322 1_3:-16585632 Msa0106840:CDS
AGTGCTATCACCTCTGCATC+TGG 0.401274 1_3:+16589675 None:intergenic
TGGTGAACACATGTTGGTTC+TGG 0.406411 1_3:+16589489 None:intergenic
ATGCAACTTCCTGATCTTCA+AGG 0.407756 1_3:-16586082 Msa0106840:CDS
ATTCTAAGACTTGTGGTACT+AGG 0.408246 1_3:-16589338 Msa0106840:CDS
TTGGTATTTCCTTGAAGATC+AGG 0.421140 1_3:+16586073 None:intergenic
AAAAGTGGTTTGAAATTGAA+TGG 0.422881 1_3:-16589947 Msa0106840:CDS
GTGACAGTTTCATCACTCAT+AGG 0.424200 1_3:-16586462 Msa0106840:CDS
GTTGTTTGTGGCTCCATGTT+GGG 0.425393 1_3:+16586324 None:intergenic
AGGATCAGATAAATTGACTT+TGG 0.426316 1_3:-16585612 Msa0106840:CDS
AATATGCTGTTCAATCTGAT+TGG 0.427517 1_3:-16589368 Msa0106840:CDS
CATGGATTGATGAACTCTCT+TGG 0.436092 1_3:-16585752 Msa0106840:CDS
GTCCTTGATGAAGGTCTTGT+TGG 0.436312 1_3:+16586143 None:intergenic
ACCTAAACTCATGTGGTTTG+TGG 0.441992 1_3:+16586363 None:intergenic
TGGTATTAGGAAAGAAGCTT+AGG 0.442631 1_3:+16586014 None:intergenic
GTGTTCACCATGACCCTTCA+AGG 0.444680 1_3:-16589476 Msa0106840:CDS
CATGTTGTTCATTGCACTCA+TGG 0.444733 1_3:+16585505 None:intergenic
CATGACCCTTCAAGGGCTCT+TGG 0.457066 1_3:-16589468 Msa0106840:CDS
CCCTTCCAACATGAACCCTT+TGG 0.462526 1_3:-16586401 Msa0106840:CDS
ATGGATTGATGAACTCTCTT+GGG 0.462791 1_3:-16585751 Msa0106840:CDS
TCTTGTCTGATTTCCAAGAA+AGG 0.471370 1_3:+16590255 None:intergenic
AGGGCTCTTGGTGACCTCAC+TGG 0.481216 1_3:-16589456 Msa0106840:CDS
GCCAAAGGGTTCATGTTGGA+AGG 0.499818 1_3:+16586400 None:intergenic
ACTATCTCCAAAGACCCTAA+TGG 0.500143 1_3:-16589655 Msa0106840:CDS
GAAGAGGACACAATTTGCCT+TGG 0.500777 1_3:-16589563 Msa0106840:CDS
ATGCATTGTGTTGTTACCAT+TGG 0.504019 1_3:+16585994 None:intergenic
TTGAGAATTGTCCTTGATGA+AGG 0.510385 1_3:+16586134 None:intergenic
TAACAAAGAGCCAAAGAGAA+AGG 0.517289 1_3:-16589523 Msa0106840:CDS
TTGATGAACTCTCTTGGGAA+TGG 0.517690 1_3:-16585746 Msa0106840:CDS
GATGATGATGATTGATGTAA+AGG 0.518086 1_3:+16586241 None:intergenic
TGTTGTTTGTGGCTCCATGT+TGG 0.521308 1_3:+16586323 None:intergenic
TTCTAAGACTTGTGGTACTA+GGG 0.522062 1_3:-16589337 Msa0106840:CDS
AAAGTGGTTTGAAATTGAAT+GGG 0.536574 1_3:-16589946 Msa0106840:CDS
AAACAACTTCATCTTCATCA+TGG 0.542991 1_3:-16586109 Msa0106840:CDS
AATATGAGTAGTACAAGTGG+TGG 0.548357 1_3:-16585560 Msa0106840:CDS
ATGAGTAGTACAAGTGGTGG+AGG 0.553893 1_3:-16585557 Msa0106840:CDS
CATCATCATCATCAACATGA+AGG 0.559817 1_3:-16585941 Msa0106840:CDS
AGCTTCTTTCCTAATACCAA+TGG 0.563642 1_3:-16586010 Msa0106840:CDS
AGAAATATGAGTAGTACAAG+TGG 0.564697 1_3:-16585563 Msa0106840:CDS
TAACAACACAACTTCTTCGT+CGG 0.566297 1_3:-16586050 Msa0106840:CDS
TTCCAACAAGACCTTCATCA+AGG 0.568775 1_3:-16586145 Msa0106840:CDS
TGGTCAATTTCACAATGTTG+AGG 0.569576 1_3:-16585693 Msa0106840:CDS
TATATATAGATATACATAGA+GGG 0.571167 1_3:+16589913 None:intergenic
CAAGAGCCCTTGAAGGGTCA+TGG 0.571189 1_3:+16589469 None:intergenic
TTTGGATCAGTGATGAAGAA+AGG 0.573682 1_3:+16586175 None:intergenic
TCGTCGCAACAAAGTCTAGT+TGG 0.578172 1_3:-16585650 Msa0106840:CDS
ATATATGATAATAACAACCT+TGG 0.580950 1_3:-16585713 Msa0106840:CDS
ACTAGACTTTGTTGCGACGA+TGG 0.581371 1_3:+16585653 None:intergenic
CCAAAGGGTTCATGTTGGAA+GGG 0.582486 1_3:+16586401 None:intergenic
TGACAGTTTCATCACTCATA+GGG 0.582640 1_3:-16586461 Msa0106840:CDS
AAAATAGATGAGTTGCCAAA+GGG 0.582651 1_3:+16586386 None:intergenic
AGGTCACCAAGAGCCCTTGA+AGG 0.583044 1_3:+16589462 None:intergenic
TCAATTTCACAATGTTGAGG+AGG 0.590636 1_3:-16585690 Msa0106840:CDS
GAAAATAGATGAGTTGCCAA+AGG 0.595195 1_3:+16586385 None:intergenic
TCCCAAATAAGCACCCAACA+TGG 0.595857 1_3:-16586337 Msa0106840:CDS
GTGTACAAGGAATATTACCT+AGG 0.598064 1_3:+16586290 None:intergenic
GGGATAGACCTAAACTCATG+TGG 0.602066 1_3:+16586356 None:intergenic
AACAACAACATATTAAGCCT+AGG 0.605686 1_3:-16586307 Msa0106840:CDS
AATGCATAAAGGTACTTGCA+TGG 0.607082 1_3:+16590126 None:intergenic
GATCAACATCAACATCTACA+TGG 0.612377 1_3:-16585770 Msa0106840:CDS
AAAGCTCATTCTAAGACTTG+TGG 0.613886 1_3:-16589345 Msa0106840:CDS
AGTTGCCAAAGGGTTCATGT+TGG 0.620508 1_3:+16586396 None:intergenic
TGTTCACCATGACCCTTCAA+GGG 0.621698 1_3:-16589475 Msa0106840:CDS
CCTAAATTGGAATCAACACA+AGG 0.622024 1_3:-16585479 Msa0106840:CDS
GAAAACAGATCCAGATGCAG+AGG 0.622348 1_3:-16589685 Msa0106840:intron
CAACATTGTGAAATTGACCA+AGG 0.623196 1_3:+16585696 None:intergenic
ATCAGTGATGAAGAAAGGTG+AGG 0.628094 1_3:+16586180 None:intergenic
AATTTGCAACTACATAGAAG+AGG 0.631288 1_3:-16589579 Msa0106840:CDS
CATGAGTGCAATGAACAACA+TGG 0.631457 1_3:-16585504 Msa0106840:CDS
ACGACTATCAACAACAACAA+TGG 0.634863 1_3:-16585806 Msa0106840:CDS
AGCAGTTGATGAAGCATCTG+TGG 0.636040 1_3:+16590197 None:intergenic
ACTGTGGTACTCTCTTCTCA+AGG 0.636169 1_3:-16589302 Msa0106840:intron
GGTCACCAAGAGCCCTTGAA+GGG 0.641915 1_3:+16589463 None:intergenic
AATGCAGTAGCCGACATGTG+TGG 0.657456 1_3:+16585863 None:intergenic
GTTGTCTTCGCCACACATGT+CGG 0.684816 1_3:-16585873 Msa0106840:CDS
GGGTCATGGTGAACACATGT+TGG 0.698022 1_3:+16589483 None:intergenic
AGTGCTTCTTAATTCCAGTG+AGG 0.713073 1_3:+16589442 None:intergenic
AGGGAGTATAGATGTGACTG+TGG 0.716730 1_3:-16589318 Msa0106840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATTCAAGATTAATTTA+GGG + chr1_3:16585745-16585764 None:intergenic 10.0%
!! AAATAATTCAAGATTAATTT+AGG + chr1_3:16585746-16585765 None:intergenic 10.0%
!! TTATTTGCATATAAAAAAAT+TGG + chr1_3:16586481-16586500 None:intergenic 10.0%
!! TCATCAATATTATTAAAATT+TGG - chr1_3:16586785-16586804 Msa0106840:intron 10.0%
!! TATTTCATAAAAACAATTAT+GGG + chr1_3:16588171-16588190 None:intergenic 10.0%
!! ATATTTCATAAAAACAATTA+TGG + chr1_3:16588172-16588191 None:intergenic 10.0%
!!! TATACATTAAAATATTCTTT+TGG - chr1_3:16588332-16588351 Msa0106840:intron 10.0%
!!! TAATTCTAAGATAATTAATT+TGG + chr1_3:16588740-16588759 None:intergenic 10.0%
!! TTAATTAAATACTAATCAAA+AGG - chr1_3:16588797-16588816 Msa0106840:intron 10.0%
!! AAAAAAAAAAATATTGCATT+AGG + chr1_3:16589169-16589188 None:intergenic 10.0%
!!! ATCTTGAATTATTTTAGTAT+AGG - chr1_3:16585752-16585771 Msa0106840:CDS 15.0%
!!! TCTTGAATTATTTTAGTATA+GGG - chr1_3:16585753-16585772 Msa0106840:CDS 15.0%
!! TATATATAGATATACATAGA+GGG + chr1_3:16585832-16585851 None:intergenic 15.0%
!!! TTTTTTTTGTTTGTTTTGAA+TGG + chr1_3:16585975-16585994 None:intergenic 15.0%
!!! GTGTAACTTTTTAAATTTTT+TGG - chr1_3:16586004-16586023 Msa0106840:CDS 15.0%
!!! GATTAAAATTTGCTTAAAAT+AGG - chr1_3:16586566-16586585 Msa0106840:intron 15.0%
!!! CAATTTTAATATTAACGAAA+TGG + chr1_3:16586750-16586769 None:intergenic 15.0%
!! AAAATGAAAAATAACTAACA+AGG - chr1_3:16587134-16587153 Msa0106840:intron 15.0%
!!! TATTTTTCTATCTCTTATAA+TGG - chr1_3:16587711-16587730 Msa0106840:intron 15.0%
!! TTTAATATAATAACCATACA+CGG - chr1_3:16588246-16588265 Msa0106840:intron 15.0%
!! GTTTATCCAAAATATAATTT+GGG + chr1_3:16588552-16588571 None:intergenic 15.0%
!! AGTTTATCCAAAATATAATT+TGG + chr1_3:16588553-16588572 None:intergenic 15.0%
!!! AAGATAATTAATTTGGATAA+TGG + chr1_3:16588733-16588752 None:intergenic 15.0%
!! TTAAAATGTATATATTGACA+TGG - chr1_3:16588900-16588919 Msa0106840:intron 15.0%
!!! ATTAAATGATGTTCATATTT+TGG + chr1_3:16589477-16589496 None:intergenic 15.0%
!! AAATAATGAAGAATGCATAA+AGG + chr1_3:16585630-16585649 None:intergenic 20.0%
!! GTATATATAGATATACATAG+AGG + chr1_3:16585833-16585852 None:intergenic 20.0%
!!! TAAAATTTGCTTAAAATAGG+AGG - chr1_3:16586569-16586588 Msa0106840:intron 20.0%
!! TAAAAAAATAGATCAACCAT+AGG + chr1_3:16586706-16586725 None:intergenic 20.0%
!!! TAGATTGAACCAATTTTTTT+TGG + chr1_3:16586896-16586915 None:intergenic 20.0%
!!! TCTATTGATGCATTTTAATT+TGG - chr1_3:16586912-16586931 Msa0106840:intron 20.0%
!!! ACGAATGTAATTTAAAACTT+TGG + chr1_3:16586940-16586959 None:intergenic 20.0%
!! TTACTCATATTTACTATTCT+TGG + chr1_3:16587103-16587122 None:intergenic 20.0%
!! TCGTAAACAAAAGTTAAAAT+AGG - chr1_3:16587173-16587192 Msa0106840:intron 20.0%
!! CGTAAACAAAAGTTAAAATA+GGG - chr1_3:16587174-16587193 Msa0106840:intron 20.0%
!!! TTATTTTTTTTGTTGTGCTT+TGG - chr1_3:16587366-16587385 Msa0106840:intron 20.0%
!!! TATTTTTTTTGTTGTGCTTT+GGG - chr1_3:16587367-16587386 Msa0106840:intron 20.0%
!! GAAAAAATTCATCATAATGA+AGG + chr1_3:16587548-16587567 None:intergenic 20.0%
!!! TTTTTCTCTCTCAAATTTTA+CGG - chr1_3:16587673-16587692 Msa0106840:intron 20.0%
!! TTCACAAGAATTATATATGA+TGG - chr1_3:16587871-16587890 Msa0106840:intron 20.0%
!! AATAATCAAAACCACAAAAT+GGG + chr1_3:16587945-16587964 None:intergenic 20.0%
!! CATTAAACAATGAAAAAAGA+GGG + chr1_3:16588088-16588107 None:intergenic 20.0%
!!! AAAAAGTATGTAGAATTGTA+GGG + chr1_3:16588199-16588218 None:intergenic 20.0%
!! ATATTAAATGTCAAGTATGT+AGG + chr1_3:16588234-16588253 None:intergenic 20.0%
!! TTAATATAATAACCATACAC+GGG - chr1_3:16588247-16588266 Msa0106840:intron 20.0%
!! AAAAGTGAGATAAACAATTA+AGG + chr1_3:16588312-16588331 None:intergenic 20.0%
!! TCTCTCATTTCTAATAAATT+TGG + chr1_3:16588973-16588992 None:intergenic 20.0%
!! TAAGTATTTAAACAAAGAAG+AGG - chr1_3:16589069-16589088 Msa0106840:intron 20.0%
!! AAGTATTTAAACAAAGAAGA+GGG - chr1_3:16589070-16589089 Msa0106840:intron 20.0%
!! ATATATGATAATAACAACCT+TGG - chr1_3:16590029-16590048 Msa0106840:intron 20.0%
!!! TGATTTCTTCTTTTTTTCTG+AGG + chr1_3:16585586-16585605 None:intergenic 25.0%
! AAAAAAAGAAGAAATCAACC+TGG - chr1_3:16585589-16585608 Msa0106840:CDS 25.0%
! TCCAGAAATATTTCACAAAA+GGG + chr1_3:16585690-16585709 None:intergenic 25.0%
! ATCCAGAAATATTTCACAAA+AGG + chr1_3:16585691-16585710 None:intergenic 25.0%
!! CACTTTTCATTAGAAAAACT+TGG + chr1_3:16585782-16585801 None:intergenic 25.0%
!! CAAGTTTTTCTAATGAAAAG+TGG - chr1_3:16585780-16585799 Msa0106840:CDS 25.0%
!! AAAAGTGGTTTGAAATTGAA+TGG - chr1_3:16585795-16585814 Msa0106840:CDS 25.0%
!! AAAGTGGTTTGAAATTGAAT+GGG - chr1_3:16585796-16585815 Msa0106840:CDS 25.0%
! ATGTTAATACACATTACCTA+TGG - chr1_3:16586687-16586706 Msa0106840:intron 25.0%
! AACAAAACAAAAAGCTTCAA+TGG + chr1_3:16587205-16587224 None:intergenic 25.0%
! GGATGCAATTATATGTATTA+TGG + chr1_3:16587596-16587615 None:intergenic 25.0%
! CATCATACAATAGATTATAG+AGG + chr1_3:16587617-16587636 None:intergenic 25.0%
! AATTATCTCGCATAACTTAA+TGG + chr1_3:16587654-16587673 None:intergenic 25.0%
!! ATGTTTTCTCAAAGATTTTC+CGG - chr1_3:16587816-16587835 Msa0106840:intron 25.0%
! ATACGATCGTACTATTAAAA+AGG + chr1_3:16587852-16587871 None:intergenic 25.0%
! TTATATATGATGGTAAGAAG+TGG - chr1_3:16587881-16587900 Msa0106840:intron 25.0%
! ATAATCAAAACCACAAAATG+GGG + chr1_3:16587944-16587963 None:intergenic 25.0%
! CAATAATCAAAACCACAAAA+TGG + chr1_3:16587946-16587965 None:intergenic 25.0%
!!! CATTTTGTGGTTTTGATTAT+TGG - chr1_3:16587944-16587963 Msa0106840:intron 25.0%
! GCATTAAACAATGAAAAAAG+AGG + chr1_3:16588089-16588108 None:intergenic 25.0%
!! GAAAAAGTATGTAGAATTGT+AGG + chr1_3:16588200-16588219 None:intergenic 25.0%
!!! AATTCTACATACTTTTTCTG+AGG - chr1_3:16588202-16588221 Msa0106840:intron 25.0%
!!! GAAAGATAGACTTTTAAGTA+AGG + chr1_3:16588621-16588640 None:intergenic 25.0%
! AATACTAATCAAAAGGTTCA+AGG - chr1_3:16588804-16588823 Msa0106840:intron 25.0%
!!! TTAGAGTTTGATTTTTTACC+GGG + chr1_3:16589047-16589066 None:intergenic 25.0%
!!! GTTAGAGTTTGATTTTTTAC+CGG + chr1_3:16589048-16589067 None:intergenic 25.0%
!! AATTCGAATGTATTTGTTAG+AGG + chr1_3:16589141-16589160 None:intergenic 25.0%
!!! TGGAAATAACAAGTTTGTTA+TGG + chr1_3:16589240-16589259 None:intergenic 25.0%
!!! AAATTGACTTTGGATTTTCT+TGG - chr1_3:16590140-16590159 Msa0106840:intron 25.0%
!!! CTTTTTTTCTGAGGAACTAA+AGG + chr1_3:16585577-16585596 None:intergenic 30.0%
! ACCCTTTTGTGAAATATTTC+TGG - chr1_3:16585686-16585705 Msa0106840:CDS 30.0%
!!! TTTGTTTGTTTTGAATGGCA+TGG + chr1_3:16585970-16585989 None:intergenic 30.0%
! AAATCTGTTTGTTGCCATTA+GGG + chr1_3:16586104-16586123 None:intergenic 30.0%
TATGTGAAGTGTGTCAAAAA+GGG - chr1_3:16586125-16586144 Msa0106840:CDS 30.0%
AATTTGCAACTACATAGAAG+AGG - chr1_3:16586163-16586182 Msa0106840:CDS 30.0%
CACAAATAAACCTTTCTCTT+TGG + chr1_3:16586232-16586251 None:intergenic 30.0%
AATATGCTGTTCAATCTGAT+TGG - chr1_3:16586374-16586393 Msa0106840:CDS 30.0%
TGCAAAACCAGTTTCAATTA+TGG + chr1_3:16586597-16586616 None:intergenic 30.0%
!! ACAAAAGAGTATCAACTAGA+GGG + chr1_3:16586628-16586647 None:intergenic 30.0%
!! TACAAAAGAGTATCAACTAG+AGG + chr1_3:16586629-16586648 None:intergenic 30.0%
!!! GAACCAATTTTTTTTGGTGT+TGG + chr1_3:16586890-16586909 None:intergenic 30.0%
AACAAGGTTGTTGAAGAAAA+TGG - chr1_3:16587150-16587169 Msa0106840:intron 30.0%
!! TTGTTTTGTTAGTTTATGCG+TGG - chr1_3:16587215-16587234 Msa0106840:intron 30.0%
!! TGTTTTGTTAGTTTATGCGT+GGG - chr1_3:16587216-16587235 Msa0106840:intron 30.0%
AATGGGAATAAGCATAAAAG+TGG + chr1_3:16587400-16587419 None:intergenic 30.0%
TCGTTTAACAACATGTGAAT+GGG + chr1_3:16587417-16587436 None:intergenic 30.0%
!!! GGTTTTGTTTTCTTTTGTCT+TGG - chr1_3:16587482-16587501 Msa0106840:intron 30.0%
! TCAAATTTTACGGTCAACTA+GGG - chr1_3:16587683-16587702 Msa0106840:intron 30.0%
CTATCTCTTATAATGGTCAA+TGG - chr1_3:16587718-16587737 Msa0106840:intron 30.0%
! TGTTTTCTCAAAGATTTTCC+GGG - chr1_3:16587817-16587836 Msa0106840:intron 30.0%
!! TTAAAAAGGTGCTATATTCC+CGG + chr1_3:16587838-16587857 None:intergenic 30.0%
ATTAATGCAAACTGTCTCAT+GGG + chr1_3:16587912-16587931 None:intergenic 30.0%
AATTAATGCAAACTGTCTCA+TGG + chr1_3:16587913-16587932 None:intergenic 30.0%
AGACAGTTTGCATTAATTGA+GGG - chr1_3:16587915-16587934 Msa0106840:intron 30.0%
GCAATATGCTTCATCTAATT+GGG + chr1_3:16588455-16588474 None:intergenic 30.0%
TGCAATATGCTTCATCTAAT+TGG + chr1_3:16588456-16588475 None:intergenic 30.0%
! AAGAGAGTATATTGCATGTA+AGG - chr1_3:16588487-16588506 Msa0106840:intron 30.0%
! AGAGAGTATATTGCATGTAA+GGG - chr1_3:16588488-16588507 Msa0106840:intron 30.0%
ATAGTGTAATAAGTCGATCA+TGG - chr1_3:16588518-16588537 Msa0106840:intron 30.0%
! AGGTCACCCAAATTATATTT+TGG - chr1_3:16588543-16588562 Msa0106840:intron 30.0%
! CTAATAAGGAGTGTGAAAAA+TGG + chr1_3:16588588-16588607 None:intergenic 30.0%
AAGGTGGTGTAATACTAATA+AGG + chr1_3:16588602-16588621 None:intergenic 30.0%
!! AGATAGACTTTTAAGTAAGG+TGG + chr1_3:16588618-16588637 None:intergenic 30.0%
AAGGAGATAAAATATGTCCT+AGG + chr1_3:16588663-16588682 None:intergenic 30.0%
TCTAAAGGGAAGAAAGAAAA+AGG + chr1_3:16588682-16588701 None:intergenic 30.0%
! TTTTTCTTTCTTCCCTTTAG+AGG - chr1_3:16588681-16588700 Msa0106840:intron 30.0%
TGAGTGAATAAACCTCTAAA+GGG + chr1_3:16588696-16588715 None:intergenic 30.0%
TTGAGTGAATAAACCTCTAA+AGG + chr1_3:16588697-16588716 None:intergenic 30.0%
TTTAGAGGTTTATTCACTCA+AGG - chr1_3:16588696-16588715 Msa0106840:intron 30.0%
! ATTATTTCTCATGCAGACAA+TGG - chr1_3:16588756-16588775 Msa0106840:intron 30.0%
ATGTGTGTTTGCATTATGAA+TGG + chr1_3:16589104-16589123 None:intergenic 30.0%
ATTCATAATGCAAACACACA+TGG - chr1_3:16589103-16589122 Msa0106840:intron 30.0%
! TCCAATGTTATGATTTTTGC+AGG - chr1_3:16589256-16589275 Msa0106840:intron 30.0%
AAAATAGATGAGTTGCCAAA+GGG + chr1_3:16589359-16589378 None:intergenic 30.0%
!! GCTTAATATGTTGTTGTTTG+TGG + chr1_3:16589433-16589452 None:intergenic 30.0%
AACAACAACATATTAAGCCT+AGG - chr1_3:16589435-16589454 Msa0106840:CDS 30.0%
!!! TGTTCATATTTTGGTGTACA+AGG + chr1_3:16589468-16589487 None:intergenic 30.0%
! GATGATGATGATTGATGTAA+AGG + chr1_3:16589504-16589523 None:intergenic 30.0%
CAATCATCATCATCATCATT+TGG - chr1_3:16589510-16589529 Msa0106840:CDS 30.0%
TCTTGTTGGAAAGTTTGATT+TGG + chr1_3:16589588-16589607 None:intergenic 30.0%
AAACAACTTCATCTTCATCA+TGG - chr1_3:16589633-16589652 Msa0106840:CDS 30.0%
! AGGATCAGATAAATTGACTT+TGG - chr1_3:16590130-16590149 Msa0106840:intron 30.0%
AGAAATATGAGTAGTACAAG+TGG - chr1_3:16590179-16590198 Msa0106840:CDS 30.0%
TTCATCATCTACACCTTTCT+TGG - chr1_3:16585474-16585493 Msa0106840:CDS 35.0%
TCTTGTCTGATTTCCAAGAA+AGG + chr1_3:16585490-16585509 None:intergenic 35.0%
!! AATGCATAAAGGTACTTGCA+TGG + chr1_3:16585619-16585638 None:intergenic 35.0%
! CAAATCTGTTTGTTGCCATT+AGG + chr1_3:16586105-16586124 None:intergenic 35.0%
GTATGTGAAGTGTGTCAAAA+AGG - chr1_3:16586124-16586143 Msa0106840:CDS 35.0%
TGTGTCAAAAAGGGTTTCAA+AGG - chr1_3:16586134-16586153 Msa0106840:CDS 35.0%
GTGTCAAAAAGGGTTTCAAA+GGG - chr1_3:16586135-16586154 Msa0106840:CDS 35.0%
TAACAAAGAGCCAAAGAGAA+AGG - chr1_3:16586219-16586238 Msa0106840:CDS 35.0%
!! AAGCACTTTTCTAGAAAGCA+TGG - chr1_3:16586316-16586335 Msa0106840:CDS 35.0%
!! AAAGCTCATTCTAAGACTTG+TGG - chr1_3:16586397-16586416 Msa0106840:CDS 35.0%
!! ATTCTAAGACTTGTGGTACT+AGG - chr1_3:16586404-16586423 Msa0106840:CDS 35.0%
!! TTCTAAGACTTGTGGTACTA+GGG - chr1_3:16586405-16586424 Msa0106840:CDS 35.0%
GACAATGCATAGAATATGCA+AGG - chr1_3:16586845-16586864 Msa0106840:intron 35.0%
!!! AATTTTTTTTGGTGTTGGCC+GGG + chr1_3:16586885-16586904 None:intergenic 35.0%
!!! CAATTTTTTTTGGTGTTGGC+CGG + chr1_3:16586886-16586905 None:intergenic 35.0%
TGTGTGTGTTACAATCTTCA+TGG + chr1_3:16587053-16587072 None:intergenic 35.0%
AATCCATAAGAAACTAGGTG+AGG + chr1_3:16587080-16587099 None:intergenic 35.0%
CTTGGAATCCATAAGAAACT+AGG + chr1_3:16587085-16587104 None:intergenic 35.0%
ACGTGAGTACACTGTATAAA+TGG - chr1_3:16587283-16587302 Msa0106840:intron 35.0%
CGTGAGTACACTGTATAAAT+GGG - chr1_3:16587284-16587303 Msa0106840:intron 35.0%
GTGAGTACACTGTATAAATG+GGG - chr1_3:16587285-16587304 Msa0106840:intron 35.0%
CTCGTTTAACAACATGTGAA+TGG + chr1_3:16587418-16587437 None:intergenic 35.0%
AATCTATTGTATGATGCAGC+TGG - chr1_3:16587621-16587640 Msa0106840:intron 35.0%
! CTCAAATTTTACGGTCAACT+AGG - chr1_3:16587682-16587701 Msa0106840:intron 35.0%
GAGACAGTTTGCATTAATTG+AGG - chr1_3:16587914-16587933 Msa0106840:intron 35.0%
!! TGGTGGTGTGTATAAGATTT+TGG - chr1_3:16588048-16588067 Msa0106840:intron 35.0%
!! AAGATTTTGGCATAATCCCA+TGG - chr1_3:16588061-16588080 Msa0106840:intron 35.0%
!! AGATTTTGGCATAATCCCAT+GGG - chr1_3:16588062-16588081 Msa0106840:intron 35.0%
ATCTATACTTTACCCGTGTA+TGG + chr1_3:16588262-16588281 None:intergenic 35.0%
TCTTTATGTAGTCACTAGCT+AGG - chr1_3:16588371-16588390 Msa0106840:intron 35.0%
TCACTAGCTAGGTTCTTATT+TGG - chr1_3:16588382-16588401 Msa0106840:intron 35.0%
GTAATAAGTCGATCATGGTA+AGG - chr1_3:16588523-16588542 Msa0106840:intron 35.0%
AAAATATGTCCTAGGTGTGA+TGG + chr1_3:16588655-16588674 None:intergenic 35.0%
ACCCTATACTAATGTCTGAA+CGG - chr1_3:16588925-16588944 Msa0106840:intron 35.0%
ACCGTTCAGACATTAGTATA+GGG + chr1_3:16588929-16588948 None:intergenic 35.0%
TACCGTTCAGACATTAGTAT+AGG + chr1_3:16588930-16588949 None:intergenic 35.0%
GCCTGCAAAAATCATAACAT+TGG + chr1_3:16589260-16589279 None:intergenic 35.0%
TGACAGTTTCATCACTCATA+GGG - chr1_3:16589281-16589300 Msa0106840:intron 35.0%
GAAAATAGATGAGTTGCCAA+AGG + chr1_3:16589360-16589379 None:intergenic 35.0%
GTGTACAAGGAATATTACCT+AGG + chr1_3:16589455-16589474 None:intergenic 35.0%
TTTGGATCAGTGATGAAGAA+AGG + chr1_3:16589570-16589589 None:intergenic 35.0%
TTGAGAATTGTCCTTGATGA+AGG + chr1_3:16589611-16589630 None:intergenic 35.0%
TTGGTATTTCCTTGAAGATC+AGG + chr1_3:16589672-16589691 None:intergenic 35.0%
! CGAAGAAGTTGTGTTGTTAT+TGG + chr1_3:16589691-16589710 None:intergenic 35.0%
TAACAACACAACTTCTTCGT+CGG - chr1_3:16589692-16589711 Msa0106840:intron 35.0%
GGAAAGAAGCTTAGGTTAAA+AGG + chr1_3:16589723-16589742 None:intergenic 35.0%
TGGTATTAGGAAAGAAGCTT+AGG + chr1_3:16589731-16589750 None:intergenic 35.0%
AGCTTCTTTCCTAATACCAA+TGG - chr1_3:16589732-16589751 Msa0106840:intron 35.0%
! GTGTTGTTACCATTGGTATT+AGG + chr1_3:16589744-16589763 None:intergenic 35.0%
! ATGCATTGTGTTGTTACCAT+TGG + chr1_3:16589751-16589770 None:intergenic 35.0%
CATCATCATCATCAACATGA+AGG - chr1_3:16589801-16589820 Msa0106840:intron 35.0%
! GAAGGTTTTTCTTCACTCTT+TGG - chr1_3:16589819-16589838 Msa0106840:intron 35.0%
CTTCAAAAAGCTGCTCAAAT+TGG - chr1_3:16589903-16589922 Msa0106840:intron 35.0%
ACGACTATCAACAACAACAA+TGG - chr1_3:16589936-16589955 Msa0106840:CDS 35.0%
GATCAACATCAACATCTACA+TGG - chr1_3:16589972-16589991 Msa0106840:CDS 35.0%
! ATGGATTGATGAACTCTCTT+GGG - chr1_3:16589991-16590010 Msa0106840:intron 35.0%
CAACATTGTGAAATTGACCA+AGG + chr1_3:16590049-16590068 None:intergenic 35.0%
TGGTCAATTTCACAATGTTG+AGG - chr1_3:16590049-16590068 Msa0106840:intron 35.0%
TCAATTTCACAATGTTGAGG+AGG - chr1_3:16590052-16590071 Msa0106840:intron 35.0%
!! CTAGTTGGTAATTTGTGCTT+TGG - chr1_3:16590107-16590126 Msa0106840:intron 35.0%
!! ACTTTGGATTTTCTTGGTGT+TGG - chr1_3:16590146-16590165 Msa0106840:CDS 35.0%
AATATGAGTAGTACAAGTGG+TGG - chr1_3:16590182-16590201 Msa0106840:CDS 35.0%
GAACAACATGGATCCTAAAT+TGG - chr1_3:16590250-16590269 Msa0106840:CDS 35.0%
!! CCTTGTGTTGATTCCAATTT+AGG + chr1_3:16590266-16590285 None:intergenic 35.0%
CCTAAATTGGAATCAACACA+AGG - chr1_3:16590263-16590282 Msa0106840:CDS 35.0%
ACTATCTCCAAAGACCCTAA+TGG - chr1_3:16586087-16586106 Msa0106840:CDS 40.0%
TTTGTTGCCATTAGGGTCTT+TGG + chr1_3:16586097-16586116 None:intergenic 40.0%
!! CTCTTTTGCTTTAGCTTCCA+AGG + chr1_3:16586199-16586218 None:intergenic 40.0%
AGTGCTTCTTAATTCCAGTG+AGG + chr1_3:16586303-16586322 None:intergenic 40.0%
! GAAAGCATGGTGAGAAAAAG+TGG - chr1_3:16586329-16586348 Msa0106840:CDS 40.0%
CTCAGTAGTGAATGACAATG+TGG + chr1_3:16586511-16586530 None:intergenic 40.0%
GGAGGATCCATAATTGAAAC+TGG - chr1_3:16586587-16586606 Msa0106840:intron 40.0%
TGCATAGAATATGCAAGGTC+CGG - chr1_3:16586850-16586869 Msa0106840:intron 40.0%
CGGCCAACACCAAAAAAAAT+TGG - chr1_3:16586884-16586903 Msa0106840:intron 40.0%
TGTCCTCACCTAGTTTCTTA+TGG - chr1_3:16587074-16587093 Msa0106840:intron 40.0%
!! AGTTTATGCGTGGGTTTTAG+TGG - chr1_3:16587225-16587244 Msa0106840:intron 40.0%
! TCACATGAGTTGAACTTGCT+TGG - chr1_3:16587461-16587480 Msa0106840:intron 40.0%
CAGTTTGCATTAATTGAGGG+TGG - chr1_3:16587918-16587937 Msa0106840:intron 40.0%
TGCTTTCAGTGATCAAAGAG+AGG - chr1_3:16587995-16588014 Msa0106840:intron 40.0%
ATCAAAGAGAGGACTCAAAG+TGG - chr1_3:16588006-16588025 Msa0106840:intron 40.0%
CTCAAAGTGGTAGTTCGATA+AGG - chr1_3:16588019-16588038 Msa0106840:intron 40.0%
GTAGTTCGATAAGGAGTTGT+TGG - chr1_3:16588028-16588047 Msa0106840:intron 40.0%
AATGAAAAAAGAGGGCCCAT+GGG + chr1_3:16588080-16588099 None:intergenic 40.0%
TTCATTTGTCCATCACACCT+AGG - chr1_3:16588643-16588662 Msa0106840:intron 40.0%
! TCTCATGCAGACAATGGTTT+TGG - chr1_3:16588762-16588781 Msa0106840:intron 40.0%
! AGAGTACTTAACCCACAACT+CGG - chr1_3:16589000-16589019 Msa0106840:intron 40.0%
TTGTACTTATCCCGAGTTGT+GGG + chr1_3:16589014-16589033 None:intergenic 40.0%
ACAACTCGGGATAAGTACAA+GGG - chr1_3:16589014-16589033 Msa0106840:intron 40.0%
GTGACAGTTTCATCACTCAT+AGG - chr1_3:16589280-16589299 Msa0106840:intron 40.0%
TCCACAAACCACATGAGTTT+AGG - chr1_3:16589378-16589397 Msa0106840:CDS 40.0%
ACCTAAACTCATGTGGTTTG+TGG + chr1_3:16589382-16589401 None:intergenic 40.0%
TCCATGTTGGGTGCTTATTT+GGG + chr1_3:16589409-16589428 None:intergenic 40.0%
ATCAGTGATGAAGAAAGGTG+AGG + chr1_3:16589565-16589584 None:intergenic 40.0%
TTCCAACAAGACCTTCATCA+AGG - chr1_3:16589597-16589616 Msa0106840:CDS 40.0%
ATGCAACTTCCTGATCTTCA+AGG - chr1_3:16589660-16589679 Msa0106840:CDS 40.0%
! CATGGATTGATGAACTCTCT+TGG - chr1_3:16589990-16590009 Msa0106840:intron 40.0%
TTGATGAACTCTCTTGGGAA+TGG - chr1_3:16589996-16590015 Msa0106840:intron 40.0%
!! GTTGGTAATTTGTGCTTTGG+AGG - chr1_3:16590110-16590129 Msa0106840:intron 40.0%
!!! TTGGATTTTCTTGGTGTTGG+AGG - chr1_3:16590149-16590168 Msa0106840:CDS 40.0%
!!! TTTTCTTGGTGTTGGAGGAA+TGG - chr1_3:16590154-16590173 Msa0106840:CDS 40.0%
CATGTTGTTCATTGCACTCA+TGG + chr1_3:16590240-16590259 None:intergenic 40.0%
CATGAGTGCAATGAACAACA+TGG - chr1_3:16590238-16590257 Msa0106840:CDS 40.0%
!! AGCAGTTGATGAAGCATCTG+TGG + chr1_3:16585548-16585567 None:intergenic 45.0%
GAAAACAGATCCAGATGCAG+AGG - chr1_3:16586057-16586076 Msa0106840:CDS 45.0%
GAAGAGGACACAATTTGCCT+TGG - chr1_3:16586179-16586198 Msa0106840:CDS 45.0%
!! TGGTGAACACATGTTGGTTC+TGG + chr1_3:16586256-16586275 None:intergenic 45.0%
TGTTCACCATGACCCTTCAA+GGG - chr1_3:16586267-16586286 Msa0106840:CDS 45.0%
! AGGGAGTATAGATGTGACTG+TGG - chr1_3:16586424-16586443 Msa0106840:CDS 45.0%
ACTGTGGTACTCTCTTCTCA+AGG - chr1_3:16586440-16586459 Msa0106840:CDS 45.0%
GCATAGAATATGCAAGGTCC+GGG - chr1_3:16586851-16586870 Msa0106840:intron 45.0%
CATAGAATATGCAAGGTCCG+GGG - chr1_3:16586852-16586871 Msa0106840:intron 45.0%
!! TTATGCGTGGGTTTTAGTGG+AGG - chr1_3:16587228-16587247 Msa0106840:intron 45.0%
!! GTGGGTTTTAGTGGAGGATA+TGG - chr1_3:16587234-16587253 Msa0106840:intron 45.0%
AGGATATGGCAGTGTGAATG+TGG - chr1_3:16587248-16587267 Msa0106840:intron 45.0%
GTTCGATAAGGAGTTGTTGG+TGG - chr1_3:16588031-16588050 Msa0106840:intron 45.0%
CAATGAAAAAAGAGGGCCCA+TGG + chr1_3:16588081-16588100 None:intergenic 45.0%
GAGTACTTAACCCACAACTC+GGG - chr1_3:16589001-16589020 Msa0106840:intron 45.0%
CTTGTACTTATCCCGAGTTG+TGG + chr1_3:16589015-16589034 None:intergenic 45.0%
CACAACTCGGGATAAGTACA+AGG - chr1_3:16589013-16589032 Msa0106840:intron 45.0%
CAACTCGGGATAAGTACAAG+GGG - chr1_3:16589015-16589034 Msa0106840:intron 45.0%
CCAAAGGGTTCATGTTGGAA+GGG + chr1_3:16589344-16589363 None:intergenic 45.0%
AGTTGCCAAAGGGTTCATGT+TGG + chr1_3:16589349-16589368 None:intergenic 45.0%
GGGATAGACCTAAACTCATG+TGG + chr1_3:16589389-16589408 None:intergenic 45.0%
TCCCAAATAAGCACCCAACA+TGG - chr1_3:16589405-16589424 Msa0106840:CDS 45.0%
CTCCATGTTGGGTGCTTATT+TGG + chr1_3:16589410-16589429 None:intergenic 45.0%
GTTGTTTGTGGCTCCATGTT+GGG + chr1_3:16589421-16589440 None:intergenic 45.0%
! TGTTGTTTGTGGCTCCATGT+TGG + chr1_3:16589422-16589441 None:intergenic 45.0%
! GTCCTTGATGAAGGTCTTGT+TGG + chr1_3:16589602-16589621 None:intergenic 45.0%
ACTAGACTTTGTTGCGACGA+TGG + chr1_3:16590092-16590111 None:intergenic 45.0%
TCGTCGCAACAAAGTCTAGT+TGG - chr1_3:16590092-16590111 Msa0106840:intron 45.0%
ATGAGTAGTACAAGTGGTGG+AGG - chr1_3:16590185-16590204 Msa0106840:CDS 45.0%
!!! TAAATTATGTTTTAATTTTT+AGG + chr1_3:16588837-16588856 None:intergenic 5.0%
AGGTACTTGCATGGTGTTCC+AGG + chr1_3:16585610-16585629 None:intergenic 50.0%
AGTGCTATCACCTCTGCATC+TGG + chr1_3:16586070-16586089 None:intergenic 50.0%
GGGTCATGGTGAACACATGT+TGG + chr1_3:16586262-16586281 None:intergenic 50.0%
GTGTTCACCATGACCCTTCA+AGG - chr1_3:16586266-16586285 Msa0106840:CDS 50.0%
CCAACTGAGCTAAGCTCACA+AGG + chr1_3:16586821-16586840 None:intergenic 50.0%
CCTTGTGAGCTTAGCTCAGT+TGG - chr1_3:16586818-16586837 Msa0106840:intron 50.0%
!! AAGTACAAGGGGTACTTGCC+CGG - chr1_3:16589026-16589045 Msa0106840:intron 50.0%
CCCTTCCAACATGAACCCTT+TGG - chr1_3:16589341-16589360 Msa0106840:CDS 50.0%
GCCAAAGGGTTCATGTTGGA+AGG + chr1_3:16589345-16589364 None:intergenic 50.0%
GTTGTCTTCGCCACACATGT+CGG - chr1_3:16589869-16589888 Msa0106840:intron 50.0%
AATGCAGTAGCCGACATGTG+TGG + chr1_3:16589882-16589901 None:intergenic 50.0%
CAAGAGCCCTTGAAGGGTCA+TGG + chr1_3:16586276-16586295 None:intergenic 55.0%
CATGACCCTTCAAGGGCTCT+TGG - chr1_3:16586274-16586293 Msa0106840:CDS 55.0%
GGTCACCAAGAGCCCTTGAA+GGG + chr1_3:16586282-16586301 None:intergenic 55.0%
AGGTCACCAAGAGCCCTTGA+AGG + chr1_3:16586283-16586302 None:intergenic 55.0%
! TTGAGGGTGGCCCCATTTTG+TGG - chr1_3:16587931-16587950 Msa0106840:intron 55.0%
! AGGGCTCTTGGTGACCTCAC+TGG - chr1_3:16586286-16586305 Msa0106840:CDS 60.0%
AAGGTCCGGGGTTCGAATCC+CGG - chr1_3:16586864-16586883 Msa0106840:intron 60.0%
GTTGGCCGGGATTCGAACCC+CGG + chr1_3:16586872-16586891 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 16585463 16590301 16585463 ID=Msa0106840;Name=Msa0106840
chr1_3 mRNA 16585463 16590301 16585463 ID=Msa0106840-mRNA-1;Parent=Msa0106840;Name=Msa0106840-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|0.75|1|1|4|0|549
chr1_3 exon 16590141 16590301 16590141 ID=Msa0106840-mRNA-1:exon:6264;Parent=Msa0106840-mRNA-1
chr1_3 exon 16589928 16589995 16589928 ID=Msa0106840-mRNA-1:exon:6263;Parent=Msa0106840-mRNA-1
chr1_3 exon 16589303 16589699 16589303 ID=Msa0106840-mRNA-1:exon:6262;Parent=Msa0106840-mRNA-1
chr1_3 exon 16585463 16586486 16585463 ID=Msa0106840-mRNA-1:exon:6261;Parent=Msa0106840-mRNA-1
chr1_3 CDS 16590141 16590301 16590141 ID=Msa0106840-mRNA-1:cds;Parent=Msa0106840-mRNA-1
chr1_3 CDS 16589928 16589995 16589928 ID=Msa0106840-mRNA-1:cds;Parent=Msa0106840-mRNA-1
chr1_3 CDS 16589303 16589699 16589303 ID=Msa0106840-mRNA-1:cds;Parent=Msa0106840-mRNA-1
chr1_3 CDS 16585463 16586486 16585463 ID=Msa0106840-mRNA-1:cds;Parent=Msa0106840-mRNA-1
Gene Sequence

>Msa0106840

ATGGCTGCTGCTTCATCATCTACACCTTTCTTGGAAATCAGACAAGAAAATCAAAGTCAGATTACACAACAACATCAATCTTCCACAGATGCTTCATCAACTGCTGCTCAACCTTTAGTTCCTCAGAAAAAAAGAAGAAATCAACCTGGAACACCATGCAATATAGGGTTACCAAGTTTTTCTAATGAAAAGTGGTTTGAAATTGAATGGGAAATCTTCTTCCCTCTATATCCAGATGCAGAGGTGATAGCACTATCTCCAAAGACCCTAATGGCAACAAACAGATTTGTATGTGAAGTGTGTCAAAAAGGGTTTCAAAGGGAGCAAAATTTGCAACTACATAGAAGAGGACACAATTTGCCTTGGAAGCTAAAGCAAAAGAGTAACAAAGAGCCAAAGAGAAAGGTTTATTTGTGTCCAGAACCAACATGTGTTCACCATGACCCTTCAAGGGCTCTTGGTGACCTCACTGGAATTAAGAAGCACTTTTCTAGAAAGCATGGTGAGAAAAAGTGGAAATGTGAAAAGTGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCTAAGACTTGTGGTACTAGGGAGTATAGATGTGACTGTGGTACTCTCTTCTCAAGGCGTGACAGTTTCATCACTCATAGGGCATTTTGTGATGCACTAGCACATGAAAATGCAAGACACCCTTCCAACATGAACCCTTTGGCAACTCATCTATTTTCCACAAACCACATGAGTTTAGGTCTATCCCAAATAAGCACCCAACATGGAGCCACAAACAACAACATATTAAGCCTAGGTAATATTCCTTGTACACCAAAATATGAACATCATTTAATCTCACCTTTACATCAATCATCATCATCATCATTTGGTCAACAACAACAACAACAATCAATGTCTTCCTCACCTTTCTTCATCACTGATCCAAATCAAACTTTCCAACAAGACCTTCATCAAGGACAATTCTCAAACAAACAACTTCATCTTCATCATGGTCTCATGCAACTTCCTGATCTTCAAGGAAATACCAATAACAACACAACTTCTTCGTCGGTATCGCCTTTTAACCTAAGCTTCTTTCCTAATACCAATGGTAACAACACAATGCATGATCAATTCAACAACATAAGTGAATCTCATCATCATCATCATCAACATGAAGGTTTTTCTTCACTCTTTGGTAATTCATCATTGCAACAAGAGAACATGTTGTCTTCGCCACACATGTCGGCTACTGCATTGCTTCAAAAAGCTGCTCAAATTGGTTCAACAACAACGACTATCAACAACAACAATGGTGTAGAATCTGATGATCAACATCAACATCTACATGGATTGATGAACTCTCTTGGGAATGGAAACACTTCAATATATGATAATAACAACCTTGGTCAATTTCACAATGTTGAGGAGGAGAATAAAAAGATGCCATCGTCGCAACAAAGTCTAGTTGGTAATTTGTGCTTTGGAGGATCAGATAAATTGACTTTGGATTTTCTTGGTGTTGGAGGAATGGTGAGAAATATGAGTAGTACAAGTGGTGGAGGATTTTCACAAAGAGAGCAGCAACTACACTCCATGAGTGCAATGAACAACATGGATCCTAAATTGGAATCAACACAAGGAAATCAACCTTTTTGA
Protein sequence

>Msa0106840

MAAASSSTPFLEIRQENQSQITQQHQSSTDASSTAAQPLVPQKKRRNQPGTPCNIGLPSFSNEKWFEIEWEIFFPLYPDAEVIALSPKTLMATNRFVCEVCQKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHENARHPSNMNPLATHLFSTNHMSLGLSQISTQHGATNNNILSLGNIPCTPKYEHHLISPLHQSSSSSFGQQQQQQSMSSSPFFITDPNQTFQQDLHQGQFSNKQLHLHHGLMQLPDLQGNTNNNTTSSSVSPFNLSFFPNTNGNNTMHDQFNNISESHHHHHQHEGFSSLFGNSSLQQENMLSSPHMSATALLQKAAQIGSTTTTINNNNGVESDDQHQHLHGLMNSLGNGNTSIYDNNNLGQFHNVEEENKKMPSSQQSLVGNLCFGGSDKLTLDFLGVGGMVRNMSSTSGGGFSQREQQLHSMSAMNNMDPKLESTQGNQPF*