AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0106870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0106870 MtrunA17_Chr1g0163051 97.281 662 13 4 1 660 1 659 0.0 1321
Msa0106870 MtrunA17_Chr1g0163041 81.939 526 86 3 144 660 53 578 0.0 870
Msa0106870 MtrunA17_Chr8g0368901 73.673 471 120 3 192 659 299 768 0.0 746
Msa0106870 MtrunA17_Chr8g0369301 61.141 561 173 5 143 659 189 748 0.0 713
Msa0106870 MtrunA17_Chr8g0368911 50.348 719 270 11 7 658 66 764 0.0 704
Msa0106870 MtrunA17_Chr6g0467531 57.118 576 200 12 103 647 5 564 0.0 626
Msa0106870 MtrunA17_Chr6g0467381 57.043 575 202 12 103 647 5 564 0.0 620
Msa0106870 MtrunA17_Chr6g0467421 56.870 575 203 12 103 647 5 564 0.0 619
Msa0106870 MtrunA17_Chr6g0467401 56.522 575 205 12 103 647 5 564 0.0 614
Msa0106870 MtrunA17_Chr3g0094881 53.465 606 234 12 88 660 49 639 0.0 597
Msa0106870 MtrunA17_Chr6g0467411 54.669 514 174 10 161 647 1 482 0.0 529
Msa0106870 MtrunA17_Chr2g0306961 52.692 520 160 11 154 647 4 463 5.76e-178 514
Msa0106870 MtrunA17_Chr7g0255181 41.400 500 260 14 159 647 203 680 2.36e-113 356
Msa0106870 MtrunA17_Chr3g0080761 37.897 504 286 11 159 646 141 633 1.53e-107 340
Msa0106870 MtrunA17_Chr5g0399801 36.102 590 335 17 77 652 504 1065 6.09e-107 348
Msa0106870 MtrunA17_Chr8g0354821 39.960 503 279 14 159 648 167 659 4.04e-105 334
Msa0106870 MtrunA17_Chr4g0003501 35.447 615 331 19 57 650 360 929 1.64e-102 333
Msa0106870 MtrunA17_Chr4g0003511 37.302 504 286 11 159 652 545 1028 3.42e-99 327
Msa0106870 MtrunA17_Chr6g0476111 38.716 483 268 13 190 652 196 670 4.73e-90 294
Msa0106870 MtrunA17_Chr7g0252211 38.763 485 266 14 190 652 258 733 2.73e-88 291
Msa0106870 MtrunA17_Chr6g0476121 38.302 483 270 13 190 652 145 619 3.06e-87 286
Msa0106870 MtrunA17_Chr1g0170651 32.341 504 285 12 158 645 57 520 1.12e-57 204
Msa0106870 MtrunA17_Chr7g0232811 29.814 483 242 14 193 652 107 515 4.58e-55 196
Msa0106870 MtrunA17_Chr7g0232981 30.022 463 246 11 193 653 107 493 1.79e-49 180
Msa0106870 MtrunA17_Chr7g0232841 28.247 485 231 17 193 651 110 503 6.09e-44 165
Msa0106870 MtrunA17_Chr5g0448331 37.179 156 85 3 218 367 267 415 2.94e-19 92.4
Msa0106870 MtrunA17_Chr1g0190311 27.070 314 156 12 397 653 327 624 6.88e-19 90.9
Msa0106870 MtrunA17_Chr1g0183321 24.839 310 163 10 397 651 430 724 4.93e-18 88.6
Msa0106870 MtrunA17_Chr4g0075321 28.804 184 117 3 464 645 869 1040 4.94e-18 89.0
Msa0106870 MtrunA17_Chr5g0403241 29.832 238 130 7 443 659 1274 1495 6.57e-18 88.6
Msa0106870 MtrunA17_Chr8g0373821 29.508 183 115 4 464 645 346 515 9.16e-18 87.0
Msa0106870 MtrunA17_Chr8g0389931 34.615 156 89 3 218 367 261 409 1.29e-17 87.0
Msa0106870 MtrunA17_Chr6g0460921 27.027 222 135 6 441 660 215 411 4.05e-17 84.3
Msa0106870 MtrunA17_Chr7g0232861 35.333 150 81 5 193 339 106 242 5.03e-17 81.3
Msa0106870 MtrunA17_Chr7g0262001 24.679 312 151 13 397 647 388 676 2.65e-15 79.7
Msa0106870 MtrunA17_Chr7g0232761 34.591 159 84 6 193 346 123 266 6.52e-14 72.8
Msa0106870 MtrunA17_Chr3g0143561 32.000 150 91 3 218 367 187 325 7.75e-14 73.9
Msa0106870 MtrunA17_Chr7g0232751 43.077 65 37 0 588 652 31 95 1.79e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0106870 AT4G13460.1 54.819 664 268 12 10 660 6 650 0.0 707
Msa0106870 AT4G13460.2 54.819 664 268 12 10 660 6 650 0.0 707
Msa0106870 AT2G33290.1 52.374 653 268 10 21 660 29 651 0.0 674
Msa0106870 AT2G33290.3 52.374 653 268 10 21 660 29 651 0.0 674
Msa0106870 AT2G33290.4 52.374 653 268 10 21 660 29 651 0.0 674
Msa0106870 AT2G33290.2 52.374 653 268 10 21 660 29 651 0.0 674
Msa0106870 AT5G04940.2 38.889 504 277 12 159 648 155 641 3.56e-103 328
Msa0106870 AT5G04940.1 38.889 504 277 12 159 648 155 641 3.56e-103 328
Msa0106870 AT1G73100.1 40.215 465 255 12 194 648 189 640 2.92e-99 318
Msa0106870 AT2G22740.2 36.328 512 293 9 159 652 270 766 1.78e-96 314
Msa0106870 AT2G22740.1 36.328 512 293 9 159 652 270 766 1.78e-96 314
Msa0106870 AT2G35160.5 36.260 524 274 12 146 652 254 734 9.32e-96 311
Msa0106870 AT2G35160.2 36.260 524 274 12 146 652 290 770 2.52e-95 311
Msa0106870 AT2G35160.3 36.260 524 274 12 146 652 290 770 2.52e-95 311
Msa0106870 AT2G35160.1 36.260 524 274 12 146 652 290 770 2.52e-95 311
Msa0106870 AT2G35160.4 36.260 524 274 12 146 652 290 770 2.52e-95 311
Msa0106870 AT5G13960.1 36.253 491 273 16 190 654 126 602 2.98e-87 285
Msa0106870 AT5G13960.2 36.383 470 262 14 210 654 11 468 4.48e-86 278
Msa0106870 AT1G17770.1 37.124 466 269 12 195 648 209 662 2.48e-80 269
Msa0106870 AT2G24740.1 36.454 502 283 14 159 655 262 732 1.82e-76 260
Msa0106870 AT5G47150.1 36.331 278 161 7 92 367 61 324 4.56e-35 135
Msa0106870 AT5G47160.1 37.674 215 122 6 152 363 202 407 1.21e-28 119
Msa0106870 AT5G47160.3 37.674 215 122 6 152 363 202 407 1.21e-28 119
Msa0106870 AT5G47160.2 37.674 215 122 6 152 363 202 407 1.21e-28 119
Msa0106870 AT2G05900.1 36.257 171 104 3 255 425 26 191 3.03e-21 95.5
Msa0106870 AT2G23740.1 32.632 190 104 6 464 646 1177 1349 3.42e-21 99.8
Msa0106870 AT2G23740.3 32.632 190 104 6 464 646 1184 1356 3.87e-21 99.4
Msa0106870 AT2G23740.6 32.632 190 104 6 464 646 1184 1356 3.87e-21 99.4
Msa0106870 AT2G23740.2 32.632 190 104 6 464 646 1184 1356 3.87e-21 99.4
Msa0106870 AT3G03750.2 29.808 208 120 6 440 646 141 323 2.01e-18 87.8
Msa0106870 AT1G57820.1 35.669 157 87 4 218 367 277 426 6.39e-18 88.2
Msa0106870 AT1G57820.3 35.669 157 87 4 218 367 277 426 6.39e-18 88.2
Msa0106870 AT1G57820.2 35.065 154 89 4 218 367 277 423 7.49e-17 85.1
Msa0106870 AT3G04380.3 23.856 306 163 10 397 647 130 420 8.62e-16 80.9
Msa0106870 AT3G04380.2 23.856 306 163 10 397 647 119 409 9.63e-16 80.9
Msa0106870 AT3G04380.1 23.856 306 163 10 397 647 146 436 1.00e-15 80.9
Msa0106870 AT3G04380.4 23.856 306 163 10 397 647 146 436 1.05e-15 80.9
Msa0106870 AT3G04380.5 23.856 306 163 10 397 647 103 393 1.21e-15 80.5
Msa0106870 AT3G04380.6 23.856 306 163 10 397 647 119 409 1.26e-15 80.5
Msa0106870 AT5G39550.1 33.121 157 91 4 218 367 262 411 6.40e-15 79.0
Msa0106870 AT1G04050.2 25.076 331 160 11 385 647 387 697 6.67e-15 79.0
Msa0106870 AT1G04050.1 25.076 331 160 11 385 647 387 697 6.67e-15 79.0
Msa0106870 AT1G04050.3 25.382 327 164 11 385 647 283 593 8.70e-15 78.2
Msa0106870 AT2G23740.4 33.108 148 75 6 464 604 1184 1314 1.36e-14 78.2
Msa0106870 AT2G23740.5 33.108 148 75 6 464 604 1184 1314 1.36e-14 78.2
Msa0106870 AT1G66050.1 32.867 143 83 2 218 354 262 397 8.53e-14 75.1
Msa0106870 AT1G66040.1 33.566 143 82 3 218 354 262 397 8.66e-14 75.1
Msa0106870 AT5G43990.16 27.011 174 109 4 476 647 503 660 4.04e-13 73.2
Msa0106870 AT5G43990.5 27.011 174 109 4 476 647 503 660 4.04e-13 73.2
Msa0106870 AT5G43990.17 27.011 174 109 4 476 647 503 660 4.04e-13 73.2
Msa0106870 AT5G43990.14 27.011 174 109 4 476 647 503 660 4.04e-13 73.2
Msa0106870 AT5G43990.15 27.011 174 109 4 476 647 526 683 4.58e-13 73.2
Msa0106870 AT5G43990.10 27.011 174 109 4 476 647 526 683 4.58e-13 73.2
Msa0106870 AT5G43990.3 27.011 174 109 4 476 647 523 680 4.94e-13 72.8
Msa0106870 AT5G43990.11 27.011 174 109 4 476 647 523 680 4.94e-13 72.8
Msa0106870 AT5G43990.1 27.011 174 109 4 476 647 523 680 4.94e-13 72.8
Msa0106870 AT5G43990.4 27.011 174 109 4 476 647 523 680 4.94e-13 72.8
Msa0106870 AT5G43990.9 27.011 174 109 4 476 647 546 703 5.00e-13 72.8
Msa0106870 AT5G43990.2 27.011 174 109 4 476 647 546 703 5.00e-13 72.8
Msa0106870 AT5G43990.7 27.011 174 109 4 476 647 434 591 5.13e-13 72.8
Msa0106870 AT5G43990.8 27.011 174 109 4 476 647 454 611 7.00e-13 72.4
Msa0106870 AT5G43990.12 27.011 174 109 4 476 647 454 611 7.00e-13 72.4
Msa0106870 AT5G43990.6 27.011 174 109 4 476 647 454 611 7.00e-13 72.4
Msa0106870 AT5G43990.13 27.011 174 109 4 476 647 454 611 7.00e-13 72.4
Msa0106870 AT1G57800.2 31.646 158 93 5 218 367 289 439 2.75e-12 70.5
Msa0106870 AT1G57800.1 32.857 140 80 4 218 350 289 421 7.93e-12 68.9

Find 182 sgRNAs with CRISPR-Local

Find 432 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTACTAGTGTGATTGTTTC+TGG 0.079078 1_3:+16668969 Msa0106870:CDS
CTAGGTTCAGACTTAGATTT+AGG 0.191105 1_3:-16668344 None:intergenic
TTAGATTTAGGTTTAGATTT+TGG 0.203811 1_3:-16668332 None:intergenic
CGGAACCGTGTTACGCAAAA+AGG 0.220274 1_3:+16669671 Msa0106870:CDS
CATCAACAGCATCAATGTTT+TGG 0.236400 1_3:-16668482 None:intergenic
ACCGGATCAGCGTCAGTTTC+GGG 0.257025 1_3:+16668650 Msa0106870:CDS
TGGTGGTGGTTGGTTGTTCT+AGG 0.261325 1_3:-16668383 None:intergenic
TTATGATTCGGTTCGTGTTT+TGG 0.278166 1_3:+16668698 Msa0106870:CDS
CTTGCATCTGCATTTGCATC+TGG 0.286549 1_3:-16668510 None:intergenic
AGAAGCCCGCTTTGACTATA+AGG 0.293128 1_3:-16669587 None:intergenic
GGGAGACTGGTTGGGGAGTT+AGG 0.302694 1_3:+16669726 Msa0106870:CDS
TACCGGATCAGCGTCAGTTT+CGG 0.304741 1_3:+16668649 Msa0106870:CDS
GTATCCATCAATTCCTCCTT+TGG 0.310358 1_3:+16669931 Msa0106870:CDS
AATGACAGATGTTGGGTTAC+CGG 0.316260 1_3:+16668632 Msa0106870:CDS
AGAGAGTTCAGCCTTGATTA+TGG 0.322787 1_3:+16670109 Msa0106870:CDS
GCAAGCCACATTCCTCATTC+TGG 0.324681 1_3:-16669972 None:intergenic
GGTTGGAAGTGTTTAGATCT+AGG 0.329004 1_3:+16669705 Msa0106870:CDS
AGGATTGTTGGCGCGATTCC+TGG 0.334668 1_3:+16668825 Msa0106870:CDS
GATGTTGGTAAAAGTGGTTT+TGG 0.352738 1_3:+16669236 Msa0106870:CDS
CTCTTTGTGTTTCATGAAAG+TGG 0.353540 1_3:+16669488 Msa0106870:CDS
GTATGGAGCGTGTCGGTATA+AGG 0.360786 1_3:+16669396 Msa0106870:CDS
GAAGGTACTTCTTCGACTTC+GGG 0.363101 1_3:+16669164 Msa0106870:CDS
AGCTGGGATTGATTATTTGC+CGG 0.365503 1_3:+16668917 Msa0106870:CDS
ATGGAGAGGAGTATGCATTA+TGG 0.365705 1_3:+16669107 Msa0106870:CDS
TTGTGTGTGGTTGGTTTACA+TGG 0.365764 1_3:+16668885 Msa0106870:CDS
GTCAGTTTCGGGACGTTGTT+AGG 0.371088 1_3:+16668661 Msa0106870:CDS
TTTAAGTTATGGAGGATTGA+TGG 0.371705 1_3:+16669269 Msa0106870:CDS
GGCGGCGTCGACGCCGGCGC+CGG 0.374770 1_3:-16668406 None:intergenic
TAGATCTAGGGAGACTGGTT+GGG 0.375144 1_3:+16669718 Msa0106870:CDS
TGCATTATGGGATTGAGGTT+AGG 0.376465 1_3:+16669120 Msa0106870:CDS
GCTGATGGAAATGTTTGGTT+TGG 0.379538 1_3:-16668210 None:intergenic
GTTTGGATTATGAGGATTCA+TGG 0.380762 1_3:-16668193 None:intergenic
GCATTATGGGATTGAGGTTA+GGG 0.381831 1_3:+16669121 Msa0106870:CDS
GACTAGGATGGTTTATGATT+CGG 0.389828 1_3:+16668686 Msa0106870:CDS
TCGGAAAATCTCCGCCATTC+TGG 0.390186 1_3:-16668427 None:intergenic
TTCAAACAGGTGGACGGAAT+GGG 0.394764 1_3:+16669868 Msa0106870:CDS
TGAAGGTACTTCTTCGACTT+CGG 0.398545 1_3:+16669163 Msa0106870:CDS
ATGTTTATGATGGTTTGTAT+AGG 0.399652 1_3:+16669195 Msa0106870:CDS
CATTCTGGCGGCGTCGACGC+CGG 0.406416 1_3:-16668412 None:intergenic
CGGCGTCGACGCCGCCAGAA+TGG 0.408674 1_3:+16668413 Msa0106870:CDS
TCATCCCGAGGCTCTTGCTT+CGG 0.409571 1_3:-16668264 None:intergenic
TAAATGCACCAGCTTGAATA+AGG 0.411317 1_3:-16669757 None:intergenic
TGGAGAGGAGTATGCATTAT+GGG 0.415278 1_3:+16669108 Msa0106870:CDS
GTCGACGCCGGCGCCGGTGG+TGG 0.415602 1_3:-16668400 None:intergenic
TGTATAGGATTATTGAATGC+TGG 0.416427 1_3:+16669210 Msa0106870:CDS
GTAGTTGTCCGCCTCATTGT+CGG 0.419366 1_3:+16669651 Msa0106870:CDS
ACAAACTGAACCATCACATT+AGG 0.419575 1_3:-16670016 None:intergenic
GCGATTCCTGGGATTTGTAT+TGG 0.420322 1_3:+16668837 Msa0106870:CDS
CATTTATATGCGAGTACACT+GGG 0.423254 1_3:+16669774 Msa0106870:CDS
AAATCCAAAGGAGGAATTGA+TGG 0.424705 1_3:-16669935 None:intergenic
GACGCCGGCGCCGGTGGTGG+TGG 0.437295 1_3:-16668397 None:intergenic
CTTGTTCGAATGACAGATGT+TGG 0.438682 1_3:+16668624 Msa0106870:CDS
TCTTGATATTTCCAAGGGTA+TGG 0.441501 1_3:+16669379 Msa0106870:CDS
GGTAAGGTTTATGTTTATGA+TGG 0.452304 1_3:+16669185 Msa0106870:CDS
GATTGATGGTCAAGCTAAGA+TGG 0.453129 1_3:+16669283 Msa0106870:CDS
GGGGTGCTGATGGAAATGTT+TGG 0.454594 1_3:-16668215 None:intergenic
AATCGCGATAAGAGGATTGT+TGG 0.454649 1_3:+16668813 Msa0106870:CDS
GTTGGAAGTGTTTAGATCTA+GGG 0.456470 1_3:+16669706 Msa0106870:CDS
GTGTTTAGATCTAGGGAGAC+TGG 0.456502 1_3:+16669713 Msa0106870:CDS
TGTGGTTGAATCGCGATAAG+AGG 0.456612 1_3:+16668805 Msa0106870:CDS
GAACAACCAACCACCACCAC+CGG 0.462238 1_3:+16668387 Msa0106870:CDS
GCTATTGTTCCGGTTTCTGC+TGG 0.463618 1_3:+16668534 Msa0106870:CDS
CTCTTGATGTATCCAGAATG+AGG 0.465074 1_3:+16669960 Msa0106870:CDS
GATTGTTTCTGGTGGGTATG+AGG 0.465601 1_3:+16668980 Msa0106870:CDS
AATGTTTGGTTTGGATTATG+AGG 0.470379 1_3:-16668201 None:intergenic
GGCGTCGACGCCGGCGCCGG+TGG 0.471937 1_3:-16668403 None:intergenic
AGATCTAGGGAGACTGGTTG+GGG 0.471997 1_3:+16669719 Msa0106870:CDS
GTTATTATTTACTCGGGTCA+TGG 0.472036 1_3:+16669023 Msa0106870:CDS
TACTTCTTCGACTTCGGGTA+AGG 0.474074 1_3:+16669169 Msa0106870:CDS
TGGTTTGATGTTGGTAAAAG+TGG 0.475144 1_3:+16669230 Msa0106870:CDS
AGGCGATGTTATTATTTACT+CGG 0.481383 1_3:+16669016 Msa0106870:CDS
TCCCGAAACTGACGCTGATC+CGG 0.482112 1_3:-16668651 None:intergenic
GGATTGTTGGCGCGATTCCT+GGG 0.482675 1_3:+16668826 Msa0106870:CDS
TTGGCTATGGCTGAAGAAGA+AGG 0.484128 1_3:+16668717 Msa0106870:CDS
GGGACGTTGTTAGGAGGACT+AGG 0.486488 1_3:+16668670 Msa0106870:CDS
AGGATGGAGTTGTGTGTGGT+TGG 0.488005 1_3:+16668876 Msa0106870:CDS
GGCCTTGAGAAACAAAATCT+AGG 0.488155 1_3:-16668362 None:intergenic
CCGGCGCCGGTGGTGGTGGT+TGG 0.488719 1_3:-16668393 None:intergenic
GAGTATGCATTATGGGATTG+AGG 0.491128 1_3:+16669115 Msa0106870:CDS
GCTGGGATTGATTATTTGCC+GGG 0.497020 1_3:+16668918 Msa0106870:CDS
GCATTTATATGCGAGTACAC+TGG 0.498857 1_3:+16669773 Msa0106870:CDS
TTTCAAACAGGTGGACGGAA+TGG 0.498875 1_3:+16669867 Msa0106870:CDS
TTGTTCGAATGACAGATGTT+GGG 0.500232 1_3:+16668625 Msa0106870:CDS
TACACCGAAGCAAGAGCCTC+GGG 0.501130 1_3:+16668260 Msa0106870:CDS
ACCGACACGCTCCATACCCT+TGG 0.501891 1_3:-16669390 None:intergenic
GGCGATGTTATTATTTACTC+GGG 0.502452 1_3:+16669017 Msa0106870:CDS
AATTTATCTCTGATTCAAGA+TGG 0.504650 1_3:+16669893 Msa0106870:CDS
TGCCCCTCCTCCTGCTGGTG+AGG 0.508629 1_3:+16668575 Msa0106870:CDS
CATGAAAGTGGGAATGCGAC+GGG 0.511204 1_3:+16669500 Msa0106870:CDS
AAAAGGGCTTAAACATAGGT+TGG 0.511958 1_3:+16669688 Msa0106870:CDS
AATAATGCCCCTCCTCCTGC+TGG 0.512692 1_3:+16668570 Msa0106870:CDS
TATATCTCTTGATATTTCCA+AGG 0.512997 1_3:+16669373 Msa0106870:CDS
TCACATTATGCTGTTTGCGA+TGG 0.516973 1_3:+16670069 Msa0106870:CDS
GGATATTGAAATTCTTGCGT+TGG 0.517003 1_3:-16668288 None:intergenic
TCTTTGTGTTTCATGAAAGT+GGG 0.518767 1_3:+16669489 Msa0106870:CDS
TTACTCGGGTCATGGTGGAC+AGG 0.519127 1_3:+16669031 Msa0106870:CDS
ATTCGCGGTGTGAGGTATGA+AGG 0.522477 1_3:+16669146 Msa0106870:CDS
TTATTCTCACCAGCAGAAAC+CGG 0.525158 1_3:-16668543 None:intergenic
CTAGTGTGATTGTTTCTGGT+GGG 0.526236 1_3:+16668973 Msa0106870:CDS
AGCATAGGAAAAGGAATACC+AGG 0.526910 1_3:-16668237 None:intergenic
ACTAGTGTGATTGTTTCTGG+TGG 0.533046 1_3:+16668972 Msa0106870:CDS
TACATGGTCAACCACAAGCT+GGG 0.533174 1_3:+16668901 Msa0106870:CDS
ACTTTCCTTATAGTCAAAGC+GGG 0.536291 1_3:+16669582 Msa0106870:CDS
ATTGAATGCTGGTTTGATGT+TGG 0.540002 1_3:+16669221 Msa0106870:CDS
TCAAGGCTGAACTCTCTCAA+TGG 0.540411 1_3:-16670103 None:intergenic
ACAATCACACTAGTAGCAAT+CGG 0.540891 1_3:-16668963 None:intergenic
TTAGATCTAGGGAGACTGGT+TGG 0.541898 1_3:+16669717 Msa0106870:CDS
CCAACCACCACCACCGGCGC+CGG 0.541973 1_3:+16668393 Msa0106870:CDS
ATATCTCTTGATATTTCCAA+GGG 0.542298 1_3:+16669374 Msa0106870:CDS
TCATTGGACCTTATTCAAGC+TGG 0.545200 1_3:+16669749 Msa0106870:CDS
TTCATCAGAAGCTGGAAGGT+GGG 0.546457 1_3:+16669075 Msa0106870:CDS
TTCGGTGTAAGCATAGGAAA+AGG 0.548026 1_3:-16668246 None:intergenic
TTCCGACGCTCATTCACTGA+AGG 0.548549 1_3:+16668444 Msa0106870:CDS
TGGTTGGGGAGTTAGGTCAT+TGG 0.553990 1_3:+16669733 Msa0106870:CDS
TATTAATGAATCACCACTCA+TGG 0.554494 1_3:-16669831 None:intergenic
CAAAGCGGGCTTCTCTTGAA+AGG 0.554951 1_3:+16669596 Msa0106870:CDS
GCTTCTCTTGAAAGGAAAGC+CGG 0.556611 1_3:+16669604 Msa0106870:CDS
AACCTCACCAGCAGGAGGAG+GGG 0.558398 1_3:-16668577 None:intergenic
ATTGATGGTCAAGCTAAGAT+GGG 0.559091 1_3:+16669284 Msa0106870:CDS
AAGAGTGGAAAAGTAGCCCT+AGG 0.561014 1_3:-16669470 None:intergenic
TTTCATCAGAAGCTGGAAGG+TGG 0.563122 1_3:+16669074 Msa0106870:CDS
ATAACCTCACCAGCAGGAGG+AGG 0.563671 1_3:-16668579 None:intergenic
TTACATGGTCAACCACAAGC+TGG 0.564688 1_3:+16668900 Msa0106870:CDS
TCATGAAAGTGGGAATGCGA+CGG 0.565558 1_3:+16669499 Msa0106870:CDS
TCAAACAGGTGGACGGAATG+GGG 0.569248 1_3:+16669869 Msa0106870:CDS
GTGGACAGGATAAGAATTCG+AGG 0.571781 1_3:+16669045 Msa0106870:CDS
CCGGGGAGTATGAGTTCGAA+TGG 0.571907 1_3:+16668936 Msa0106870:CDS
ATTGAGGTTAGGGTTATTCG+CGG 0.572582 1_3:+16669131 Msa0106870:CDS
CGTTGTTAGGAGGACTAGGA+TGG 0.572606 1_3:+16668674 Msa0106870:CDS
ACAGGATAAGAATTCGAGGC+AGG 0.572812 1_3:+16669049 Msa0106870:CDS
AGATGCAAGAGCTATTGTTC+CGG 0.573112 1_3:+16668524 Msa0106870:CDS
CATCAGCTACACCATAATCA+AGG 0.573838 1_3:-16670120 None:intergenic
CGATGAGGAGTCGAGGATTG+TGG 0.574012 1_3:+16668787 Msa0106870:CDS
TGGCTATGGCTGAAGAAGAA+GGG 0.574030 1_3:+16668718 Msa0106870:CDS
GTATAGGATGGAGTTGTGTG+TGG 0.574388 1_3:+16668872 Msa0106870:CDS
GGCTGAACTCTCTCAATGGA+GGG 0.575518 1_3:-16670099 None:intergenic
GGAAGGTGGGAATCTTGCTA+TGG 0.576684 1_3:+16669088 Msa0106870:CDS
TCTTGCTTCGGTGTAAGCAT+AGG 0.581620 1_3:-16668252 None:intergenic
ACATTCATAACCTCACCAGC+AGG 0.581786 1_3:-16668585 None:intergenic
TAGCTCAACTCCTAATGTGA+TGG 0.586959 1_3:+16670006 Msa0106870:CDS
GAAAATCTCCGCCATTCTGG+CGG 0.591102 1_3:-16668424 None:intergenic
TAACCTCACCAGCAGGAGGA+GGG 0.592169 1_3:-16668578 None:intergenic
CTTTCATGAAACACAAAGAG+TGG 0.592723 1_3:-16669485 None:intergenic
TTACACCGAAGCAAGAGCCT+CGG 0.592731 1_3:+16668259 Msa0106870:CDS
CGTCGACGCCGCCAGAATGG+CGG 0.594115 1_3:+16668416 Msa0106870:CDS
AGGCTGAACTCTCTCAATGG+AGG 0.596120 1_3:-16670100 None:intergenic
AGTTTCGGGACGTTGTTAGG+AGG 0.598043 1_3:+16668664 Msa0106870:CDS
TCAAGAGATATAACACACAT+AGG 0.602330 1_3:-16669362 None:intergenic
TCTTGCGTTGGTTCATCCCG+AGG 0.604080 1_3:-16668276 None:intergenic
GGAGGAATTGATGGATACGA+AGG 0.604652 1_3:-16669926 None:intergenic
CTGGTGAGGTTATGAATGTA+CGG 0.606823 1_3:+16668589 Msa0106870:CDS
TTAGGGTTATTCGCGGTGTG+AGG 0.610018 1_3:+16669138 Msa0106870:CDS
ATCCTTCAGTGAATGAGCGT+CGG 0.615611 1_3:-16668446 None:intergenic
ACATCACCAATACAAATCCC+AGG 0.617403 1_3:-16668843 None:intergenic
TCAGAAATTATGACCATGAG+TGG 0.618462 1_3:+16669818 Msa0106870:CDS
GACTTTCCTTATAGTCAAAG+CGG 0.621269 1_3:+16669581 Msa0106870:CDS
ACACTGGGGTTGTTCTGACA+AGG 0.627478 1_3:+16669789 Msa0106870:CDS
CCATTCGAACTCATACTCCC+CGG 0.628119 1_3:-16668936 None:intergenic
TATGAGGATGATGTTGATGA+AGG 0.628797 1_3:+16668996 Msa0106870:CDS
GTGGGAATCTTGCTATGGAG+AGG 0.630151 1_3:+16669093 Msa0106870:CDS
GGAATTGATGGATACGAAGG+AGG 0.638458 1_3:-16669923 None:intergenic
ATCGCAAACAGCATAATGTG+AGG 0.644756 1_3:-16670067 None:intergenic
AAATAATCAATCCCAGCTTG+TGG 0.646654 1_3:-16668912 None:intergenic
GTAGCTGATGATGAGTTGAC+TGG 0.647668 1_3:+16670133 Msa0106870:CDS
CACATAGGTTTATAACACAA+AGG 0.649300 1_3:-16669347 None:intergenic
CTGGGATTGATTATTTGCCG+GGG 0.652302 1_3:+16668919 Msa0106870:CDS
TCGCAAACAGCATAATGTGA+GGG 0.654166 1_3:-16670066 None:intergenic
TGAAAGCTTCTACTACGATG+AGG 0.657632 1_3:+16668772 Msa0106870:CDS
TTCATAACCTCACCAGCAGG+AGG 0.665106 1_3:-16668582 None:intergenic
TGAGGCGGACAACTACAAGA+AGG 0.667023 1_3:-16669644 None:intergenic
CACTGGGGTTGTTCTGACAA+GGG 0.671410 1_3:+16669790 Msa0106870:CDS
ATTATTTACTCGGGTCATGG+TGG 0.676989 1_3:+16669026 Msa0106870:CDS
TCTACTACGATGAGGAGTCG+AGG 0.680653 1_3:+16668780 Msa0106870:CDS
ACACGGTTCCGACAATGAGG+CGG 0.681770 1_3:-16669659 None:intergenic
TCCAAGGGTATGGAGCGTGT+CGG 0.686880 1_3:+16669389 Msa0106870:CDS
GGAAGATACTCAAAACACAT+CGG 0.687151 1_3:-16669449 None:intergenic
GCATAGGAAAAGGAATACCA+GGG 0.688262 1_3:-16668236 None:intergenic
GTAACACGGTTCCGACAATG+AGG 0.724410 1_3:-16669662 None:intergenic
CATAGGAAAAGGAATACCAG+GGG 0.729249 1_3:-16668235 None:intergenic
TGTATCCAGAATGAGGAATG+TGG 0.734351 1_3:+16669967 Msa0106870:CDS
ATTTATATGCGAGTACACTG+GGG 0.744900 1_3:+16669775 Msa0106870:CDS
ATAGGAAAAGGAATACCAGG+GGG 0.791262 1_3:-16668234 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTTTTGTTTCATAAAAAA+TGG + chr1_3:16669554-16669573 Msa0106870:CDS 15.0%
!!! TGTTTTTGTTTCATAAAAAA+TGG + chr1_3:16669554-16669573 Msa0106870:CDS 15.0%
!!! TTAGATTTAGGTTTAGATTT+TGG - chr1_3:16668335-16668354 None:intergenic 20.0%
!!! GTGTTTTTAAGTTTAAGTTA+TGG + chr1_3:16669258-16669277 Msa0106870:CDS 20.0%
!!! TTTTTAAGTTTAAGTTATGG+AGG + chr1_3:16669261-16669280 Msa0106870:CDS 20.0%
!!! TTAGATTTAGGTTTAGATTT+TGG - chr1_3:16668335-16668354 None:intergenic 20.0%
!!! GTGTTTTTAAGTTTAAGTTA+TGG + chr1_3:16669258-16669277 Msa0106870:CDS 20.0%
!!! TTTTTAAGTTTAAGTTATGG+AGG + chr1_3:16669261-16669280 Msa0106870:CDS 20.0%
!!! TTTAGGTTTAGATTTTGGTT+CGG - chr1_3:16668330-16668349 None:intergenic 25.0%
!!! AAGAAGGGAATTTTAATGTT+AGG + chr1_3:16668733-16668752 Msa0106870:CDS 25.0%
!! ATGTTTATGATGGTTTGTAT+AGG + chr1_3:16669195-16669214 Msa0106870:CDS 25.0%
! TATATCTCTTGATATTTCCA+AGG + chr1_3:16669373-16669392 Msa0106870:CDS 25.0%
! ATATCTCTTGATATTTCCAA+GGG + chr1_3:16669374-16669393 Msa0106870:CDS 25.0%
! AATTTATCTCTGATTCAAGA+TGG + chr1_3:16669893-16669912 Msa0106870:CDS 25.0%
!!! TTTAGGTTTAGATTTTGGTT+CGG - chr1_3:16668330-16668349 None:intergenic 25.0%
!!! AAGAAGGGAATTTTAATGTT+AGG + chr1_3:16668733-16668752 Msa0106870:CDS 25.0%
!! ATGTTTATGATGGTTTGTAT+AGG + chr1_3:16669195-16669214 Msa0106870:CDS 25.0%
! TATATCTCTTGATATTTCCA+AGG + chr1_3:16669373-16669392 Msa0106870:CDS 25.0%
! ATATCTCTTGATATTTCCAA+GGG + chr1_3:16669374-16669393 Msa0106870:CDS 25.0%
! AATTTATCTCTGATTCAAGA+TGG + chr1_3:16669893-16669912 Msa0106870:CDS 25.0%
!! AATGTTTGGTTTGGATTATG+AGG - chr1_3:16668204-16668223 None:intergenic 30.0%
! TTCGGTAAATTTTCTAGGTT+TGG - chr1_3:16668312-16668331 None:intergenic 30.0%
!!! TTTGGTTCGGTAAATTTTCT+AGG - chr1_3:16668317-16668336 None:intergenic 30.0%
!! AACCTAGATTTTGTTTCTCA+AGG + chr1_3:16668360-16668379 Msa0106870:CDS 30.0%
!!! TTGGTGATGTGTTTTTGTAT+AGG + chr1_3:16668856-16668875 Msa0106870:CDS 30.0%
!! TGATGTGTTTTTGTATAGGA+TGG + chr1_3:16668860-16668879 Msa0106870:CDS 30.0%
AGGCGATGTTATTATTTACT+CGG + chr1_3:16669016-16669035 Msa0106870:CDS 30.0%
GGTAAGGTTTATGTTTATGA+TGG + chr1_3:16669185-16669204 Msa0106870:CDS 30.0%
TGTATAGGATTATTGAATGC+TGG + chr1_3:16669210-16669229 Msa0106870:CDS 30.0%
! TTTAAGTTATGGAGGATTGA+TGG + chr1_3:16669269-16669288 Msa0106870:CDS 30.0%
!! GATGGGTAGTTTGATTTTAA+AGG + chr1_3:16669301-16669320 Msa0106870:CDS 30.0%
CACATAGGTTTATAACACAA+AGG - chr1_3:16669350-16669369 None:intergenic 30.0%
TCAAGAGATATAACACACAT+AGG - chr1_3:16669365-16669384 None:intergenic 30.0%
TCTTTGTGTTTCATGAAAGT+GGG + chr1_3:16669489-16669508 Msa0106870:CDS 30.0%
TATTAATGAATCACCACTCA+TGG - chr1_3:16669834-16669853 None:intergenic 30.0%
ACATCAAGAGAAAAATCCAA+AGG - chr1_3:16669950-16669969 None:intergenic 30.0%
!! AATGTTTGGTTTGGATTATG+AGG - chr1_3:16668204-16668223 None:intergenic 30.0%
! TTCGGTAAATTTTCTAGGTT+TGG - chr1_3:16668312-16668331 None:intergenic 30.0%
!!! TTTGGTTCGGTAAATTTTCT+AGG - chr1_3:16668317-16668336 None:intergenic 30.0%
!! AACCTAGATTTTGTTTCTCA+AGG + chr1_3:16668360-16668379 Msa0106870:CDS 30.0%
!!! TTGGTGATGTGTTTTTGTAT+AGG + chr1_3:16668856-16668875 Msa0106870:CDS 30.0%
!! TGATGTGTTTTTGTATAGGA+TGG + chr1_3:16668860-16668879 Msa0106870:CDS 30.0%
AGGCGATGTTATTATTTACT+CGG + chr1_3:16669016-16669035 Msa0106870:CDS 30.0%
GGTAAGGTTTATGTTTATGA+TGG + chr1_3:16669185-16669204 Msa0106870:CDS 30.0%
TGTATAGGATTATTGAATGC+TGG + chr1_3:16669210-16669229 Msa0106870:CDS 30.0%
! TTTAAGTTATGGAGGATTGA+TGG + chr1_3:16669269-16669288 Msa0106870:CDS 30.0%
!! GATGGGTAGTTTGATTTTAA+AGG + chr1_3:16669301-16669320 Msa0106870:CDS 30.0%
CACATAGGTTTATAACACAA+AGG - chr1_3:16669350-16669369 None:intergenic 30.0%
TCAAGAGATATAACACACAT+AGG - chr1_3:16669365-16669384 None:intergenic 30.0%
TCTTTGTGTTTCATGAAAGT+GGG + chr1_3:16669489-16669508 Msa0106870:CDS 30.0%
TATTAATGAATCACCACTCA+TGG - chr1_3:16669834-16669853 None:intergenic 30.0%
ACATCAAGAGAAAAATCCAA+AGG - chr1_3:16669950-16669969 None:intergenic 30.0%
GGATATTGAAATTCTTGCGT+TGG - chr1_3:16668291-16668310 None:intergenic 35.0%
CTAGGTTCAGACTTAGATTT+AGG - chr1_3:16668347-16668366 None:intergenic 35.0%
! CATCAACAGCATCAATGTTT+TGG - chr1_3:16668485-16668504 None:intergenic 35.0%
TTGTTCGAATGACAGATGTT+GGG + chr1_3:16668625-16668644 Msa0106870:CDS 35.0%
GACTAGGATGGTTTATGATT+CGG + chr1_3:16668686-16668705 Msa0106870:CDS 35.0%
!!! TTATGATTCGGTTCGTGTTT+TGG + chr1_3:16668698-16668717 Msa0106870:CDS 35.0%
AAATAATCAATCCCAGCTTG+TGG - chr1_3:16668915-16668934 None:intergenic 35.0%
ACAATCACACTAGTAGCAAT+CGG - chr1_3:16668966-16668985 None:intergenic 35.0%
! TATGAGGATGATGTTGATGA+AGG + chr1_3:16668996-16669015 Msa0106870:CDS 35.0%
GGCGATGTTATTATTTACTC+GGG + chr1_3:16669017-16669036 Msa0106870:CDS 35.0%
GTTATTATTTACTCGGGTCA+TGG + chr1_3:16669023-16669042 Msa0106870:CDS 35.0%
!! ATTGAATGCTGGTTTGATGT+TGG + chr1_3:16669221-16669240 Msa0106870:CDS 35.0%
! TGGTTTGATGTTGGTAAAAG+TGG + chr1_3:16669230-16669249 Msa0106870:CDS 35.0%
!! GATGTTGGTAAAAGTGGTTT+TGG + chr1_3:16669236-16669255 Msa0106870:CDS 35.0%
! ATTGATGGTCAAGCTAAGAT+GGG + chr1_3:16669284-16669303 Msa0106870:CDS 35.0%
!! GGGTAGTTTGATTTTAAAGG+AGG + chr1_3:16669304-16669323 Msa0106870:CDS 35.0%
!!! TAAAGGAGGCTTTTTTGCTT+AGG + chr1_3:16669318-16669337 Msa0106870:CDS 35.0%
TCTTGATATTTCCAAGGGTA+TGG + chr1_3:16669379-16669398 Msa0106870:CDS 35.0%
GGAAGATACTCAAAACACAT+CGG - chr1_3:16669452-16669471 None:intergenic 35.0%
!! TGTGTTTTGAGTATCTTCCT+AGG + chr1_3:16669453-16669472 Msa0106870:CDS 35.0%
!! GTGTTTTGAGTATCTTCCTA+GGG + chr1_3:16669454-16669473 Msa0106870:CDS 35.0%
CTTTCATGAAACACAAAGAG+TGG - chr1_3:16669488-16669507 None:intergenic 35.0%
CTCTTTGTGTTTCATGAAAG+TGG + chr1_3:16669488-16669507 Msa0106870:CDS 35.0%
GACTTTCCTTATAGTCAAAG+CGG + chr1_3:16669581-16669600 Msa0106870:CDS 35.0%
ACTTTCCTTATAGTCAAAGC+GGG + chr1_3:16669582-16669601 Msa0106870:CDS 35.0%
AAAAGGGCTTAAACATAGGT+TGG + chr1_3:16669688-16669707 Msa0106870:CDS 35.0%
!! GTTGGAAGTGTTTAGATCTA+GGG + chr1_3:16669706-16669725 Msa0106870:CDS 35.0%
TAAATGCACCAGCTTGAATA+AGG - chr1_3:16669760-16669779 None:intergenic 35.0%
CATTTATATGCGAGTACACT+GGG + chr1_3:16669774-16669793 Msa0106870:CDS 35.0%
ATTTATATGCGAGTACACTG+GGG + chr1_3:16669775-16669794 Msa0106870:CDS 35.0%
TCAGAAATTATGACCATGAG+TGG + chr1_3:16669818-16669837 Msa0106870:CDS 35.0%
!! ATCCGAATCGTTTTTCAAAC+AGG + chr1_3:16669855-16669874 Msa0106870:CDS 35.0%
CACCTGTTTGAAAAACGATT+CGG - chr1_3:16669860-16669879 None:intergenic 35.0%
AAATCCAAAGGAGGAATTGA+TGG - chr1_3:16669938-16669957 None:intergenic 35.0%
TCAAGAGAAAAATCCAAAGG+AGG - chr1_3:16669947-16669966 None:intergenic 35.0%
ACAAACTGAACCATCACATT+AGG - chr1_3:16670019-16670038 None:intergenic 35.0%
GGATATTGAAATTCTTGCGT+TGG - chr1_3:16668291-16668310 None:intergenic 35.0%
CTAGGTTCAGACTTAGATTT+AGG - chr1_3:16668347-16668366 None:intergenic 35.0%
! CATCAACAGCATCAATGTTT+TGG - chr1_3:16668485-16668504 None:intergenic 35.0%
TTGTTCGAATGACAGATGTT+GGG + chr1_3:16668625-16668644 Msa0106870:CDS 35.0%
GACTAGGATGGTTTATGATT+CGG + chr1_3:16668686-16668705 Msa0106870:CDS 35.0%
!!! TTATGATTCGGTTCGTGTTT+TGG + chr1_3:16668698-16668717 Msa0106870:CDS 35.0%
AAATAATCAATCCCAGCTTG+TGG - chr1_3:16668915-16668934 None:intergenic 35.0%
ACAATCACACTAGTAGCAAT+CGG - chr1_3:16668966-16668985 None:intergenic 35.0%
! TATGAGGATGATGTTGATGA+AGG + chr1_3:16668996-16669015 Msa0106870:CDS 35.0%
GGCGATGTTATTATTTACTC+GGG + chr1_3:16669017-16669036 Msa0106870:CDS 35.0%
GTTATTATTTACTCGGGTCA+TGG + chr1_3:16669023-16669042 Msa0106870:CDS 35.0%
!! ATTGAATGCTGGTTTGATGT+TGG + chr1_3:16669221-16669240 Msa0106870:CDS 35.0%
! TGGTTTGATGTTGGTAAAAG+TGG + chr1_3:16669230-16669249 Msa0106870:CDS 35.0%
!! GATGTTGGTAAAAGTGGTTT+TGG + chr1_3:16669236-16669255 Msa0106870:CDS 35.0%
! ATTGATGGTCAAGCTAAGAT+GGG + chr1_3:16669284-16669303 Msa0106870:CDS 35.0%
!! GGGTAGTTTGATTTTAAAGG+AGG + chr1_3:16669304-16669323 Msa0106870:CDS 35.0%
!!! TAAAGGAGGCTTTTTTGCTT+AGG + chr1_3:16669318-16669337 Msa0106870:CDS 35.0%
TCTTGATATTTCCAAGGGTA+TGG + chr1_3:16669379-16669398 Msa0106870:CDS 35.0%
GGAAGATACTCAAAACACAT+CGG - chr1_3:16669452-16669471 None:intergenic 35.0%
!! TGTGTTTTGAGTATCTTCCT+AGG + chr1_3:16669453-16669472 Msa0106870:CDS 35.0%
!! GTGTTTTGAGTATCTTCCTA+GGG + chr1_3:16669454-16669473 Msa0106870:CDS 35.0%
CTTTCATGAAACACAAAGAG+TGG - chr1_3:16669488-16669507 None:intergenic 35.0%
CTCTTTGTGTTTCATGAAAG+TGG + chr1_3:16669488-16669507 Msa0106870:CDS 35.0%
GACTTTCCTTATAGTCAAAG+CGG + chr1_3:16669581-16669600 Msa0106870:CDS 35.0%
ACTTTCCTTATAGTCAAAGC+GGG + chr1_3:16669582-16669601 Msa0106870:CDS 35.0%
AAAAGGGCTTAAACATAGGT+TGG + chr1_3:16669688-16669707 Msa0106870:CDS 35.0%
!! GTTGGAAGTGTTTAGATCTA+GGG + chr1_3:16669706-16669725 Msa0106870:CDS 35.0%
TAAATGCACCAGCTTGAATA+AGG - chr1_3:16669760-16669779 None:intergenic 35.0%
CATTTATATGCGAGTACACT+GGG + chr1_3:16669774-16669793 Msa0106870:CDS 35.0%
ATTTATATGCGAGTACACTG+GGG + chr1_3:16669775-16669794 Msa0106870:CDS 35.0%
TCAGAAATTATGACCATGAG+TGG + chr1_3:16669818-16669837 Msa0106870:CDS 35.0%
!! ATCCGAATCGTTTTTCAAAC+AGG + chr1_3:16669855-16669874 Msa0106870:CDS 35.0%
CACCTGTTTGAAAAACGATT+CGG - chr1_3:16669860-16669879 None:intergenic 35.0%
AAATCCAAAGGAGGAATTGA+TGG - chr1_3:16669938-16669957 None:intergenic 35.0%
TCAAGAGAAAAATCCAAAGG+AGG - chr1_3:16669947-16669966 None:intergenic 35.0%
ACAAACTGAACCATCACATT+AGG - chr1_3:16670019-16670038 None:intergenic 35.0%
GCTGATGGAAATGTTTGGTT+TGG - chr1_3:16668213-16668232 None:intergenic 40.0%
ATAGGAAAAGGAATACCAGG+GGG - chr1_3:16668237-16668256 None:intergenic 40.0%
CATAGGAAAAGGAATACCAG+GGG - chr1_3:16668238-16668257 None:intergenic 40.0%
GCATAGGAAAAGGAATACCA+GGG - chr1_3:16668239-16668258 None:intergenic 40.0%
AGCATAGGAAAAGGAATACC+AGG - chr1_3:16668240-16668259 None:intergenic 40.0%
! TTCGGTGTAAGCATAGGAAA+AGG - chr1_3:16668249-16668268 None:intergenic 40.0%
GGCCTTGAGAAACAAAATCT+AGG - chr1_3:16668365-16668384 None:intergenic 40.0%
AGATGCAAGAGCTATTGTTC+CGG + chr1_3:16668524-16668543 Msa0106870:CDS 40.0%
TTATTCTCACCAGCAGAAAC+CGG - chr1_3:16668546-16668565 None:intergenic 40.0%
CTGGTGAGGTTATGAATGTA+CGG + chr1_3:16668589-16668608 Msa0106870:CDS 40.0%
CTTGTTCGAATGACAGATGT+TGG + chr1_3:16668624-16668643 Msa0106870:CDS 40.0%
AATGACAGATGTTGGGTTAC+CGG + chr1_3:16668632-16668651 Msa0106870:CDS 40.0%
TGAAAGCTTCTACTACGATG+AGG + chr1_3:16668772-16668791 Msa0106870:CDS 40.0%
AATCGCGATAAGAGGATTGT+TGG + chr1_3:16668813-16668832 Msa0106870:CDS 40.0%
ACATCACCAATACAAATCCC+AGG - chr1_3:16668846-16668865 None:intergenic 40.0%
!! TTGTGTGTGGTTGGTTTACA+TGG + chr1_3:16668885-16668904 Msa0106870:CDS 40.0%
AGCTGGGATTGATTATTTGC+CGG + chr1_3:16668917-16668936 Msa0106870:CDS 40.0%
GCTACTAGTGTGATTGTTTC+TGG + chr1_3:16668969-16668988 Msa0106870:CDS 40.0%
!! ACTAGTGTGATTGTTTCTGG+TGG + chr1_3:16668972-16668991 Msa0106870:CDS 40.0%
!! CTAGTGTGATTGTTTCTGGT+GGG + chr1_3:16668973-16668992 Msa0106870:CDS 40.0%
ATTATTTACTCGGGTCATGG+TGG + chr1_3:16669026-16669045 Msa0106870:CDS 40.0%
! GTTTTTCATCAGAAGCTGGA+AGG + chr1_3:16669071-16669090 Msa0106870:CDS 40.0%
! ATGGAGAGGAGTATGCATTA+TGG + chr1_3:16669107-16669126 Msa0106870:CDS 40.0%
! TGGAGAGGAGTATGCATTAT+GGG + chr1_3:16669108-16669127 Msa0106870:CDS 40.0%
GAGTATGCATTATGGGATTG+AGG + chr1_3:16669115-16669134 Msa0106870:CDS 40.0%
TGCATTATGGGATTGAGGTT+AGG + chr1_3:16669120-16669139 Msa0106870:CDS 40.0%
GCATTATGGGATTGAGGTTA+GGG + chr1_3:16669121-16669140 Msa0106870:CDS 40.0%
ATTGAGGTTAGGGTTATTCG+CGG + chr1_3:16669131-16669150 Msa0106870:CDS 40.0%
!! TGAAGGTACTTCTTCGACTT+CGG + chr1_3:16669163-16669182 Msa0106870:CDS 40.0%
! GATTGATGGTCAAGCTAAGA+TGG + chr1_3:16669283-16669302 Msa0106870:CDS 40.0%
! TGTCAATGTGAGAGCTTTTG+TGG + chr1_3:16669524-16669543 Msa0106870:CDS 40.0%
! GTCAATGTGAGAGCTTTTGT+GGG + chr1_3:16669525-16669544 Msa0106870:CDS 40.0%
! TCAATGTGAGAGCTTTTGTG+GGG + chr1_3:16669526-16669545 Msa0106870:CDS 40.0%
!!! AAGCCGGTCATTTTTGAATG+TGG + chr1_3:16669620-16669639 Msa0106870:CDS 40.0%
GGACCACATTCAAAAATGAC+CGG - chr1_3:16669626-16669645 None:intergenic 40.0%
! TAAGCCCTTTTTGCGTAACA+CGG - chr1_3:16669679-16669698 None:intergenic 40.0%
CGCAAAAAGGGCTTAAACAT+AGG + chr1_3:16669684-16669703 Msa0106870:CDS 40.0%
!! GGTTGGAAGTGTTTAGATCT+AGG + chr1_3:16669705-16669724 Msa0106870:CDS 40.0%
TCATTGGACCTTATTCAAGC+TGG + chr1_3:16669749-16669768 Msa0106870:CDS 40.0%
GCATTTATATGCGAGTACAC+TGG + chr1_3:16669773-16669792 Msa0106870:CDS 40.0%
!! CGAATCGTTTTTCAAACAGG+TGG + chr1_3:16669858-16669877 Msa0106870:CDS 40.0%
!! TCGTTTTTCAAACAGGTGGA+CGG + chr1_3:16669862-16669881 Msa0106870:CDS 40.0%
GTATCCATCAATTCCTCCTT+TGG + chr1_3:16669931-16669950 Msa0106870:CDS 40.0%
CTCTTGATGTATCCAGAATG+AGG + chr1_3:16669960-16669979 Msa0106870:CDS 40.0%
TGTATCCAGAATGAGGAATG+TGG + chr1_3:16669967-16669986 Msa0106870:CDS 40.0%
TAGCTCAACTCCTAATGTGA+TGG + chr1_3:16670006-16670025 Msa0106870:CDS 40.0%
TCGCAAACAGCATAATGTGA+GGG - chr1_3:16670069-16670088 None:intergenic 40.0%
ATCGCAAACAGCATAATGTG+AGG - chr1_3:16670070-16670089 None:intergenic 40.0%
! TCACATTATGCTGTTTGCGA+TGG + chr1_3:16670069-16670088 Msa0106870:CDS 40.0%
AGAGAGTTCAGCCTTGATTA+TGG + chr1_3:16670109-16670128 Msa0106870:CDS 40.0%
CATCAGCTACACCATAATCA+AGG - chr1_3:16670123-16670142 None:intergenic 40.0%
GCTGATGGAAATGTTTGGTT+TGG - chr1_3:16668213-16668232 None:intergenic 40.0%
ATAGGAAAAGGAATACCAGG+GGG - chr1_3:16668237-16668256 None:intergenic 40.0%
CATAGGAAAAGGAATACCAG+GGG - chr1_3:16668238-16668257 None:intergenic 40.0%
GCATAGGAAAAGGAATACCA+GGG - chr1_3:16668239-16668258 None:intergenic 40.0%
AGCATAGGAAAAGGAATACC+AGG - chr1_3:16668240-16668259 None:intergenic 40.0%
! TTCGGTGTAAGCATAGGAAA+AGG - chr1_3:16668249-16668268 None:intergenic 40.0%
GGCCTTGAGAAACAAAATCT+AGG - chr1_3:16668365-16668384 None:intergenic 40.0%
AGATGCAAGAGCTATTGTTC+CGG + chr1_3:16668524-16668543 Msa0106870:CDS 40.0%
TTATTCTCACCAGCAGAAAC+CGG - chr1_3:16668546-16668565 None:intergenic 40.0%
CTGGTGAGGTTATGAATGTA+CGG + chr1_3:16668589-16668608 Msa0106870:CDS 40.0%
CTTGTTCGAATGACAGATGT+TGG + chr1_3:16668624-16668643 Msa0106870:CDS 40.0%
AATGACAGATGTTGGGTTAC+CGG + chr1_3:16668632-16668651 Msa0106870:CDS 40.0%
TGAAAGCTTCTACTACGATG+AGG + chr1_3:16668772-16668791 Msa0106870:CDS 40.0%
AATCGCGATAAGAGGATTGT+TGG + chr1_3:16668813-16668832 Msa0106870:CDS 40.0%
ACATCACCAATACAAATCCC+AGG - chr1_3:16668846-16668865 None:intergenic 40.0%
!! TTGTGTGTGGTTGGTTTACA+TGG + chr1_3:16668885-16668904 Msa0106870:CDS 40.0%
AGCTGGGATTGATTATTTGC+CGG + chr1_3:16668917-16668936 Msa0106870:CDS 40.0%
GCTACTAGTGTGATTGTTTC+TGG + chr1_3:16668969-16668988 Msa0106870:CDS 40.0%
!! ACTAGTGTGATTGTTTCTGG+TGG + chr1_3:16668972-16668991 Msa0106870:CDS 40.0%
!! CTAGTGTGATTGTTTCTGGT+GGG + chr1_3:16668973-16668992 Msa0106870:CDS 40.0%
ATTATTTACTCGGGTCATGG+TGG + chr1_3:16669026-16669045 Msa0106870:CDS 40.0%
! GTTTTTCATCAGAAGCTGGA+AGG + chr1_3:16669071-16669090 Msa0106870:CDS 40.0%
! ATGGAGAGGAGTATGCATTA+TGG + chr1_3:16669107-16669126 Msa0106870:CDS 40.0%
! TGGAGAGGAGTATGCATTAT+GGG + chr1_3:16669108-16669127 Msa0106870:CDS 40.0%
GAGTATGCATTATGGGATTG+AGG + chr1_3:16669115-16669134 Msa0106870:CDS 40.0%
TGCATTATGGGATTGAGGTT+AGG + chr1_3:16669120-16669139 Msa0106870:CDS 40.0%
GCATTATGGGATTGAGGTTA+GGG + chr1_3:16669121-16669140 Msa0106870:CDS 40.0%
ATTGAGGTTAGGGTTATTCG+CGG + chr1_3:16669131-16669150 Msa0106870:CDS 40.0%
!! TGAAGGTACTTCTTCGACTT+CGG + chr1_3:16669163-16669182 Msa0106870:CDS 40.0%
! GATTGATGGTCAAGCTAAGA+TGG + chr1_3:16669283-16669302 Msa0106870:CDS 40.0%
! TGTCAATGTGAGAGCTTTTG+TGG + chr1_3:16669524-16669543 Msa0106870:CDS 40.0%
! GTCAATGTGAGAGCTTTTGT+GGG + chr1_3:16669525-16669544 Msa0106870:CDS 40.0%
! TCAATGTGAGAGCTTTTGTG+GGG + chr1_3:16669526-16669545 Msa0106870:CDS 40.0%
!!! AAGCCGGTCATTTTTGAATG+TGG + chr1_3:16669620-16669639 Msa0106870:CDS 40.0%
GGACCACATTCAAAAATGAC+CGG - chr1_3:16669626-16669645 None:intergenic 40.0%
! TAAGCCCTTTTTGCGTAACA+CGG - chr1_3:16669679-16669698 None:intergenic 40.0%
CGCAAAAAGGGCTTAAACAT+AGG + chr1_3:16669684-16669703 Msa0106870:CDS 40.0%
!! GGTTGGAAGTGTTTAGATCT+AGG + chr1_3:16669705-16669724 Msa0106870:CDS 40.0%
TCATTGGACCTTATTCAAGC+TGG + chr1_3:16669749-16669768 Msa0106870:CDS 40.0%
GCATTTATATGCGAGTACAC+TGG + chr1_3:16669773-16669792 Msa0106870:CDS 40.0%
!! CGAATCGTTTTTCAAACAGG+TGG + chr1_3:16669858-16669877 Msa0106870:CDS 40.0%
!! TCGTTTTTCAAACAGGTGGA+CGG + chr1_3:16669862-16669881 Msa0106870:CDS 40.0%
GTATCCATCAATTCCTCCTT+TGG + chr1_3:16669931-16669950 Msa0106870:CDS 40.0%
CTCTTGATGTATCCAGAATG+AGG + chr1_3:16669960-16669979 Msa0106870:CDS 40.0%
TGTATCCAGAATGAGGAATG+TGG + chr1_3:16669967-16669986 Msa0106870:CDS 40.0%
TAGCTCAACTCCTAATGTGA+TGG + chr1_3:16670006-16670025 Msa0106870:CDS 40.0%
TCGCAAACAGCATAATGTGA+GGG - chr1_3:16670069-16670088 None:intergenic 40.0%
ATCGCAAACAGCATAATGTG+AGG - chr1_3:16670070-16670089 None:intergenic 40.0%
! TCACATTATGCTGTTTGCGA+TGG + chr1_3:16670069-16670088 Msa0106870:CDS 40.0%
AGAGAGTTCAGCCTTGATTA+TGG + chr1_3:16670109-16670128 Msa0106870:CDS 40.0%
CATCAGCTACACCATAATCA+AGG - chr1_3:16670123-16670142 None:intergenic 40.0%
! TCTTGCTTCGGTGTAAGCAT+AGG - chr1_3:16668255-16668274 None:intergenic 45.0%
ATCCTTCAGTGAATGAGCGT+CGG - chr1_3:16668449-16668468 None:intergenic 45.0%
CTTGCATCTGCATTTGCATC+TGG - chr1_3:16668513-16668532 None:intergenic 45.0%
ACATTCATAACCTCACCAGC+AGG - chr1_3:16668588-16668607 None:intergenic 45.0%
!!! TTCGGTTCGTGTTTTGGCTA+TGG + chr1_3:16668704-16668723 Msa0106870:CDS 45.0%
TTGGCTATGGCTGAAGAAGA+AGG + chr1_3:16668717-16668736 Msa0106870:CDS 45.0%
TGGCTATGGCTGAAGAAGAA+GGG + chr1_3:16668718-16668737 Msa0106870:CDS 45.0%
TGTGGTTGAATCGCGATAAG+AGG + chr1_3:16668805-16668824 Msa0106870:CDS 45.0%
GCGATTCCTGGGATTTGTAT+TGG + chr1_3:16668837-16668856 Msa0106870:CDS 45.0%
GTATAGGATGGAGTTGTGTG+TGG + chr1_3:16668872-16668891 Msa0106870:CDS 45.0%
TTACATGGTCAACCACAAGC+TGG + chr1_3:16668900-16668919 Msa0106870:CDS 45.0%
TACATGGTCAACCACAAGCT+GGG + chr1_3:16668901-16668920 Msa0106870:CDS 45.0%
GCTGGGATTGATTATTTGCC+GGG + chr1_3:16668918-16668937 Msa0106870:CDS 45.0%
CTGGGATTGATTATTTGCCG+GGG + chr1_3:16668919-16668938 Msa0106870:CDS 45.0%
!! GATTGTTTCTGGTGGGTATG+AGG + chr1_3:16668980-16668999 Msa0106870:CDS 45.0%
GTGGACAGGATAAGAATTCG+AGG + chr1_3:16669045-16669064 Msa0106870:CDS 45.0%
ACAGGATAAGAATTCGAGGC+AGG + chr1_3:16669049-16669068 Msa0106870:CDS 45.0%
! GCAGGTTTTTCATCAGAAGC+TGG + chr1_3:16669067-16669086 Msa0106870:CDS 45.0%
TTTCATCAGAAGCTGGAAGG+TGG + chr1_3:16669074-16669093 Msa0106870:CDS 45.0%
TTCATCAGAAGCTGGAAGGT+GGG + chr1_3:16669075-16669094 Msa0106870:CDS 45.0%
!! GAAGGTACTTCTTCGACTTC+GGG + chr1_3:16669164-16669183 Msa0106870:CDS 45.0%
TACTTCTTCGACTTCGGGTA+AGG + chr1_3:16669169-16669188 Msa0106870:CDS 45.0%
AAGAGTGGAAAAGTAGCCCT+AGG - chr1_3:16669473-16669492 None:intergenic 45.0%
TCATGAAAGTGGGAATGCGA+CGG + chr1_3:16669499-16669518 Msa0106870:CDS 45.0%
AGAAGCCCGCTTTGACTATA+AGG - chr1_3:16669590-16669609 None:intergenic 45.0%
GCTTCTCTTGAAAGGAAAGC+CGG + chr1_3:16669604-16669623 Msa0106870:CDS 45.0%
GGAACCGTGTTACGCAAAAA+GGG + chr1_3:16669672-16669691 Msa0106870:CDS 45.0%
GTGTTTAGATCTAGGGAGAC+TGG + chr1_3:16669713-16669732 Msa0106870:CDS 45.0%
TTAGATCTAGGGAGACTGGT+TGG + chr1_3:16669717-16669736 Msa0106870:CDS 45.0%
! TAGATCTAGGGAGACTGGTT+GGG + chr1_3:16669718-16669737 Msa0106870:CDS 45.0%
TTTCAAACAGGTGGACGGAA+TGG + chr1_3:16669867-16669886 Msa0106870:CDS 45.0%
TTCAAACAGGTGGACGGAAT+GGG + chr1_3:16669868-16669887 Msa0106870:CDS 45.0%
! GGAATTGATGGATACGAAGG+AGG - chr1_3:16669926-16669945 None:intergenic 45.0%
! GGAGGAATTGATGGATACGA+AGG - chr1_3:16669929-16669948 None:intergenic 45.0%
TCAAGGCTGAACTCTCTCAA+TGG - chr1_3:16670106-16670125 None:intergenic 45.0%
! GTAGCTGATGATGAGTTGAC+TGG + chr1_3:16670133-16670152 Msa0106870:CDS 45.0%
! TCTTGCTTCGGTGTAAGCAT+AGG - chr1_3:16668255-16668274 None:intergenic 45.0%
ATCCTTCAGTGAATGAGCGT+CGG - chr1_3:16668449-16668468 None:intergenic 45.0%
CTTGCATCTGCATTTGCATC+TGG - chr1_3:16668513-16668532 None:intergenic 45.0%
ACATTCATAACCTCACCAGC+AGG - chr1_3:16668588-16668607 None:intergenic 45.0%
!!! TTCGGTTCGTGTTTTGGCTA+TGG + chr1_3:16668704-16668723 Msa0106870:CDS 45.0%
TTGGCTATGGCTGAAGAAGA+AGG + chr1_3:16668717-16668736 Msa0106870:CDS 45.0%
TGGCTATGGCTGAAGAAGAA+GGG + chr1_3:16668718-16668737 Msa0106870:CDS 45.0%
TGTGGTTGAATCGCGATAAG+AGG + chr1_3:16668805-16668824 Msa0106870:CDS 45.0%
GCGATTCCTGGGATTTGTAT+TGG + chr1_3:16668837-16668856 Msa0106870:CDS 45.0%
GTATAGGATGGAGTTGTGTG+TGG + chr1_3:16668872-16668891 Msa0106870:CDS 45.0%
TTACATGGTCAACCACAAGC+TGG + chr1_3:16668900-16668919 Msa0106870:CDS 45.0%
TACATGGTCAACCACAAGCT+GGG + chr1_3:16668901-16668920 Msa0106870:CDS 45.0%
GCTGGGATTGATTATTTGCC+GGG + chr1_3:16668918-16668937 Msa0106870:CDS 45.0%
CTGGGATTGATTATTTGCCG+GGG + chr1_3:16668919-16668938 Msa0106870:CDS 45.0%
!! GATTGTTTCTGGTGGGTATG+AGG + chr1_3:16668980-16668999 Msa0106870:CDS 45.0%
GTGGACAGGATAAGAATTCG+AGG + chr1_3:16669045-16669064 Msa0106870:CDS 45.0%
ACAGGATAAGAATTCGAGGC+AGG + chr1_3:16669049-16669068 Msa0106870:CDS 45.0%
! GCAGGTTTTTCATCAGAAGC+TGG + chr1_3:16669067-16669086 Msa0106870:CDS 45.0%
TTTCATCAGAAGCTGGAAGG+TGG + chr1_3:16669074-16669093 Msa0106870:CDS 45.0%
TTCATCAGAAGCTGGAAGGT+GGG + chr1_3:16669075-16669094 Msa0106870:CDS 45.0%
!! GAAGGTACTTCTTCGACTTC+GGG + chr1_3:16669164-16669183 Msa0106870:CDS 45.0%
TACTTCTTCGACTTCGGGTA+AGG + chr1_3:16669169-16669188 Msa0106870:CDS 45.0%
AAGAGTGGAAAAGTAGCCCT+AGG - chr1_3:16669473-16669492 None:intergenic 45.0%
TCATGAAAGTGGGAATGCGA+CGG + chr1_3:16669499-16669518 Msa0106870:CDS 45.0%
AGAAGCCCGCTTTGACTATA+AGG - chr1_3:16669590-16669609 None:intergenic 45.0%
GCTTCTCTTGAAAGGAAAGC+CGG + chr1_3:16669604-16669623 Msa0106870:CDS 45.0%
GGAACCGTGTTACGCAAAAA+GGG + chr1_3:16669672-16669691 Msa0106870:CDS 45.0%
GTGTTTAGATCTAGGGAGAC+TGG + chr1_3:16669713-16669732 Msa0106870:CDS 45.0%
TTAGATCTAGGGAGACTGGT+TGG + chr1_3:16669717-16669736 Msa0106870:CDS 45.0%
! TAGATCTAGGGAGACTGGTT+GGG + chr1_3:16669718-16669737 Msa0106870:CDS 45.0%
TTTCAAACAGGTGGACGGAA+TGG + chr1_3:16669867-16669886 Msa0106870:CDS 45.0%
TTCAAACAGGTGGACGGAAT+GGG + chr1_3:16669868-16669887 Msa0106870:CDS 45.0%
! GGAATTGATGGATACGAAGG+AGG - chr1_3:16669926-16669945 None:intergenic 45.0%
! GGAGGAATTGATGGATACGA+AGG - chr1_3:16669929-16669948 None:intergenic 45.0%
TCAAGGCTGAACTCTCTCAA+TGG - chr1_3:16670106-16670125 None:intergenic 45.0%
! GTAGCTGATGATGAGTTGAC+TGG + chr1_3:16670133-16670152 Msa0106870:CDS 45.0%
!! GGGGTGCTGATGGAAATGTT+TGG - chr1_3:16668218-16668237 None:intergenic 50.0%
TTACACCGAAGCAAGAGCCT+CGG + chr1_3:16668259-16668278 Msa0106870:CDS 50.0%
!! TGGTGGTGGTTGGTTGTTCT+AGG - chr1_3:16668386-16668405 None:intergenic 50.0%
GAAAATCTCCGCCATTCTGG+CGG - chr1_3:16668427-16668446 None:intergenic 50.0%
TCGGAAAATCTCCGCCATTC+TGG - chr1_3:16668430-16668449 None:intergenic 50.0%
TTCCGACGCTCATTCACTGA+AGG + chr1_3:16668444-16668463 Msa0106870:CDS 50.0%
GCTATTGTTCCGGTTTCTGC+TGG + chr1_3:16668534-16668553 Msa0106870:CDS 50.0%
TTCATAACCTCACCAGCAGG+AGG - chr1_3:16668585-16668604 None:intergenic 50.0%
TACCGGATCAGCGTCAGTTT+CGG + chr1_3:16668649-16668668 Msa0106870:CDS 50.0%
GTCAGTTTCGGGACGTTGTT+AGG + chr1_3:16668661-16668680 Msa0106870:CDS 50.0%
AGTTTCGGGACGTTGTTAGG+AGG + chr1_3:16668664-16668683 Msa0106870:CDS 50.0%
CGTTGTTAGGAGGACTAGGA+TGG + chr1_3:16668674-16668693 Msa0106870:CDS 50.0%
TCTACTACGATGAGGAGTCG+AGG + chr1_3:16668780-16668799 Msa0106870:CDS 50.0%
AGGATGGAGTTGTGTGTGGT+TGG + chr1_3:16668876-16668895 Msa0106870:CDS 50.0%
CCATTCGAACTCATACTCCC+CGG - chr1_3:16668939-16668958 None:intergenic 50.0%
GGAAGGTGGGAATCTTGCTA+TGG + chr1_3:16669088-16669107 Msa0106870:CDS 50.0%
! GTGGGAATCTTGCTATGGAG+AGG + chr1_3:16669093-16669112 Msa0106870:CDS 50.0%
TTAGGGTTATTCGCGGTGTG+AGG + chr1_3:16669138-16669157 Msa0106870:CDS 50.0%
ATTCGCGGTGTGAGGTATGA+AGG + chr1_3:16669146-16669165 Msa0106870:CDS 50.0%
! GTATGGAGCGTGTCGGTATA+AGG + chr1_3:16669396-16669415 Msa0106870:CDS 50.0%
CATGAAAGTGGGAATGCGAC+GGG + chr1_3:16669500-16669519 Msa0106870:CDS 50.0%
! TGTGAGAGCTTTTGTGGGGA+AGG + chr1_3:16669530-16669549 Msa0106870:CDS 50.0%
! CAAAGCGGGCTTCTCTTGAA+AGG + chr1_3:16669596-16669615 Msa0106870:CDS 50.0%
TGAGGCGGACAACTACAAGA+AGG - chr1_3:16669647-16669666 None:intergenic 50.0%
GTAGTTGTCCGCCTCATTGT+CGG + chr1_3:16669651-16669670 Msa0106870:CDS 50.0%
GTAACACGGTTCCGACAATG+AGG - chr1_3:16669665-16669684 None:intergenic 50.0%
CGGAACCGTGTTACGCAAAA+AGG + chr1_3:16669671-16669690 Msa0106870:CDS 50.0%
! AGATCTAGGGAGACTGGTTG+GGG + chr1_3:16669719-16669738 Msa0106870:CDS 50.0%
TGGTTGGGGAGTTAGGTCAT+TGG + chr1_3:16669733-16669752 Msa0106870:CDS 50.0%
ACACTGGGGTTGTTCTGACA+AGG + chr1_3:16669789-16669808 Msa0106870:CDS 50.0%
CACTGGGGTTGTTCTGACAA+GGG + chr1_3:16669790-16669809 Msa0106870:CDS 50.0%
TCAAACAGGTGGACGGAATG+GGG + chr1_3:16669869-16669888 Msa0106870:CDS 50.0%
GCAAGCCACATTCCTCATTC+TGG - chr1_3:16669975-16669994 None:intergenic 50.0%
GGCTGAACTCTCTCAATGGA+GGG - chr1_3:16670102-16670121 None:intergenic 50.0%
AGGCTGAACTCTCTCAATGG+AGG - chr1_3:16670103-16670122 None:intergenic 50.0%
!! GGGGTGCTGATGGAAATGTT+TGG - chr1_3:16668218-16668237 None:intergenic 50.0%
TTACACCGAAGCAAGAGCCT+CGG + chr1_3:16668259-16668278 Msa0106870:CDS 50.0%
!! TGGTGGTGGTTGGTTGTTCT+AGG - chr1_3:16668386-16668405 None:intergenic 50.0%
GAAAATCTCCGCCATTCTGG+CGG - chr1_3:16668427-16668446 None:intergenic 50.0%
TCGGAAAATCTCCGCCATTC+TGG - chr1_3:16668430-16668449 None:intergenic 50.0%
TTCCGACGCTCATTCACTGA+AGG + chr1_3:16668444-16668463 Msa0106870:CDS 50.0%
GCTATTGTTCCGGTTTCTGC+TGG + chr1_3:16668534-16668553 Msa0106870:CDS 50.0%
TTCATAACCTCACCAGCAGG+AGG - chr1_3:16668585-16668604 None:intergenic 50.0%
TACCGGATCAGCGTCAGTTT+CGG + chr1_3:16668649-16668668 Msa0106870:CDS 50.0%
GTCAGTTTCGGGACGTTGTT+AGG + chr1_3:16668661-16668680 Msa0106870:CDS 50.0%
AGTTTCGGGACGTTGTTAGG+AGG + chr1_3:16668664-16668683 Msa0106870:CDS 50.0%
CGTTGTTAGGAGGACTAGGA+TGG + chr1_3:16668674-16668693 Msa0106870:CDS 50.0%
TCTACTACGATGAGGAGTCG+AGG + chr1_3:16668780-16668799 Msa0106870:CDS 50.0%
AGGATGGAGTTGTGTGTGGT+TGG + chr1_3:16668876-16668895 Msa0106870:CDS 50.0%
CCATTCGAACTCATACTCCC+CGG - chr1_3:16668939-16668958 None:intergenic 50.0%
GGAAGGTGGGAATCTTGCTA+TGG + chr1_3:16669088-16669107 Msa0106870:CDS 50.0%
! GTGGGAATCTTGCTATGGAG+AGG + chr1_3:16669093-16669112 Msa0106870:CDS 50.0%
TTAGGGTTATTCGCGGTGTG+AGG + chr1_3:16669138-16669157 Msa0106870:CDS 50.0%
ATTCGCGGTGTGAGGTATGA+AGG + chr1_3:16669146-16669165 Msa0106870:CDS 50.0%
! GTATGGAGCGTGTCGGTATA+AGG + chr1_3:16669396-16669415 Msa0106870:CDS 50.0%
CATGAAAGTGGGAATGCGAC+GGG + chr1_3:16669500-16669519 Msa0106870:CDS 50.0%
! TGTGAGAGCTTTTGTGGGGA+AGG + chr1_3:16669530-16669549 Msa0106870:CDS 50.0%
! CAAAGCGGGCTTCTCTTGAA+AGG + chr1_3:16669596-16669615 Msa0106870:CDS 50.0%
TGAGGCGGACAACTACAAGA+AGG - chr1_3:16669647-16669666 None:intergenic 50.0%
GTAGTTGTCCGCCTCATTGT+CGG + chr1_3:16669651-16669670 Msa0106870:CDS 50.0%
GTAACACGGTTCCGACAATG+AGG - chr1_3:16669665-16669684 None:intergenic 50.0%
CGGAACCGTGTTACGCAAAA+AGG + chr1_3:16669671-16669690 Msa0106870:CDS 50.0%
! AGATCTAGGGAGACTGGTTG+GGG + chr1_3:16669719-16669738 Msa0106870:CDS 50.0%
TGGTTGGGGAGTTAGGTCAT+TGG + chr1_3:16669733-16669752 Msa0106870:CDS 50.0%
ACACTGGGGTTGTTCTGACA+AGG + chr1_3:16669789-16669808 Msa0106870:CDS 50.0%
CACTGGGGTTGTTCTGACAA+GGG + chr1_3:16669790-16669809 Msa0106870:CDS 50.0%
TCAAACAGGTGGACGGAATG+GGG + chr1_3:16669869-16669888 Msa0106870:CDS 50.0%
GCAAGCCACATTCCTCATTC+TGG - chr1_3:16669975-16669994 None:intergenic 50.0%
GGCTGAACTCTCTCAATGGA+GGG - chr1_3:16670102-16670121 None:intergenic 50.0%
AGGCTGAACTCTCTCAATGG+AGG - chr1_3:16670103-16670122 None:intergenic 50.0%
ACATTTCCATCAGCACCCCC+TGG + chr1_3:16668219-16668238 Msa0106870:CDS 55.0%
TACACCGAAGCAAGAGCCTC+GGG + chr1_3:16668260-16668279 Msa0106870:CDS 55.0%
TCATCCCGAGGCTCTTGCTT+CGG - chr1_3:16668267-16668286 None:intergenic 55.0%
!! TCTTGCGTTGGTTCATCCCG+AGG - chr1_3:16668279-16668298 None:intergenic 55.0%
GAACAACCAACCACCACCAC+CGG + chr1_3:16668387-16668406 Msa0106870:CDS 55.0%
AATAATGCCCCTCCTCCTGC+TGG + chr1_3:16668570-16668589 Msa0106870:CDS 55.0%
TAACCTCACCAGCAGGAGGA+GGG - chr1_3:16668581-16668600 None:intergenic 55.0%
ATAACCTCACCAGCAGGAGG+AGG - chr1_3:16668582-16668601 None:intergenic 55.0%
ACCGGATCAGCGTCAGTTTC+GGG + chr1_3:16668650-16668669 Msa0106870:CDS 55.0%
TCCCGAAACTGACGCTGATC+CGG - chr1_3:16668654-16668673 None:intergenic 55.0%
GGGACGTTGTTAGGAGGACT+AGG + chr1_3:16668670-16668689 Msa0106870:CDS 55.0%
CGATGAGGAGTCGAGGATTG+TGG + chr1_3:16668787-16668806 Msa0106870:CDS 55.0%
AGGATTGTTGGCGCGATTCC+TGG + chr1_3:16668825-16668844 Msa0106870:CDS 55.0%
GGATTGTTGGCGCGATTCCT+GGG + chr1_3:16668826-16668845 Msa0106870:CDS 55.0%
! CCGGGGAGTATGAGTTCGAA+TGG + chr1_3:16668936-16668955 Msa0106870:CDS 55.0%
!! TTACTCGGGTCATGGTGGAC+AGG + chr1_3:16669031-16669050 Msa0106870:CDS 55.0%
! TCCAAGGGTATGGAGCGTGT+CGG + chr1_3:16669389-16669408 Msa0106870:CDS 55.0%
ACACGGTTCCGACAATGAGG+CGG - chr1_3:16669662-16669681 None:intergenic 55.0%
ACATTTCCATCAGCACCCCC+TGG + chr1_3:16668219-16668238 Msa0106870:CDS 55.0%
TACACCGAAGCAAGAGCCTC+GGG + chr1_3:16668260-16668279 Msa0106870:CDS 55.0%
TCATCCCGAGGCTCTTGCTT+CGG - chr1_3:16668267-16668286 None:intergenic 55.0%
!! TCTTGCGTTGGTTCATCCCG+AGG - chr1_3:16668279-16668298 None:intergenic 55.0%
GAACAACCAACCACCACCAC+CGG + chr1_3:16668387-16668406 Msa0106870:CDS 55.0%
AATAATGCCCCTCCTCCTGC+TGG + chr1_3:16668570-16668589 Msa0106870:CDS 55.0%
TAACCTCACCAGCAGGAGGA+GGG - chr1_3:16668581-16668600 None:intergenic 55.0%
ATAACCTCACCAGCAGGAGG+AGG - chr1_3:16668582-16668601 None:intergenic 55.0%
ACCGGATCAGCGTCAGTTTC+GGG + chr1_3:16668650-16668669 Msa0106870:CDS 55.0%
TCCCGAAACTGACGCTGATC+CGG - chr1_3:16668654-16668673 None:intergenic 55.0%
GGGACGTTGTTAGGAGGACT+AGG + chr1_3:16668670-16668689 Msa0106870:CDS 55.0%
CGATGAGGAGTCGAGGATTG+TGG + chr1_3:16668787-16668806 Msa0106870:CDS 55.0%
AGGATTGTTGGCGCGATTCC+TGG + chr1_3:16668825-16668844 Msa0106870:CDS 55.0%
GGATTGTTGGCGCGATTCCT+GGG + chr1_3:16668826-16668845 Msa0106870:CDS 55.0%
! CCGGGGAGTATGAGTTCGAA+TGG + chr1_3:16668936-16668955 Msa0106870:CDS 55.0%
!! TTACTCGGGTCATGGTGGAC+AGG + chr1_3:16669031-16669050 Msa0106870:CDS 55.0%
! TCCAAGGGTATGGAGCGTGT+CGG + chr1_3:16669389-16669408 Msa0106870:CDS 55.0%
ACACGGTTCCGACAATGAGG+CGG - chr1_3:16669662-16669681 None:intergenic 55.0%
!! GGAATACCAGGGGGTGCTGA+TGG - chr1_3:16668228-16668247 None:intergenic 60.0%
AACCTCACCAGCAGGAGGAG+GGG - chr1_3:16668580-16668599 None:intergenic 60.0%
ACCGACACGCTCCATACCCT+TGG - chr1_3:16669393-16669412 None:intergenic 60.0%
! GGGAGACTGGTTGGGGAGTT+AGG + chr1_3:16669726-16669745 Msa0106870:CDS 60.0%
!! GGAATACCAGGGGGTGCTGA+TGG - chr1_3:16668228-16668247 None:intergenic 60.0%
AACCTCACCAGCAGGAGGAG+GGG - chr1_3:16668580-16668599 None:intergenic 60.0%
ACCGACACGCTCCATACCCT+TGG - chr1_3:16669393-16669412 None:intergenic 60.0%
! GGGAGACTGGTTGGGGAGTT+AGG + chr1_3:16669726-16669745 Msa0106870:CDS 60.0%
!! CATTCTGGCGGCGTCGACGC+CGG - chr1_3:16668415-16668434 None:intergenic 70.0%
CGTCGACGCCGCCAGAATGG+CGG + chr1_3:16668416-16668435 Msa0106870:CDS 70.0%
TGCCCCTCCTCCTGCTGGTG+AGG + chr1_3:16668575-16668594 Msa0106870:CDS 70.0%
!! CATTCTGGCGGCGTCGACGC+CGG - chr1_3:16668415-16668434 None:intergenic 70.0%
CGTCGACGCCGCCAGAATGG+CGG + chr1_3:16668416-16668435 Msa0106870:CDS 70.0%
TGCCCCTCCTCCTGCTGGTG+AGG + chr1_3:16668575-16668594 Msa0106870:CDS 70.0%
CCAACCACCACCACCGGCGC+CGG + chr1_3:16668393-16668412 Msa0106870:CDS 75.0%
!! CGGCGTCGACGCCGCCAGAA+TGG + chr1_3:16668413-16668432 Msa0106870:CDS 75.0%
CCAACCACCACCACCGGCGC+CGG + chr1_3:16668393-16668412 Msa0106870:CDS 75.0%
!! CGGCGTCGACGCCGCCAGAA+TGG + chr1_3:16668413-16668432 Msa0106870:CDS 75.0%
!!! CCGGCGCCGGTGGTGGTGGT+TGG - chr1_3:16668396-16668415 None:intergenic 80.0%
!!! CCGGCGCCGGTGGTGGTGGT+TGG - chr1_3:16668396-16668415 None:intergenic 80.0%
!!! GACGCCGGCGCCGGTGGTGG+TGG - chr1_3:16668400-16668419 None:intergenic 85.0%
!!! GTCGACGCCGGCGCCGGTGG+TGG - chr1_3:16668403-16668422 None:intergenic 85.0%
!!! GACGCCGGCGCCGGTGGTGG+TGG - chr1_3:16668400-16668419 None:intergenic 85.0%
!!! GTCGACGCCGGCGCCGGTGG+TGG - chr1_3:16668403-16668422 None:intergenic 85.0%
!!! GGCGTCGACGCCGGCGCCGG+TGG - chr1_3:16668406-16668425 None:intergenic 90.0%
!!! GGCGGCGTCGACGCCGGCGC+CGG - chr1_3:16668409-16668428 None:intergenic 90.0%
!!! GGCGTCGACGCCGGCGCCGG+TGG - chr1_3:16668406-16668425 None:intergenic 90.0%
!!! GGCGGCGTCGACGCCGGCGC+CGG - chr1_3:16668409-16668428 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 16668195 16670177 16668195 ID=Msa0106870;Name=Msa0106870
chr1_3 mRNA 16668195 16670177 16668195 ID=Msa0106870-mRNA-1;Parent=Msa0106870;Name=Msa0106870-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|-1|0|1|-1|1|1|0|660
chr1_3 exon 16668195 16670177 16668195 ID=Msa0106870-mRNA-1:exon:6260;Parent=Msa0106870-mRNA-1
chr1_3 CDS 16668195 16670177 16668195 ID=Msa0106870-mRNA-1:cds;Parent=Msa0106870-mRNA-1
Gene Sequence

>Msa0106870

ATGAATCCTCATAATCCAAACCAAACATTTCCATCAGCACCCCCTGGTATTCCTTTTCCTATGCTTACACCGAAGCAAGAGCCTCGGGATGAACCAACGCAAGAATTTCAATATCCAAACCTAGAAAATTTACCGAACCAAAATCTAAACCTAAATCTAAGTCTGAACCTAGATTTTGTTTCTCAAGGCCTAGAACAACCAACCACCACCACCGGCGCCGGCGTCGACGCCGCCAGAATGGCGGAGATTTTCCGACGCTCATTCACTGAAGGATTACAACGACAAATCCAAAACATTGATGCTGTTGATGAAAATCCAGATGCAAATGCAGATGCAAGAGCTATTGTTCCGGTTTCTGCTGGTGAGAATAATTACAATAATGCCCCTCCTCCTGCTGGTGAGGTTATGAATGTACGGAAACATAAAGAGCTTGTTCGAATGACAGATGTTGGGTTACCGGATCAGCGTCAGTTTCGGGACGTTGTTAGGAGGACTAGGATGGTTTATGATTCGGTTCGTGTTTTGGCTATGGCTGAAGAAGAAGGGAATTTTAATGTTAGGAGAGTGAGAAGTGATTTGAAAGCTTCTACTACGATGAGGAGTCGAGGATTGTGGTTGAATCGCGATAAGAGGATTGTTGGCGCGATTCCTGGGATTTGTATTGGTGATGTGTTTTTGTATAGGATGGAGTTGTGTGTGGTTGGTTTACATGGTCAACCACAAGCTGGGATTGATTATTTGCCGGGGAGTATGAGTTCGAATGGTGAACCGATTGCTACTAGTGTGATTGTTTCTGGTGGGTATGAGGATGATGTTGATGAAGGCGATGTTATTATTTACTCGGGTCATGGTGGACAGGATAAGAATTCGAGGCAGGTTTTTCATCAGAAGCTGGAAGGTGGGAATCTTGCTATGGAGAGGAGTATGCATTATGGGATTGAGGTTAGGGTTATTCGCGGTGTGAGGTATGAAGGTACTTCTTCGACTTCGGGTAAGGTTTATGTTTATGATGGTTTGTATAGGATTATTGAATGCTGGTTTGATGTTGGTAAAAGTGGTTTTGGTGTTTTTAAGTTTAAGTTATGGAGGATTGATGGTCAAGCTAAGATGGGTAGTTTGATTTTAAAGGAGGCTTTTTTGCTTAGGAGAGATCCTTTGTGTTATAAACCTATGTGTGTTATATCTCTTGATATTTCCAAGGGTATGGAGCGTGTCGGTATAAGGCTTTTTAATGATATTGATAAATGTAATGATCCGATGTGTTTTGAGTATCTTCCTAGGGCTACTTTTCCACTCTTTGTGTTTCATGAAAGTGGGAATGCGACGGGTTGTCAATGTGAGAGCTTTTGTGGGGAAGGATGTTTTTGTTTCATAAAAAATGGAAATGACTTTCCTTATAGTCAAAGCGGGCTTCTCTTGAAAGGAAAGCCGGTCATTTTTGAATGTGGTCCTTCTTGTAGTTGTCCGCCTCATTGTCGGAACCGTGTTACGCAAAAAGGGCTTAAACATAGGTTGGAAGTGTTTAGATCTAGGGAGACTGGTTGGGGAGTTAGGTCATTGGACCTTATTCAAGCTGGTGCATTTATATGCGAGTACACTGGGGTTGTTCTGACAAGGGAGCAATCAGAAATTATGACCATGAGTGGTGATTCATTAATATATCCGAATCGTTTTTCAAACAGGTGGACGGAATGGGGTAATTTATCTCTGATTCAAGATGGTTATGTGCCTCCTTCGTATCCATCAATTCCTCCTTTGGATTTTTCTCTTGATGTATCCAGAATGAGGAATGTGGCTTGCTATATAAGTCATAGCTCAACTCCTAATGTGATGGTTCAGTTTGTTTTGTATGATCATAATAATTTGATGTTCCCTCACATTATGCTGTTTGCGATGGAGAACATCCCTCCATTGAGAGAGTTCAGCCTTGATTATGGTGTAGCTGATGATGAGTTGACTGGCAAGCTCGTAATATGCAACTGA
Protein sequence

>Msa0106870

MNPHNPNQTFPSAPPGIPFPMLTPKQEPRDEPTQEFQYPNLENLPNQNLNLNLSLNLDFVSQGLEQPTTTTGAGVDAARMAEIFRRSFTEGLQRQIQNIDAVDENPDANADARAIVPVSAGENNYNNAPPPAGEVMNVRKHKELVRMTDVGLPDQRQFRDVVRRTRMVYDSVRVLAMAEEEGNFNVRRVRSDLKASTTMRSRGLWLNRDKRIVGAIPGICIGDVFLYRMELCVVGLHGQPQAGIDYLPGSMSSNGEPIATSVIVSGGYEDDVDEGDVIIYSGHGGQDKNSRQVFHQKLEGGNLAMERSMHYGIEVRVIRGVRYEGTSSTSGKVYVYDGLYRIIECWFDVGKSGFGVFKFKLWRIDGQAKMGSLILKEAFLLRRDPLCYKPMCVISLDISKGMERVGIRLFNDIDKCNDPMCFEYLPRATFPLFVFHESGNATGCQCESFCGEGCFCFIKNGNDFPYSQSGLLLKGKPVIFECGPSCSCPPHCRNRVTQKGLKHRLEVFRSRETGWGVRSLDLIQAGAFICEYTGVVLTREQSEIMTMSGDSLIYPNRFSNRWTEWGNLSLIQDGYVPPSYPSIPPLDFSLDVSRMRNVACYISHSSTPNVMVQFVLYDHNNLMFPHIMLFAMENIPPLREFSLDYGVADDELTGKLVICN*