Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106880 | XP_024636868.1 | 69.677 | 310 | 66 | 2 | 1 | 285 | 1 | 307 | 5.88e-151 | 435 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106880 | sp|Q84R27|Y3896_ARATH | 32.584 | 89 | 59 | 1 | 15 | 103 | 30 | 117 | 1.27e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106880 | A0A396IHE6 | 69.677 | 310 | 66 | 2 | 1 | 285 | 1 | 307 | 2.81e-151 | 435 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0106880 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106880 | MtrunA17_Chr4g0067431 | 69.677 | 310 | 66 | 2 | 1 | 285 | 1 | 307 | 5.41e-155 | 435 |
| Msa0106880 | MtrunA17_Chr1g0163221 | 56.494 | 308 | 89 | 6 | 1 | 285 | 1 | 286 | 2.08e-104 | 308 |
| Msa0106880 | MtrunA17_Chr1g0163061 | 66.038 | 265 | 22 | 2 | 1 | 197 | 1 | 265 | 2.34e-98 | 290 |
| Msa0106880 | MtrunA17_Chr6g0467351 | 59.111 | 225 | 76 | 1 | 1 | 209 | 1 | 225 | 2.05e-89 | 265 |
| Msa0106880 | MtrunA17_Chr6g0467361 | 60.000 | 75 | 30 | 0 | 211 | 285 | 8 | 82 | 2.16e-29 | 107 |
| Msa0106880 | MtrunA17_Chr3g0131891 | 32.753 | 287 | 163 | 10 | 9 | 275 | 13 | 289 | 2.82e-28 | 110 |
| Msa0106880 | MtrunA17_Chr7g0233561 | 30.137 | 292 | 166 | 9 | 13 | 275 | 16 | 298 | 8.11e-28 | 109 |
| Msa0106880 | MtrunA17_Chr8g0390841 | 29.180 | 305 | 154 | 12 | 13 | 277 | 37 | 319 | 7.60e-26 | 106 |
| Msa0106880 | MtrunA17_Chr1g0163261 | 26.592 | 267 | 188 | 6 | 15 | 277 | 9 | 271 | 3.23e-25 | 102 |
| Msa0106880 | MtrunA17_Chr1g0208771 | 24.910 | 277 | 168 | 8 | 30 | 276 | 12 | 278 | 1.11e-23 | 100 |
| Msa0106880 | MtrunA17_Chr1g0163071 | 26.897 | 290 | 153 | 9 | 31 | 277 | 2 | 275 | 2.87e-23 | 97.1 |
| Msa0106880 | MtrunA17_Chr1g0163181 | 27.574 | 272 | 171 | 10 | 24 | 275 | 14 | 279 | 3.08e-23 | 98.6 |
| Msa0106880 | MtrunA17_Chr1g0163131 | 29.866 | 298 | 177 | 12 | 12 | 284 | 15 | 305 | 4.65e-23 | 96.3 |
| Msa0106880 | MtrunA17_Chr1g0163251 | 29.137 | 278 | 164 | 12 | 15 | 277 | 9 | 268 | 1.57e-22 | 96.3 |
| Msa0106880 | MtrunA17_Chr3g0103181 | 27.397 | 292 | 148 | 8 | 13 | 275 | 10 | 266 | 1.32e-21 | 92.0 |
| Msa0106880 | MtrunA17_Chr3g0103151 | 46.154 | 91 | 46 | 2 | 13 | 103 | 10 | 97 | 2.00e-20 | 85.9 |
| Msa0106880 | MtrunA17_Chr7g0233571 | 35.057 | 174 | 94 | 6 | 13 | 179 | 8 | 169 | 3.76e-19 | 84.0 |
| Msa0106880 | MtrunA17_Chr1g0163201 | 24.806 | 258 | 178 | 8 | 30 | 275 | 18 | 271 | 3.38e-18 | 84.0 |
| Msa0106880 | MtrunA17_Chr7g0233541 | 28.571 | 273 | 165 | 11 | 31 | 278 | 2 | 269 | 5.36e-17 | 79.3 |
| Msa0106880 | MtrunA17_Chr7g0233521 | 27.203 | 261 | 167 | 7 | 31 | 278 | 2 | 252 | 1.23e-16 | 78.2 |
| Msa0106880 | MtrunA17_Chr1g0163101 | 40.594 | 101 | 54 | 4 | 12 | 110 | 14 | 110 | 3.57e-16 | 75.1 |
| Msa0106880 | MtrunA17_Chr3g0103191 | 25.969 | 258 | 134 | 8 | 10 | 240 | 7 | 234 | 7.85e-16 | 75.5 |
| Msa0106880 | MtrunA17_Chr1g0154161 | 25.874 | 286 | 171 | 9 | 13 | 275 | 28 | 295 | 9.74e-16 | 76.3 |
| Msa0106880 | MtrunA17_Chr1g0163231 | 23.741 | 278 | 178 | 10 | 15 | 277 | 9 | 267 | 1.00e-15 | 75.9 |
| Msa0106880 | MtrunA17_Chr1g0171611 | 24.815 | 270 | 173 | 10 | 15 | 277 | 9 | 255 | 1.34e-15 | 75.5 |
| Msa0106880 | MtrunA17_Chr3g0103171 | 26.641 | 259 | 166 | 9 | 30 | 275 | 5 | 252 | 2.17e-15 | 74.3 |
| Msa0106880 | MtrunA17_Chr7g0233531 | 27.863 | 262 | 164 | 9 | 31 | 278 | 2 | 252 | 3.04e-15 | 74.3 |
| Msa0106880 | MtrunA17_Chr3g0077411 | 24.460 | 278 | 161 | 11 | 13 | 275 | 260 | 503 | 8.52e-15 | 74.3 |
| Msa0106880 | MtrunA17_Chr3g0077411 | 24.731 | 279 | 154 | 8 | 14 | 289 | 24 | 249 | 2.80e-11 | 63.9 |
| Msa0106880 | MtrunA17_Chr1g0154131 | 25.362 | 276 | 177 | 9 | 26 | 279 | 193 | 461 | 1.20e-14 | 73.9 |
| Msa0106880 | MtrunA17_Chr5g0419201 | 38.202 | 89 | 54 | 1 | 15 | 103 | 16 | 103 | 2.29e-13 | 67.4 |
| Msa0106880 | MtrunA17_Chr1g0163081 | 41.463 | 82 | 42 | 4 | 31 | 110 | 6 | 83 | 5.83e-13 | 65.1 |
| Msa0106880 | MtrunA17_Chr1g0162161 | 41.463 | 82 | 42 | 4 | 31 | 110 | 4 | 81 | 9.43e-13 | 65.1 |
| Msa0106880 | MtrunA17_Chr5g0429931 | 26.744 | 258 | 152 | 10 | 30 | 282 | 10 | 235 | 1.05e-12 | 66.6 |
| Msa0106880 | MtrunA17_Chr1g0163121 | 42.857 | 84 | 42 | 4 | 29 | 110 | 9 | 88 | 1.10e-12 | 64.3 |
| Msa0106880 | MtrunA17_Chr3g0077461 | 25.993 | 277 | 152 | 9 | 14 | 285 | 236 | 464 | 1.74e-12 | 67.4 |
| Msa0106880 | MtrunA17_Chr6g0476181 | 42.466 | 73 | 38 | 3 | 31 | 103 | 2 | 70 | 9.72e-12 | 62.0 |
| Msa0106880 | MtrunA17_Chr1g0163191 | 37.975 | 79 | 46 | 2 | 24 | 102 | 14 | 89 | 2.19e-11 | 61.2 |
| Msa0106880 | MtrunA17_Chr1g0154151 | 26.568 | 271 | 152 | 10 | 47 | 275 | 36 | 301 | 2.58e-11 | 63.2 |
| Msa0106880 | MtrunA17_Chr3g0077451 | 24.806 | 258 | 140 | 8 | 29 | 277 | 10 | 222 | 4.42e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106880 | AT3G18990.1 | 24.925 | 333 | 176 | 10 | 15 | 282 | 6 | 329 | 4.87e-19 | 86.3 |
| Msa0106880 | AT3G18990.2 | 23.708 | 329 | 185 | 9 | 15 | 282 | 6 | 329 | 3.29e-18 | 84.0 |
| Msa0106880 | AT3G18960.2 | 32.584 | 89 | 59 | 1 | 15 | 103 | 30 | 117 | 1.28e-12 | 65.9 |
| Msa0106880 | AT3G18960.1 | 32.584 | 89 | 59 | 1 | 15 | 103 | 30 | 117 | 1.29e-12 | 65.9 |
| Msa0106880 | AT4G01580.1 | 30.337 | 89 | 61 | 1 | 15 | 103 | 30 | 117 | 1.74e-11 | 62.4 |
Find 38 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACACAATAATTTGAAATT+TGG | 0.165877 | 1_3:+16676410 | Msa0106880:CDS |
| CATCCTATGCAGATGTTTCT+TGG | 0.218396 | 1_3:-16676276 | None:intergenic |
| GAAGACGGTGATGGAGATTT+TGG | 0.242854 | 1_3:-16675504 | None:intergenic |
| TTTGGAAGCTTTAGAGTAAC+TGG | 0.268635 | 1_3:-16675214 | None:intergenic |
| CTTCATCACGGCGAGGTAAA+AGG | 0.303506 | 1_3:+16675481 | Msa0106880:CDS |
| ATCATTTATATATTTGCATT+TGG | 0.334724 | 1_3:-16677038 | None:intergenic |
| AAACTAGTCATCAAACTGTT+TGG | 0.380683 | 1_3:+16675266 | Msa0106880:CDS |
| AATAGCAACTTGGAATGAAA+TGG | 0.399456 | 1_3:-16676471 | None:intergenic |
| TACGAAATCTTGCATGTGCT+TGG | 0.404989 | 1_3:-16675596 | None:intergenic |
| AACTAGTTGTGATGATCTTA+AGG | 0.416202 | 1_3:+16675764 | Msa0106880:CDS |
| AAATCTTCAAGAAGGAAAAC+TGG | 0.419117 | 1_3:+16674944 | Msa0106880:CDS |
| TGCCCATAAGTTTCGTGAAA+AGG | 0.442811 | 1_3:+16675170 | Msa0106880:CDS |
| CCAACCATTGTCCACATCCT+TGG | 0.446067 | 1_3:-16675622 | None:intergenic |
| AATAATCAATATACATTAAG+TGG | 0.456541 | 1_3:+16676368 | Msa0106880:CDS |
| TCACTTTATCATACAAAACT+TGG | 0.467338 | 1_3:-16675794 | None:intergenic |
| GAACTTAATCATCGGAGTAT+TGG | 0.474039 | 1_3:+16674891 | Msa0106880:CDS |
| TGTTTCTTGGCAAATTCAAA+TGG | 0.474706 | 1_3:-16676263 | None:intergenic |
| ATTTCGTAATTCCAAGGATG+TGG | 0.486265 | 1_3:+16675611 | Msa0106880:CDS |
| AAATTCTCTCTTTAATGTGA+TGG | 0.506079 | 1_3:+16675366 | Msa0106880:CDS |
| AATATACATTAAGTGGTGGT+TGG | 0.506646 | 1_3:+16676375 | Msa0106880:CDS |
| GCATAGGATGGAAGGAAGAA+AGG | 0.511502 | 1_3:+16676289 | Msa0106880:CDS |
| CTTCAAACAAATCTTCAAGA+AGG | 0.513344 | 1_3:+16674936 | Msa0106880:CDS |
| TAAGTTTCGTGAAAAGGCAT+TGG | 0.531413 | 1_3:+16675176 | Msa0106880:CDS |
| AAACATCTGCATAGGATGGA+AGG | 0.551037 | 1_3:+16676281 | Msa0106880:CDS |
| TTGTTGATCAAGACAAAACA+TGG | 0.551848 | 1_3:+16676321 | Msa0106880:CDS |
| ATACATTAAAAGAGATCTCA+TGG | 0.552062 | 1_3:+16675869 | Msa0106880:CDS |
| GAAACTCTAGAAGACGGTGA+TGG | 0.557191 | 1_3:-16675513 | None:intergenic |
| TGCAAGATTTCGTAATTCCA+AGG | 0.561478 | 1_3:+16675605 | Msa0106880:CDS |
| TTGCCAAGAAACATCTGCAT+AGG | 0.573034 | 1_3:+16676273 | Msa0106880:CDS |
| TTGGAAGCTTTAGAGTAACT+GGG | 0.591654 | 1_3:-16675213 | None:intergenic |
| CTTCTCAAGAACTTAATCAT+CGG | 0.594078 | 1_3:+16674883 | Msa0106880:CDS |
| CAAGAAACATCTGCATAGGA+TGG | 0.605752 | 1_3:+16676277 | Msa0106880:CDS |
| TTCTTAGAAACTCTAGAAGA+CGG | 0.613948 | 1_3:-16675519 | None:intergenic |
| TTCGTGAAAAGGCATTGGCA+AGG | 0.614166 | 1_3:+16675181 | Msa0106880:CDS |
| AATCAATATACATTAAGTGG+TGG | 0.631074 | 1_3:+16676371 | Msa0106880:CDS |
| AATTCCAAGGATGTGGACAA+TGG | 0.641627 | 1_3:+16675618 | Msa0106880:CDS |
| TTATTAAGCATCCTTCATCA+CGG | 0.666639 | 1_3:+16675469 | Msa0106880:CDS |
| AAGCATCCTTCATCACGGCG+AGG | 0.724034 | 1_3:+16675474 | Msa0106880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTATAAAGTTTACTT+AGG | + | chr1_3:16675105-16675124 | Msa0106880:intron | 10.0% |
| !!! | TACTTTATATTTGTTTTTTT+GGG | + | chr1_3:16675717-16675736 | Msa0106880:intron | 10.0% |
| !! | TAAGAAATAATATATTAAAG+TGG | - | chr1_3:16676073-16676092 | None:intergenic | 10.0% |
| !!! | TTATTTTATAAAGTTTACTT+AGG | + | chr1_3:16675105-16675124 | Msa0106880:intron | 10.0% |
| !!! | TACTTTATATTTGTTTTTTT+GGG | + | chr1_3:16675717-16675736 | Msa0106880:intron | 10.0% |
| !! | TAAGAAATAATATATTAAAG+TGG | - | chr1_3:16676073-16676092 | None:intergenic | 10.0% |
| !! | TAAATATGAATTGCAAAATT+AGG | + | chr1_3:16675009-16675028 | Msa0106880:intron | 15.0% |
| !! | ATTAGGACTATAATAAAATA+TGG | + | chr1_3:16675026-16675045 | Msa0106880:intron | 15.0% |
| !!! | CTACTTTATATTTGTTTTTT+TGG | + | chr1_3:16675716-16675735 | Msa0106880:intron | 15.0% |
| !! | CATCTTAGAATAAATAAAAA+AGG | - | chr1_3:16676195-16676214 | None:intergenic | 15.0% |
| !! | AATAATCAATATACATTAAG+TGG | + | chr1_3:16676368-16676387 | Msa0106880:CDS | 15.0% |
| !! | TAAATATGAATTGCAAAATT+AGG | + | chr1_3:16675009-16675028 | Msa0106880:intron | 15.0% |
| !! | ATTAGGACTATAATAAAATA+TGG | + | chr1_3:16675026-16675045 | Msa0106880:intron | 15.0% |
| !!! | CTACTTTATATTTGTTTTTT+TGG | + | chr1_3:16675716-16675735 | Msa0106880:intron | 15.0% |
| !! | CATCTTAGAATAAATAAAAA+AGG | - | chr1_3:16676195-16676214 | None:intergenic | 15.0% |
| !! | AATAATCAATATACATTAAG+TGG | + | chr1_3:16676368-16676387 | Msa0106880:CDS | 15.0% |
| !!! | TTTTTTTGGTCCTATTTTTT+AGG | + | chr1_3:16675688-16675707 | Msa0106880:intron | 20.0% |
| !! | AATATATTAAAGTGGCATTA+TGG | - | chr1_3:16676065-16676084 | None:intergenic | 20.0% |
| !! | AAAACCAATAATCAAAATCA+GGG | + | chr1_3:16676236-16676255 | Msa0106880:intron | 20.0% |
| !! | AAACAAATACCTTCAAAATA+GGG | - | chr1_3:16676524-16676543 | None:intergenic | 20.0% |
| !! | AAAACAAATACCTTCAAAAT+AGG | - | chr1_3:16676525-16676544 | None:intergenic | 20.0% |
| !! | AGATGGAAATAGAAAAATAA+CGG | - | chr1_3:16676558-16676577 | None:intergenic | 20.0% |
| !!! | AATTAAGAGTGTACAATATA+AGG | + | chr1_3:16676751-16676770 | Msa0106880:intron | 20.0% |
| !!! | ATTAAGAGTGTACAATATAA+GGG | + | chr1_3:16676752-16676771 | Msa0106880:intron | 20.0% |
| !! | ACTTTGACATATTCAAAATT+TGG | + | chr1_3:16676982-16677001 | Msa0106880:intron | 20.0% |
| !!! | TTTTTTTGGTCCTATTTTTT+AGG | + | chr1_3:16675688-16675707 | Msa0106880:intron | 20.0% |
| !! | AATATATTAAAGTGGCATTA+TGG | - | chr1_3:16676065-16676084 | None:intergenic | 20.0% |
| !! | AAAACCAATAATCAAAATCA+GGG | + | chr1_3:16676236-16676255 | Msa0106880:intron | 20.0% |
| !! | AAACAAATACCTTCAAAATA+GGG | - | chr1_3:16676524-16676543 | None:intergenic | 20.0% |
| !! | AAAACAAATACCTTCAAAAT+AGG | - | chr1_3:16676525-16676544 | None:intergenic | 20.0% |
| !! | AGATGGAAATAGAAAAATAA+CGG | - | chr1_3:16676558-16676577 | None:intergenic | 20.0% |
| !!! | AATTAAGAGTGTACAATATA+AGG | + | chr1_3:16676751-16676770 | Msa0106880:intron | 20.0% |
| !!! | ATTAAGAGTGTACAATATAA+GGG | + | chr1_3:16676752-16676771 | Msa0106880:intron | 20.0% |
| !! | ACTTTGACATATTCAAAATT+TGG | + | chr1_3:16676982-16677001 | Msa0106880:intron | 20.0% |
| ! | GAAGAATAATCTTGAAAAAG+TGG | - | chr1_3:16674920-16674939 | None:intergenic | 25.0% |
| !!! | GACTGAAAAGAAAGTTTTTT+GGG | + | chr1_3:16675240-16675259 | Msa0106880:CDS | 25.0% |
| ! | AAATTCTCTCTTTAATGTGA+TGG | + | chr1_3:16675366-16675385 | Msa0106880:CDS | 25.0% |
| ! | TCACTTTATCATACAAAACT+TGG | - | chr1_3:16675797-16675816 | None:intergenic | 25.0% |
| !! | CTCTTTTAATGTATGTCATT+TGG | - | chr1_3:16675863-16675882 | None:intergenic | 25.0% |
| ! | ATACATTAAAAGAGATCTCA+TGG | + | chr1_3:16675869-16675888 | Msa0106880:CDS | 25.0% |
| ! | GCATTATGGTATAACTTTAT+TGG | - | chr1_3:16676051-16676070 | None:intergenic | 25.0% |
| ! | GAAAACCAATAATCAAAATC+AGG | + | chr1_3:16676235-16676254 | Msa0106880:intron | 25.0% |
| ! | AATCAATATACATTAAGTGG+TGG | + | chr1_3:16676371-16676390 | Msa0106880:CDS | 25.0% |
| !! | GCACACAATAATTTGAAATT+TGG | + | chr1_3:16676410-16676429 | Msa0106880:CDS | 25.0% |
| !! | TTCCATCTTTTACTTTATTG+TGG | + | chr1_3:16676570-16676589 | Msa0106880:intron | 25.0% |
| ! | TTCCACAATAAAGTAAAAGA+TGG | - | chr1_3:16676575-16676594 | None:intergenic | 25.0% |
| !!! | CTCTCTATTTTTATCTCTTT+TGG | - | chr1_3:16676650-16676669 | None:intergenic | 25.0% |
| ! | TAAGTGATGTGATATGAATA+GGG | + | chr1_3:16676691-16676710 | Msa0106880:intron | 25.0% |
| ! | GATATATTTCCATAAGGAAA+TGG | - | chr1_3:16676937-16676956 | None:intergenic | 25.0% |
| ! | ATGATGTAAAACTACAACTA+TGG | - | chr1_3:16676961-16676980 | None:intergenic | 25.0% |
| ! | GAAGAATAATCTTGAAAAAG+TGG | - | chr1_3:16674920-16674939 | None:intergenic | 25.0% |
| !!! | GACTGAAAAGAAAGTTTTTT+GGG | + | chr1_3:16675240-16675259 | Msa0106880:CDS | 25.0% |
| ! | AAATTCTCTCTTTAATGTGA+TGG | + | chr1_3:16675366-16675385 | Msa0106880:CDS | 25.0% |
| ! | TCACTTTATCATACAAAACT+TGG | - | chr1_3:16675797-16675816 | None:intergenic | 25.0% |
| !! | CTCTTTTAATGTATGTCATT+TGG | - | chr1_3:16675863-16675882 | None:intergenic | 25.0% |
| ! | ATACATTAAAAGAGATCTCA+TGG | + | chr1_3:16675869-16675888 | Msa0106880:CDS | 25.0% |
| ! | GCATTATGGTATAACTTTAT+TGG | - | chr1_3:16676051-16676070 | None:intergenic | 25.0% |
| ! | GAAAACCAATAATCAAAATC+AGG | + | chr1_3:16676235-16676254 | Msa0106880:intron | 25.0% |
| ! | AATCAATATACATTAAGTGG+TGG | + | chr1_3:16676371-16676390 | Msa0106880:CDS | 25.0% |
| !! | GCACACAATAATTTGAAATT+TGG | + | chr1_3:16676410-16676429 | Msa0106880:CDS | 25.0% |
| !! | TTCCATCTTTTACTTTATTG+TGG | + | chr1_3:16676570-16676589 | Msa0106880:intron | 25.0% |
| ! | TTCCACAATAAAGTAAAAGA+TGG | - | chr1_3:16676575-16676594 | None:intergenic | 25.0% |
| !!! | CTCTCTATTTTTATCTCTTT+TGG | - | chr1_3:16676650-16676669 | None:intergenic | 25.0% |
| ! | TAAGTGATGTGATATGAATA+GGG | + | chr1_3:16676691-16676710 | Msa0106880:intron | 25.0% |
| ! | GATATATTTCCATAAGGAAA+TGG | - | chr1_3:16676937-16676956 | None:intergenic | 25.0% |
| ! | ATGATGTAAAACTACAACTA+TGG | - | chr1_3:16676961-16676980 | None:intergenic | 25.0% |
| CTTCTCAAGAACTTAATCAT+CGG | + | chr1_3:16674883-16674902 | Msa0106880:CDS | 30.0% | |
| CTTCAAACAAATCTTCAAGA+AGG | + | chr1_3:16674936-16674955 | Msa0106880:CDS | 30.0% | |
| AAATCTTCAAGAAGGAAAAC+TGG | + | chr1_3:16674944-16674963 | Msa0106880:CDS | 30.0% | |
| !!! | CGACTGAAAAGAAAGTTTTT+TGG | + | chr1_3:16675239-16675258 | Msa0106880:CDS | 30.0% |
| AAACTAGTCATCAAACTGTT+TGG | + | chr1_3:16675266-16675285 | Msa0106880:CDS | 30.0% | |
| TTATTAAGCATCCTTCATCA+CGG | + | chr1_3:16675469-16675488 | Msa0106880:CDS | 30.0% | |
| ! | TTCTTAGAAACTCTAGAAGA+CGG | - | chr1_3:16675522-16675541 | None:intergenic | 30.0% |
| AGTAGCAACACCTAAAAAAT+AGG | - | chr1_3:16675701-16675720 | None:intergenic | 30.0% | |
| GAATTACTCAATTTCTTAGC+AGG | + | chr1_3:16675741-16675760 | Msa0106880:intron | 30.0% | |
| AACTAGTTGTGATGATCTTA+AGG | + | chr1_3:16675764-16675783 | Msa0106880:CDS | 30.0% | |
| GATTAACTGTCATGTACTAA+TGG | + | chr1_3:16676003-16676022 | Msa0106880:intron | 30.0% | |
| ATAGATATACACCTACATGA+TGG | + | chr1_3:16676101-16676120 | Msa0106880:intron | 30.0% | |
| !!! | TATGCCCTGATTTTGATTAT+TGG | - | chr1_3:16676243-16676262 | None:intergenic | 30.0% |
| TGTTTCTTGGCAAATTCAAA+TGG | - | chr1_3:16676266-16676285 | None:intergenic | 30.0% | |
| TTGTTGATCAAGACAAAACA+TGG | + | chr1_3:16676321-16676340 | Msa0106880:CDS | 30.0% | |
| AATATACATTAAGTGGTGGT+TGG | + | chr1_3:16676375-16676394 | Msa0106880:CDS | 30.0% | |
| AATAGCAACTTGGAATGAAA+TGG | - | chr1_3:16676474-16676493 | None:intergenic | 30.0% | |
| ! | TTATCTCTTTTGGTATAGAG+TGG | - | chr1_3:16676640-16676659 | None:intergenic | 30.0% |
| GTAAGTGATGTGATATGAAT+AGG | + | chr1_3:16676690-16676709 | Msa0106880:intron | 30.0% | |
| TAAAACGCTCAATGAATGTA+AGG | + | chr1_3:16676727-16676746 | Msa0106880:intron | 30.0% | |
| !! | TTTGATCGATTTCTAAAGTG+TGG | - | chr1_3:16676816-16676835 | None:intergenic | 30.0% |
| AACAATACTCCATTTCCTTA+TGG | + | chr1_3:16676925-16676944 | Msa0106880:intron | 30.0% | |
| TATGGCGATATATTTCCATA+AGG | - | chr1_3:16676943-16676962 | None:intergenic | 30.0% | |
| CTTCTCAAGAACTTAATCAT+CGG | + | chr1_3:16674883-16674902 | Msa0106880:CDS | 30.0% | |
| CTTCAAACAAATCTTCAAGA+AGG | + | chr1_3:16674936-16674955 | Msa0106880:CDS | 30.0% | |
| AAATCTTCAAGAAGGAAAAC+TGG | + | chr1_3:16674944-16674963 | Msa0106880:CDS | 30.0% | |
| !!! | CGACTGAAAAGAAAGTTTTT+TGG | + | chr1_3:16675239-16675258 | Msa0106880:CDS | 30.0% |
| AAACTAGTCATCAAACTGTT+TGG | + | chr1_3:16675266-16675285 | Msa0106880:CDS | 30.0% | |
| TTATTAAGCATCCTTCATCA+CGG | + | chr1_3:16675469-16675488 | Msa0106880:CDS | 30.0% | |
| ! | TTCTTAGAAACTCTAGAAGA+CGG | - | chr1_3:16675522-16675541 | None:intergenic | 30.0% |
| AGTAGCAACACCTAAAAAAT+AGG | - | chr1_3:16675701-16675720 | None:intergenic | 30.0% | |
| GAATTACTCAATTTCTTAGC+AGG | + | chr1_3:16675741-16675760 | Msa0106880:intron | 30.0% | |
| AACTAGTTGTGATGATCTTA+AGG | + | chr1_3:16675764-16675783 | Msa0106880:CDS | 30.0% | |
| GATTAACTGTCATGTACTAA+TGG | + | chr1_3:16676003-16676022 | Msa0106880:intron | 30.0% | |
| ATAGATATACACCTACATGA+TGG | + | chr1_3:16676101-16676120 | Msa0106880:intron | 30.0% | |
| !!! | TATGCCCTGATTTTGATTAT+TGG | - | chr1_3:16676243-16676262 | None:intergenic | 30.0% |
| TGTTTCTTGGCAAATTCAAA+TGG | - | chr1_3:16676266-16676285 | None:intergenic | 30.0% | |
| TTGTTGATCAAGACAAAACA+TGG | + | chr1_3:16676321-16676340 | Msa0106880:CDS | 30.0% | |
| AATATACATTAAGTGGTGGT+TGG | + | chr1_3:16676375-16676394 | Msa0106880:CDS | 30.0% | |
| AATAGCAACTTGGAATGAAA+TGG | - | chr1_3:16676474-16676493 | None:intergenic | 30.0% | |
| ! | TTATCTCTTTTGGTATAGAG+TGG | - | chr1_3:16676640-16676659 | None:intergenic | 30.0% |
| GTAAGTGATGTGATATGAAT+AGG | + | chr1_3:16676690-16676709 | Msa0106880:intron | 30.0% | |
| TAAAACGCTCAATGAATGTA+AGG | + | chr1_3:16676727-16676746 | Msa0106880:intron | 30.0% | |
| !! | TTTGATCGATTTCTAAAGTG+TGG | - | chr1_3:16676816-16676835 | None:intergenic | 30.0% |
| AACAATACTCCATTTCCTTA+TGG | + | chr1_3:16676925-16676944 | Msa0106880:intron | 30.0% | |
| TATGGCGATATATTTCCATA+AGG | - | chr1_3:16676943-16676962 | None:intergenic | 30.0% | |
| GAACTTAATCATCGGAGTAT+TGG | + | chr1_3:16674891-16674910 | Msa0106880:CDS | 35.0% | |
| ! | TGCCTTTTCACGAAACTTAT+GGG | - | chr1_3:16675175-16675194 | None:intergenic | 35.0% |
| ! | ATGCCTTTTCACGAAACTTA+TGG | - | chr1_3:16675176-16675195 | None:intergenic | 35.0% |
| ! | TAAGTTTCGTGAAAAGGCAT+TGG | + | chr1_3:16675176-16675195 | Msa0106880:CDS | 35.0% |
| !! | TTGGAAGCTTTAGAGTAACT+GGG | - | chr1_3:16675216-16675235 | None:intergenic | 35.0% |
| !! | TTTGGAAGCTTTAGAGTAAC+TGG | - | chr1_3:16675217-16675236 | None:intergenic | 35.0% |
| ! | ACTTTCTTTTCAGTCGTGTT+TGG | - | chr1_3:16675235-16675254 | None:intergenic | 35.0% |
| CTCTTTAATGTGATGGTACT+TGG | + | chr1_3:16675373-16675392 | Msa0106880:intron | 35.0% | |
| ACCTCTTCGTATTCTTCAAA+GGG | - | chr1_3:16675423-16675442 | None:intergenic | 35.0% | |
| AACCTCTTCGTATTCTTCAA+AGG | - | chr1_3:16675424-16675443 | None:intergenic | 35.0% | |
| TGCAAGATTTCGTAATTCCA+AGG | + | chr1_3:16675605-16675624 | Msa0106880:CDS | 35.0% | |
| ATTTCGTAATTCCAAGGATG+TGG | + | chr1_3:16675611-16675630 | Msa0106880:CDS | 35.0% | |
| CATGACAGTTAATCTCGTTA+AGG | - | chr1_3:16675997-16676016 | None:intergenic | 35.0% | |
| !!! | TGCTATTTTCTCTCTGGAAA+AGG | + | chr1_3:16676487-16676506 | Msa0106880:intron | 35.0% |
| !! | ATGAACACTCCCTATTTTGA+AGG | + | chr1_3:16676512-16676531 | Msa0106880:intron | 35.0% |
| CAAAGAATGAGAGTTAGAGA+AGG | + | chr1_3:16676870-16676889 | Msa0106880:intron | 35.0% | |
| AATGAGAGTTAGAGAAGGTT+AGG | + | chr1_3:16676875-16676894 | Msa0106880:intron | 35.0% | |
| GAACTTAATCATCGGAGTAT+TGG | + | chr1_3:16674891-16674910 | Msa0106880:CDS | 35.0% | |
| ! | TGCCTTTTCACGAAACTTAT+GGG | - | chr1_3:16675175-16675194 | None:intergenic | 35.0% |
| ! | ATGCCTTTTCACGAAACTTA+TGG | - | chr1_3:16675176-16675195 | None:intergenic | 35.0% |
| ! | TAAGTTTCGTGAAAAGGCAT+TGG | + | chr1_3:16675176-16675195 | Msa0106880:CDS | 35.0% |
| !! | TTGGAAGCTTTAGAGTAACT+GGG | - | chr1_3:16675216-16675235 | None:intergenic | 35.0% |
| !! | TTTGGAAGCTTTAGAGTAAC+TGG | - | chr1_3:16675217-16675236 | None:intergenic | 35.0% |
| ! | ACTTTCTTTTCAGTCGTGTT+TGG | - | chr1_3:16675235-16675254 | None:intergenic | 35.0% |
| CTCTTTAATGTGATGGTACT+TGG | + | chr1_3:16675373-16675392 | Msa0106880:intron | 35.0% | |
| ACCTCTTCGTATTCTTCAAA+GGG | - | chr1_3:16675423-16675442 | None:intergenic | 35.0% | |
| AACCTCTTCGTATTCTTCAA+AGG | - | chr1_3:16675424-16675443 | None:intergenic | 35.0% | |
| TGCAAGATTTCGTAATTCCA+AGG | + | chr1_3:16675605-16675624 | Msa0106880:CDS | 35.0% | |
| ATTTCGTAATTCCAAGGATG+TGG | + | chr1_3:16675611-16675630 | Msa0106880:CDS | 35.0% | |
| CATGACAGTTAATCTCGTTA+AGG | - | chr1_3:16675997-16676016 | None:intergenic | 35.0% | |
| !!! | TGCTATTTTCTCTCTGGAAA+AGG | + | chr1_3:16676487-16676506 | Msa0106880:intron | 35.0% |
| !! | ATGAACACTCCCTATTTTGA+AGG | + | chr1_3:16676512-16676531 | Msa0106880:intron | 35.0% |
| CAAAGAATGAGAGTTAGAGA+AGG | + | chr1_3:16676870-16676889 | Msa0106880:intron | 35.0% | |
| AATGAGAGTTAGAGAAGGTT+AGG | + | chr1_3:16676875-16676894 | Msa0106880:intron | 35.0% | |
| TTTACGACCTCTTTGAGTGT+AGG | + | chr1_3:16675049-16675068 | Msa0106880:intron | 40.0% | |
| TGCCCATAAGTTTCGTGAAA+AGG | + | chr1_3:16675170-16675189 | Msa0106880:CDS | 40.0% | |
| !!! | CAAACTGTTTGGTTTTGCGA+TGG | + | chr1_3:16675277-16675296 | Msa0106880:CDS | 40.0% |
| ! | ACCCTTTGAAGAATACGAAG+AGG | + | chr1_3:16675419-16675438 | Msa0106880:intron | 40.0% |
| TACGAAATCTTGCATGTGCT+TGG | - | chr1_3:16675599-16675618 | None:intergenic | 40.0% | |
| AATTCCAAGGATGTGGACAA+TGG | + | chr1_3:16675618-16675637 | Msa0106880:CDS | 40.0% | |
| CCAATCACAATCCATCATGT+AGG | - | chr1_3:16676115-16676134 | None:intergenic | 40.0% | |
| !! | CCTACATGATGGATTGTGAT+TGG | + | chr1_3:16676112-16676131 | Msa0106880:intron | 40.0% |
| TTGCCAAGAAACATCTGCAT+AGG | + | chr1_3:16676273-16676292 | Msa0106880:CDS | 40.0% | |
| CATCCTATGCAGATGTTTCT+TGG | - | chr1_3:16676279-16676298 | None:intergenic | 40.0% | |
| CAAGAAACATCTGCATAGGA+TGG | + | chr1_3:16676277-16676296 | Msa0106880:CDS | 40.0% | |
| AAACATCTGCATAGGATGGA+AGG | + | chr1_3:16676281-16676300 | Msa0106880:CDS | 40.0% | |
| CCAGAGAGAAAATAGCAACT+TGG | - | chr1_3:16676484-16676503 | None:intergenic | 40.0% | |
| !!! | CCAAGTTGCTATTTTCTCTC+TGG | + | chr1_3:16676481-16676500 | Msa0106880:intron | 40.0% |
| TTTACGACCTCTTTGAGTGT+AGG | + | chr1_3:16675049-16675068 | Msa0106880:intron | 40.0% | |
| TGCCCATAAGTTTCGTGAAA+AGG | + | chr1_3:16675170-16675189 | Msa0106880:CDS | 40.0% | |
| !!! | CAAACTGTTTGGTTTTGCGA+TGG | + | chr1_3:16675277-16675296 | Msa0106880:CDS | 40.0% |
| ! | ACCCTTTGAAGAATACGAAG+AGG | + | chr1_3:16675419-16675438 | Msa0106880:intron | 40.0% |
| TACGAAATCTTGCATGTGCT+TGG | - | chr1_3:16675599-16675618 | None:intergenic | 40.0% | |
| AATTCCAAGGATGTGGACAA+TGG | + | chr1_3:16675618-16675637 | Msa0106880:CDS | 40.0% | |
| CCAATCACAATCCATCATGT+AGG | - | chr1_3:16676115-16676134 | None:intergenic | 40.0% | |
| !! | CCTACATGATGGATTGTGAT+TGG | + | chr1_3:16676112-16676131 | Msa0106880:intron | 40.0% |
| TTGCCAAGAAACATCTGCAT+AGG | + | chr1_3:16676273-16676292 | Msa0106880:CDS | 40.0% | |
| CATCCTATGCAGATGTTTCT+TGG | - | chr1_3:16676279-16676298 | None:intergenic | 40.0% | |
| CAAGAAACATCTGCATAGGA+TGG | + | chr1_3:16676277-16676296 | Msa0106880:CDS | 40.0% | |
| AAACATCTGCATAGGATGGA+AGG | + | chr1_3:16676281-16676300 | Msa0106880:CDS | 40.0% | |
| CCAGAGAGAAAATAGCAACT+TGG | - | chr1_3:16676484-16676503 | None:intergenic | 40.0% | |
| !!! | CCAAGTTGCTATTTTCTCTC+TGG | + | chr1_3:16676481-16676500 | Msa0106880:intron | 40.0% |
| TCATCGACCTACACTCAAAG+AGG | - | chr1_3:16675059-16675078 | None:intergenic | 45.0% | |
| !! | TTCGTGAAAAGGCATTGGCA+AGG | + | chr1_3:16675181-16675200 | Msa0106880:CDS | 45.0% |
| !!! | CTGTTTGGTTTTGCGATGGT+TGG | + | chr1_3:16675281-16675300 | Msa0106880:CDS | 45.0% |
| GTGATGGTACTTGGCAAATG+CGG | + | chr1_3:16675382-16675401 | Msa0106880:intron | 45.0% | |
| !!! | GAAGACGGTGATGGAGATTT+TGG | - | chr1_3:16675507-16675526 | None:intergenic | 45.0% |
| ! | GAAACTCTAGAAGACGGTGA+TGG | - | chr1_3:16675516-16675535 | None:intergenic | 45.0% |
| GCATAGGATGGAAGGAAGAA+AGG | + | chr1_3:16676289-16676308 | Msa0106880:CDS | 45.0% | |
| TCATCGACCTACACTCAAAG+AGG | - | chr1_3:16675059-16675078 | None:intergenic | 45.0% | |
| !! | TTCGTGAAAAGGCATTGGCA+AGG | + | chr1_3:16675181-16675200 | Msa0106880:CDS | 45.0% |
| !!! | CTGTTTGGTTTTGCGATGGT+TGG | + | chr1_3:16675281-16675300 | Msa0106880:CDS | 45.0% |
| GTGATGGTACTTGGCAAATG+CGG | + | chr1_3:16675382-16675401 | Msa0106880:intron | 45.0% | |
| !!! | GAAGACGGTGATGGAGATTT+TGG | - | chr1_3:16675507-16675526 | None:intergenic | 45.0% |
| ! | GAAACTCTAGAAGACGGTGA+TGG | - | chr1_3:16675516-16675535 | None:intergenic | 45.0% |
| GCATAGGATGGAAGGAAGAA+AGG | + | chr1_3:16676289-16676308 | Msa0106880:CDS | 45.0% | |
| !!! | ATTTATTTTTTCTATTTTTT+TGG | + | chr1_3:16675674-16675693 | Msa0106880:intron | 5.0% |
| !!! | ATTTATTTTTTCTATTTTTT+TGG | + | chr1_3:16675674-16675693 | Msa0106880:intron | 5.0% |
| ! | CTTTTACCTCGCCGTGATGA+AGG | - | chr1_3:16675483-16675502 | None:intergenic | 50.0% |
| CTTCATCACGGCGAGGTAAA+AGG | + | chr1_3:16675481-16675500 | Msa0106880:CDS | 50.0% | |
| CCAACCATTGTCCACATCCT+TGG | - | chr1_3:16675625-16675644 | None:intergenic | 50.0% | |
| CCAAGGATGTGGACAATGGT+TGG | + | chr1_3:16675622-16675641 | Msa0106880:intron | 50.0% | |
| ! | CTTTTACCTCGCCGTGATGA+AGG | - | chr1_3:16675483-16675502 | None:intergenic | 50.0% |
| CTTCATCACGGCGAGGTAAA+AGG | + | chr1_3:16675481-16675500 | Msa0106880:CDS | 50.0% | |
| CCAACCATTGTCCACATCCT+TGG | - | chr1_3:16675625-16675644 | None:intergenic | 50.0% | |
| CCAAGGATGTGGACAATGGT+TGG | + | chr1_3:16675622-16675641 | Msa0106880:intron | 50.0% | |
| AAGCATCCTTCATCACGGCG+AGG | + | chr1_3:16675474-16675493 | Msa0106880:CDS | 55.0% | |
| AAGCATCCTTCATCACGGCG+AGG | + | chr1_3:16675474-16675493 | Msa0106880:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 16674879 | 16677055 | 16674879 | ID=Msa0106880;Name=Msa0106880 |
| chr1_3 | mRNA | 16674879 | 16677055 | 16674879 | ID=Msa0106880-mRNA-1;Parent=Msa0106880;Name=Msa0106880-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|0.83|0.6|0.5|6|0|290 |
| chr1_3 | exon | 16674879 | 16674965 | 16674879 | ID=Msa0106880-mRNA-1:exon:6254;Parent=Msa0106880-mRNA-1 |
| chr1_3 | exon | 16675166 | 16675387 | 16675166 | ID=Msa0106880-mRNA-1:exon:6255;Parent=Msa0106880-mRNA-1 |
| chr1_3 | exon | 16675450 | 16675639 | 16675450 | ID=Msa0106880-mRNA-1:exon:6256;Parent=Msa0106880-mRNA-1 |
| chr1_3 | exon | 16675763 | 16675890 | 16675763 | ID=Msa0106880-mRNA-1:exon:6257;Parent=Msa0106880-mRNA-1 |
| chr1_3 | exon | 16676257 | 16676484 | 16676257 | ID=Msa0106880-mRNA-1:exon:6258;Parent=Msa0106880-mRNA-1 |
| chr1_3 | exon | 16677038 | 16677055 | 16677038 | ID=Msa0106880-mRNA-1:exon:6259;Parent=Msa0106880-mRNA-1 |
| chr1_3 | CDS | 16674879 | 16674965 | 16674879 | ID=Msa0106880-mRNA-1:cds;Parent=Msa0106880-mRNA-1 |
| chr1_3 | CDS | 16675166 | 16675387 | 16675166 | ID=Msa0106880-mRNA-1:cds;Parent=Msa0106880-mRNA-1 |
| chr1_3 | CDS | 16675450 | 16675639 | 16675450 | ID=Msa0106880-mRNA-1:cds;Parent=Msa0106880-mRNA-1 |
| chr1_3 | CDS | 16675763 | 16675890 | 16675763 | ID=Msa0106880-mRNA-1:cds;Parent=Msa0106880-mRNA-1 |
| chr1_3 | CDS | 16676257 | 16676484 | 16676257 | ID=Msa0106880-mRNA-1:cds;Parent=Msa0106880-mRNA-1 |
| chr1_3 | CDS | 16677038 | 16677055 | 16677038 | ID=Msa0106880-mRNA-1:cds;Parent=Msa0106880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
