AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0106890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0106890 MtrunA17_Chr1g0163071 93.377 302 16 1 33 334 1 298 0.0 558
Msa0106890 MtrunA17_Chr1g0208771 46.943 458 215 11 34 479 13 454 8.94e-128 384
Msa0106890 MtrunA17_Chr1g0208771 36.585 123 75 2 476 595 9 131 5.09e-12 68.6
Msa0106890 MtrunA17_Chr8g0390841 41.748 515 236 16 1 478 26 513 4.02e-117 358
Msa0106890 MtrunA17_Chr1g0163081 83.673 147 23 1 475 621 1 146 2.29e-86 265
Msa0106890 MtrunA17_Chr1g0163081 36.283 113 65 4 33 141 5 114 2.47e-11 62.0
Msa0106890 MtrunA17_Chr1g0162161 75.839 149 32 1 477 621 1 149 2.52e-76 240
Msa0106890 MtrunA17_Chr1g0162161 35.714 112 65 4 33 140 3 111 2.64e-11 62.4
Msa0106890 MtrunA17_Chr1g0163101 75.862 145 33 2 479 621 32 176 7.51e-73 232
Msa0106890 MtrunA17_Chr1g0163101 33.333 144 88 4 13 151 12 152 4.94e-15 73.6
Msa0106890 MtrunA17_Chr1g0163121 72.414 145 33 1 477 621 8 145 5.25e-68 218
Msa0106890 MtrunA17_Chr1g0163121 35.652 115 67 4 32 142 9 120 4.13e-12 64.3
Msa0106890 MtrunA17_Chr1g0163131 70.213 141 37 2 479 615 33 172 9.25e-63 210
Msa0106890 MtrunA17_Chr1g0163131 28.349 321 186 11 13 319 13 303 8.13e-22 96.7
Msa0106890 MtrunA17_Chr6g0476181 61.585 164 37 3 479 621 1 159 3.94e-61 200
Msa0106890 MtrunA17_Chr6g0476181 36.752 117 68 4 33 148 1 112 1.04e-11 63.5
Msa0106890 MtrunA17_Chr1g0163161 72.593 135 31 3 492 621 1 134 4.61e-61 199
Msa0106890 MtrunA17_Chr1g0163161 37.255 102 56 3 46 142 1 99 2.95e-11 61.6
Msa0106890 MtrunA17_Chr1g0163141 59.036 166 45 2 479 621 10 175 1.25e-57 192
Msa0106890 MtrunA17_Chr1g0163141 38.542 96 56 2 32 127 9 101 4.47e-13 68.2
Msa0106890 MtrunA17_Chr3g0131891 37.309 327 152 9 13 323 14 303 2.26e-55 191
Msa0106890 MtrunA17_Chr3g0131891 40.367 109 61 3 479 584 34 141 1.93e-12 68.9
Msa0106890 MtrunA17_Chr7g0233541 35.161 310 166 7 33 330 1 287 2.17e-50 176
Msa0106890 MtrunA17_Chr7g0233541 43.182 88 47 2 479 563 1 88 3.13e-11 64.7
Msa0106890 MtrunA17_Chr7g0233561 32.827 329 168 6 16 323 16 312 1.54e-49 175
Msa0106890 MtrunA17_Chr7g0233561 41.053 95 53 2 480 571 34 128 2.32e-11 65.5
Msa0106890 MtrunA17_Chr7g0233521 36.246 309 147 10 33 330 1 270 1.20e-47 168
Msa0106890 MtrunA17_Chr7g0233521 35.878 131 67 5 479 593 1 130 1.86e-11 65.1
Msa0106890 MtrunA17_Chr3g0103181 32.390 318 164 8 12 322 6 279 1.74e-44 160
Msa0106890 MtrunA17_Chr3g0103181 27.273 275 159 9 235 479 13 276 1.35e-18 86.7
Msa0106890 MtrunA17_Chr7g0233531 32.362 309 159 7 33 330 1 270 2.01e-43 157
Msa0106890 MtrunA17_Chr7g0233531 40.625 96 54 2 479 571 1 96 4.63e-11 63.9
Msa0106890 MtrunA17_Chr4g0033961 28.856 402 203 12 18 338 6 405 5.98e-41 154
Msa0106890 MtrunA17_Chr3g0103191 35.688 269 134 9 12 280 6 235 2.20e-40 147
Msa0106890 MtrunA17_Chr3g0103191 36.220 127 73 3 467 590 13 134 1.19e-13 71.2
Msa0106890 MtrunA17_Chr4g0067431 31.118 331 196 11 13 331 10 320 8.24e-38 142
Msa0106890 MtrunA17_Chr4g0067431 37.324 142 73 6 480 612 31 165 3.90e-18 85.9
Msa0106890 MtrunA17_Chr1g0163181 27.974 454 269 15 26 470 13 417 2.31e-37 144
Msa0106890 MtrunA17_Chr1g0163181 37.013 154 79 5 480 615 21 174 1.48e-22 100
Msa0106890 MtrunA17_Chr3g0103171 28.956 297 166 7 34 322 6 265 1.82e-35 134
Msa0106890 MtrunA17_Chr3g0103171 25.869 259 160 7 251 479 6 262 2.07e-16 79.7
Msa0106890 MtrunA17_Chr3g0103171 38.000 100 59 2 475 571 1 100 2.24e-14 73.6
Msa0106890 MtrunA17_Chr3g0103151 41.830 153 85 3 16 168 10 158 1.12e-32 123
Msa0106890 MtrunA17_Chr3g0103151 35.938 128 72 4 467 590 13 134 9.03e-15 72.4
Msa0106890 MtrunA17_Chr7g0233571 32.599 227 132 4 18 244 10 215 8.52e-32 122
Msa0106890 MtrunA17_Chr7g0233571 44.792 96 50 2 479 571 25 120 1.30e-14 73.6
Msa0106890 MtrunA17_Chr1g0163221 30.462 325 189 9 13 331 6 299 2.88e-30 122
Msa0106890 MtrunA17_Chr1g0163261 25.857 321 193 6 17 330 8 290 1.40e-26 110
Msa0106890 MtrunA17_Chr1g0163261 44.706 85 46 1 480 563 25 109 1.49e-17 84.0
Msa0106890 MtrunA17_Chr1g0163251 26.829 328 190 9 26 340 13 303 1.21e-25 109
Msa0106890 MtrunA17_Chr1g0163251 52.809 89 41 1 480 567 21 109 2.36e-23 102
Msa0106890 MtrunA17_Chr3g0103201 29.921 254 134 8 76 322 4 220 4.20e-25 103
Msa0106890 MtrunA17_Chr3g0103201 30.137 219 120 8 289 479 4 217 7.67e-14 71.2
Msa0106890 MtrunA17_Chr5g0419201 33.962 159 89 3 18 168 16 166 6.47e-25 102
Msa0106890 MtrunA17_Chr5g0419201 34.307 137 76 5 465 590 15 148 7.80e-16 76.3
Msa0106890 MtrunA17_Chr1g0154041 25.705 319 206 6 32 319 29 347 7.49e-25 109
Msa0106890 MtrunA17_Chr1g0163231 40.876 137 74 2 480 615 25 155 3.49e-23 100
Msa0106890 MtrunA17_Chr1g0163231 23.175 315 185 10 18 321 9 277 4.51e-19 88.2
Msa0106890 MtrunA17_Chr3g0077411 22.119 538 313 14 18 489 25 522 7.45e-23 102
Msa0106890 MtrunA17_Chr3g0077411 25.697 323 160 8 15 322 259 516 4.09e-22 100
Msa0106890 MtrunA17_Chr5g0429931 27.000 300 141 9 34 323 11 242 3.77e-22 96.3
Msa0106890 MtrunA17_Chr1g0163241 46.237 93 49 1 476 567 19 111 4.30e-22 93.6
Msa0106890 MtrunA17_Chr1g0163241 40.964 83 47 1 34 116 23 103 3.55e-14 70.9
Msa0106890 MtrunA17_Chr1g0163201 25.329 304 186 7 34 328 19 290 5.21e-21 95.9
Msa0106890 MtrunA17_Chr1g0163201 44.944 89 48 1 480 567 19 107 1.04e-18 89.0
Msa0106890 MtrunA17_Chr6g0467351 32.911 158 92 3 16 172 13 157 7.73e-21 92.0
Msa0106890 MtrunA17_Chr6g0467351 42.857 84 44 3 480 559 31 114 1.04e-13 71.2
Msa0106890 MtrunA17_Chr3g0077451 27.458 295 147 7 32 326 10 237 8.17e-21 92.0
Msa0106890 MtrunA17_Chr1g0171611 38.686 137 64 4 480 615 25 142 1.06e-20 92.8
Msa0106890 MtrunA17_Chr1g0171611 34.343 99 63 1 18 116 9 105 2.43e-14 73.9
Msa0106890 MtrunA17_Chr1g0163191 42.718 103 56 2 480 581 21 121 3.74e-20 87.8
Msa0106890 MtrunA17_Chr1g0163191 41.758 91 51 1 26 116 13 101 2.32e-17 79.7
Msa0106890 MtrunA17_Chr1g0162441 34.532 139 78 2 18 146 7 142 3.23e-19 90.5
Msa0106890 MtrunA17_Chr1g0162441 27.660 188 118 5 165 334 222 409 6.25e-17 83.6
Msa0106890 MtrunA17_Chr3g0077461 26.510 298 130 9 21 311 241 456 2.57e-18 88.2
Msa0106890 MtrunA17_Chr3g0077461 22.587 487 287 18 34 477 23 462 2.21e-15 79.0
Msa0106890 MtrunA17_Chr3g0103161 39.669 121 68 3 362 479 2 120 7.16e-18 80.1
Msa0106890 MtrunA17_Chr1g0154071 25.079 315 210 7 32 320 169 483 4.50e-17 84.3
Msa0106890 MtrunA17_Chr1g0154161 25.157 318 188 12 16 322 28 306 4.21e-16 79.7
Msa0106890 MtrunA17_Chr1g0162411 30.657 137 84 2 18 146 7 140 8.30e-15 77.0
Msa0106890 MtrunA17_Chr1g0163061 36.449 107 61 2 16 118 13 116 1.11e-14 74.7
Msa0106890 MtrunA17_Chr1g0163061 42.857 84 44 2 480 559 31 114 2.12e-12 67.8
Msa0106890 MtrunA17_Chr3g0077381 22.864 398 241 12 32 390 34 404 2.14e-14 75.9
Msa0106890 MtrunA17_Chr1g0154171 20.645 310 222 5 31 319 35 341 7.76e-14 73.6
Msa0106890 MtrunA17_Chr4g0009491 36.782 87 55 0 32 118 11 97 4.58e-13 71.6
Msa0106890 MtrunA17_Chr4g0009491 29.139 151 78 3 21 171 229 350 1.52e-11 67.0
Msa0106890 MtrunA17_Chr1g0154151 23.077 299 212 9 34 321 20 311 1.39e-12 69.3
Msa0106890 MtrunA17_Chr1g0163091 31.481 108 66 3 229 328 17 124 1.31e-11 63.5
Msa0106890 MtrunA17_Chr1g0154111 26.842 190 121 6 374 545 248 437 3.00e-11 66.2
Msa0106890 MtrunA17_Chr3g0077361 29.752 121 81 2 18 137 40 157 8.58e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0106890 AT3G18990.1 27.429 350 197 10 18 326 6 339 6.70e-35 135
Msa0106890 AT3G18990.1 23.494 332 166 12 233 479 4 332 6.47e-13 70.9
Msa0106890 AT3G18990.2 27.011 348 201 9 18 326 6 339 3.05e-34 134
Msa0106890 AT3G18990.2 23.494 332 166 12 233 479 4 332 8.79e-13 70.9
Msa0106890 AT4G01580.1 33.571 140 84 2 17 154 29 161 6.01e-18 82.8
Msa0106890 AT3G18960.2 36.275 102 65 0 17 118 29 130 1.60e-17 81.6
Msa0106890 AT3G18960.1 36.275 102 65 0 17 118 29 130 2.35e-17 81.6
Msa0106890 AT4G33280.1 24.839 310 204 10 31 330 36 326 7.32e-15 76.6
Msa0106890 AT1G49480.3 30.405 148 95 5 186 326 78 224 8.56e-15 74.7
Msa0106890 AT1G49480.3 34.906 106 64 3 376 479 115 217 5.80e-13 69.3
Msa0106890 AT1G49480.1 30.405 148 95 5 186 326 78 224 8.56e-15 74.7
Msa0106890 AT1G49480.1 34.906 106 64 3 376 479 115 217 5.80e-13 69.3
Msa0106890 AT1G49480.2 30.405 148 95 5 186 326 78 224 8.56e-15 74.7
Msa0106890 AT1G49480.2 34.906 106 64 3 376 479 115 217 5.80e-13 69.3
Msa0106890 AT1G49475.1 33.333 135 79 4 17 142 33 165 1.71e-14 72.8
Msa0106890 AT3G18960.3 40.000 85 51 0 34 118 9 93 1.71e-14 72.4

Find 100 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACCTGATTTGGAAGTTTA+AGG 0.096268 1_3:-16691532 None:intergenic
GTAGAGGTTGGAAGCTATTT+TGG 0.155141 1_3:+16690100 Msa0106890:CDS
TGAGGACTCCATTGAAATTT+TGG 0.168496 1_3:+16688593 Msa0106890:CDS
TACAACGAGGTTATGATATT+TGG 0.177643 1_3:+16691573 Msa0106890:CDS
AATCAAATAATCCTTCTTTC+AGG 0.198997 1_3:+16688976 Msa0106890:CDS
GGACACATAATTGGTGATTT+TGG 0.244060 1_3:-16688648 None:intergenic
TGTATTAGATGATAGTAAAT+TGG 0.248691 1_3:+16691685 Msa0106890:CDS
TAATTTGTAATGAAGGAATT+TGG 0.257343 1_3:-16689979 None:intergenic
CATGATGCTTAGGCAAGTTT+TGG 0.267797 1_3:-16688731 None:intergenic
CAAAGTAAGGTATTGGCTTT+TGG 0.269874 1_3:-16689320 None:intergenic
GTACACAACAAGTTGAAAAT+TGG 0.270510 1_3:+16689274 Msa0106890:CDS
GAATAACAATGCAACTTTAC+AGG 0.277076 1_3:-16690054 None:intergenic
AACTCTTGGATGGAAGAGTT+TGG 0.284086 1_3:+16689200 Msa0106890:CDS
TTTGGAAGTTTAAGGGATAT+TGG 0.287162 1_3:-16691524 None:intergenic
CAGATGGTGATGTTAAAGTT+TGG 0.294860 1_3:+16690018 Msa0106890:CDS
CTAGAATGCCCTCGTTGATT+TGG 0.297882 1_3:-16689825 None:intergenic
AGGTTGAGTGCAAAATGTTT+TGG 0.311705 1_3:+16691549 Msa0106890:CDS
AGCTTTCCATCTTGAAGAAT+TGG 0.312657 1_3:-16687715 None:intergenic
AACAACAATGACTAGCAATA+AGG 0.315318 1_3:+16687636 None:intergenic
ATAAATATGTGAAGACTTCA+TGG 0.326594 1_3:-16689003 None:intergenic
ATGATATTTGGCTAGTGAAT+TGG 0.327057 1_3:+16691585 Msa0106890:CDS
ATCCCTTAAACTTCCAAATC+AGG 0.338377 1_3:+16691529 Msa0106890:CDS
TGGGATGCTAAATATTGTTC+TGG 0.351348 1_3:+16689220 Msa0106890:CDS
TGTGGTTGAGGACACATAAT+TGG 0.354680 1_3:-16688657 None:intergenic
TGACATTCTTCTTCAACTCT+TGG 0.360124 1_3:+16689186 Msa0106890:CDS
TTACTTTCAAAGTAAGGTAT+TGG 0.362100 1_3:-16689327 None:intergenic
AACCTGATTTGGAAGTTTAA+GGG 0.367656 1_3:-16691531 None:intergenic
AGATGGTGATGTTAAAGTTT+GGG 0.372056 1_3:+16690019 Msa0106890:CDS
TACACAACAAGTTGAAAATT+GGG 0.372067 1_3:+16689275 Msa0106890:CDS
GAAACTATTATAACAAATAA+AGG 0.373977 1_3:+16689524 Msa0106890:CDS
TGGTCCTTAGTGAAACCTTT+TGG 0.375145 1_3:-16688294 None:intergenic
CTCAATTTCTTATGTGGTTG+AGG 0.376046 1_3:-16688669 None:intergenic
ACTCTTGGATGGAAGAGTTT+GGG 0.379451 1_3:+16689201 Msa0106890:CDS
TGTTATTCCAACATGAAATC+AGG 0.384360 1_3:+16690069 Msa0106890:CDS
TATCTTTCTACAAAATTCCT+TGG 0.385312 1_3:-16691482 None:intergenic
TTCCTTCATTACAAATTACT+TGG 0.385639 1_3:+16689984 Msa0106890:CDS
ATCCAAGTAATTTGTAATGA+AGG 0.391002 1_3:-16689986 None:intergenic
GATTTGACATGTCATTCATA+TGG 0.392626 1_3:-16688314 None:intergenic
ATATTATTACTTTCAAAGTA+AGG 0.401134 1_3:-16689333 None:intergenic
TTCAATCTCAAGGGTACTCT+TGG 0.401861 1_3:-16688514 None:intergenic
TATTTAACTGCTCCTGCTCT+TGG 0.409863 1_3:-16688938 None:intergenic
GCTTCCAACCTCTACAAAAC+TGG 0.416735 1_3:-16690092 None:intergenic
TCACTTCTCAATTTCTTATG+TGG 0.420211 1_3:-16688675 None:intergenic
TGACTTGTCCAAAATTTCAA+TGG 0.423265 1_3:-16688601 None:intergenic
TCAAAGAGACAAAGACTTCT+CGG 0.423887 1_3:+16689490 Msa0106890:CDS
ACAACAATGACTAGCAATAA+GGG 0.438593 1_3:+16687637 None:intergenic
TGAGTACGACTAAAATCAAT+GGG 0.448181 1_3:+16688376 Msa0106890:CDS
ACATATTTATAGTCATTCCT+TGG 0.460818 1_3:+16689016 Msa0106890:CDS
CAAGAATTATACCACTAGAT+TGG 0.461063 1_3:-16688755 None:intergenic
ACACATTATTCACTAGATCA+TGG 0.461106 1_3:+16688435 Msa0106890:CDS
TGGAGTTGAATTTATCAGCT+TGG 0.461811 1_3:-16689773 None:intergenic
TCAACGAGGGCATTCTAGAT+TGG 0.465952 1_3:+16689830 Msa0106890:CDS
ATGAGTACGACTAAAATCAA+TGG 0.474758 1_3:+16688375 Msa0106890:CDS
CCTTGAGGTGGAGGGGTGTG+TGG 0.491665 1_3:-16689373 None:intergenic
TGGGAAGAAAATAAATTGAA+AGG 0.492702 1_3:+16690120 Msa0106890:CDS
ACCACACCAATTCTTCAAGA+TGG 0.495178 1_3:+16687709 Msa0106890:CDS
AAAGATTTGCACGATCGCTT+AGG 0.496687 1_3:+16691609 Msa0106890:CDS
AGTAATAATATTTAGACTTG+AGG 0.498996 1_3:+16689345 Msa0106890:CDS
TAAAGTTTGGGAAGAAATTG+TGG 0.501503 1_3:+16690031 Msa0106890:CDS
ATTCTTCTTCAACTCTTGGA+TGG 0.502926 1_3:+16689190 Msa0106890:CDS
GGAAAGGATATTCAATCTCA+AGG 0.515164 1_3:-16688524 None:intergenic
CTAGATTGGACATGATGCTT+AGG 0.523842 1_3:-16688741 None:intergenic
TCTGGAGTCTTGAGAAACAT+TGG 0.528591 1_3:-16688336 None:intergenic
GTTGGATTACCTTGAGGTGG+AGG 0.530634 1_3:-16689382 None:intergenic
CACATTATTCACTAGATCAT+GGG 0.539236 1_3:+16688436 Msa0106890:CDS
TTGGATTACCTTGAGGTGGA+GGG 0.543725 1_3:-16689381 None:intergenic
TTCATGGTAATCCTGAAAGA+AGG 0.545664 1_3:-16688987 None:intergenic
TTGTCAATGTTTGTCCCTTG+AGG 0.547113 1_3:-16691821 None:intergenic
TGTGTTTGCAGATGATTCCA+AGG 0.559130 1_3:+16691465 Msa0106890:intron
TCGCGTTATGACAGGAGAGA+AGG 0.560064 1_3:+16689692 Msa0106890:intron
GCGTTGTAGATGATACCAAA+AGG 0.565115 1_3:+16688279 Msa0106890:intron
CTTGGATAACAAGGAACAGA+TGG 0.569177 1_3:+16690002 Msa0106890:CDS
ACGAATAGTAGAAGCAGAGA+GGG 0.570331 1_3:-16687671 None:intergenic
AAACTGGCCTGATTTCATGT+TGG 0.576131 1_3:-16690076 None:intergenic
TACAAATTACTTGGATAACA+AGG 0.576875 1_3:+16689993 Msa0106890:CDS
TGATTGTTAGCAAATTGTGA+TGG 0.578116 1_3:-16689145 None:intergenic
CAAGTTGGATTACCTTGAGG+TGG 0.583413 1_3:-16689385 None:intergenic
GAAGAAAATAAATTGAAAGG+TGG 0.594266 1_3:+16690123 Msa0106890:CDS
GATTGTTAGCAAATTGTGAT+GGG 0.597689 1_3:-16689144 None:intergenic
GAAAGGATATTCAATCTCAA+GGG 0.599161 1_3:-16688523 None:intergenic
GATACCAAAAGGTTTCACTA+AGG 0.601016 1_3:+16688290 Msa0106890:CDS
ATGTTTCTCAAGACTCCAGA+TGG 0.601949 1_3:+16688339 Msa0106890:CDS
AGTGACTCAAGTGAAGGTGT+TGG 0.603054 1_3:+16688693 Msa0106890:CDS
TCCATCTTGAAGAATTGGTG+TGG 0.604101 1_3:-16687710 None:intergenic
CCACACACCCCTCCACCTCA+AGG 0.604249 1_3:+16689373 Msa0106890:CDS
TTGAGAAGTGACTCAAGTGA+AGG 0.604348 1_3:+16688687 Msa0106890:CDS
TGTCTTTGAGCTTATCAAGA+GGG 0.608394 1_3:+16690155 Msa0106890:CDS
TTTGCACGATCGCTTAGGTG+TGG 0.611771 1_3:+16691614 Msa0106890:CDS
AGTGATATTTCTACACCTCA+AGG 0.612548 1_3:+16691806 Msa0106890:CDS
TTCACTAGATCATGGGCACA+TGG 0.616979 1_3:+16688443 Msa0106890:CDS
TGGATTACCTTGAGGTGGAG+GGG 0.627349 1_3:-16689380 None:intergenic
ACACAACAAGTTGAAAATTG+GGG 0.637450 1_3:+16689276 Msa0106890:CDS
AAGCATCATGTCCAATCTAG+TGG 0.644078 1_3:+16688744 Msa0106890:CDS
GTGATATTTCTACACCTCAA+GGG 0.650521 1_3:+16691807 Msa0106890:CDS
AACGAATAGTAGAAGCAGAG+AGG 0.651419 1_3:-16687672 None:intergenic
TGATCAACAAAGTAGTGATG+AGG 0.654895 1_3:+16688575 Msa0106890:CDS
GTGTCTTTGAGCTTATCAAG+AGG 0.662665 1_3:+16690154 Msa0106890:CDS
AATATTATGCCAAATCAACG+AGG 0.719522 1_3:+16689816 Msa0106890:CDS
ATATTATGCCAAATCAACGA+GGG 0.724045 1_3:+16689817 Msa0106890:CDS
GAGTACGACTAAAATCAATG+GGG 0.780347 1_3:+16688377 Msa0106890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAAAAACATAATATGA+AGG - chr1_3:16687763-16687782 None:intergenic 10.0%
!!! TTATCTTTTAATTTATCCAA+TGG + chr1_3:16688792-16688811 Msa0106890:intron 15.0%
!! ATATTATTACTTTCAAAGTA+AGG - chr1_3:16689336-16689355 None:intergenic 15.0%
!!! ATTATTTTGAAGATAAAACA+AGG - chr1_3:16689441-16689460 None:intergenic 15.0%
!!! TTGTTTTATCTTCAAAATAA+TGG + chr1_3:16689440-16689459 Msa0106890:intron 15.0%
!! GAAACTATTATAACAAATAA+AGG + chr1_3:16689524-16689543 Msa0106890:CDS 15.0%
!!! TTTTCTTTCAAATTGTAAAA+TGG - chr1_3:16690407-16690426 None:intergenic 15.0%
!! TTATTTGATGAAATTTATGT+GGG - chr1_3:16690561-16690580 None:intergenic 15.0%
!! TTTATTTGATGAAATTTATG+TGG - chr1_3:16690562-16690581 None:intergenic 15.0%
!!! ACTTTTTGTTTATACATATA+AGG + chr1_3:16690810-16690829 Msa0106890:intron 15.0%
!!! CTTTTTGTTTATACATATAA+GGG + chr1_3:16690811-16690830 Msa0106890:intron 15.0%
!! TAGTAAAGAAATAAATGAAA+TGG - chr1_3:16691182-16691201 None:intergenic 15.0%
!! TTCAACAATAAAATAAAACA+AGG - chr1_3:16691304-16691323 None:intergenic 15.0%
!!! TTTTTCAAGTGTAAAAAATT+TGG - chr1_3:16691366-16691385 None:intergenic 15.0%
!!! CTTTTAGTTTTTCAATATAA+AGG + chr1_3:16691641-16691660 Msa0106890:CDS 15.0%
!! TTTATATGTATGCTAACATA+AGG + chr1_3:16688248-16688267 Msa0106890:intron 20.0%
!!! TATTGTTCTGGAAAAATTAA+AGG + chr1_3:16689232-16689251 Msa0106890:CDS 20.0%
!! AGTAATAATATTTAGACTTG+AGG + chr1_3:16689345-16689364 Msa0106890:CDS 20.0%
!! AAGATAAAACAAGGTAATAA+AGG - chr1_3:16689432-16689451 None:intergenic 20.0%
!! ATAATATTGACCTTGAAAAA+TGG - chr1_3:16689804-16689823 None:intergenic 20.0%
!!! TAATTTGTAATGAAGGAATT+TGG - chr1_3:16689982-16690001 None:intergenic 20.0%
!!! TATAACACTTGCTTTTTTAT+TGG + chr1_3:16690480-16690499 Msa0106890:intron 20.0%
!! TTATATGTGAAAATGACATT+TGG - chr1_3:16690650-16690669 None:intergenic 20.0%
!! TGGTATATGGATATAAATAA+TGG - chr1_3:16690866-16690885 None:intergenic 20.0%
!!! TTAGTTTTTCAATATAAAGG+AGG + chr1_3:16691644-16691663 Msa0106890:CDS 20.0%
!!! TAGTTTTTCAATATAAAGGA+GGG + chr1_3:16691645-16691664 Msa0106890:CDS 20.0%
!! TGTATTAGATGATAGTAAAT+TGG + chr1_3:16691685-16691704 Msa0106890:CDS 20.0%
!!! TTTAATTTGTTCTGCACATT+TGG + chr1_3:16687776-16687795 Msa0106890:intron 25.0%
!! TTTGAATTTTCACTTCATGA+TGG + chr1_3:16687807-16687826 Msa0106890:intron 25.0%
!!! TCTCTCTAAAAGTTTTAACT+TGG + chr1_3:16687886-16687905 Msa0106890:intron 25.0%
!!! CTCTCTAAAAGTTTTAACTT+GGG + chr1_3:16687887-16687906 Msa0106890:intron 25.0%
!!! TCTCTAAAAGTTTTAACTTG+GGG + chr1_3:16687888-16687907 Msa0106890:intron 25.0%
! ATAGACAAAAATTAACCCTT+CGG + chr1_3:16687921-16687940 Msa0106890:intron 25.0%
!! TATATTTTCAACCCTAAAGA+TGG + chr1_3:16687958-16687977 Msa0106890:intron 25.0%
!! ATATTTTCAACCCTAAAGAT+GGG + chr1_3:16687959-16687978 Msa0106890:intron 25.0%
! TTTATTTGTAGATGACGAAA+CGG - chr1_3:16687994-16688013 None:intergenic 25.0%
! CATTTGAACAATTTCTCTTA+TGG + chr1_3:16688018-16688037 Msa0106890:intron 25.0%
!!! TTTGTTCATGTTGATTTTCA+TGG - chr1_3:16688548-16688567 None:intergenic 25.0%
! AATCAAATAATCCTTCTTTC+AGG + chr1_3:16688976-16688995 Msa0106890:CDS 25.0%
! ATAAATATGTGAAGACTTCA+TGG - chr1_3:16689006-16689025 None:intergenic 25.0%
! ACATATTTATAGTCATTCCT+TGG + chr1_3:16689016-16689035 Msa0106890:CDS 25.0%
! AAAGTTCAATGCATATACTT+TGG - chr1_3:16689090-16689109 None:intergenic 25.0%
!! TACACAACAAGTTGAAAATT+GGG + chr1_3:16689275-16689294 Msa0106890:CDS 25.0%
! TTACTTTCAAAGTAAGGTAT+TGG - chr1_3:16689330-16689349 None:intergenic 25.0%
!!! AATCCAACTTGTTTTTTCTT+TGG + chr1_3:16689397-16689416 Msa0106890:intron 25.0%
!! TCAGTCAAGTAACATTTTAA+CGG - chr1_3:16689948-16689967 None:intergenic 25.0%
! TTCCTTCATTACAAATTACT+TGG + chr1_3:16689984-16690003 Msa0106890:CDS 25.0%
!! ATCCAAGTAATTTGTAATGA+AGG - chr1_3:16689989-16690008 None:intergenic 25.0%
! TACAAATTACTTGGATAACA+AGG + chr1_3:16689993-16690012 Msa0106890:CDS 25.0%
! TGGGAAGAAAATAAATTGAA+AGG + chr1_3:16690120-16690139 Msa0106890:CDS 25.0%
! GAAGAAAATAAATTGAAAGG+TGG + chr1_3:16690123-16690142 Msa0106890:CDS 25.0%
!! CTTAATGTTCATATTTTCAG+AGG + chr1_3:16690189-16690208 Msa0106890:intron 25.0%
!!! GTCATTTTCACATATAAGAT+CGG + chr1_3:16690653-16690672 Msa0106890:intron 25.0%
!! TCATTTTCACATATAAGATC+GGG + chr1_3:16690654-16690673 Msa0106890:intron 25.0%
! CTAACTCAATGTTACAAAAT+CGG - chr1_3:16690934-16690953 None:intergenic 25.0%
!!! GATGCTTTAGAAAAGATTAA+TGG - chr1_3:16691148-16691167 None:intergenic 25.0%
! AAAAATCAAACCATGAATGA+AGG - chr1_3:16691221-16691240 None:intergenic 25.0%
! TATCTTTCTACAAAATTCCT+TGG - chr1_3:16691485-16691504 None:intergenic 25.0%
!! GGAATTTTGTAGAAAGATAT+TGG + chr1_3:16691486-16691505 Msa0106890:CDS 25.0%
AAAAATTAACCCTTCGGAAA+TGG + chr1_3:16687927-16687946 Msa0106890:intron 30.0%
AAAATTAACCCTTCGGAAAT+GGG + chr1_3:16687928-16687947 Msa0106890:intron 30.0%
TTATTTGTAGATGACGAAAC+GGG - chr1_3:16687993-16688012 None:intergenic 30.0%
GTCATGTTAACAAATGTTCT+TGG + chr1_3:16688040-16688059 Msa0106890:intron 30.0%
ATGTTAACAAATGTTCTTGG+AGG + chr1_3:16688043-16688062 Msa0106890:intron 30.0%
GATTTGACATGTCATTCATA+TGG - chr1_3:16688317-16688336 None:intergenic 30.0%
ATGAGTACGACTAAAATCAA+TGG + chr1_3:16688375-16688394 Msa0106890:CDS 30.0%
TGAGTACGACTAAAATCAAT+GGG + chr1_3:16688376-16688395 Msa0106890:CDS 30.0%
! CTAAAATCAATGGGGATTTT+TGG + chr1_3:16688385-16688404 Msa0106890:CDS 30.0%
!!! ATTTTTGGTTTCAAAAGGGT+TGG + chr1_3:16688400-16688419 Msa0106890:CDS 30.0%
ACACATTATTCACTAGATCA+TGG + chr1_3:16688435-16688454 Msa0106890:CDS 30.0%
CACATTATTCACTAGATCAT+GGG + chr1_3:16688436-16688455 Msa0106890:CDS 30.0%
! TGAAGAAAACTCTCATTTTG+TGG + chr1_3:16688479-16688498 Msa0106890:CDS 30.0%
GAAAGGATATTCAATCTCAA+GGG - chr1_3:16688526-16688545 None:intergenic 30.0%
!!! TCATGTTGATTTTCATGGAA+AGG - chr1_3:16688543-16688562 None:intergenic 30.0%
! TGACTTGTCCAAAATTTCAA+TGG - chr1_3:16688604-16688623 None:intergenic 30.0%
TCACTTCTCAATTTCTTATG+TGG - chr1_3:16688678-16688697 None:intergenic 30.0%
CAAGAATTATACCACTAGAT+TGG - chr1_3:16688758-16688777 None:intergenic 30.0%
! TATGTTGTTCATTTTCCTAG+AGG + chr1_3:16688845-16688864 Msa0106890:intron 30.0%
AATTAATCAAAGACTCACCA+AGG - chr1_3:16689036-16689055 None:intergenic 30.0%
GATTGTTAGCAAATTGTGAT+GGG - chr1_3:16689147-16689166 None:intergenic 30.0%
TGATTGTTAGCAAATTGTGA+TGG - chr1_3:16689148-16689167 None:intergenic 30.0%
!! TGTTCTGGAAAAATTAAAGG+TGG + chr1_3:16689235-16689254 Msa0106890:CDS 30.0%
! GTACACAACAAGTTGAAAAT+TGG + chr1_3:16689274-16689293 Msa0106890:CDS 30.0%
! ACACAACAAGTTGAAAATTG+GGG + chr1_3:16689276-16689295 Msa0106890:CDS 30.0%
CTTCCAAAGAAAAAACAAGT+TGG - chr1_3:16689403-16689422 None:intergenic 30.0%
! CTCTTTGAACTGATTCTAAA+GGG - chr1_3:16689478-16689497 None:intergenic 30.0%
! TCTCTTTGAACTGATTCTAA+AGG - chr1_3:16689479-16689498 None:intergenic 30.0%
! ATTCCTCAAAATTTGTTTGC+GGG - chr1_3:16689646-16689665 None:intergenic 30.0%
! GATTCCTCAAAATTTGTTTG+CGG - chr1_3:16689647-16689666 None:intergenic 30.0%
!! CTCCAAATATCCATTTTTCA+AGG + chr1_3:16689791-16689810 Msa0106890:CDS 30.0%
GACCTTGAAAAATGGATATT+TGG - chr1_3:16689796-16689815 None:intergenic 30.0%
AATATTATGCCAAATCAACG+AGG + chr1_3:16689816-16689835 Msa0106890:CDS 30.0%
ATATTATGCCAAATCAACGA+GGG + chr1_3:16689817-16689836 Msa0106890:CDS 30.0%
!! GAAAGTATAACAGCACTTTT+TGG - chr1_3:16689913-16689932 None:intergenic 30.0%
! AGATGGTGATGTTAAAGTTT+GGG + chr1_3:16690019-16690038 Msa0106890:CDS 30.0%
TAAAGTTTGGGAAGAAATTG+TGG + chr1_3:16690031-16690050 Msa0106890:CDS 30.0%
GAATAACAATGCAACTTTAC+AGG - chr1_3:16690057-16690076 None:intergenic 30.0%
TGTTATTCCAACATGAAATC+AGG + chr1_3:16690069-16690088 Msa0106890:CDS 30.0%
GTAGTACAGCACAATTATTA+TGG - chr1_3:16690240-16690259 None:intergenic 30.0%
! AAGTGTTATAGAGTGTCAAA+AGG - chr1_3:16690470-16690489 None:intergenic 30.0%
TTTATTGGATGAAACTCATG+TGG + chr1_3:16690495-16690514 Msa0106890:intron 30.0%
! TTTGAGTTAAGAGAAATGCT+AGG - chr1_3:16690623-16690642 None:intergenic 30.0%
TGTTGAAAAGACATAATGCT+TGG - chr1_3:16690988-16691007 None:intergenic 30.0%
! ACACATTTTTCCTTCATTCA+TGG + chr1_3:16691208-16691227 Msa0106890:intron 30.0%
ATTACTAGTTCGATCTAAGT+TGG + chr1_3:16691422-16691441 Msa0106890:intron 30.0%
TTTGGAAGTTTAAGGGATAT+TGG - chr1_3:16691527-16691546 None:intergenic 30.0%
!! AACCTGATTTGGAAGTTTAA+GGG - chr1_3:16691534-16691553 None:intergenic 30.0%
TACAACGAGGTTATGATATT+TGG + chr1_3:16691573-16691592 Msa0106890:CDS 30.0%
ATGATATTTGGCTAGTGAAT+TGG + chr1_3:16691585-16691604 Msa0106890:CDS 30.0%
AGCTTTCCATCTTGAAGAAT+TGG - chr1_3:16687718-16687737 None:intergenic 35.0%
AATCTATTCCCATTTCCGAA+GGG - chr1_3:16687939-16687958 None:intergenic 35.0%
TAATCTATTCCCATTTCCGA+AGG - chr1_3:16687940-16687959 None:intergenic 35.0%
GATACCAAAAGGTTTCACTA+AGG + chr1_3:16688290-16688309 Msa0106890:CDS 35.0%
! ATTTCCCAATTTTTGCCATC+TGG - chr1_3:16688357-16688376 None:intergenic 35.0%
GAGTACGACTAAAATCAATG+GGG + chr1_3:16688377-16688396 Msa0106890:CDS 35.0%
!!! TGGGGATTTTTGGTTTCAAA+AGG + chr1_3:16688395-16688414 Msa0106890:CDS 35.0%
!!! GGGGATTTTTGGTTTCAAAA+GGG + chr1_3:16688396-16688415 Msa0106890:CDS 35.0%
GGAAAGGATATTCAATCTCA+AGG - chr1_3:16688527-16688546 None:intergenic 35.0%
TGATCAACAAAGTAGTGATG+AGG + chr1_3:16688575-16688594 Msa0106890:CDS 35.0%
! TGAGGACTCCATTGAAATTT+TGG + chr1_3:16688593-16688612 Msa0106890:CDS 35.0%
!! CTAGTTTTCTTCTTGCATGA+AGG - chr1_3:16688627-16688646 None:intergenic 35.0%
!! GGACACATAATTGGTGATTT+TGG - chr1_3:16688651-16688670 None:intergenic 35.0%
CTCAATTTCTTATGTGGTTG+AGG - chr1_3:16688672-16688691 None:intergenic 35.0%
TTCGACTTCGAAATTTCCAT+TGG - chr1_3:16688811-16688830 None:intergenic 35.0%
! GTTCATTTTCCTAGAGGATA+CGG + chr1_3:16688851-16688870 Msa0106890:intron 35.0%
! TTCATTTTCCTAGAGGATAC+GGG + chr1_3:16688852-16688871 Msa0106890:intron 35.0%
!!! CTAGCTCGTGCTTTATTTTT+CGG - chr1_3:16688893-16688912 None:intergenic 35.0%
TTCATGGTAATCCTGAAAGA+AGG - chr1_3:16688990-16689009 None:intergenic 35.0%
TGACATTCTTCTTCAACTCT+TGG + chr1_3:16689186-16689205 Msa0106890:CDS 35.0%
ATTCTTCTTCAACTCTTGGA+TGG + chr1_3:16689190-16689209 Msa0106890:CDS 35.0%
TGGGATGCTAAATATTGTTC+TGG + chr1_3:16689220-16689239 Msa0106890:CDS 35.0%
CTGGAAAAATTAAAGGTGGA+TGG + chr1_3:16689239-16689258 Msa0106890:CDS 35.0%
!!! CAAAGTAAGGTATTGGCTTT+TGG - chr1_3:16689323-16689342 None:intergenic 35.0%
! AAACAAGTTGGATTACCTTG+AGG - chr1_3:16689391-16689410 None:intergenic 35.0%
TCAAAGAGACAAAGACTTCT+CGG + chr1_3:16689490-16689509 Msa0106890:CDS 35.0%
ATAGTAACTCTTAGAGTAGC+TGG + chr1_3:16689592-16689611 Msa0106890:intron 35.0%
TAGTAACTCTTAGAGTAGCT+GGG + chr1_3:16689593-16689612 Msa0106890:intron 35.0%
CAACCCAAAAAACTTCATTG+CGG + chr1_3:16689715-16689734 Msa0106890:CDS 35.0%
!!! TGTCCGCAATGAAGTTTTTT+GGG - chr1_3:16689721-16689740 None:intergenic 35.0%
!!! TTGTCCGCAATGAAGTTTTT+TGG - chr1_3:16689722-16689741 None:intergenic 35.0%
AAAAACTTCATTGCGGACAA+AGG + chr1_3:16689722-16689741 Msa0106890:CDS 35.0%
TGGAGTTGAATTTATCAGCT+TGG - chr1_3:16689776-16689795 None:intergenic 35.0%
! CAGATGGTGATGTTAAAGTT+TGG + chr1_3:16690018-16690037 Msa0106890:CDS 35.0%
!! TAGAGGTTGGAAGCTATTTT+GGG + chr1_3:16690101-16690120 Msa0106890:CDS 35.0%
TGTCTTTGAGCTTATCAAGA+GGG + chr1_3:16690155-16690174 Msa0106890:CDS 35.0%
GCAATTGAGATTTCAAGCTA+TGG + chr1_3:16690211-16690230 Msa0106890:intron 35.0%
GGGGGGAAATTTACATTAAA+AGG + chr1_3:16690373-16690392 Msa0106890:intron 35.0%
! GTGGTTTCACACTTTAGAAA+TGG + chr1_3:16690514-16690533 Msa0106890:intron 35.0%
AAACACAATTTCACACCGTA+CGG - chr1_3:16690723-16690742 None:intergenic 35.0%
GTTATGTGTGACTTCTTGTA+AGG + chr1_3:16690743-16690762 Msa0106890:intron 35.0%
TGTTAAACTCGTGTTGAACA+TGG - chr1_3:16690886-16690905 None:intergenic 35.0%
! ATGTCTTTTCAACAACACAC+CGG + chr1_3:16690994-16691013 Msa0106890:intron 35.0%
ACTCACGAAGTTCAATAGTT+AGG - chr1_3:16691065-16691084 None:intergenic 35.0%
AAATGAAATGGTACTCGTTG+AGG - chr1_3:16691170-16691189 None:intergenic 35.0%
CAGATTGAAGCAAATTGAGT+TGG - chr1_3:16691269-16691288 None:intergenic 35.0%
! CAACTCAATTTGCTTCAATC+TGG + chr1_3:16691267-16691286 Msa0106890:intron 35.0%
ATCCCTTAAACTTCCAAATC+AGG + chr1_3:16691529-16691548 Msa0106890:CDS 35.0%
!! CAACCTGATTTGGAAGTTTA+AGG - chr1_3:16691535-16691554 None:intergenic 35.0%
! ATTTTGCACTCAACCTGATT+TGG - chr1_3:16691545-16691564 None:intergenic 35.0%
! AGGTTGAGTGCAAAATGTTT+TGG + chr1_3:16691549-16691568 Msa0106890:CDS 35.0%
! GGTTGAGTGCAAAATGTTTT+GGG + chr1_3:16691550-16691569 Msa0106890:CDS 35.0%
!! AAAATGTTTTGGGTACAACG+AGG + chr1_3:16691560-16691579 Msa0106890:CDS 35.0%
! AGTGATATTTCTACACCTCA+AGG + chr1_3:16691806-16691825 Msa0106890:CDS 35.0%
! GTGATATTTCTACACCTCAA+GGG + chr1_3:16691807-16691826 Msa0106890:CDS 35.0%
ACGAATAGTAGAAGCAGAGA+GGG - chr1_3:16687674-16687693 None:intergenic 40.0%
AACGAATAGTAGAAGCAGAG+AGG - chr1_3:16687675-16687694 None:intergenic 40.0%
ACCACACCAATTCTTCAAGA+TGG + chr1_3:16687709-16687728 Msa0106890:CDS 40.0%
TCCATCTTGAAGAATTGGTG+TGG - chr1_3:16687713-16687732 None:intergenic 40.0%
GGTTATTCGACCCATCTTTA+GGG - chr1_3:16687972-16687991 None:intergenic 40.0%
TTGGTATCATCTACAACGCA+TGG - chr1_3:16688278-16688297 None:intergenic 40.0%
GCGTTGTAGATGATACCAAA+AGG + chr1_3:16688279-16688298 Msa0106890:intron 40.0%
! TGGTCCTTAGTGAAACCTTT+TGG - chr1_3:16688297-16688316 None:intergenic 40.0%
! TCTGGAGTCTTGAGAAACAT+TGG - chr1_3:16688339-16688358 None:intergenic 40.0%
ATGTTTCTCAAGACTCCAGA+TGG + chr1_3:16688339-16688358 Msa0106890:CDS 40.0%
AGACTCCAGATGGCAAAAAT+TGG + chr1_3:16688349-16688368 Msa0106890:CDS 40.0%
GACTCCAGATGGCAAAAATT+GGG + chr1_3:16688350-16688369 Msa0106890:CDS 40.0%
!! TTCAATCTCAAGGGTACTCT+TGG - chr1_3:16688517-16688536 None:intergenic 40.0%
TGTGGTTGAGGACACATAAT+TGG - chr1_3:16688660-16688679 None:intergenic 40.0%
TTGAGAAGTGACTCAAGTGA+AGG + chr1_3:16688687-16688706 Msa0106890:CDS 40.0%
! CATGATGCTTAGGCAAGTTT+TGG - chr1_3:16688734-16688753 None:intergenic 40.0%
CTAGATTGGACATGATGCTT+AGG - chr1_3:16688744-16688763 None:intergenic 40.0%
AAGCATCATGTCCAATCTAG+TGG + chr1_3:16688744-16688763 Msa0106890:CDS 40.0%
CAAAAAGCAATACCAAGAGC+AGG + chr1_3:16688926-16688945 Msa0106890:CDS 40.0%
TATTTAACTGCTCCTGCTCT+TGG - chr1_3:16688941-16688960 None:intergenic 40.0%
AACTCTTGGATGGAAGAGTT+TGG + chr1_3:16689200-16689219 Msa0106890:CDS 40.0%
ACTCTTGGATGGAAGAGTTT+GGG + chr1_3:16689201-16689220 Msa0106890:CDS 40.0%
!! TGTTTTTGTCGCGTTATGAC+AGG + chr1_3:16689684-16689703 Msa0106890:intron 40.0%
CTTGGATAACAAGGAACAGA+TGG + chr1_3:16690002-16690021 Msa0106890:CDS 40.0%
! AAACTGGCCTGATTTCATGT+TGG - chr1_3:16690079-16690098 None:intergenic 40.0%
!! AAATCAGGCCAGTTTTGTAG+AGG + chr1_3:16690084-16690103 Msa0106890:CDS 40.0%
! GTAGAGGTTGGAAGCTATTT+TGG + chr1_3:16690100-16690119 Msa0106890:CDS 40.0%
GTGTCTTTGAGCTTATCAAG+AGG + chr1_3:16690154-16690173 Msa0106890:CDS 40.0%
TTTCACAACAAGCAGCACAT+GGG + chr1_3:16690337-16690356 Msa0106890:intron 40.0%
AATCCATGTTCTCATCCGTA+CGG + chr1_3:16690705-16690724 Msa0106890:intron 40.0%
CTCGTGTTGAACATGGTATA+TGG - chr1_3:16690879-16690898 None:intergenic 40.0%
! CTCAATTTGCTTCAATCTGG+TGG + chr1_3:16691270-16691289 Msa0106890:intron 40.0%
TGTGTTTGCAGATGATTCCA+AGG + chr1_3:16691465-16691484 Msa0106890:intron 40.0%
AAAGATTTGCACGATCGCTT+AGG + chr1_3:16691609-16691628 Msa0106890:CDS 40.0%
TTGTCAATGTTTGTCCCTTG+AGG - chr1_3:16691824-16691843 None:intergenic 40.0%
TCAACCCAGCAAAAAATCAC+AGG + chr1_3:16691863-16691882 Msa0106890:CDS 40.0%
!!! CTTGCCTGTGATTTTTTGCT+GGG - chr1_3:16691870-16691889 None:intergenic 40.0%
!!! ACTTGCCTGTGATTTTTTGC+TGG - chr1_3:16691871-16691890 None:intergenic 40.0%
GGGTTATTCGACCCATCTTT+AGG - chr1_3:16687973-16687992 None:intergenic 45.0%
TTCACTAGATCATGGGCACA+TGG + chr1_3:16688443-16688462 Msa0106890:CDS 45.0%
! AGTGACTCAAGTGAAGGTGT+TGG + chr1_3:16688693-16688712 Msa0106890:CDS 45.0%
TTGGATTACCTTGAGGTGGA+GGG - chr1_3:16689384-16689403 None:intergenic 45.0%
! CAAGTTGGATTACCTTGAGG+TGG - chr1_3:16689388-16689407 None:intergenic 45.0%
! GCATCGATGTTCTGCACATA+TGG + chr1_3:16689556-16689575 Msa0106890:intron 45.0%
! TGGGACTGATTTCTCTACGA+GGG + chr1_3:16689612-16689631 Msa0106890:intron 45.0%
! CAGCCCGCAAACAAATTTTG+AGG + chr1_3:16689640-16689659 Msa0106890:intron 45.0%
! CTAGAATGCCCTCGTTGATT+TGG - chr1_3:16689828-16689847 None:intergenic 45.0%
!! TCAACGAGGGCATTCTAGAT+TGG + chr1_3:16689830-16689849 Msa0106890:CDS 45.0%
GCTTCCAACCTCTACAAAAC+TGG - chr1_3:16690095-16690114 None:intergenic 45.0%
CTTTCACAACAAGCAGCACA+TGG + chr1_3:16690336-16690355 Msa0106890:intron 45.0%
GAAATGGATCCCACGTAAAG+TGG + chr1_3:16690530-16690549 Msa0106890:intron 45.0%
TTCCCTTAGCATCACTTCCA+CGG - chr1_3:16691032-16691051 None:intergenic 45.0%
!! AAAAATATCAAATTTAATTA+TGG - chr1_3:16690306-16690325 None:intergenic 5.0%
TGGATTACCTTGAGGTGGAG+GGG - chr1_3:16689383-16689402 None:intergenic 50.0%
GTTGGATTACCTTGAGGTGG+AGG - chr1_3:16689385-16689404 None:intergenic 50.0%
! CTGGGACTGATTTCTCTACG+AGG + chr1_3:16689611-16689630 Msa0106890:intron 50.0%
TCGCGTTATGACAGGAGAGA+AGG + chr1_3:16689692-16689711 Msa0106890:intron 50.0%
!! CAGGCCAGTTTTGTAGAGGT+TGG + chr1_3:16690088-16690107 Msa0106890:CDS 50.0%
TGGGTCTCACCACTTTACGT+GGG - chr1_3:16690542-16690561 None:intergenic 50.0%
ACACCGTACGGATGAGAACA+TGG - chr1_3:16690711-16690730 None:intergenic 50.0%
TTTGCACGATCGCTTAGGTG+TGG + chr1_3:16691614-16691633 Msa0106890:CDS 50.0%
ACATGGGCGCATGTGAGAGA+GGG + chr1_3:16690353-16690372 Msa0106890:intron 55.0%
GTGGGTCTCACCACTTTACG+TGG - chr1_3:16690543-16690562 None:intergenic 55.0%
CAACACACCGGCGTTCACTA+TGG + chr1_3:16691006-16691025 Msa0106890:intron 55.0%
TGGCCGTGGAAGTGATGCTA+AGG + chr1_3:16691026-16691045 Msa0106890:intron 55.0%
GGCCGTGGAAGTGATGCTAA+GGG + chr1_3:16691027-16691046 Msa0106890:intron 55.0%
CGCTAGCACCCGTATCCTCT+AGG - chr1_3:16688863-16688882 None:intergenic 60.0%
CACATGGGCGCATGTGAGAG+AGG + chr1_3:16690352-16690371 Msa0106890:intron 60.0%
CATGGGCGCATGTGAGAGAG+GGG + chr1_3:16690354-16690373 Msa0106890:intron 60.0%
ATGGGCGCATGTGAGAGAGG+GGG + chr1_3:16690355-16690374 Msa0106890:intron 60.0%
TCCACGGCCATAGTGAACGC+CGG - chr1_3:16691016-16691035 None:intergenic 60.0%
! CCTTGAGGTGGAGGGGTGTG+TGG - chr1_3:16689376-16689395 None:intergenic 65.0%
CCACACACCCCTCCACCTCA+AGG + chr1_3:16689373-16689392 Msa0106890:CDS 65.0%
TGGGCGCATGTGAGAGAGGG+GGG + chr1_3:16690356-16690375 Msa0106890:intron 65.0%
ACCGGCGTTCACTATGGCCG+TGG + chr1_3:16691012-16691031 Msa0106890:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 16687643 16691907 16687643 ID=Msa0106890;Name=Msa0106890
chr1_3 mRNA 16687643 16691907 16687643 ID=Msa0106890-mRNA-1;Parent=Msa0106890;Name=Msa0106890-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|0.87|1|1|8|0|621
chr1_3 exon 16687643 16687738 16687643 ID=Msa0106890-mRNA-1:exon:6287;Parent=Msa0106890-mRNA-1
chr1_3 exon 16688288 16688765 16688288 ID=Msa0106890-mRNA-1:exon:6288;Parent=Msa0106890-mRNA-1
chr1_3 exon 16688865 16689037 16688865 ID=Msa0106890-mRNA-1:exon:6289;Parent=Msa0106890-mRNA-1
chr1_3 exon 16689139 16689394 16689139 ID=Msa0106890-mRNA-1:exon:6290;Parent=Msa0106890-mRNA-1
chr1_3 exon 16689483 16689545 16689483 ID=Msa0106890-mRNA-1:exon:6291;Parent=Msa0106890-mRNA-1
chr1_3 exon 16689706 16689851 16689706 ID=Msa0106890-mRNA-1:exon:6292;Parent=Msa0106890-mRNA-1
chr1_3 exon 16689973 16690194 16689973 ID=Msa0106890-mRNA-1:exon:6293;Parent=Msa0106890-mRNA-1
chr1_3 exon 16691476 16691907 16691476 ID=Msa0106890-mRNA-1:exon:6294;Parent=Msa0106890-mRNA-1
chr1_3 CDS 16687643 16687738 16687643 ID=Msa0106890-mRNA-1:cds;Parent=Msa0106890-mRNA-1
chr1_3 CDS 16688288 16688765 16688288 ID=Msa0106890-mRNA-1:cds;Parent=Msa0106890-mRNA-1
chr1_3 CDS 16688865 16689037 16688865 ID=Msa0106890-mRNA-1:cds;Parent=Msa0106890-mRNA-1
chr1_3 CDS 16689139 16689394 16689139 ID=Msa0106890-mRNA-1:cds;Parent=Msa0106890-mRNA-1
chr1_3 CDS 16689483 16689545 16689483 ID=Msa0106890-mRNA-1:cds;Parent=Msa0106890-mRNA-1
chr1_3 CDS 16689706 16689851 16689706 ID=Msa0106890-mRNA-1:cds;Parent=Msa0106890-mRNA-1
chr1_3 CDS 16689973 16690194 16689973 ID=Msa0106890-mRNA-1:cds;Parent=Msa0106890-mRNA-1
chr1_3 CDS 16691476 16691907 16691476 ID=Msa0106890-mRNA-1:cds;Parent=Msa0106890-mRNA-1
Gene Sequence

>Msa0106890

ATGACTAGCAATAAGGGAACTAAGCATACCCTCTCTGCTTCTACTATTCGTTTCTTTAGAGTTATTACCACACCAATTCTTCAAGATGGAAAGCTTATGATACCAAAAGGTTTCACTAAGGACCATATGAATGACATGTCAAATCCAATGTTTCTCAAGACTCCAGATGGCAAAAATTGGGAAATGAGTACGACTAAAATCAATGGGGATTTTTGGTTTCAAAAGGGTTGGAAAGAATTTGCTACACATTATTCACTAGATCATGGGCACATGGTATTATTTCAATATGAAGAAAACTCTCATTTTGTGGTGCATATATTTTCCAAGAGTACCCTTGAGATTGAATATCCTTTCCATGAAAATCAACATGAACAAAGCAACTTTGATCAACAAAGTAGTGATGAGGACTCCATTGAAATTTTGGACAAGTCACCTTCATGCAAGAAGAAAACTAGACCAAAATCACCAATTATGTGTCCTCAACCACATAAGAAATTGAGAAGTGACTCAAGTGAAGGTGTTGGAACAAGCTCGAGATTCCAAAACTTGCCTAAGCATCATGTCCAATCTAGTGAGGATACGGGTGCTAGCGCTGAATTCCGAAAAATAAAGCACGAGCTAGAACAAGATCAAGACAAAAAGCAATACCAAGAGCAGGAGCAGTTAAATAGAGTTAGAAGCTTCAAATCAAATAATCCTTCTTTCAGGATTACCATGAAGTCTTCACATATTTATAGTCATTCCTTGTATGTCCCATCACAATTTGCTAACAATCATATGAAGAAAGAGCAAAGTGACATTCTTCTTCAACTCTTGGATGGAAGAGTTTGGGATGCTAAATATTGTTCTGGAAAAATTAAAGGTGGATGGAAGAAATTTGCAGTACACAACAAGTTGAAAATTGGGGATGTGTGTATTTTTGAACTAACCAAAAGCCAATACCTTACTTTGAAAGTAATAATATTTAGACTTGAGGAAGATCCACACACCCCTCCACCTCAAGAATCAGTTCAAAGAGACAAAGACTTCTCGGATGTTGAAAGTGAAACTATTATAACAAATAAAGGAGAGAAGGCAACCCAAAAAACTTCATTGCGGACAAAGGCTGAATTCTTTACTAATGAAGCTGAGAACCAAGCTGATAAATTCAACTCCAAATATCCATTTTTCAAGGTCAATATTATGCCAAATCAACGAGGGCATTCTAGATTGCATGTACCAAATTCCTTCATTACAAATTACTTGGATAACAAGGAACAGATGGTGATGTTAAAGTTTGGGAAGAAATTGTGGCCTGTAAAGTTGCATTGTTATTCCAACATGAAATCAGGCCAGTTTTGTAGAGGTTGGAAGCTATTTTGGGAAGAAAATAAATTGAAAGGTGGAGATGCATGTGTCTTTGAGCTTATCAAGAGGGAAGATGTTGTGCTTAATATGATTCCAAGGAATTTTGTAGAAAGATATTGGAAAGATTTATCAAATCCAATATCCCTTAAACTTCCAAATCAGGTTGAGTGCAAAATGTTTTGGGTACAACGAGGTTATGATATTTGGCTAGTGAATTGGAAAAGATTTGCACGATCGCTTAGGTGTGGAGATCTTTTAGTTTTTCAATATAAAGGAGGGTCAGATTTTCATGTCATTGTATTAGATGATAGTAAATTGGAAATTGACTATTCAAGTATGAGATGCAACGACGAACAAGATTCTAACAAGCACTTTAAACAAGAAGAAGAAAGTGATTATGATTGTGTTGAGATTCTGAGTGATATTTCTACACCTCAAGGGACAAACATTGACAAGAAAAAAATTATTATGTCTTCAACCCAGCAAAAAATCACAGGCAAGTTCATCTACTTGATTTGA
Protein sequence

>Msa0106890

MTSNKGTKHTLSASTIRFFRVITTPILQDGKLMIPKGFTKDHMNDMSNPMFLKTPDGKNWEMSTTKINGDFWFQKGWKEFATHYSLDHGHMVLFQYEENSHFVVHIFSKSTLEIEYPFHENQHEQSNFDQQSSDEDSIEILDKSPSCKKKTRPKSPIMCPQPHKKLRSDSSEGVGTSSRFQNLPKHHVQSSEDTGASAEFRKIKHELEQDQDKKQYQEQEQLNRVRSFKSNNPSFRITMKSSHIYSHSLYVPSQFANNHMKKEQSDILLQLLDGRVWDAKYCSGKIKGGWKKFAVHNKLKIGDVCIFELTKSQYLTLKVIIFRLEEDPHTPPPQESVQRDKDFSDVESETIITNKGEKATQKTSLRTKAEFFTNEAENQADKFNSKYPFFKVNIMPNQRGHSRLHVPNSFITNYLDNKEQMVMLKFGKKLWPVKLHCYSNMKSGQFCRGWKLFWEENKLKGGDACVFELIKREDVVLNMIPRNFVERYWKDLSNPISLKLPNQVECKMFWVQRGYDIWLVNWKRFARSLRCGDLLVFQYKGGSDFHVIVLDDSKLEIDYSSMRCNDEQDSNKHFKQEEESDYDCVEILSDISTPQGTNIDKKKIIMSSTQQKITGKFIYLI*