Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106910 | KEH26464.1 | 45.810 | 179 | 76 | 7 | 349 | 509 | 61 | 236 | 2.20e-24 | 119 |
| Msa0106910 | KEH26464.1 | 61.333 | 150 | 27 | 2 | 515 | 664 | 348 | 466 | 1.73e-44 | 177 |
| Msa0106910 | KEH26464.1 | 63.559 | 472 | 98 | 5 | 1 | 399 | 2 | 472 | 0.0 | 576 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106910 | A0A072U9K2 | 45.810 | 179 | 76 | 7 | 349 | 509 | 61 | 236 | 1.05e-24 | 119 |
| Msa0106910 | A0A072U9K2 | 61.333 | 150 | 27 | 2 | 515 | 664 | 348 | 466 | 8.28e-45 | 177 |
| Msa0106910 | A0A072U9K2 | 63.559 | 472 | 98 | 5 | 1 | 399 | 2 | 472 | 0.0 | 576 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0106910 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106910 | MtrunA17_Chr6g0476171 | 70.565 | 248 | 46 | 4 | 177 | 399 | 2 | 247 | 3.76e-111 | 336 |
| Msa0106910 | MtrunA17_Chr6g0476171 | 81.250 | 96 | 17 | 1 | 569 | 664 | 147 | 241 | 4.65e-47 | 167 |
| Msa0106910 | MtrunA17_Chr6g0476171 | 79.167 | 48 | 10 | 0 | 462 | 509 | 2 | 49 | 8.73e-16 | 77.8 |
| Msa0106910 | MtrunA17_Chr1g0163101 | 63.021 | 192 | 34 | 3 | 1 | 175 | 1 | 172 | 4.52e-73 | 234 |
| Msa0106910 | MtrunA17_Chr1g0163131 | 42.056 | 321 | 136 | 8 | 5 | 295 | 6 | 306 | 7.04e-65 | 217 |
| Msa0106910 | MtrunA17_Chr1g0163131 | 45.205 | 73 | 38 | 1 | 592 | 664 | 232 | 302 | 1.34e-12 | 69.3 |
| Msa0106910 | MtrunA17_Chr6g0476181 | 67.320 | 153 | 39 | 1 | 32 | 173 | 1 | 153 | 9.09e-64 | 209 |
| Msa0106910 | MtrunA17_Chr1g0163141 | 68.323 | 161 | 33 | 3 | 31 | 173 | 9 | 169 | 2.01e-62 | 206 |
| Msa0106910 | MtrunA17_Chr1g0163181 | 34.136 | 457 | 199 | 19 | 15 | 397 | 1 | 429 | 2.55e-57 | 201 |
| Msa0106910 | MtrunA17_Chr1g0162161 | 60.000 | 165 | 33 | 3 | 32 | 180 | 3 | 150 | 1.43e-55 | 187 |
| Msa0106910 | MtrunA17_Chr1g0163201 | 33.716 | 436 | 179 | 17 | 33 | 408 | 19 | 404 | 8.77e-54 | 190 |
| Msa0106910 | MtrunA17_Chr1g0163201 | 26.225 | 347 | 197 | 13 | 360 | 663 | 57 | 387 | 1.25e-13 | 73.6 |
| Msa0106910 | MtrunA17_Chr1g0163261 | 38.924 | 316 | 146 | 11 | 17 | 311 | 9 | 298 | 8.51e-53 | 184 |
| Msa0106910 | MtrunA17_Chr1g0163231 | 38.907 | 311 | 121 | 12 | 17 | 297 | 9 | 280 | 5.35e-47 | 168 |
| Msa0106910 | MtrunA17_Chr1g0163251 | 37.500 | 312 | 133 | 12 | 26 | 308 | 14 | 292 | 1.81e-45 | 167 |
| Msa0106910 | MtrunA17_Chr1g0163081 | 55.000 | 160 | 34 | 4 | 32 | 175 | 5 | 142 | 6.74e-45 | 157 |
| Msa0106910 | MtrunA17_Chr1g0163121 | 51.553 | 161 | 34 | 4 | 31 | 175 | 9 | 141 | 2.10e-41 | 147 |
| Msa0106910 | MtrunA17_Chr1g0163161 | 54.730 | 148 | 32 | 4 | 45 | 175 | 1 | 130 | 1.38e-40 | 145 |
| Msa0106910 | MtrunA17_Chr1g0171611 | 36.013 | 311 | 118 | 10 | 17 | 297 | 9 | 268 | 1.18e-37 | 142 |
| Msa0106910 | MtrunA17_Chr1g0163151 | 39.810 | 211 | 101 | 7 | 209 | 397 | 15 | 221 | 3.02e-32 | 124 |
| Msa0106910 | MtrunA17_Chr1g0163151 | 40.000 | 90 | 46 | 3 | 576 | 663 | 133 | 216 | 4.08e-13 | 69.3 |
| Msa0106910 | MtrunA17_Chr1g0163111 | 38.914 | 221 | 99 | 10 | 209 | 397 | 12 | 228 | 1.20e-31 | 123 |
| Msa0106910 | MtrunA17_Chr1g0163111 | 40.964 | 83 | 45 | 3 | 582 | 663 | 144 | 223 | 6.43e-14 | 72.0 |
| Msa0106910 | MtrunA17_Chr1g0162151 | 35.556 | 225 | 109 | 7 | 187 | 396 | 3 | 206 | 1.61e-30 | 119 |
| Msa0106910 | MtrunA17_Chr1g0163091 | 43.125 | 160 | 64 | 7 | 187 | 330 | 3 | 151 | 1.75e-25 | 103 |
| Msa0106910 | MtrunA17_Chr1g0208771 | 26.774 | 310 | 183 | 12 | 33 | 312 | 13 | 308 | 6.43e-23 | 102 |
| Msa0106910 | MtrunA17_Chr3g0131891 | 26.911 | 327 | 166 | 13 | 11 | 298 | 13 | 305 | 1.87e-22 | 99.4 |
| Msa0106910 | MtrunA17_Chr8g0390841 | 26.911 | 327 | 195 | 12 | 15 | 312 | 37 | 348 | 6.90e-22 | 100 |
| Msa0106910 | MtrunA17_Chr1g0163221 | 23.919 | 393 | 233 | 11 | 11 | 386 | 5 | 348 | 7.56e-22 | 97.8 |
| Msa0106910 | MtrunA17_Chr4g0067431 | 27.679 | 336 | 183 | 15 | 12 | 308 | 10 | 324 | 8.07e-22 | 97.1 |
| Msa0106910 | MtrunA17_Chr7g0233561 | 26.061 | 330 | 177 | 10 | 10 | 298 | 11 | 314 | 3.27e-20 | 92.4 |
| Msa0106910 | MtrunA17_Chr1g0163241 | 39.437 | 142 | 64 | 5 | 33 | 154 | 23 | 162 | 3.48e-20 | 88.2 |
| Msa0106910 | MtrunA17_Chr1g0163191 | 40.741 | 108 | 50 | 3 | 26 | 119 | 14 | 121 | 2.59e-19 | 85.5 |
| Msa0106910 | MtrunA17_Chr1g0163071 | 25.987 | 304 | 179 | 12 | 32 | 301 | 1 | 292 | 2.14e-18 | 86.7 |
| Msa0106910 | MtrunA17_Chr7g0233541 | 27.759 | 299 | 167 | 10 | 32 | 298 | 1 | 282 | 2.59e-18 | 86.3 |
| Msa0106910 | MtrunA17_Chr7g0233521 | 25.503 | 298 | 158 | 7 | 32 | 298 | 1 | 265 | 4.23e-18 | 85.1 |
| Msa0106910 | MtrunA17_Chr7g0233531 | 26.756 | 299 | 153 | 12 | 32 | 298 | 1 | 265 | 2.44e-16 | 80.1 |
| Msa0106910 | MtrunA17_Chr3g0103181 | 25.000 | 324 | 160 | 14 | 7 | 294 | 2 | 278 | 1.00e-15 | 78.2 |
| Msa0106910 | MtrunA17_Chr6g0467351 | 43.182 | 88 | 46 | 3 | 14 | 97 | 12 | 99 | 4.16e-15 | 75.5 |
| Msa0106910 | MtrunA17_Chr5g0419201 | 28.856 | 201 | 102 | 8 | 2 | 175 | 5 | 191 | 9.40e-15 | 73.2 |
| Msa0106910 | MtrunA17_Chr7g0233571 | 28.125 | 224 | 132 | 7 | 16 | 225 | 9 | 217 | 1.72e-14 | 73.6 |
| Msa0106910 | MtrunA17_Chr3g0103151 | 31.690 | 142 | 81 | 4 | 15 | 142 | 10 | 149 | 6.28e-14 | 70.1 |
| Msa0106910 | MtrunA17_Chr3g0103171 | 22.559 | 297 | 159 | 9 | 33 | 295 | 6 | 265 | 1.70e-13 | 71.2 |
| Msa0106910 | MtrunA17_Chr1g0154111 | 23.131 | 428 | 249 | 13 | 15 | 383 | 24 | 430 | 3.77e-13 | 72.8 |
| Msa0106910 | MtrunA17_Chr1g0163061 | 43.182 | 88 | 46 | 2 | 14 | 97 | 12 | 99 | 5.18e-13 | 70.1 |
| Msa0106910 | MtrunA17_Chr1g0154131 | 24.567 | 289 | 159 | 11 | 28 | 282 | 193 | 456 | 9.89e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 118 sgRNAs with CRISPR-Local
Find 281 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGAATATGTGAGCAATTT+TGG | 0.126491 | 1_3:-16710301 | Msa0106910:CDS |
| AGAACAAAGAAAACAGTTTA+AGG | 0.216118 | 1_3:+16710179 | None:intergenic |
| GATATTAATTGAAAGTAGTT+TGG | 0.268883 | 1_3:+16709037 | None:intergenic |
| CATTCAACTTTGTGAATTGC+AGG | 0.285867 | 1_3:-16714481 | Msa0106910:CDS |
| GGGCATGGTTCCTTTGTGGC+TGG | 0.290615 | 1_3:+16712147 | None:intergenic |
| TATATTGGATGATAGTAGTT+TGG | 0.295324 | 1_3:-16713404 | Msa0106910:intron |
| TTGAATTTGTCATGTAAATT+CGG | 0.311912 | 1_3:+16710133 | None:intergenic |
| TTGAATTTGTCATGTAAATT+CGG | 0.311912 | 1_3:+16711905 | None:intergenic |
| TATAATGAGCATCTCGACTA+TGG | 0.312686 | 1_3:-16709900 | Msa0106910:CDS |
| GTGAAATTCGGATTCTCATT+AGG | 0.326576 | 1_3:+16710506 | None:intergenic |
| AAAAGACATGATATATTTAG+TGG | 0.333899 | 1_3:-16709975 | Msa0106910:CDS |
| TAAGATAATTTCACTGTCAT+TGG | 0.342908 | 1_3:+16710890 | None:intergenic |
| GGTCTGAGTTCAAAATGAAT+TGG | 0.350012 | 1_3:-16713540 | Msa0106910:CDS |
| ATTCACAAAGTTGAATGGTT+TGG | 0.365673 | 1_3:+16714487 | None:intergenic |
| TACAACGCGGTGACGATGTT+TGG | 0.370214 | 1_3:-16713516 | Msa0106910:CDS |
| TTATAACCTTCAATGTGATA+TGG | 0.376198 | 1_3:+16712781 | None:intergenic |
| CTCTGGGCATGGTTCCTTTG+TGG | 0.384680 | 1_3:+16712143 | None:intergenic |
| AATCTGACCCTCCTTTGTAT+TGG | 0.385935 | 1_3:+16713437 | None:intergenic |
| CTGCAATTCACAAAGTTGAA+TGG | 0.392583 | 1_3:+16714482 | None:intergenic |
| GACGATGCCAGAAGAAGATA+TGG | 0.392753 | 1_3:-16710320 | Msa0106910:CDS |
| TGATATATTTAGTGGAAATT+CGG | 0.394530 | 1_3:-16709967 | Msa0106910:CDS |
| ACATATTCCATATCTTCTTC+TGG | 0.395565 | 1_3:+16710313 | None:intergenic |
| GGCATGGTTCCTTTGTGGCT+GGG | 0.402651 | 1_3:+16712148 | None:intergenic |
| ACGATGTTTGGCTTCAGAAC+TGG | 0.404512 | 1_3:-16713504 | Msa0106910:CDS |
| CATTGAAGGTTATAATAGAT+TGG | 0.414338 | 1_3:-16712773 | Msa0106910:intron |
| CGTGCAAAATCATGTATTCA+AGG | 0.415158 | 1_3:-16711600 | Msa0106910:CDS |
| GAAATACCTTGAAACTGCTC+TGG | 0.423422 | 1_3:+16712126 | None:intergenic |
| TGTACTAAGTGGAAATTTAG+TGG | 0.423447 | 1_3:-16711768 | Msa0106910:CDS |
| TATTCTTTCGAAAACCATCT+AGG | 0.429204 | 1_3:+16712384 | None:intergenic |
| CTTCCTTCATTACGATAGCT+TGG | 0.436747 | 1_3:+16709006 | None:intergenic |
| ATAGTAATTGTGAATGAAAG+TGG | 0.438268 | 1_3:+16712174 | None:intergenic |
| TTCCTTCATTACGATAGCTT+GGG | 0.442937 | 1_3:+16709007 | None:intergenic |
| TATGATCAACATCTCGATCA+TGG | 0.447909 | 1_3:-16711704 | Msa0106910:CDS |
| TCATCGTTGCATGTCATACT+TGG | 0.450255 | 1_3:+16710942 | None:intergenic |
| CTCAAACAAGCAAGTGTCTC+CGG | 0.453496 | 1_3:+16709827 | None:intergenic |
| GATAATTTGAGAGTGAAATT+CGG | 0.453700 | 1_3:+16710494 | None:intergenic |
| TTAGAAGTGTTGGTGAGGAC+AGG | 0.455257 | 1_3:-16712329 | Msa0106910:CDS |
| GTCTGAGTTCAAAATGAATT+GGG | 0.455385 | 1_3:-16713539 | Msa0106910:CDS |
| GAATTTACATGACAAATTCA+AGG | 0.456040 | 1_3:-16710131 | Msa0106910:CDS |
| GAATTTACATGACAAATTCA+AGG | 0.456040 | 1_3:-16711903 | Msa0106910:CDS |
| TTATCGCCATATCACATTGA+AGG | 0.463256 | 1_3:-16712787 | Msa0106910:CDS |
| CTAATAGAAACTGTGGAGGC+CGG | 0.465574 | 1_3:-16712906 | Msa0106910:CDS |
| AGAGATCGCAAAGTGAAGAT+TGG | 0.467048 | 1_3:-16711650 | Msa0106910:CDS |
| AAGGAACATGACTTGAAAGT+TGG | 0.470859 | 1_3:-16712231 | Msa0106910:CDS |
| TGTCTCTCTACGAATTTCCT+TGG | 0.471061 | 1_3:+16713607 | None:intergenic |
| AGCAGCACTCTCATTTGTGT+TGG | 0.476523 | 1_3:+16710845 | None:intergenic |
| TAATAGAAACTGTGGAGGCC+GGG | 0.483673 | 1_3:-16712905 | Msa0106910:CDS |
| TTCCCAAGCTATCGTAATGA+AGG | 0.489760 | 1_3:-16709009 | Msa0106910:CDS |
| TCAATGTCAAGTGTTCACTA+TGG | 0.491973 | 1_3:-16714543 | Msa0106910:CDS |
| TGAAACAGATAATACCTAGA+TGG | 0.494737 | 1_3:-16712398 | Msa0106910:intron |
| GTGGAGTTGAAAGCAGAAGA+AGG | 0.502821 | 1_3:-16711749 | Msa0106910:CDS |
| AGAGGAAGAAACATGGTTTG+TGG | 0.504030 | 1_3:-16709931 | Msa0106910:CDS |
| TCACAAATTATCATCCCAAT+GGG | 0.508213 | 1_3:-16712831 | Msa0106910:CDS |
| TTGCCAATGTTTGTCCCTTG+AGG | 0.510253 | 1_3:+16713220 | None:intergenic |
| TTCACAAATTATCATCCCAA+TGG | 0.514529 | 1_3:-16712832 | Msa0106910:CDS |
| ACATCGCTTAGACTTCCAAA+TGG | 0.515725 | 1_3:-16713562 | Msa0106910:CDS |
| CCATGCCCAGAGCAGTTTCA+AGG | 0.516067 | 1_3:-16712132 | Msa0106910:intron |
| TGGACGTGGGAGTGAAGCTA+AGG | 0.519368 | 1_3:-16714523 | Msa0106910:CDS |
| TGTGCAAAATCATGTGTTCA+AGG | 0.521657 | 1_3:-16709796 | Msa0106910:intron |
| GGAAATTCGTAGAGAGACAT+TGG | 0.530097 | 1_3:-16713603 | Msa0106910:CDS |
| TTTGGAAGTCTAAGCGATGT+TGG | 0.531226 | 1_3:+16713565 | None:intergenic |
| TTTGGCTTCAGAACTGGAAG+AGG | 0.532764 | 1_3:-16713498 | Msa0106910:CDS |
| GAGAGTGCTGCTACACCTCA+AGG | 0.536330 | 1_3:-16710834 | Msa0106910:CDS |
| CCTTGAAACTGCTCTGGGCA+TGG | 0.538312 | 1_3:+16712132 | None:intergenic |
| TAATCTATCACCTTCCACAT+AGG | 0.538404 | 1_3:+16710466 | None:intergenic |
| CAATGATGAACAAGAAGCTA+AGG | 0.539148 | 1_3:-16713356 | Msa0106910:CDS |
| GATCATGGGTGGTTCACTAA+AGG | 0.540814 | 1_3:-16711689 | Msa0106910:CDS |
| CAAATTATCGCGATCCTATG+TGG | 0.541750 | 1_3:-16710480 | Msa0106910:CDS |
| AGAAGAAGGAACATGGTTTG+TGG | 0.547977 | 1_3:-16711735 | Msa0106910:CDS |
| ATGCAGCTGGTTGTACTAAG+TGG | 0.550003 | 1_3:-16711779 | Msa0106910:intron |
| ATTTCTTAGCTTTCTTACCC+CGG | 0.551754 | 1_3:+16712887 | None:intergenic |
| AATAGAAACTGTGGAGGCCG+GGG | 0.552110 | 1_3:-16712904 | Msa0106910:CDS |
| GACTATGGGTGGTTCACTGA+AGG | 0.552574 | 1_3:-16709885 | Msa0106910:CDS |
| ACTAGTGCTGCTACACCTCA+AGG | 0.555707 | 1_3:-16713235 | Msa0106910:CDS |
| CATCGCTTAGACTTCCAAAT+GGG | 0.555762 | 1_3:-16713561 | Msa0106910:CDS |
| TTGCTAATGCTTGTCCCTTG+AGG | 0.556750 | 1_3:+16710819 | None:intergenic |
| ATGATCAACATCTCGATCAT+GGG | 0.558223 | 1_3:-16711703 | Msa0106910:CDS |
| ATGGGTGGTTCACTGAAGGC+TGG | 0.558556 | 1_3:-16709881 | Msa0106910:CDS |
| TGTTCTTGCAGATGATTCCA+AGG | 0.559130 | 1_3:-16713624 | Msa0106910:intron |
| TTCGGTGGAGTTGAAAGTAG+AGG | 0.559890 | 1_3:-16709949 | Msa0106910:CDS |
| TATATTTAGTGGAAATTCGG+TGG | 0.560367 | 1_3:-16709964 | Msa0106910:CDS |
| TAGAAGTGTTGGTGAGGACA+GGG | 0.562489 | 1_3:-16712328 | Msa0106910:CDS |
| ATAATGAGCATCTCGACTAT+GGG | 0.562604 | 1_3:-16709899 | Msa0106910:CDS |
| AGAGATTGCAAAGTAAAGAC+CGG | 0.565440 | 1_3:-16709846 | Msa0106910:CDS |
| GATAATTTGACAGTGAAACT+AGG | 0.566923 | 1_3:+16712805 | None:intergenic |
| TCAAGTGTTCACTATGGACG+TGG | 0.567496 | 1_3:-16714537 | Msa0106910:CDS |
| AATATTGTTTGCTAGTGTTG+TGG | 0.571148 | 1_3:+16710919 | None:intergenic |
| CTCACCAACACTTCTAATTG+TGG | 0.571224 | 1_3:+16712335 | None:intergenic |
| AAGGCCACAATTAGAAGTGT+TGG | 0.571434 | 1_3:-16712339 | Msa0106910:CDS |
| AATAGAAACAGAGGAGGCAG+TGG | 0.572767 | 1_3:-16710593 | Msa0106910:CDS |
| GTGAAACTAGGACTCCCATT+GGG | 0.573485 | 1_3:+16712817 | None:intergenic |
| ACACCTCAAGGGACAAACAT+TGG | 0.575666 | 1_3:-16713223 | Msa0106910:CDS |
| ATGAAGGAAGGTGATGAAGA+AGG | 0.581850 | 1_3:-16708993 | None:intergenic |
| TTTGCGCGCTCTCTCAGATG+TGG | 0.586381 | 1_3:-16713475 | Msa0106910:CDS |
| AGTGAAACTAGGACTCCCAT+TGG | 0.586614 | 1_3:+16712816 | None:intergenic |
| ATGGGTGGTTCACTAAAGGT+TGG | 0.588689 | 1_3:-16711685 | Msa0106910:CDS |
| AAATACCTTGAAACTGCTCT+GGG | 0.589681 | 1_3:+16712127 | None:intergenic |
| TGAAAGTAGAGGAAGAAACA+TGG | 0.594057 | 1_3:-16709938 | Msa0106910:CDS |
| CACAATTAGAAGTGTTGGTG+AGG | 0.602624 | 1_3:-16712334 | Msa0106910:CDS |
| TGAAAGCAGAAGAAGGAACA+TGG | 0.607559 | 1_3:-16711742 | Msa0106910:CDS |
| GCAGAGGCTAATAGAAACAG+AGG | 0.613643 | 1_3:-16710602 | Msa0106910:intron |
| CAAGCTATCGTAATGAAGGA+AGG | 0.620753 | 1_3:-16709005 | Msa0106910:CDS |
| TTATCGCGATCCTATGTGGA+AGG | 0.625238 | 1_3:-16710476 | Msa0106910:intron |
| ATCAACATCTCGATCATGGG+TGG | 0.629808 | 1_3:-16711700 | Msa0106910:CDS |
| GGACGTGGGAGTGAAGCTAA+GGG | 0.640577 | 1_3:-16714522 | Msa0106910:CDS |
| AGAGTGCTGCTACACCTCAA+GGG | 0.641943 | 1_3:-16710833 | Msa0106910:CDS |
| GCAGAGGCTAATAGAAACTG+TGG | 0.644824 | 1_3:-16712913 | Msa0106910:CDS |
| TACTATTATCCCAGCCACAA+AGG | 0.646969 | 1_3:-16712157 | Msa0106910:CDS |
| GAATGAGTTATTGCAACAGA+AGG | 0.647927 | 1_3:-16712358 | Msa0106910:CDS |
| GTGTTGGTGAGGACAGGGCA+TGG | 0.648324 | 1_3:-16712323 | Msa0106910:CDS |
| ATGAGCATCTCGACTATGGG+TGG | 0.648558 | 1_3:-16709896 | Msa0106910:CDS |
| GGAAGAAACATGGTTTGTGG+AGG | 0.653505 | 1_3:-16709928 | Msa0106910:CDS |
| CTAGTGCTGCTACACCTCAA+GGG | 0.659036 | 1_3:-16713234 | Msa0106910:CDS |
| AGAAGGAACATGGTTTGTGG+AGG | 0.660933 | 1_3:-16711732 | Msa0106910:CDS |
| GAGGCTAATAGAAACAGAGG+AGG | 0.693921 | 1_3:-16710599 | Msa0106910:CDS |
| GAGGCTAATAGAAACTGTGG+AGG | 0.696340 | 1_3:-16712910 | Msa0106910:CDS |
| CAAGTGTTCACTATGGACGT+GGG | 0.700697 | 1_3:-16714536 | Msa0106910:CDS |
| AAAATGAATTGGGTACAACG+CGG | 0.771281 | 1_3:-16713529 | Msa0106910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTTATTCAATAATTAAATT+GGG | + | chr1_3:16709216-16709235 | None:intergenic | 10.0% |
| !! | AGTTTATTCAATAATTAAAT+TGG | + | chr1_3:16709217-16709236 | None:intergenic | 10.0% |
| !!! | TTTAGGTATATTTTAATTAT+TGG | - | chr1_3:16711044-16711063 | Msa0106910:intron | 10.0% |
| !! | TTATTAGAGATATTAATTAA+AGG | + | chr1_3:16714262-16714281 | None:intergenic | 10.0% |
| !!! | TATTGAATAAACTTTGTTAT+CGG | - | chr1_3:16709224-16709243 | Msa0106910:intron | 15.0% |
| !!! | AGTTTTTGAAATTAAATTCA+TGG | - | chr1_3:16709629-16709648 | Msa0106910:intron | 15.0% |
| !!! | AATTATTTTCAGCATTTAAA+AGG | + | chr1_3:16712902-16712921 | None:intergenic | 15.0% |
| !!! | TAATTTAATTTTTTTTGCAG+AGG | - | chr1_3:16712917-16712936 | Msa0106910:CDS | 15.0% |
| !! | TGTTTACTAAAATAAAGTAT+AGG | + | chr1_3:16713109-16713128 | None:intergenic | 15.0% |
| !!! | TTATAATTGCTTTGATTTGA+TGG | - | chr1_3:16709326-16709345 | Msa0106910:intron | 20.0% |
| !!! | CAAAATTTTAGGTAGAAATT+GGG | + | chr1_3:16709412-16709431 | None:intergenic | 20.0% |
| !!! | TCAAAATTTTAGGTAGAAAT+TGG | + | chr1_3:16709413-16709432 | None:intergenic | 20.0% |
| !!! | GTTTTTAGTGTCAAAATTTT+AGG | + | chr1_3:16709423-16709442 | None:intergenic | 20.0% |
| !! | TACGGATTTATTATCATTAA+TGG | - | chr1_3:16709454-16709473 | Msa0106910:intron | 20.0% |
| !!! | TTTTGAAATTAAATTCATGG+AGG | - | chr1_3:16709632-16709651 | Msa0106910:intron | 20.0% |
| !!! | AGATTTTCATGTCATTATAT+TGG | - | chr1_3:16710116-16710135 | Msa0106910:CDS | 20.0% |
| !! | ACATTGACAAAAATGTTATT+AGG | - | chr1_3:16710392-16710411 | Msa0106910:intron | 20.0% |
| !! | AATTTGTATGCATTAAAAAG+TGG | + | chr1_3:16710426-16710445 | None:intergenic | 20.0% |
| !! | TAAAAAATACGTAAATACAG+CGG | + | chr1_3:16710485-16710504 | None:intergenic | 20.0% |
| !! | TATTTACAAGAGAAACATTT+GGG | + | chr1_3:16710893-16710912 | None:intergenic | 20.0% |
| !!! | ATCATGTGTAACAAATTTTA+AGG | - | chr1_3:16711491-16711510 | Msa0106910:intron | 20.0% |
| !! | TTGAATTTGTCATGTAAATT+CGG | + | chr1_3:16711633-16711652 | None:intergenic | 20.0% |
| !!! | TTTATTTTTTATGACAGTCA+TGG | + | chr1_3:16712849-16712868 | None:intergenic | 20.0% |
| !! | AAATACACAAAAAGTAAAGA+TGG | - | chr1_3:16712978-16712997 | Msa0106910:intron | 20.0% |
| !! | AATACACAAAAAGTAAAGAT+GGG | - | chr1_3:16712979-16712998 | Msa0106910:intron | 20.0% |
| !! | AGTAGTATGTTTACATTATT+TGG | + | chr1_3:16713134-16713153 | None:intergenic | 20.0% |
| !! | TTGAATTTGTCATGTAAATT+CGG | + | chr1_3:16711633-16711652 | None:intergenic | 20.0% |
| !! | AAAAGACATGATATATTTAG+TGG | - | chr1_3:16713560-16713579 | Msa0106910:CDS | 20.0% |
| !! | TGATATATTTAGTGGAAATT+CGG | - | chr1_3:16713568-16713587 | Msa0106910:CDS | 20.0% |
| !!! | AAAGAAAGCATCTTAAAAAA+AGG | + | chr1_3:16714160-16714179 | None:intergenic | 20.0% |
| !! | TAGTAAATTTACAAATAGCT+CGG | + | chr1_3:16714217-16714236 | None:intergenic | 20.0% |
| !! | GATATTAATTGAAAGTAGTT+TGG | + | chr1_3:16714501-16714520 | None:intergenic | 20.0% |
| ! | AATCGAAAGAATGAATGAAA+TGG | + | chr1_3:16709123-16709142 | None:intergenic | 25.0% |
| ! | ATTGGGTCAATGATTAAAAT+GGG | + | chr1_3:16709199-16709218 | None:intergenic | 25.0% |
| ! | AATTGGGTCAATGATTAAAA+TGG | + | chr1_3:16709200-16709219 | None:intergenic | 25.0% |
| ! | AATGATAATAAATCCGTACA+TGG | + | chr1_3:16709452-16709471 | None:intergenic | 25.0% |
| ! | CATTAATGGAATTCATCATT+TGG | - | chr1_3:16709468-16709487 | Msa0106910:intron | 25.0% |
| !! | TACAAGAAATCTGAAGTAAT+TGG | + | chr1_3:16709708-16709727 | None:intergenic | 25.0% |
| ! | TGTTTGATACATATATGCTT+TGG | - | chr1_3:16709764-16709783 | Msa0106910:intron | 25.0% |
| ! | CATTTCTAATTGAAACTCAT+TGG | - | chr1_3:16709878-16709897 | Msa0106910:CDS | 25.0% |
| !!! | CTTTTAGTTTTCCAATACAA+AGG | - | chr1_3:16710087-16710106 | Msa0106910:intron | 25.0% |
| ! | TATATTGGATGATAGTAGTT+TGG | - | chr1_3:16710131-16710150 | Msa0106910:CDS | 25.0% |
| !! | TTGATTTTCTTTTTCTTGAG+GGG | + | chr1_3:16710264-16710283 | None:intergenic | 25.0% |
| !!! | GTTGATTTTCTTTTTCTTGA+GGG | + | chr1_3:16710265-16710284 | None:intergenic | 25.0% |
| !!! | AGTTGATTTTCTTTTTCTTG+AGG | + | chr1_3:16710266-16710285 | None:intergenic | 25.0% |
| ! | AAAAAATACGTAAATACAGC+GGG | + | chr1_3:16710484-16710503 | None:intergenic | 25.0% |
| !!! | TAGTTTTTAAAGTTTTGCAG+AGG | - | chr1_3:16710606-16710625 | Msa0106910:intron | 25.0% |
| ! | AATGCACAAAAACTAAAGAT+AGG | - | chr1_3:16710668-16710687 | Msa0106910:intron | 25.0% |
| ! | TTATAACCTTCAATGTGATA+TGG | + | chr1_3:16710757-16710776 | None:intergenic | 25.0% |
| ! | CATTGAAGGTTATAATAGAT+TGG | - | chr1_3:16710762-16710781 | Msa0106910:intron | 25.0% |
| ! | ATTTACAAGAGAAACATTTG+GGG | + | chr1_3:16710892-16710911 | None:intergenic | 25.0% |
| ! | CTATTTACAAGAGAAACATT+TGG | + | chr1_3:16710894-16710913 | None:intergenic | 25.0% |
| ! | ACTAACAGAAAACATATTCA+AGG | - | chr1_3:16710931-16710950 | Msa0106910:CDS | 25.0% |
| ! | AAGTAACAATAGAGACATTT+AGG | - | chr1_3:16711027-16711046 | Msa0106910:intron | 25.0% |
| ! | ATAGTAATTGTGAATGAAAG+TGG | + | chr1_3:16711364-16711383 | None:intergenic | 25.0% |
| ! | GAATTTACATGACAAATTCA+AGG | - | chr1_3:16711632-16711651 | Msa0106910:CDS | 25.0% |
| ! | GATTGATTATCAAAATCATG+TGG | - | chr1_3:16712150-16712169 | Msa0106910:CDS | 25.0% |
| ! | ATGGAAAATTAGCATAGATT+GGG | + | chr1_3:16712365-16712384 | None:intergenic | 25.0% |
| ! | TAAGATAATTTCACTGTCAT+TGG | + | chr1_3:16712648-16712667 | None:intergenic | 25.0% |
| ! | GATAATTTGAGAGTGAAATT+CGG | + | chr1_3:16713044-16713063 | None:intergenic | 25.0% |
| ! | AGAACAAAGAAAACAGTTTA+AGG | + | chr1_3:16713359-16713378 | None:intergenic | 25.0% |
| ! | GAATTTACATGACAAATTCA+AGG | - | chr1_3:16711632-16711651 | Msa0106910:CDS | 25.0% |
| !! | TTTTGTAACATCATTAGACA+AGG | - | chr1_3:16713428-16713447 | Msa0106910:intron | 25.0% |
| ! | TTTGTTCTTATATATGCAGT+TGG | - | chr1_3:16713514-16713533 | Msa0106910:CDS | 25.0% |
| !!! | TTTGTGTTTTGTCACTTTAA+GGG | - | chr1_3:16713784-16713803 | Msa0106910:intron | 25.0% |
| ! | TATTCTTTAATTGTGAGACT+TGG | - | chr1_3:16713826-16713845 | Msa0106910:intron | 25.0% |
| ATTCACAAAGTTGAATGGTT+TGG | + | chr1_3:16709051-16709070 | None:intergenic | 30.0% | |
| GAATACGAAGATTTGAATGT+TGG | - | chr1_3:16709254-16709273 | Msa0106910:intron | 30.0% | |
| ! | CATACATAGTTTTTCTCACA+TGG | - | chr1_3:16709283-16709302 | Msa0106910:intron | 30.0% |
| !! | TAATTGCTTTGATTTGATGG+AGG | - | chr1_3:16709329-16709348 | Msa0106910:intron | 30.0% |
| !!! | ATCTGGTTTTCTTAGGTATT+TGG | - | chr1_3:16709370-16709389 | Msa0106910:intron | 30.0% |
| TAAAAACAAACAGCCATGTA+CGG | - | chr1_3:16709436-16709455 | Msa0106910:intron | 30.0% | |
| TAATGGAATTCATCATTTGG+TGG | - | chr1_3:16709471-16709490 | Msa0106910:intron | 30.0% | |
| AATCATACCAACTCTTTAAG+TGG | - | chr1_3:16709518-16709537 | Msa0106910:intron | 30.0% | |
| ! | CATGATCAAAACAGTATTGA+GGG | + | chr1_3:16709581-16709600 | None:intergenic | 30.0% |
| GTCTGAGTTCAAAATGAATT+GGG | - | chr1_3:16709996-16710015 | Msa0106910:CDS | 30.0% | |
| !! | TTAGTTTTCCAATACAAAGG+AGG | - | chr1_3:16710090-16710109 | Msa0106910:intron | 30.0% |
| ! | TAGTTTTCCAATACAAAGGA+GGG | - | chr1_3:16710091-16710110 | Msa0106910:intron | 30.0% |
| ! | TGGGTATTTTCATGATCATT+CGG | + | chr1_3:16710237-16710256 | None:intergenic | 30.0% |
| ! | GTTCACGTCTTGATTTTTAA+TGG | + | chr1_3:16710540-16710559 | None:intergenic | 30.0% |
| TTCACAAATTATCATCCCAA+TGG | - | chr1_3:16710703-16710722 | Msa0106910:intron | 30.0% | |
| TCACAAATTATCATCCCAAT+GGG | - | chr1_3:16710704-16710723 | Msa0106910:intron | 30.0% | |
| GATAATTTGACAGTGAAACT+AGG | + | chr1_3:16710733-16710752 | None:intergenic | 30.0% | |
| !! | AGAGGCTTTCATTTTTCTAT+AGG | - | chr1_3:16710837-16710856 | Msa0106910:CDS | 30.0% |
| ATAAGTATATGTAACGTGCA+TGG | + | chr1_3:16711078-16711097 | None:intergenic | 30.0% | |
| ATCTAGGTATTATCTGTTTC+AGG | + | chr1_3:16711138-16711157 | None:intergenic | 30.0% | |
| TGAAACAGATAATACCTAGA+TGG | - | chr1_3:16711137-16711156 | Msa0106910:intron | 30.0% | |
| TATTCTTTCGAAAACCATCT+AGG | + | chr1_3:16711154-16711173 | None:intergenic | 30.0% | |
| GTAGTATGTTTACATTGACA+AGG | + | chr1_3:16711527-16711546 | None:intergenic | 30.0% | |
| ! | TTTTGTAACATCATTCGACA+AGG | - | chr1_3:16711656-16711675 | Msa0106910:CDS | 30.0% |
| TTTGTTCTTATATATGCAGC+TGG | - | chr1_3:16711743-16711762 | Msa0106910:CDS | 30.0% | |
| TGTACTAAGTGGAAATTTAG+TGG | - | chr1_3:16711767-16711786 | Msa0106910:CDS | 30.0% | |
| CAAACATTCTTCTAAACATC+TGG | + | chr1_3:16711972-16711991 | None:intergenic | 30.0% | |
| ATTATCAAAATCATGTGGTC+AGG | - | chr1_3:16712155-16712174 | Msa0106910:CDS | 30.0% | |
| TTATCAAAATCATGTGGTCA+GGG | - | chr1_3:16712156-16712175 | Msa0106910:CDS | 30.0% | |
| CATGGAAAATTAGCATAGAT+TGG | + | chr1_3:16712366-16712385 | None:intergenic | 30.0% | |
| ! | AATATTGTTTGCTAGTGTTG+TGG | + | chr1_3:16712619-16712638 | None:intergenic | 30.0% |
| !! | TTGGTTTTCTTTTTCTTCAG+GGG | + | chr1_3:16712674-16712693 | None:intergenic | 30.0% |
| !!! | GTTGGTTTTCTTTTTCTTCA+GGG | + | chr1_3:16712675-16712694 | None:intergenic | 30.0% |
| !!! | TGTTGGTTTTCTTTTTCTTC+AGG | + | chr1_3:16712676-16712695 | None:intergenic | 30.0% |
| ACATATTCCATATCTTCTTC+TGG | + | chr1_3:16713225-16713244 | None:intergenic | 30.0% | |
| ! | ATGGAATATGTGAGCAATTT+TGG | - | chr1_3:16713234-16713253 | Msa0106910:CDS | 30.0% |
| TATATTTAGTGGAAATTCGG+TGG | - | chr1_3:16713571-16713590 | Msa0106910:CDS | 30.0% | |
| !!! | GTTTGTGTTTTGTCACTTTA+AGG | - | chr1_3:16713783-16713802 | Msa0106910:intron | 30.0% |
| !!! | TTGTGTTTTGTCACTTTAAG+GGG | - | chr1_3:16713785-16713804 | Msa0106910:intron | 30.0% |
| ! | TTCTTTTACTTCAACCATGA+GGG | + | chr1_3:16713874-16713893 | None:intergenic | 30.0% |
| ! | TTTCTTTTACTTCAACCATG+AGG | + | chr1_3:16713875-16713894 | None:intergenic | 30.0% |
| TGGTTGAAGTAAAAGAAAAC+AGG | - | chr1_3:16713877-16713896 | Msa0106910:intron | 30.0% | |
| AAGAAAACAGGAAATTCAGA+AGG | - | chr1_3:16713889-16713908 | Msa0106910:intron | 30.0% | |
| TGCTTTACTGTTTAATGTTG+TGG | + | chr1_3:16714010-16714029 | None:intergenic | 30.0% | |
| ! | TTTTTGCACTGAATCATCTT+AGG | + | chr1_3:16714035-16714054 | None:intergenic | 30.0% |
| !!! | CTTTTTTTTGTTGTCTAGCT+AGG | - | chr1_3:16714133-16714152 | Msa0106910:intron | 30.0% |
| ATATGCACTGTTTCAATTCA+TGG | + | chr1_3:16714286-16714305 | None:intergenic | 30.0% | |
| ! | AATACTCGAACTAGTTTGAA+GGG | - | chr1_3:16714324-16714343 | Msa0106910:intron | 30.0% |
| CTGCAATTCACAAAGTTGAA+TGG | + | chr1_3:16709056-16709075 | None:intergenic | 35.0% | |
| CATTCAACTTTGTGAATTGC+AGG | - | chr1_3:16709054-16709073 | Msa0106910:CDS | 35.0% | |
| ATGTTGCATACTTGCTTATC+TGG | - | chr1_3:16709353-16709372 | Msa0106910:intron | 35.0% | |
| !!! | CTTGCTTATCTGGTTTTCTT+AGG | - | chr1_3:16709363-16709382 | Msa0106910:intron | 35.0% |
| ! | GGTTTTCTTAGGTATTTGGA+TGG | - | chr1_3:16709374-16709393 | Msa0106910:intron | 35.0% |
| AAACAGTCCACTTAAAGAGT+TGG | + | chr1_3:16709528-16709547 | None:intergenic | 35.0% | |
| !! | CTCTTTAAGTGGACTGTTTA+AGG | - | chr1_3:16709529-16709548 | Msa0106910:intron | 35.0% |
| CCATGATCAAAACAGTATTG+AGG | + | chr1_3:16709582-16709601 | None:intergenic | 35.0% | |
| !!! | CCTCAATACTGTTTTGATCA+TGG | - | chr1_3:16709579-16709598 | Msa0106910:intron | 35.0% |
| CTGATTAAGCAAACTGTGTT+GGG | + | chr1_3:16709791-16709810 | None:intergenic | 35.0% | |
| ACTGATTAAGCAAACTGTGT+TGG | + | chr1_3:16709792-16709811 | None:intergenic | 35.0% | |
| ! | ACACAGTTTGCTTAATCAGT+CGG | - | chr1_3:16709792-16709811 | Msa0106910:intron | 35.0% |
| ! | ATTTTGAACTCAGACCCATT+TGG | + | chr1_3:16709991-16710010 | None:intergenic | 35.0% |
| GGTCTGAGTTCAAAATGAAT+TGG | - | chr1_3:16709995-16710014 | Msa0106910:CDS | 35.0% | |
| AAAATGAATTGGGTACAACG+CGG | - | chr1_3:16710006-16710025 | Msa0106910:intron | 35.0% | |
| CAATGATGAACAAGAAGCTA+AGG | - | chr1_3:16710179-16710198 | Msa0106910:CDS | 35.0% | |
| !! | GACTGCATGTTTTTAATCCT+AGG | - | chr1_3:16710458-16710477 | Msa0106910:intron | 35.0% |
| ! | ATTTCTTAGCTTTCTTACCC+CGG | + | chr1_3:16710651-16710670 | None:intergenic | 35.0% |
| TTATCGCCATATCACATTGA+AGG | - | chr1_3:16710748-16710767 | Msa0106910:intron | 35.0% | |
| CAGTTAGGTACAAATATTGC+TGG | + | chr1_3:16710813-16710832 | None:intergenic | 35.0% | |
| TTTGTACCTAACTGTGTAAG+AGG | - | chr1_3:16710819-16710838 | Msa0106910:CDS | 35.0% | |
| ! | GTATTATCTGTTTCAGGTCA+TGG | + | chr1_3:16711132-16711151 | None:intergenic | 35.0% |
| GAATGAGTTATTGCAACAGA+AGG | - | chr1_3:16711177-16711196 | Msa0106910:intron | 35.0% | |
| !! | CAAGAGCAGTTTTATAATGC+AGG | - | chr1_3:16711261-16711280 | Msa0106910:intron | 35.0% |
| !! | AGCAGTTTTATAATGCAGGT+TGG | - | chr1_3:16711265-16711284 | Msa0106910:intron | 35.0% |
| !!! | GTTTTATAATGCAGGTTGGT+TGG | - | chr1_3:16711269-16711288 | Msa0106910:intron | 35.0% |
| !! | TGGTTGGAAGTCATTTTCAA+AGG | - | chr1_3:16711285-16711304 | Msa0106910:intron | 35.0% |
| AAGGAACATGACTTGAAAGT+TGG | - | chr1_3:16711304-16711323 | Msa0106910:intron | 35.0% | |
| AAATACCTTGAAACTGCTCT+GGG | + | chr1_3:16711411-16711430 | None:intergenic | 35.0% | |
| CACACACATGGCTATATAAA+TGG | + | chr1_3:16711706-16711725 | None:intergenic | 35.0% | |
| ATTCTACACATTCACACACA+TGG | + | chr1_3:16711718-16711737 | None:intergenic | 35.0% | |
| TATGATCAACATCTCGATCA+TGG | - | chr1_3:16711831-16711850 | Msa0106910:intron | 35.0% | |
| ATGATCAACATCTCGATCAT+GGG | - | chr1_3:16711832-16711851 | Msa0106910:intron | 35.0% | |
| CGTGCAAAATCATGTATTCA+AGG | - | chr1_3:16711935-16711954 | Msa0106910:intron | 35.0% | |
| TGAATGCAAAGTGAAGATTG+AGG | - | chr1_3:16712105-16712124 | Msa0106910:intron | 35.0% | |
| AGCACTCATATTTCATAGAG+TGG | + | chr1_3:16712302-16712321 | None:intergenic | 35.0% | |
| GTAACGAAAGATAAGCAACA+TGG | + | chr1_3:16712384-16712403 | None:intergenic | 35.0% | |
| ! | TTTACCTGAGACTTTTTGCT+GGG | + | chr1_3:16712765-16712784 | None:intergenic | 35.0% |
| ! | CAGGTAAAGTACATGTTTTC+TGG | - | chr1_3:16712777-16712796 | Msa0106910:CDS | 35.0% |
| GTGAAATTCGGATTCTCATT+AGG | + | chr1_3:16713032-16713051 | None:intergenic | 35.0% | |
| TAATCTATCACCTTCCACAT+AGG | + | chr1_3:16713072-16713091 | None:intergenic | 35.0% | |
| !! | ACTCTTTGCTTTTGATCACA+AGG | - | chr1_3:16713151-16713170 | Msa0106910:intron | 35.0% |
| ! | GCATCGTCTCTGATTTTATT+TGG | + | chr1_3:16713203-16713222 | None:intergenic | 35.0% |
| ! | TGTCTTTTTAACAGCTCACT+TGG | + | chr1_3:16713548-16713567 | None:intergenic | 35.0% |
| TGAAAGTAGAGGAAGAAACA+TGG | - | chr1_3:16713597-16713616 | Msa0106910:CDS | 35.0% | |
| TATAATGAGCATCTCGACTA+TGG | - | chr1_3:16713635-16713654 | Msa0106910:intron | 35.0% | |
| ATAATGAGCATCTCGACTAT+GGG | - | chr1_3:16713636-16713655 | Msa0106910:intron | 35.0% | |
| AGAGATTGCAAAGTAAAGAC+CGG | - | chr1_3:16713689-16713708 | Msa0106910:intron | 35.0% | |
| TGTGCAAAATCATGTGTTCA+AGG | - | chr1_3:16713739-16713758 | Msa0106910:intron | 35.0% | |
| AAAACAGGAAATTCAGAAGG+CGG | - | chr1_3:16713892-16713911 | Msa0106910:intron | 35.0% | |
| ! | GAATACTCGAACTAGTTTGA+AGG | - | chr1_3:16714323-16714342 | Msa0106910:intron | 35.0% |
| TGGTTGGAATTTATTTGCGA+AGG | - | chr1_3:16714433-16714452 | Msa0106910:intron | 35.0% | |
| TTCCTTCATTACGATAGCTT+GGG | + | chr1_3:16714531-16714550 | None:intergenic | 35.0% | |
| ! | GGTATGATTGAGAGTACAAG+TGG | + | chr1_3:16709507-16709526 | None:intergenic | 40.0% |
| TCTTGTATTAGTGCTACGCA+TGG | - | chr1_3:16709721-16709740 | Msa0106910:intron | 40.0% | |
| TGTTCTTGCAGATGATTCCA+AGG | - | chr1_3:16709911-16709930 | Msa0106910:CDS | 40.0% | |
| TGTCTCTCTACGAATTTCCT+TGG | + | chr1_3:16709931-16709950 | None:intergenic | 40.0% | |
| GGAAATTCGTAGAGAGACAT+TGG | - | chr1_3:16709932-16709951 | Msa0106910:CDS | 40.0% | |
| TTTGGAAGTCTAAGCGATGT+TGG | + | chr1_3:16709973-16709992 | None:intergenic | 40.0% | |
| ACATCGCTTAGACTTCCAAA+TGG | - | chr1_3:16709973-16709992 | Msa0106910:CDS | 40.0% | |
| CATCGCTTAGACTTCCAAAT+GGG | - | chr1_3:16709974-16709993 | Msa0106910:CDS | 40.0% | |
| AATCTGACCCTCCTTTGTAT+TGG | + | chr1_3:16710101-16710120 | None:intergenic | 40.0% | |
| ! | CTTTTTCTTGAGGGGTTGTT+GGG | + | chr1_3:16710256-16710275 | None:intergenic | 40.0% |
| ! | TCTTTTTCTTGAGGGGTTGT+TGG | + | chr1_3:16710257-16710276 | None:intergenic | 40.0% |
| GCATCCTTGCAAAAAGTTTC+AGG | - | chr1_3:16710357-16710376 | Msa0106910:intron | 40.0% | |
| ! | CTTGCCTGAAACTTTTTGCA+AGG | + | chr1_3:16710364-16710383 | None:intergenic | 40.0% |
| TGAAAGCCTCTTACACAGTT+AGG | + | chr1_3:16710828-16710847 | None:intergenic | 40.0% | |
| ! | AAGGCCACAATTAGAAGTGT+TGG | - | chr1_3:16711196-16711215 | Msa0106910:intron | 40.0% |
| CTCACCAACACTTCTAATTG+TGG | + | chr1_3:16711203-16711222 | None:intergenic | 40.0% | |
| !! | CACAATTAGAAGTGTTGGTG+AGG | - | chr1_3:16711201-16711220 | Msa0106910:intron | 40.0% |
| TACTATTATCCCAGCCACAA+AGG | - | chr1_3:16711378-16711397 | Msa0106910:intron | 40.0% | |
| GAAATACCTTGAAACTGCTC+TGG | + | chr1_3:16711412-16711431 | None:intergenic | 40.0% | |
| TGAAAGCAGAAGAAGGAACA+TGG | - | chr1_3:16711793-16711812 | Msa0106910:intron | 40.0% | |
| AGAAGAAGGAACATGGTTTG+TGG | - | chr1_3:16711800-16711819 | Msa0106910:intron | 40.0% | |
| AGAGATCGCAAAGTGAAGAT+TGG | - | chr1_3:16711885-16711904 | Msa0106910:CDS | 40.0% | |
| CTTGGTATTACGAAAGAGTG+AGG | + | chr1_3:16712409-16712428 | None:intergenic | 40.0% | |
| AAACCTCAAAGCTTGAAGGA+AGG | + | chr1_3:16712435-16712454 | None:intergenic | 40.0% | |
| GGTTAAACCTCAAAGCTTGA+AGG | + | chr1_3:16712439-16712458 | None:intergenic | 40.0% | |
| CGTGAACACATTCAACACAA+AGG | + | chr1_3:16712460-16712479 | None:intergenic | 40.0% | |
| TCATCGTTGCATGTCATACT+TGG | + | chr1_3:16712596-16712615 | None:intergenic | 40.0% | |
| ! | CTTTACCTGAGACTTTTTGC+TGG | + | chr1_3:16712766-16712785 | None:intergenic | 40.0% |
| CAAATTATCGCGATCCTATG+TGG | - | chr1_3:16713055-16713074 | Msa0106910:intron | 40.0% | |
| AACAGAAGCCCAAAAACACA+TGG | - | chr1_3:16713270-16713289 | Msa0106910:CDS | 40.0% | |
| AGAGGAAGAAACATGGTTTG+TGG | - | chr1_3:16713604-16713623 | Msa0106910:CDS | 40.0% | |
| TCTTGATGAACCTTGAGGAT+TGG | + | chr1_3:16713944-16713963 | None:intergenic | 40.0% | |
| CAATGTCTTGATGAACCTTG+AGG | + | chr1_3:16713949-16713968 | None:intergenic | 40.0% | |
| TAGTGTTGCACTAGCTACTA+TGG | - | chr1_3:16714099-16714118 | Msa0106910:intron | 40.0% | |
| TTGCACTAGCTACTATGGAA+TGG | - | chr1_3:16714104-16714123 | Msa0106910:intron | 40.0% | |
| TTGAAGGGACCGAAAGAATA+AGG | - | chr1_3:16714339-16714358 | Msa0106910:intron | 40.0% | |
| TGAAGGGACCGAAAGAATAA+GGG | - | chr1_3:16714340-16714359 | Msa0106910:intron | 40.0% | |
| AAACGTTCCATTGTGAACAC+TGG | - | chr1_3:16714413-16714432 | Msa0106910:intron | 40.0% | |
| ATTCCAACCAGTGTTCACAA+TGG | + | chr1_3:16714423-16714442 | None:intergenic | 40.0% | |
| TTCCCAAGCTATCGTAATGA+AGG | - | chr1_3:16714526-16714545 | Msa0106910:CDS | 40.0% | |
| CTTCCTTCATTACGATAGCT+TGG | + | chr1_3:16714532-16714551 | None:intergenic | 40.0% | |
| CAAGCTATCGTAATGAAGGA+AGG | - | chr1_3:16714530-16714549 | Msa0106910:CDS | 40.0% | |
| TCAAGTGTTCACTATGGACG+TGG | - | chr1_3:16708998-16709017 | Msa0106910:CDS | 45.0% | |
| CAAGTGTTCACTATGGACGT+GGG | - | chr1_3:16708999-16709018 | Msa0106910:CDS | 45.0% | |
| ATTAGTGCTACGCATGGCTT+TGG | - | chr1_3:16709727-16709746 | Msa0106910:intron | 45.0% | |
| ! | ACGATGTTTGGCTTCAGAAC+TGG | - | chr1_3:16710031-16710050 | Msa0106910:intron | 45.0% |
| ! | TTTGGCTTCAGAACTGGAAG+AGG | - | chr1_3:16710037-16710056 | Msa0106910:intron | 45.0% |
| ACACCTCAAGGGACAAACAT+TGG | - | chr1_3:16710312-16710331 | Msa0106910:CDS | 45.0% | |
| TTGCCAATGTTTGTCCCTTG+AGG | + | chr1_3:16710318-16710337 | None:intergenic | 45.0% | |
| GCAGAGGCTAATAGAAACTG+TGG | - | chr1_3:16710622-16710641 | Msa0106910:intron | 45.0% | |
| GAGGCTAATAGAAACTGTGG+AGG | - | chr1_3:16710625-16710644 | Msa0106910:intron | 45.0% | |
| CTAATAGAAACTGTGGAGGC+CGG | - | chr1_3:16710629-16710648 | Msa0106910:intron | 45.0% | |
| TAATAGAAACTGTGGAGGCC+GGG | - | chr1_3:16710630-16710649 | Msa0106910:intron | 45.0% | |
| GTGAAACTAGGACTCCCATT+GGG | + | chr1_3:16710721-16710740 | None:intergenic | 45.0% | |
| AGTGAAACTAGGACTCCCAT+TGG | + | chr1_3:16710722-16710741 | None:intergenic | 45.0% | |
| !! | TTAGAAGTGTTGGTGAGGAC+AGG | - | chr1_3:16711206-16711225 | Msa0106910:intron | 45.0% |
| !! | TAGAAGTGTTGGTGAGGACA+GGG | - | chr1_3:16711207-16711226 | Msa0106910:intron | 45.0% |
| ATGCAGCTGGTTGTACTAAG+TGG | - | chr1_3:16711756-16711775 | Msa0106910:CDS | 45.0% | |
| GTGGAGTTGAAAGCAGAAGA+AGG | - | chr1_3:16711786-16711805 | Msa0106910:intron | 45.0% | |
| ! | AGAAGGAACATGGTTTGTGG+AGG | - | chr1_3:16711803-16711822 | Msa0106910:intron | 45.0% |
| ATCAACATCTCGATCATGGG+TGG | - | chr1_3:16711835-16711854 | Msa0106910:intron | 45.0% | |
| GATCATGGGTGGTTCACTAA+AGG | - | chr1_3:16711846-16711865 | Msa0106910:intron | 45.0% | |
| ATGGGTGGTTCACTAAAGGT+TGG | - | chr1_3:16711850-16711869 | Msa0106910:intron | 45.0% | |
| GGTATTACGAAAGAGTGAGG+AGG | + | chr1_3:16712406-16712425 | None:intergenic | 45.0% | |
| AAGCTTGAAGGAAGGAGACT+TGG | + | chr1_3:16712427-16712446 | None:intergenic | 45.0% | |
| TCTCCTTCCTTCAAGCTTTG+AGG | - | chr1_3:16712429-16712448 | Msa0106910:intron | 45.0% | |
| GTGTTCACGACAGTTATGTG+CGG | - | chr1_3:16712471-16712490 | Msa0106910:intron | 45.0% | |
| AGCAGCACTCTCATTTGTGT+TGG | + | chr1_3:16712693-16712712 | None:intergenic | 45.0% | |
| TTGCTAATGCTTGTCCCTTG+AGG | + | chr1_3:16712719-16712738 | None:intergenic | 45.0% | |
| GCAGAGGCTAATAGAAACAG+AGG | - | chr1_3:16712933-16712952 | Msa0106910:intron | 45.0% | |
| GAGGCTAATAGAAACAGAGG+AGG | - | chr1_3:16712936-16712955 | Msa0106910:intron | 45.0% | |
| AATAGAAACAGAGGAGGCAG+TGG | - | chr1_3:16712942-16712961 | Msa0106910:intron | 45.0% | |
| TTATCGCGATCCTATGTGGA+AGG | - | chr1_3:16713059-16713078 | Msa0106910:intron | 45.0% | |
| ! | TGCTTTTGATCACAAGGCTG+TGG | - | chr1_3:16713157-16713176 | Msa0106910:intron | 45.0% |
| GACGATGCCAGAAGAAGATA+TGG | - | chr1_3:16713215-16713234 | Msa0106910:CDS | 45.0% | |
| ! | CTCCTGAGCCATGTGTTTTT+GGG | + | chr1_3:16713281-16713300 | None:intergenic | 45.0% |
| ! | ACTCCTGAGCCATGTGTTTT+TGG | + | chr1_3:16713282-16713301 | None:intergenic | 45.0% |
| TTCGGTGGAGTTGAAAGTAG+AGG | - | chr1_3:16713586-16713605 | Msa0106910:CDS | 45.0% | |
| ! | GGAAGAAACATGGTTTGTGG+AGG | - | chr1_3:16713607-16713626 | Msa0106910:CDS | 45.0% |
| CTCAAACAAGCAAGTGTCTC+CGG | + | chr1_3:16713711-16713730 | None:intergenic | 45.0% | |
| GAAACTGTGTTCTTCCCTCA+TGG | - | chr1_3:16713857-16713876 | Msa0106910:intron | 45.0% | |
| ! | GAAGCATCCATCATACCTGT+TGG | + | chr1_3:16713919-16713938 | None:intergenic | 45.0% |
| TGATGAACCTTGAGGATTGG+AGG | + | chr1_3:16713941-16713960 | None:intergenic | 45.0% | |
| CTCGCCAACCCTTATTCTTT+CGG | + | chr1_3:16714351-16714370 | None:intergenic | 45.0% | |
| GAGCTTGGAAGGTGAATATG+AGG | - | chr1_3:16714375-16714394 | Msa0106910:intron | 45.0% | |
| GTTCCATTGTGAACACTGGT+TGG | - | chr1_3:16714417-16714436 | Msa0106910:intron | 45.0% | |
| TACAACGCGGTGACGATGTT+TGG | - | chr1_3:16710019-16710038 | Msa0106910:intron | 50.0% | |
| ! | ACTAGTGCTGCTACACCTCA+AGG | - | chr1_3:16710300-16710319 | Msa0106910:CDS | 50.0% |
| ! | CTAGTGCTGCTACACCTCAA+GGG | - | chr1_3:16710301-16710320 | Msa0106910:CDS | 50.0% |
| TACGTAAATACAGCGGGCCT+AGG | + | chr1_3:16710478-16710497 | None:intergenic | 50.0% | |
| AATAGAAACTGTGGAGGCCG+GGG | - | chr1_3:16710631-16710650 | Msa0106910:intron | 50.0% | |
| !! | AGAGTGCTGCTACACCTCAA+GGG | - | chr1_3:16712702-16712721 | Msa0106910:intron | 50.0% |
| GCAACCCAGCAAAAAGTCTC+AGG | - | chr1_3:16712758-16712777 | Msa0106910:intron | 50.0% | |
| AGCCCAAAAACACATGGCTC+AGG | - | chr1_3:16713276-16713295 | Msa0106910:CDS | 50.0% | |
| ATGAGCATCTCGACTATGGG+TGG | - | chr1_3:16713639-16713658 | Msa0106910:intron | 50.0% | |
| GACTATGGGTGGTTCACTGA+AGG | - | chr1_3:16713650-16713669 | Msa0106910:intron | 50.0% | |
| AATTCAGAAGGCGGTCCAAC+AGG | - | chr1_3:16713901-16713920 | Msa0106910:intron | 50.0% | |
| GATGCTTCCTCCAATCCTCA+AGG | - | chr1_3:16713931-16713950 | Msa0106910:intron | 50.0% | |
| GGGACCGAAAGAATAAGGGT+TGG | - | chr1_3:16714344-16714363 | Msa0106910:intron | 50.0% | |
| ! | CGAAAGAATAAGGGTTGGCG+AGG | - | chr1_3:16714349-16714368 | Msa0106910:intron | 50.0% |
| TGGACGTGGGAGTGAAGCTA+AGG | - | chr1_3:16709012-16709031 | Msa0106910:CDS | 55.0% | |
| GGACGTGGGAGTGAAGCTAA+GGG | - | chr1_3:16709013-16709032 | Msa0106910:CDS | 55.0% | |
| TTTGCGCGCTCTCTCAGATG+TGG | - | chr1_3:16710060-16710079 | Msa0106910:intron | 55.0% | |
| GGCATGGTTCCTTTGTGGCT+GGG | + | chr1_3:16711390-16711409 | None:intergenic | 55.0% | |
| CTCTGGGCATGGTTCCTTTG+TGG | + | chr1_3:16711395-16711414 | None:intergenic | 55.0% | |
| ! | CCTTGAAACTGCTCTGGGCA+TGG | + | chr1_3:16711406-16711425 | None:intergenic | 55.0% |
| CCATGCCCAGAGCAGTTTCA+AGG | - | chr1_3:16711403-16711422 | Msa0106910:intron | 55.0% | |
| !! | GAGAGTGCTGCTACACCTCA+AGG | - | chr1_3:16712701-16712720 | Msa0106910:intron | 55.0% |
| ATGGGTGGTTCACTGAAGGC+TGG | - | chr1_3:16713654-16713673 | Msa0106910:intron | 55.0% | |
| AGGCGGTCCAACAGGTATGA+TGG | - | chr1_3:16713909-16713928 | Msa0106910:intron | 55.0% | |
| TGGCGAGGATAGAGCTTGGA+AGG | - | chr1_3:16714364-16714383 | Msa0106910:intron | 55.0% | |
| ! | GTGTTGGTGAGGACAGGGCA+TGG | - | chr1_3:16711212-16711231 | Msa0106910:intron | 60.0% |
| GGGCATGGTTCCTTTGTGGC+TGG | + | chr1_3:16711391-16711410 | None:intergenic | 60.0% | |
| ! | GGGTTGGCGAGGATAGAGCT+TGG | - | chr1_3:16714360-16714379 | Msa0106910:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 16708995 | 16714562 | 16708995 | ID=Msa0106910;Name=Msa0106910 |
| chr1_3 | mRNA | 16708995 | 16714562 | 16708995 | ID=Msa0106910-mRNA-1;Parent=Msa0106910;Name=Msa0106910-mRNA-1;_AED=0.11;_eAED=0.14;_QI=0|0|0|1|0.5|0.23|13|0|700 |
| chr1_3 | exon | 16714470 | 16714562 | 16714470 | ID=Msa0106910-mRNA-1:exon:6321;Parent=Msa0106910-mRNA-1 |
| chr1_3 | exon | 16713445 | 16713635 | 16713445 | ID=Msa0106910-mRNA-1:exon:6320;Parent=Msa0106910-mRNA-1 |
| chr1_3 | exon | 16713175 | 16713411 | 16713175 | ID=Msa0106910-mRNA-1:exon:6319;Parent=Msa0106910-mRNA-1 |
| chr1_3 | exon | 16712774 | 16712939 | 16712774 | ID=Msa0106910-mRNA-1:exon:6318;Parent=Msa0106910-mRNA-1 |
| chr1_3 | exon | 16712320 | 16712412 | 16712320 | ID=Msa0106910-mRNA-1:exon:6317;Parent=Msa0106910-mRNA-1 |
| chr1_3 | exon | 16712133 | 16712274 | 16712133 | ID=Msa0106910-mRNA-1:exon:6316;Parent=Msa0106910-mRNA-1 |
| chr1_3 | exon | 16711880 | 16711941 | 16711880 | ID=Msa0106910-mRNA-1:exon:6315;Parent=Msa0106910-mRNA-1 |
| chr1_3 | exon | 16711583 | 16711795 | 16711583 | ID=Msa0106910-mRNA-1:exon:6314;Parent=Msa0106910-mRNA-1 |
| chr1_3 | exon | 16710778 | 16710964 | 16710778 | ID=Msa0106910-mRNA-1:exon:6313;Parent=Msa0106910-mRNA-1 |
| chr1_3 | exon | 16710477 | 16710620 | 16710477 | ID=Msa0106910-mRNA-1:exon:6312;Parent=Msa0106910-mRNA-1 |
| chr1_3 | exon | 16710108 | 16710343 | 16710108 | ID=Msa0106910-mRNA-1:exon:6311;Parent=Msa0106910-mRNA-1 |
| chr1_3 | exon | 16709797 | 16710024 | 16709797 | ID=Msa0106910-mRNA-1:exon:6310;Parent=Msa0106910-mRNA-1 |
| chr1_3 | exon | 16708995 | 16709102 | 16708995 | ID=Msa0106910-mRNA-1:exon:6309;Parent=Msa0106910-mRNA-1 |
| chr1_3 | CDS | 16714470 | 16714562 | 16714470 | ID=Msa0106910-mRNA-1:cds;Parent=Msa0106910-mRNA-1 |
| chr1_3 | CDS | 16713445 | 16713635 | 16713445 | ID=Msa0106910-mRNA-1:cds;Parent=Msa0106910-mRNA-1 |
| chr1_3 | CDS | 16713175 | 16713411 | 16713175 | ID=Msa0106910-mRNA-1:cds;Parent=Msa0106910-mRNA-1 |
| chr1_3 | CDS | 16712774 | 16712939 | 16712774 | ID=Msa0106910-mRNA-1:cds;Parent=Msa0106910-mRNA-1 |
| chr1_3 | CDS | 16712320 | 16712412 | 16712320 | ID=Msa0106910-mRNA-1:cds;Parent=Msa0106910-mRNA-1 |
| chr1_3 | CDS | 16712133 | 16712274 | 16712133 | ID=Msa0106910-mRNA-1:cds;Parent=Msa0106910-mRNA-1 |
| chr1_3 | CDS | 16711880 | 16711941 | 16711880 | ID=Msa0106910-mRNA-1:cds;Parent=Msa0106910-mRNA-1 |
| chr1_3 | CDS | 16711583 | 16711795 | 16711583 | ID=Msa0106910-mRNA-1:cds;Parent=Msa0106910-mRNA-1 |
| chr1_3 | CDS | 16710778 | 16710964 | 16710778 | ID=Msa0106910-mRNA-1:cds;Parent=Msa0106910-mRNA-1 |
| chr1_3 | CDS | 16710477 | 16710620 | 16710477 | ID=Msa0106910-mRNA-1:cds;Parent=Msa0106910-mRNA-1 |
| chr1_3 | CDS | 16710108 | 16710343 | 16710108 | ID=Msa0106910-mRNA-1:cds;Parent=Msa0106910-mRNA-1 |
| chr1_3 | CDS | 16709797 | 16710024 | 16709797 | ID=Msa0106910-mRNA-1:cds;Parent=Msa0106910-mRNA-1 |
| chr1_3 | CDS | 16708995 | 16709102 | 16708995 | ID=Msa0106910-mRNA-1:cds;Parent=Msa0106910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
