Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106930 | KEH40807.1 | 79.953 | 429 | 42 | 3 | 1 | 400 | 1 | 414 | 0.0 | 687 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106930 | A0A072VG97 | 79.953 | 429 | 42 | 3 | 1 | 400 | 1 | 414 | 0.0 | 687 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0106930 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106930 | MtrunA17_Chr1g0163231 | 85.185 | 297 | 29 | 2 | 1 | 297 | 1 | 282 | 0.0 | 516 |
| Msa0106930 | MtrunA17_Chr1g0171611 | 80.808 | 297 | 30 | 2 | 1 | 297 | 1 | 270 | 7.72e-166 | 466 |
| Msa0106930 | MtrunA17_Chr1g0163201 | 46.154 | 403 | 164 | 11 | 24 | 398 | 18 | 395 | 1.96e-106 | 319 |
| Msa0106930 | MtrunA17_Chr1g0163181 | 40.969 | 454 | 182 | 11 | 1 | 394 | 1 | 428 | 9.77e-104 | 313 |
| Msa0106930 | MtrunA17_Chr1g0163261 | 49.701 | 334 | 123 | 9 | 1 | 321 | 1 | 302 | 1.30e-98 | 296 |
| Msa0106930 | MtrunA17_Chr1g0163251 | 45.994 | 337 | 143 | 10 | 1 | 328 | 1 | 307 | 1.39e-87 | 271 |
| Msa0106930 | MtrunA17_Chr1g0163151 | 40.909 | 242 | 113 | 8 | 161 | 394 | 1 | 220 | 3.78e-49 | 166 |
| Msa0106930 | MtrunA17_Chr1g0162151 | 42.623 | 244 | 104 | 9 | 161 | 400 | 1 | 212 | 2.45e-45 | 155 |
| Msa0106930 | MtrunA17_Chr1g0163241 | 60.156 | 128 | 46 | 3 | 24 | 147 | 22 | 148 | 4.59e-44 | 150 |
| Msa0106930 | MtrunA17_Chr1g0163111 | 39.300 | 257 | 113 | 10 | 161 | 399 | 1 | 232 | 2.86e-42 | 148 |
| Msa0106930 | MtrunA17_Chr1g0163191 | 56.098 | 123 | 50 | 1 | 1 | 123 | 1 | 119 | 2.18e-41 | 143 |
| Msa0106930 | MtrunA17_Chr6g0476171 | 35.659 | 258 | 133 | 8 | 154 | 394 | 3 | 244 | 1.30e-34 | 128 |
| Msa0106930 | MtrunA17_Chr7g0233561 | 30.476 | 315 | 172 | 10 | 6 | 292 | 15 | 310 | 2.80e-32 | 124 |
| Msa0106930 | MtrunA17_Chr3g0131891 | 28.116 | 345 | 195 | 12 | 6 | 326 | 16 | 331 | 1.45e-30 | 119 |
| Msa0106930 | MtrunA17_Chr1g0162161 | 42.177 | 147 | 64 | 4 | 25 | 156 | 4 | 144 | 1.45e-29 | 112 |
| Msa0106930 | MtrunA17_Chr1g0163131 | 27.362 | 307 | 191 | 8 | 5 | 293 | 14 | 306 | 7.65e-28 | 111 |
| Msa0106930 | MtrunA17_Chr1g0163131 | 53.409 | 88 | 41 | 0 | 310 | 397 | 221 | 308 | 1.48e-21 | 94.4 |
| Msa0106930 | MtrunA17_Chr1g0163101 | 37.572 | 173 | 86 | 6 | 2 | 156 | 3 | 171 | 7.36e-27 | 105 |
| Msa0106930 | MtrunA17_Chr1g0163121 | 39.860 | 143 | 72 | 4 | 20 | 156 | 6 | 140 | 3.37e-25 | 100 |
| Msa0106930 | MtrunA17_Chr1g0163091 | 43.262 | 141 | 59 | 5 | 161 | 298 | 1 | 123 | 2.79e-24 | 98.2 |
| Msa0106930 | MtrunA17_Chr7g0233531 | 28.819 | 288 | 157 | 10 | 25 | 292 | 2 | 261 | 1.22e-23 | 99.4 |
| Msa0106930 | MtrunA17_Chr1g0163141 | 34.969 | 163 | 76 | 4 | 23 | 156 | 9 | 170 | 3.02e-23 | 95.9 |
| Msa0106930 | MtrunA17_Chr8g0390841 | 24.012 | 329 | 181 | 8 | 2 | 292 | 32 | 329 | 7.77e-23 | 100 |
| Msa0106930 | MtrunA17_Chr7g0233521 | 28.179 | 291 | 155 | 12 | 25 | 292 | 2 | 261 | 2.86e-22 | 95.9 |
| Msa0106930 | MtrunA17_Chr7g0233541 | 27.273 | 319 | 181 | 10 | 25 | 315 | 2 | 297 | 5.92e-22 | 95.1 |
| Msa0106930 | MtrunA17_Chr1g0163081 | 48.315 | 89 | 45 | 1 | 25 | 113 | 6 | 93 | 7.14e-22 | 90.9 |
| Msa0106930 | MtrunA17_Chr6g0476181 | 38.312 | 154 | 72 | 6 | 25 | 156 | 2 | 154 | 2.34e-21 | 90.1 |
| Msa0106930 | MtrunA17_Chr7g0233571 | 32.386 | 176 | 109 | 4 | 6 | 176 | 7 | 177 | 2.59e-21 | 91.7 |
| Msa0106930 | MtrunA17_Chr4g0067431 | 25.625 | 320 | 192 | 13 | 9 | 299 | 15 | 317 | 4.54e-21 | 93.2 |
| Msa0106930 | MtrunA17_Chr1g0163221 | 24.938 | 405 | 230 | 16 | 9 | 396 | 11 | 358 | 5.87e-21 | 93.2 |
| Msa0106930 | MtrunA17_Chr5g0419201 | 32.164 | 171 | 109 | 3 | 3 | 166 | 10 | 180 | 2.69e-20 | 88.2 |
| Msa0106930 | MtrunA17_Chr3g0103171 | 24.820 | 278 | 182 | 8 | 24 | 292 | 5 | 264 | 4.48e-20 | 89.4 |
| Msa0106930 | MtrunA17_Chr6g0467351 | 36.986 | 146 | 85 | 3 | 9 | 151 | 15 | 156 | 8.11e-20 | 87.8 |
| Msa0106930 | MtrunA17_Chr1g0208771 | 25.000 | 308 | 161 | 9 | 24 | 292 | 12 | 288 | 1.20e-18 | 87.4 |
| Msa0106930 | MtrunA17_Chr3g0103181 | 24.742 | 291 | 194 | 10 | 6 | 292 | 9 | 278 | 1.93e-18 | 84.7 |
| Msa0106930 | MtrunA17_Chr3g0103151 | 34.722 | 144 | 83 | 4 | 6 | 146 | 9 | 144 | 3.70e-18 | 81.3 |
| Msa0106930 | MtrunA17_Chr3g0103191 | 34.058 | 138 | 86 | 3 | 6 | 140 | 9 | 144 | 9.53e-18 | 82.4 |
| Msa0106930 | MtrunA17_Chr1g0163161 | 35.606 | 132 | 70 | 5 | 37 | 156 | 1 | 129 | 1.03e-15 | 73.6 |
| Msa0106930 | MtrunA17_Chr1g0163071 | 22.956 | 318 | 173 | 9 | 25 | 298 | 2 | 291 | 1.17e-15 | 77.0 |
| Msa0106930 | MtrunA17_Chr1g0163061 | 37.000 | 100 | 60 | 2 | 9 | 105 | 15 | 114 | 6.85e-14 | 71.6 |
| Msa0106930 | MtrunA17_Chr1g0154131 | 25.271 | 277 | 174 | 10 | 22 | 280 | 195 | 456 | 3.69e-11 | 64.7 |
| Msa0106930 | MtrunA17_Chr4g0033961 | 36.364 | 99 | 61 | 1 | 9 | 105 | 6 | 104 | 3.92e-11 | 64.3 |
| Msa0106930 | MtrunA17_Chr1g0154161 | 24.746 | 295 | 175 | 11 | 5 | 280 | 29 | 295 | 6.72e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106930 | AT1G49475.1 | 33.051 | 118 | 70 | 5 | 9 | 123 | 34 | 145 | 7.41e-11 | 61.6 |
Find 71 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTGCAGATGACCCTTTA+AGG | 0.106528 | 1_3:+16787578 | None:intergenic |
| GTGCTCAACAGGAAATATTT+TGG | 0.162791 | 1_3:-16788509 | Msa0106930:CDS |
| AATATCTTAACCTTAAAATA+TGG | 0.178478 | 1_3:+16788387 | None:intergenic |
| TGCAGGTTGGCATAAATTTA+AGG | 0.202920 | 1_3:-16786495 | Msa0106930:CDS |
| GTTACAAACGTGAAACTTAA+AGG | 0.208866 | 1_3:-16787781 | Msa0106930:CDS |
| TTACGCTCATGGCTATATTT+TGG | 0.211055 | 1_3:-16787963 | Msa0106930:intron |
| ATATTTGGTTTAAGAGAAAT+TGG | 0.232188 | 1_3:-16788470 | Msa0106930:CDS |
| AGAAATTTGTGGAGAAATAT+TGG | 0.241294 | 1_3:-16788572 | Msa0106930:CDS |
| TTTGGGAGTCTAAGAATTAC+TGG | 0.267570 | 1_3:+16788534 | None:intergenic |
| TATTTGAATGACAACCTTAA+AGG | 0.276541 | 1_3:-16787592 | Msa0106930:CDS |
| AGTCTAAGAATTACTGGATT+TGG | 0.299817 | 1_3:+16788540 | None:intergenic |
| ATATTTCTCCACAAATTTCT+TGG | 0.318034 | 1_3:+16788575 | None:intergenic |
| ACTATCTTCAAGAACTCTTC+TGG | 0.329140 | 1_3:+16788827 | None:intergenic |
| TGGAGCGTGACGGTGATATT+TGG | 0.333381 | 1_3:-16788485 | Msa0106930:CDS |
| AACTTCACCTCCACTTTCAT+AGG | 0.353581 | 1_3:+16787535 | None:intergenic |
| TAATAGGCCAAATACCTTCC+TGG | 0.365878 | 1_3:+16787756 | None:intergenic |
| ACAAAGGAGGCATAATTAAG+AGG | 0.367124 | 1_3:-16788060 | Msa0106930:CDS |
| ATTTCCTGTTGAGCACCATT+TGG | 0.373513 | 1_3:+16788516 | None:intergenic |
| ATTTGAATGACAACCTTAAA+GGG | 0.391511 | 1_3:-16787591 | Msa0106930:CDS |
| TCGAAATCATGAACTACATA+AGG | 0.397577 | 1_3:-16788804 | Msa0106930:CDS |
| ACTCCCAAATGGTGCTCAAC+AGG | 0.399322 | 1_3:-16788520 | Msa0106930:CDS |
| TATTTCTCCACAAATTTCTT+GGG | 0.405795 | 1_3:+16788576 | None:intergenic |
| TTTCCTGTTGAGCACCATTT+GGG | 0.415520 | 1_3:+16788517 | None:intergenic |
| TCATCTGCAAGCATTAGATT+TGG | 0.416468 | 1_3:-16787568 | Msa0106930:CDS |
| AAATTCGTGCAGTTCACAAA+TGG | 0.417597 | 1_3:-16786572 | Msa0106930:CDS |
| GAAGATTGCGGATTGAAGAT+TGG | 0.417689 | 1_3:-16786473 | Msa0106930:CDS |
| GACAATTCAAGTTCAAAACT+TGG | 0.430631 | 1_3:+16787992 | None:intergenic |
| AATTCGTGCAGTTCACAAAT+GGG | 0.433283 | 1_3:-16786571 | Msa0106930:CDS |
| ATTAATCAGCAAAGAATCTC+TGG | 0.443135 | 1_3:-16788210 | Msa0106930:intron |
| ATATCTTAACCTTAAAATAT+GGG | 0.446492 | 1_3:+16788388 | None:intergenic |
| ACACGAATCTCGATTGTGTT+CGG | 0.462954 | 1_3:+16786740 | None:intergenic |
| AATATTATGAGAGAACTTGT+AGG | 0.465524 | 1_3:-16786523 | Msa0106930:CDS |
| GAGAGTTCCCAAGAAATTTG+TGG | 0.469633 | 1_3:-16788583 | Msa0106930:CDS |
| TTTGCAAAGTCTCTAAAAGA+TGG | 0.473533 | 1_3:-16788441 | Msa0106930:CDS |
| TTTGGCTTGGGTGATAGTTA+TGG | 0.473644 | 1_3:+16787384 | None:intergenic |
| TGTGTTTCAGCAGACTTAGA+AGG | 0.481816 | 1_3:-16786779 | Msa0106930:intron |
| AATAGGCCAAATACCTTCCT+GGG | 0.487611 | 1_3:+16787757 | None:intergenic |
| TATTTGGTTTAAGAGAAATT+GGG | 0.491470 | 1_3:-16788469 | Msa0106930:CDS |
| GATATTTGGTCACAATACAT+TGG | 0.502848 | 1_3:-16788370 | Msa0106930:CDS |
| CGAAATCATGAACTACATAA+GGG | 0.505471 | 1_3:-16788803 | Msa0106930:CDS |
| AGAACTTGTAGGTTCTATGC+AGG | 0.508431 | 1_3:-16786512 | Msa0106930:CDS |
| GTTTCACGTTTGTAACAGAT+AGG | 0.513141 | 1_3:+16787788 | None:intergenic |
| AGAACATGCATTGTCACCTC+TGG | 0.519227 | 1_3:-16787493 | Msa0106930:CDS |
| CATAAATTTAAGGAAGATTG+CGG | 0.529511 | 1_3:-16786485 | Msa0106930:CDS |
| CTTGTAGGTTCTATGCAGGT+TGG | 0.536785 | 1_3:-16786508 | Msa0106930:CDS |
| TTCATAGATGAAAGTTGTGA+AGG | 0.538273 | 1_3:-16788324 | Msa0106930:CDS |
| CAAAGGAGGCATAATTAAGA+GGG | 0.540734 | 1_3:-16788059 | Msa0106930:CDS |
| ATAGTTATGGTGAATGAAAG+TGG | 0.542900 | 1_3:+16787397 | None:intergenic |
| GTAATTCTTAGACTCCCAAA+TGG | 0.561023 | 1_3:-16788531 | Msa0106930:CDS |
| AACTTTGCAGGTAGGAACAA+AGG | 0.563812 | 1_3:-16788076 | Msa0106930:intron |
| GATGGCAATGTTAATAGTGC+TGG | 0.575875 | 1_3:-16788267 | Msa0106930:CDS |
| TTGTCACAATCTTACGCTCA+TGG | 0.577647 | 1_3:-16787974 | Msa0106930:CDS |
| GGCAAATGGCTTCCAACCAG+AGG | 0.587307 | 1_3:+16787477 | None:intergenic |
| CATGCATTGTCACCTCTGGT+TGG | 0.594204 | 1_3:-16787489 | Msa0106930:CDS |
| TATGCTCTTGAAAAGTCACT+TGG | 0.596669 | 1_3:+16787613 | None:intergenic |
| AAGAGACATAAAGAGTGTCA+TGG | 0.604494 | 1_3:-16786596 | Msa0106930:CDS |
| TGAGAACATGCCTATGAAAG+TGG | 0.608998 | 1_3:-16787545 | Msa0106930:CDS |
| ACTTAGAAGGTGGTAATGCG+AGG | 0.619480 | 1_3:-16786766 | Msa0106930:CDS |
| TTCGTGCAGTTCACAAATGG+GGG | 0.622353 | 1_3:-16786569 | Msa0106930:CDS |
| ATTCGTGCAGTTCACAAATG+GGG | 0.622898 | 1_3:-16786570 | Msa0106930:CDS |
| GTTTCAGCAGACTTAGAAGG+TGG | 0.625758 | 1_3:-16786776 | Msa0106930:intron |
| ATAGTGCTGGCACATCTCAA+AGG | 0.625943 | 1_3:-16788254 | Msa0106930:CDS |
| CTTAGAAGGTGGTAATGCGA+GGG | 0.643834 | 1_3:-16786765 | Msa0106930:CDS |
| GAAACTTAAAGGACCCAGGA+AGG | 0.645807 | 1_3:-16787770 | Msa0106930:intron |
| TCGTGTGAACTCTACTTACC+CGG | 0.650490 | 1_3:-16786723 | Msa0106930:intron |
| ATAACTATCACCCAAGCCAA+AGG | 0.651162 | 1_3:-16787382 | Msa0106930:intron |
| GCAGAACAAACAACTAGTGG+TGG | 0.662011 | 1_3:+16786381 | None:intergenic |
| ACGTGAAACTTAAAGGACCC+AGG | 0.666526 | 1_3:-16787774 | Msa0106930:CDS |
| GAAGTTGTTGAACTGAGTGA+TGG | 0.670925 | 1_3:-16788285 | Msa0106930:CDS |
| TTTGCAGGTAGGAACAAAGG+AGG | 0.713031 | 1_3:-16788073 | Msa0106930:intron |
| GAACATGCCTATGAAAGTGG+AGG | 0.736568 | 1_3:-16787542 | Msa0106930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAATAAAATAAAATTACA+AGG | + | chr1_3:16787096-16787115 | None:intergenic | 10.0% |
| !!! | TGTAATTTTATTTTATTTTG+AGG | - | chr1_3:16787096-16787115 | Msa0106930:intron | 10.0% |
| !!! | AAATAATTTGTAATATATGA+GGG | + | chr1_3:16788276-16788295 | None:intergenic | 10.0% |
| !!! | TAAATAATTTGTAATATATG+AGG | + | chr1_3:16788277-16788296 | None:intergenic | 10.0% |
| !! | ACAAATTATTTAATATTTCA+AGG | - | chr1_3:16788285-16788304 | Msa0106930:CDS | 10.0% |
| !! | ATTATTAACAAATGTATAGT+TGG | + | chr1_3:16786555-16786574 | None:intergenic | 15.0% |
| !! | ACAATAATCATTTATGAATA+AGG | + | chr1_3:16786625-16786644 | None:intergenic | 15.0% |
| !! | ATATCTTAACCTTAAAATAT+GGG | + | chr1_3:16786851-16786870 | None:intergenic | 15.0% |
| !! | AATATCTTAACCTTAAAATA+TGG | + | chr1_3:16786852-16786871 | None:intergenic | 15.0% |
| !!! | TATTTTAAGGTTAAGATATT+TGG | - | chr1_3:16786852-16786871 | Msa0106930:intron | 15.0% |
| !!! | TTCATCTATGAATTTTATAT+TGG | + | chr1_3:16786904-16786923 | None:intergenic | 15.0% |
| !!! | TAAGTATAATGTTTTATAGT+AGG | + | chr1_3:16787303-16787322 | None:intergenic | 15.0% |
| !!! | AAAAAAGTTACTAGTAATTT+TGG | - | chr1_3:16787555-16787574 | Msa0106930:CDS | 15.0% |
| !!! | AACTTGTAAGTTATATTTTT+TGG | + | chr1_3:16787783-16787802 | None:intergenic | 15.0% |
| !! | AAAAAATATAACTTACAAGT+TGG | - | chr1_3:16787782-16787801 | Msa0106930:CDS | 15.0% |
| !!! | CTTTTTTAAATAAAGTTTGA+AGG | + | chr1_3:16787885-16787904 | None:intergenic | 15.0% |
| !!! | ATTTTTCAGAGATTTTAAAT+TGG | - | chr1_3:16788092-16788111 | Msa0106930:intron | 15.0% |
| !!! | ATAAAATTTAAAACAGAACT+TGG | + | chr1_3:16788216-16788235 | None:intergenic | 15.0% |
| !!! | ATATTTGGTTTAAGAGAAAT+TGG | - | chr1_3:16786766-16786785 | Msa0106930:CDS | 20.0% |
| !!! | TATTTGGTTTAAGAGAAATT+GGG | - | chr1_3:16786767-16786786 | Msa0106930:CDS | 20.0% |
| !!! | GCTTTAGTTTTCAAATATTT+AGG | - | chr1_3:16786822-16786841 | Msa0106930:intron | 20.0% |
| !!! | TTAGTTTTCAAATATTTAGG+TGG | - | chr1_3:16786825-16786844 | Msa0106930:intron | 20.0% |
| !!! | ATCTATTTTAGCCATTTATA+AGG | + | chr1_3:16787129-16787148 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTTTTAACTTTGC+AGG | - | chr1_3:16787148-16787167 | Msa0106930:intron | 20.0% |
| !! | TGAAATAGCCAATAAATAAT+AGG | + | chr1_3:16787499-16787518 | None:intergenic | 20.0% |
| !!! | AAGTTATATTTTTTGGCAAA+TGG | + | chr1_3:16787776-16787795 | None:intergenic | 20.0% |
| !! | CAATTGATATTAAGCAAATT+TGG | + | chr1_3:16787934-16787953 | None:intergenic | 20.0% |
| !! | TCTATTGTGATGATAATATT+TGG | - | chr1_3:16788000-16788019 | Msa0106930:CDS | 20.0% |
| !!! | TAACTAAGTTTTCTTACTTT+AGG | - | chr1_3:16788163-16788182 | Msa0106930:intron | 20.0% |
| !!! | CTTGAACTAGTTTTTTTAAT+TGG | + | chr1_3:16788313-16788332 | None:intergenic | 20.0% |
| !! | GATTGTGATTTGTAATTGAA+AGG | + | chr1_3:16786533-16786552 | None:intergenic | 25.0% |
| ! | TATTTCTCCACAAATTTCTT+GGG | + | chr1_3:16786663-16786682 | None:intergenic | 25.0% |
| ! | ATATTTCTCCACAAATTTCT+TGG | + | chr1_3:16786664-16786683 | None:intergenic | 25.0% |
| ! | AGAAATTTGTGGAGAAATAT+TGG | - | chr1_3:16786664-16786683 | Msa0106930:intron | 25.0% |
| !!! | AAGTTTCTAAGGTTTTAGAT+AGG | + | chr1_3:16787393-16787412 | None:intergenic | 25.0% |
| !! | ATAGGTCATTTAAGTTTCTA+AGG | + | chr1_3:16787404-16787423 | None:intergenic | 25.0% |
| ! | AAGTTTCAAAGGTTACATAT+AGG | + | chr1_3:16787422-16787441 | None:intergenic | 25.0% |
| !!! | ATGTAACCTTTGAAACTTAA+AGG | - | chr1_3:16787424-16787443 | Msa0106930:CDS | 25.0% |
| ! | GTATTTGGCCTATTATTTAT+TGG | - | chr1_3:16787488-16787507 | Msa0106930:CDS | 25.0% |
| ! | TAAACCTTGAATTGAAATAG+AGG | - | chr1_3:16787597-16787616 | Msa0106930:CDS | 25.0% |
| ! | TATTTGAATGACAACCTTAA+AGG | - | chr1_3:16787644-16787663 | Msa0106930:intron | 25.0% |
| ! | ATTTGAATGACAACCTTAAA+GGG | - | chr1_3:16787645-16787664 | Msa0106930:intron | 25.0% |
| ! | GATAATATTTGGAAGAAAAG+AGG | - | chr1_3:16788011-16788030 | Msa0106930:CDS | 25.0% |
| ! | TTTAACATAAGTAATCCTAC+CGG | + | chr1_3:16788535-16788554 | None:intergenic | 25.0% |
| ! | AGGATTACTTATGTTAAATG+TGG | - | chr1_3:16788537-16788556 | Msa0106930:CDS | 25.0% |
| !! | TCATAATATTGCACTTTTAC+AGG | + | chr1_3:16788703-16788722 | None:intergenic | 25.0% |
| ! | AATATTATGAGAGAACTTGT+AGG | - | chr1_3:16788713-16788732 | Msa0106930:intron | 25.0% |
| ! | CATAAATTTAAGGAAGATTG+CGG | - | chr1_3:16788751-16788770 | Msa0106930:intron | 25.0% |
| TCGAAATCATGAACTACATA+AGG | - | chr1_3:16786432-16786451 | Msa0106930:CDS | 30.0% | |
| CGAAATCATGAACTACATAA+GGG | - | chr1_3:16786433-16786452 | Msa0106930:CDS | 30.0% | |
| ATAAGGATATGTAATGCAAC+AGG | + | chr1_3:16786608-16786627 | None:intergenic | 30.0% | |
| AGTCTAAGAATTACTGGATT+TGG | + | chr1_3:16786699-16786718 | None:intergenic | 30.0% | |
| ! | TGCTCAACAGGAAATATTTT+GGG | - | chr1_3:16786728-16786747 | Msa0106930:CDS | 30.0% |
| ! | TTTGCAAAGTCTCTAAAAGA+TGG | - | chr1_3:16786795-16786814 | Msa0106930:intron | 30.0% |
| GATATTTGGTCACAATACAT+TGG | - | chr1_3:16786866-16786885 | Msa0106930:intron | 30.0% | |
| TTCATAGATGAAAGTTGTGA+AGG | - | chr1_3:16786912-16786931 | Msa0106930:intron | 30.0% | |
| ATTAATCAGCAAAGAATCTC+TGG | - | chr1_3:16787026-16787045 | Msa0106930:intron | 30.0% | |
| ! | GAGGTATTCTACCTTATAAA+TGG | - | chr1_3:16787115-16787134 | Msa0106930:intron | 30.0% |
| !!! | TGTTTTTTAACTTTGCAGGT+AGG | - | chr1_3:16787152-16787171 | Msa0106930:intron | 30.0% |
| ! | GACAATTCAAGTTCAAAACT+TGG | + | chr1_3:16787247-16787266 | None:intergenic | 30.0% |
| ! | ATAGGTCCTTTAAGTTTCAA+AGG | + | chr1_3:16787433-16787452 | None:intergenic | 30.0% |
| GTTACAAACGTGAAACTTAA+AGG | - | chr1_3:16787455-16787474 | Msa0106930:CDS | 30.0% | |
| GTATCCTCTATTTCAATTCA+AGG | + | chr1_3:16787604-16787623 | None:intergenic | 30.0% | |
| ATAGTTATGGTGAATGAAAG+TGG | + | chr1_3:16787842-16787861 | None:intergenic | 30.0% | |
| AAGTTTGAAGGAAAAACCTT+TGG | + | chr1_3:16787873-16787892 | None:intergenic | 30.0% | |
| TTGTCATTGTTCAAAGGAAT+TGG | + | chr1_3:16787964-16787983 | None:intergenic | 30.0% | |
| AATTCCTTTGAACAATGACA+AGG | - | chr1_3:16787963-16787982 | Msa0106930:intron | 30.0% | |
| ATAACCTTGTCATTGTTCAA+AGG | + | chr1_3:16787970-16787989 | None:intergenic | 30.0% | |
| ATTTGTAATATATGAGGGAG+AGG | + | chr1_3:16788271-16788290 | None:intergenic | 30.0% | |
| TTAACATAAGTAATCCTACC+GGG | + | chr1_3:16788534-16788553 | None:intergenic | 30.0% | |
| ACTATCTTCAAGAACTCTTC+TGG | + | chr1_3:16786412-16786431 | None:intergenic | 35.0% | |
| TTTGGGAGTCTAAGAATTAC+TGG | + | chr1_3:16786705-16786724 | None:intergenic | 35.0% | |
| GTAATTCTTAGACTCCCAAA+TGG | - | chr1_3:16786705-16786724 | Msa0106930:intron | 35.0% | |
| ! | GTGCTCAACAGGAAATATTT+TGG | - | chr1_3:16786727-16786746 | Msa0106930:CDS | 35.0% |
| !! | TCAACAGGAAATATTTTGGG+TGG | - | chr1_3:16786731-16786750 | Msa0106930:CDS | 35.0% |
| ! | TTTAGGTGGCCCATATTTTA+AGG | - | chr1_3:16786839-16786858 | Msa0106930:intron | 35.0% |
| ACATCTCAAAGGAGAAAAAG+TGG | - | chr1_3:16786993-16787012 | Msa0106930:intron | 35.0% | |
| ! | ACAAAGGAGGCATAATTAAG+AGG | - | chr1_3:16787176-16787195 | Msa0106930:intron | 35.0% |
| ! | CAAAGGAGGCATAATTAAGA+GGG | - | chr1_3:16787177-16787196 | Msa0106930:intron | 35.0% |
| ! | TTACGCTCATGGCTATATTT+TGG | - | chr1_3:16787273-16787292 | Msa0106930:intron | 35.0% |
| !! | GTTTCGAGTTTGTTTCAGAT+AGG | - | chr1_3:16787341-16787360 | Msa0106930:intron | 35.0% |
| !!! | GGTTTTAGATAGGTCCTTAA+CGG | + | chr1_3:16787383-16787402 | None:intergenic | 35.0% |
| GTTTCACGTTTGTAACAGAT+AGG | + | chr1_3:16787451-16787470 | None:intergenic | 35.0% | |
| TATGCTCTTGAAAAGTCACT+TGG | + | chr1_3:16787626-16787645 | None:intergenic | 35.0% | |
| TCATCTGCAAGCATTAGATT+TGG | - | chr1_3:16787668-16787687 | Msa0106930:intron | 35.0% | |
| GAACAATGACAAGGTTATGA+AGG | - | chr1_3:16787972-16787991 | Msa0106930:CDS | 35.0% | |
| CATATATACTCGAGAGATCA+TGG | + | chr1_3:16788061-16788080 | None:intergenic | 35.0% | |
| !! | AAGAGACATAAAGAGTGTCA+TGG | - | chr1_3:16788640-16788659 | Msa0106930:intron | 35.0% |
| AAATTCGTGCAGTTCACAAA+TGG | - | chr1_3:16788664-16788683 | Msa0106930:intron | 35.0% | |
| AATTCGTGCAGTTCACAAAT+GGG | - | chr1_3:16788665-16788684 | Msa0106930:intron | 35.0% | |
| ! | TGCAGGTTGGCATAAATTTA+AGG | - | chr1_3:16788741-16788760 | Msa0106930:intron | 35.0% |
| GAGAGTTCCCAAGAAATTTG+TGG | - | chr1_3:16786653-16786672 | Msa0106930:intron | 40.0% | |
| TTTCCTGTTGAGCACCATTT+GGG | + | chr1_3:16786722-16786741 | None:intergenic | 40.0% | |
| ATTTCCTGTTGAGCACCATT+TGG | + | chr1_3:16786723-16786742 | None:intergenic | 40.0% | |
| GAAGTTGTTGAACTGAGTGA+TGG | - | chr1_3:16786951-16786970 | Msa0106930:intron | 40.0% | |
| GATGGCAATGTTAATAGTGC+TGG | - | chr1_3:16786969-16786988 | Msa0106930:intron | 40.0% | |
| AACTTTGCAGGTAGGAACAA+AGG | - | chr1_3:16787160-16787179 | Msa0106930:intron | 40.0% | |
| TTGTCACAATCTTACGCTCA+TGG | - | chr1_3:16787262-16787281 | Msa0106930:intron | 40.0% | |
| !! | CTTAACGGAGGTTGATAGAA+AGG | + | chr1_3:16787368-16787387 | None:intergenic | 40.0% |
| CTTTCTATCAACCTCCGTTA+AGG | - | chr1_3:16787366-16787385 | Msa0106930:intron | 40.0% | |
| TTTAGATAGGTCCTTAACGG+AGG | + | chr1_3:16787380-16787399 | None:intergenic | 40.0% | |
| AATAGGCCAAATACCTTCCT+GGG | + | chr1_3:16787482-16787501 | None:intergenic | 40.0% | |
| TAATAGGCCAAATACCTTCC+TGG | + | chr1_3:16787483-16787502 | None:intergenic | 40.0% | |
| TGAGAACATGCCTATGAAAG+TGG | - | chr1_3:16787691-16787710 | Msa0106930:intron | 40.0% | |
| AACTTCACCTCCACTTTCAT+AGG | + | chr1_3:16787704-16787723 | None:intergenic | 40.0% | |
| !! | TTTGGCTTGGGTGATAGTTA+TGG | + | chr1_3:16787855-16787874 | None:intergenic | 40.0% |
| ATAACTATCACCCAAGCCAA+AGG | - | chr1_3:16787854-16787873 | Msa0106930:intron | 40.0% | |
| ! | GAAGGAAAAACCTTTGGCTT+GGG | + | chr1_3:16787867-16787886 | None:intergenic | 40.0% |
| TGAAGGAAAAACCTTTGGCT+TGG | + | chr1_3:16787868-16787887 | None:intergenic | 40.0% | |
| !! | TGGAAGAAAAGAGGCATTGA+AGG | - | chr1_3:16788020-16788039 | Msa0106930:CDS | 40.0% |
| TGTGTTTCAGCAGACTTAGA+AGG | - | chr1_3:16788457-16788476 | Msa0106930:CDS | 40.0% | |
| ACACGAATCTCGATTGTGTT+CGG | + | chr1_3:16788499-16788518 | None:intergenic | 40.0% | |
| ATTCGTGCAGTTCACAAATG+GGG | - | chr1_3:16788666-16788685 | Msa0106930:intron | 40.0% | |
| TCACAAATGGGGGAAAATCA+TGG | - | chr1_3:16788677-16788696 | Msa0106930:intron | 40.0% | |
| AGAACTTGTAGGTTCTATGC+AGG | - | chr1_3:16788724-16788743 | Msa0106930:intron | 40.0% | |
| ! | GAAGATTGCGGATTGAAGAT+TGG | - | chr1_3:16788763-16788782 | Msa0106930:intron | 40.0% |
| !! | ATATTTTGGGTGGAGCGTGA+CGG | - | chr1_3:16786741-16786760 | Msa0106930:CDS | 45.0% |
| !! | ATAGTGCTGGCACATCTCAA+AGG | - | chr1_3:16786982-16787001 | Msa0106930:intron | 45.0% |
| TTTGCAGGTAGGAACAAAGG+AGG | - | chr1_3:16787163-16787182 | Msa0106930:intron | 45.0% | |
| ACGTGAAACTTAAAGGACCC+AGG | - | chr1_3:16787462-16787481 | Msa0106930:CDS | 45.0% | |
| GAAACTTAAAGGACCCAGGA+AGG | - | chr1_3:16787466-16787485 | Msa0106930:CDS | 45.0% | |
| !! | AAAGGACCCAGGAAGGTATT+TGG | - | chr1_3:16787473-16787492 | Msa0106930:CDS | 45.0% |
| TGCTTGCAGATGACCCTTTA+AGG | + | chr1_3:16787661-16787680 | None:intergenic | 45.0% | |
| GAACATGCCTATGAAAGTGG+AGG | - | chr1_3:16787694-16787713 | Msa0106930:intron | 45.0% | |
| AGAACATGCATTGTCACCTC+TGG | - | chr1_3:16787743-16787762 | Msa0106930:intron | 45.0% | |
| !! | GAGGCATTGAAGGAAGTTCA+AGG | - | chr1_3:16788030-16788049 | Msa0106930:CDS | 45.0% |
| GTTTCAGCAGACTTAGAAGG+TGG | - | chr1_3:16788460-16788479 | Msa0106930:CDS | 45.0% | |
| ! | ACTTAGAAGGTGGTAATGCG+AGG | - | chr1_3:16788470-16788489 | Msa0106930:CDS | 45.0% |
| ! | CTTAGAAGGTGGTAATGCGA+GGG | - | chr1_3:16788471-16788490 | Msa0106930:CDS | 45.0% |
| TCGTGTGAACTCTACTTACC+CGG | - | chr1_3:16788513-16788532 | Msa0106930:CDS | 45.0% | |
| TTCGTGCAGTTCACAAATGG+GGG | - | chr1_3:16788667-16788686 | Msa0106930:intron | 45.0% | |
| CTTGTAGGTTCTATGCAGGT+TGG | - | chr1_3:16788728-16788747 | Msa0106930:intron | 45.0% | |
| ACTCCCAAATGGTGCTCAAC+AGG | - | chr1_3:16786716-16786735 | Msa0106930:intron | 50.0% | |
| TGGAGCGTGACGGTGATATT+TGG | - | chr1_3:16786751-16786770 | Msa0106930:CDS | 50.0% | |
| CATGCATTGTCACCTCTGGT+TGG | - | chr1_3:16787747-16787766 | Msa0106930:intron | 50.0% | |
| GTGAACTCTACTTACCCGGT+AGG | - | chr1_3:16788517-16788536 | Msa0106930:CDS | 50.0% | |
| GGCAAATGGCTTCCAACCAG+AGG | + | chr1_3:16787762-16787781 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 16786394 | 16788864 | 16786394 | ID=Msa0106930;Name=Msa0106930 |
| chr1_3 | mRNA | 16786394 | 16788864 | 16786394 | ID=Msa0106930-mRNA-1;Parent=Msa0106930;Name=Msa0106930-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|0.85|1|1|7|0|400 |
| chr1_3 | exon | 16788796 | 16788864 | 16788796 | ID=Msa0106930-mRNA-1:exon:6308;Parent=Msa0106930-mRNA-1 |
| chr1_3 | exon | 16788211 | 16788604 | 16788211 | ID=Msa0106930-mRNA-1:exon:6307;Parent=Msa0106930-mRNA-1 |
| chr1_3 | exon | 16787964 | 16788088 | 16787964 | ID=Msa0106930-mRNA-1:exon:6306;Parent=Msa0106930-mRNA-1 |
| chr1_3 | exon | 16787771 | 16787812 | 16787771 | ID=Msa0106930-mRNA-1:exon:6305;Parent=Msa0106930-mRNA-1 |
| chr1_3 | exon | 16787383 | 16787641 | 16787383 | ID=Msa0106930-mRNA-1:exon:6304;Parent=Msa0106930-mRNA-1 |
| chr1_3 | exon | 16786724 | 16786791 | 16786724 | ID=Msa0106930-mRNA-1:exon:6303;Parent=Msa0106930-mRNA-1 |
| chr1_3 | exon | 16786394 | 16786639 | 16786394 | ID=Msa0106930-mRNA-1:exon:6302;Parent=Msa0106930-mRNA-1 |
| chr1_3 | CDS | 16788796 | 16788864 | 16788796 | ID=Msa0106930-mRNA-1:cds;Parent=Msa0106930-mRNA-1 |
| chr1_3 | CDS | 16788211 | 16788604 | 16788211 | ID=Msa0106930-mRNA-1:cds;Parent=Msa0106930-mRNA-1 |
| chr1_3 | CDS | 16787964 | 16788088 | 16787964 | ID=Msa0106930-mRNA-1:cds;Parent=Msa0106930-mRNA-1 |
| chr1_3 | CDS | 16787771 | 16787812 | 16787771 | ID=Msa0106930-mRNA-1:cds;Parent=Msa0106930-mRNA-1 |
| chr1_3 | CDS | 16787383 | 16787641 | 16787383 | ID=Msa0106930-mRNA-1:cds;Parent=Msa0106930-mRNA-1 |
| chr1_3 | CDS | 16786724 | 16786791 | 16786724 | ID=Msa0106930-mRNA-1:cds;Parent=Msa0106930-mRNA-1 |
| chr1_3 | CDS | 16786394 | 16786639 | 16786394 | ID=Msa0106930-mRNA-1:cds;Parent=Msa0106930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
