AlfalfaGEDB | Msa0106940

M. sativa cultivar zhongmu-4 / Msa0106940

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0106940	XP_039686025.1	34.201	269	151	8	494	741	198	461	4.96e-25	123
Msa0106940	XP_039686025.1	41.322	242	73	7	567	741	51	290	2.52e-28	133
Msa0106940	XP_039686025.1	47.851	349	148	9	87	432	243	560	7.55e-76	270
Msa0106940	XP_039686025.1	49.254	134	60	5	777	905	432	562	1.00e-20	110
Msa0106940	XP_039686025.1	78.743	541	51	5	56	536	18	554	0.0	818

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0106940	A0A072VHA4	56.315	483	74	9	530	905	13	465	2.07e-147	453
Msa0106940	A0A072VHA4	57.143	140	59	1	305	444	152	290	1.19e-39	164
Msa0106940	A0A072VHA4	60.411	341	95	8	1	313	1	329	1.15e-119	381

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TFs/TRs:

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Gene ID	Type	Classification
Msa0106940	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0106940	MtrunA17_Chr1g0163251	58.684	380	59	5	530	811	13	392	6.77e-127	388
Msa0106940	MtrunA17_Chr1g0163251	60.411	341	95	8	1	313	1	329	1.38e-124	382
Msa0106940	MtrunA17_Chr1g0163251	57.143	140	59	1	305	444	152	290	3.51e-44	165
Msa0106940	MtrunA17_Chr1g0163181	44.206	466	190	11	1	433	1	429	6.99e-110	345
Msa0106940	MtrunA17_Chr1g0163181	46.743	261	106	3	303	536	168	422	3.59e-67	231
Msa0106940	MtrunA17_Chr1g0163181	33.956	321	101	6	530	740	13	332	3.28e-44	166
Msa0106940	MtrunA17_Chr1g0163201	55.674	282	93	6	20	273	18	295	1.15e-88	288
Msa0106940	MtrunA17_Chr1g0163201	58.036	224	89	3	315	536	165	385	2.90e-76	254
Msa0106940	MtrunA17_Chr1g0163201	35.252	278	76	4	537	710	18	295	2.65e-38	148
Msa0106940	MtrunA17_Chr1g0163201	71.053	76	22	0	830	905	318	393	1.06e-27	116

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Find 152 sgRNAs with CRISPR-Local

Find 636 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTGTGGAGTTGAAAA+TGG	0.282812	1_3:+16825132	Msa0106940:CDS
AAACTCTCTGGAATTGAAAA+TGG	0.167608	1_3:+16818717	Msa0106940:CDS
AAAGAAGGAGTTGAAGTGAG+TGG	0.599535	1_3:+16814931	Msa0106940:CDS
AAAGAAGGGACCTCTTCTTG+TGG	0.632268	1_3:+16816568	Msa0106940:CDS
AAAGAATGCAAAGTGGAGAT+TGG	0.446068	1_3:+16818823	Msa0106940:CDS
AAAGAATGTAAAGTGAAAAT+TGG	0.268721	1_3:+16825238	Msa0106940:CDS
AAAGTTCTCCACATACTTCT+TGG	0.303447	1_3:-16814644	None:intergenic
AAATACCCACCCAAGCTCAA+AGG	0.617745	1_3:+16814983	Msa0106940:CDS
AAATTTCTCCACATATTTCT+TGG	0.293817	1_3:-16821206	None:intergenic
AAATTTGTGGAGTTGAAAAT+GGG	0.407272	1_3:+16825133	Msa0106940:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCAAACACACATAAATGAAA+CGG	-	chr1_3:16814577-16814596	None:intergenic	30.0%
GAGAAAAAATAGTGTGGATT+TGG	+	chr1_3:16815023-16815042	Msa0106940:CDS	30.0%
ATCCTATAGCAAGAAAGAAA+AGG	-	chr1_3:16815125-16815144	None:intergenic	30.0%
AAATTGTAATATACTCCCTC+CGG	-	chr1_3:16815317-16815336	None:intergenic	30.0%
ATGCAAAAATGGATAAGCTT+AGG	-	chr1_3:16815628-16815647	None:intergenic	30.0%
CGTAAAATTGTGATACTTAG+GGG	+	chr1_3:16815746-16815765	Msa0106940:intron	30.0%
GTAAAATTGTGATACTTAGG+GGG	+	chr1_3:16815747-16815766	Msa0106940:intron	30.0%
CTTTCATTAACAACTTCAAC+TGG	-	chr1_3:16815958-16815977	None:intergenic	30.0%
GTTGAAGTTGTTAATGAAAG+TGG	+	chr1_3:16815958-16815977	Msa0106940:intron	30.0%
GGCAATGTAACATCAAAAAA+GGG	-	chr1_3:16815997-16816016	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	16814467	16825327	16814467	ID=Msa0106940;Name=Msa0106940
chr1_3	mRNA	16814467	16825327	16814467	ID=Msa0106940-mRNA-1;Parent=Msa0106940;Name=Msa0106940-mRNA-1;_AED=0.18;_eAED=0.20;_QI=0\|0.23\|0.16\|1\|0.58\|0.55\|18\|0\|905
chr1_3	exon	16814467	16814523	16814467	ID=Msa0106940-mRNA-1:exon:6328;Parent=Msa0106940-mRNA-1
chr1_3	exon	16814637	16814799	16814637	ID=Msa0106940-mRNA-1:exon:6329;Parent=Msa0106940-mRNA-1
chr1_3	exon	16814827	16815069	16814827	ID=Msa0106940-mRNA-1:exon:6330;Parent=Msa0106940-mRNA-1
chr1_3	exon	16815959	16816044	16815959	ID=Msa0106940-mRNA-1:exon:6331;Parent=Msa0106940-mRNA-1
chr1_3	exon	16816175	16816454	16816175	ID=Msa0106940-mRNA-1:exon:6332;Parent=Msa0106940-mRNA-1
chr1_3	exon	16816563	16816658	16816563	ID=Msa0106940-mRNA-1:exon:6333;Parent=Msa0106940-mRNA-1
chr1_3	exon	16817334	16817470	16817334	ID=Msa0106940-mRNA-1:exon:6334;Parent=Msa0106940-mRNA-1
chr1_3	exon	16817591	16817870	16817591	ID=Msa0106940-mRNA-1:exon:6335;Parent=Msa0106940-mRNA-1
chr1_3	exon	16818524	16818582	16818524	ID=Msa0106940-mRNA-1:exon:6336;Parent=Msa0106940-mRNA-1
chr1_3	exon	16818679	16818885	16818679	ID=Msa0106940-mRNA-1:exon:6337;Parent=Msa0106940-mRNA-1
chr1_3	exon	16821199	16821294	16821199	ID=Msa0106940-mRNA-1:exon:6338;Parent=Msa0106940-mRNA-1
chr1_3	exon	16821406	16821607	16821406	ID=Msa0106940-mRNA-1:exon:6339;Parent=Msa0106940-mRNA-1
chr1_3	exon	16822597	16822824	16822597	ID=Msa0106940-mRNA-1:exon:6340;Parent=Msa0106940-mRNA-1
chr1_3	exon	16822929	16823027	16822929	ID=Msa0106940-mRNA-1:exon:6341;Parent=Msa0106940-mRNA-1
chr1_3	exon	16823120	16823218	16823120	ID=Msa0106940-mRNA-1:exon:6342;Parent=Msa0106940-mRNA-1
chr1_3	exon	16823311	16823409	16823311	ID=Msa0106940-mRNA-1:exon:6343;Parent=Msa0106940-mRNA-1
chr1_3	exon	16823553	16823605	16823553	ID=Msa0106940-mRNA-1:exon:6344;Parent=Msa0106940-mRNA-1
chr1_3	exon	16825094	16825327	16825094	ID=Msa0106940-mRNA-1:exon:6345;Parent=Msa0106940-mRNA-1
chr1_3	CDS	16814467	16814523	16814467	ID=Msa0106940-mRNA-1:cds;Parent=Msa0106940-mRNA-1
chr1_3	CDS	16814637	16814799	16814637	ID=Msa0106940-mRNA-1:cds;Parent=Msa0106940-mRNA-1
chr1_3	CDS	16814827	16815069	16814827	ID=Msa0106940-mRNA-1:cds;Parent=Msa0106940-mRNA-1
chr1_3	CDS	16815959	16816044	16815959	ID=Msa0106940-mRNA-1:cds;Parent=Msa0106940-mRNA-1
chr1_3	CDS	16816175	16816454	16816175	ID=Msa0106940-mRNA-1:cds;Parent=Msa0106940-mRNA-1
chr1_3	CDS	16816563	16816658	16816563	ID=Msa0106940-mRNA-1:cds;Parent=Msa0106940-mRNA-1
chr1_3	CDS	16817334	16817470	16817334	ID=Msa0106940-mRNA-1:cds;Parent=Msa0106940-mRNA-1
chr1_3	CDS	16817591	16817870	16817591	ID=Msa0106940-mRNA-1:cds;Parent=Msa0106940-mRNA-1
chr1_3	CDS	16818524	16818582	16818524	ID=Msa0106940-mRNA-1:cds;Parent=Msa0106940-mRNA-1
chr1_3	CDS	16818679	16818885	16818679	ID=Msa0106940-mRNA-1:cds;Parent=Msa0106940-mRNA-1
chr1_3	CDS	16821199	16821294	16821199	ID=Msa0106940-mRNA-1:cds;Parent=Msa0106940-mRNA-1
chr1_3	CDS	16821406	16821607	16821406	ID=Msa0106940-mRNA-1:cds;Parent=Msa0106940-mRNA-1
chr1_3	CDS	16822597	16822824	16822597	ID=Msa0106940-mRNA-1:cds;Parent=Msa0106940-mRNA-1
chr1_3	CDS	16822929	16823027	16822929	ID=Msa0106940-mRNA-1:cds;Parent=Msa0106940-mRNA-1
chr1_3	CDS	16823120	16823218	16823120	ID=Msa0106940-mRNA-1:cds;Parent=Msa0106940-mRNA-1
chr1_3	CDS	16823311	16823409	16823311	ID=Msa0106940-mRNA-1:cds;Parent=Msa0106940-mRNA-1
chr1_3	CDS	16823553	16823605	16823553	ID=Msa0106940-mRNA-1:cds;Parent=Msa0106940-mRNA-1
chr1_3	CDS	16825094	16825327	16825094	ID=Msa0106940-mRNA-1:cds;Parent=Msa0106940-mRNA-1

Gene Sequence

>Msa0106940

ATGTCATTTCAAAATATCCCCGATTTTCATAGGATAATATTGCAAGATAAGAAGCTTAGGATTCCCAAGAAGTATGTGGAGAACTTTTGGAAAGGAATATCAAACCCAATATTCCTTAAATTCCCAAATGGTGTTCAACAAAAAATATTTTGGGTGGAGAGTAATGGAGATATTTGGTTTCAAAAAAATTGGGAAAGTTTTGCAAAGTTTCTGAAATATGGTGGATCATATTTCAAGGTTCAGATATTTGGTGCAAATACTTTAGAAATAAATTATTCCAACATAAAATCCATTGATGAAGTTGTTGAAGCTACAGAAAAAGCTAAAGAAGGAGTTGAAGTGAGTGGTGATAGTGATAAGAGTTTAGATGAAAGTGAAATACCCACCCAAGCTCAAAGGACAAGAAAAAATGGCAAGAGAAAAAATAGTGTGGATTTGGATACTACCCAGCCAAAATTCTCAGTTGAAGTTGTTAATGAAAGTGGCAATAATGAGAATCCCTTTTTTGATGTTACATTGCCACAATCTTACGCCCATGGATGCAGGATGGTGGTACCAAGTGATTTTTCAAGAGCACACTTGAACAAATTTAAAGGGATTGCAAATTTAATAGTTGGTGAGGACAAGACTATGGAAGTGAATGTGAACTTTGAAGATAATAATAGAAGATCTGTTTTGACCACTGGTTGGAAGTCATTTAACCAAAAATATAACTTACAAGTTGGTGATAAATGTAAATTTGTGATGACTCAAAGAGATCCACTTTCATTTCTTGTTACTATTACTCCATCAAGGGAGCAATCAAGCTCAAAGAAATTAAAATCGCAAGGTTATAAAGAAGGGACCTCTTCTTGTGGTGATAATCCAAAGAGAAAAGGATTTGAAGGAACTTCTAGGAGCTGCCCAACAAATCATCGTCTTGAAAGTAGGGACAGTGGAGGCATGATTAAGAAGGCTAAAAATTGCTCACCAGTTGAAGTTGTTAATGAGAGTGACAATAATGAGAATCCTTTTTTTTATGTTACATTGTCAAAATCTTACGTCCATGGCAGCAATATGTTGGTGATACCAAGTAATTTTTCAAGAGCACACTTGAACAAATTTAAAGGGATTGCAAATTTAAGAGTTGGTGAGGACAAGACTATGGAAGTGAATGTGACGTTTGAAGATAAGCATAGAAGATCTCTTGTGACTACTGGTTGGAAATCATTTAACCAAAAATATAACTTACAAGTTGGTGATATATGTAAATTTGTGATGACTCAAAGAGAACCACTTTCATTCACCGTTACTATTACTCCATCAAGGGAGCAACCAAGCTTAAAGAAATTAATATCGCAAGAAGGTGGTAATGTGAAGAAACCTAAAACATTCAAGATTGATGTGTATTCAAAATACCCGAATGTTCCAAAGGAGTTTATGAAAAGAGGAAGTCATGAAAACTCTCTGGAATTGAAAATGGGGGGACGATCATGGTTTGTAAAAGTGAATTATTACGATAGTATTCATGGTTATAGGTTCTCTGAAGGTTGGAGACAATTCATAAAAGAATGCAAAGTGGAGATTGGAGATACTCTTCTCTTTAAGTTGATTGATGAGAGCAAGTTTAGGATTCCCAAGAAATATGTGGAGAAATTTTGGAAAGGAATATCAAACCCAATATTCCTTAACTTACCAAATGGTGTTCAACAAAAAATATTTTGGGTTAAGATATTTGGTGTCAATGCTTTAGAAATAGATTATTCCAATATAAAATCTGTTGATGAAGTTGTTGAAGCTACAAAAGAAGCTAAAGAAATTGTTGATTTGACTGATGAGAATGAAATACCAATGGAAGCTCAAATGATAACAAATGGGAAGAGAAAAATGAGTATAGATATTGACACTCTTAAGCAAAAATTCCCAGGGATTGCAAGCTTAAGAGTTGGAGAGGACCCTGCTATGAAAGTGGATATAGTGTTTAACAATAAAAGATCTTCTAATTCTATGACTATTGGTTGGAAGTCATTTAACCAAAAATATAACTTAAAAGTTGGTGATATATGTAAATTTGTGATGACTCAAAGAGAACCACTTTTATTCACTATTACTATCACTAAAGCCAACAAGGGACCAAACCCTAAGAAGTTGCAAGGTTATAAAGAAGGGATCTCTTCTGGTGATCGTGATATTCTAAAGAGGAGAGACACTGGAGAAACTTGTAGGAGCCTTCCAAAAATGCATGCTTTTCAGGGTTATAAAGAAGATATCTCTTCTTGTGATCGTGATATTCTAAAGTGGAAAGACACTCGAGAAACTTGTAGGACCCTTCCAAAAGTGCATGCTCTTCAGGGTTATAAAGAAGGGATCTCTTATGGTGATCGTGATATTCTAAAGAGGAAAGACGATGGAGAAACTTGTAGGACCCTTCCAAAAGTGCAAGCTCTTCAGGGAAAGACATTGGAGAAACTTGTAGGACCCTTCCAAAAGAGCATGCTTCCCATGCATGCACCAAAGAGATTTATGGAAAGAGGATGTCGTGAAAAATTTGTGGAGTTGAAAATGGGGGGACAATCATGGTTCGTAAAAGTGATTTATTATCCTAGTATTCGTGGTTGTCAGTTCAGTAAAGGTTGGATAAAATTTATGAAAGAATGTAAAGTGAAAATTGGAAATACTTGTCTCCTAGAGCGGATTGATGAGAAAAATTATGTGTTTAAAGTTTCCATTGTGGGATAG

Protein sequence

>Msa0106940

MSFQNIPDFHRIILQDKKLRIPKKYVENFWKGISNPIFLKFPNGVQQKIFWVESNGDIWFQKNWESFAKFLKYGGSYFKVQIFGANTLEINYSNIKSIDEVVEATEKAKEGVEVSGDSDKSLDESEIPTQAQRTRKNGKRKNSVDLDTTQPKFSVEVVNESGNNENPFFDVTLPQSYAHGCRMVVPSDFSRAHLNKFKGIANLIVGEDKTMEVNVNFEDNNRRSVLTTGWKSFNQKYNLQVGDKCKFVMTQRDPLSFLVTITPSREQSSSKKLKSQGYKEGTSSCGDNPKRKGFEGTSRSCPTNHRLESRDSGGMIKKAKNCSPVEVVNESDNNENPFFYVTLSKSYVHGSNMLVIPSNFSRAHLNKFKGIANLRVGEDKTMEVNVTFEDKHRRSLVTTGWKSFNQKYNLQVGDICKFVMTQREPLSFTVTITPSREQPSLKKLISQEGGNVKKPKTFKIDVYSKYPNVPKEFMKRGSHENSLELKMGGRSWFVKVNYYDSIHGYRFSEGWRQFIKECKVEIGDTLLFKLIDESKFRIPKKYVEKFWKGISNPIFLNLPNGVQQKIFWVKIFGVNALEIDYSNIKSVDEVVEATKEAKEIVDLTDENEIPMEAQMITNGKRKMSIDIDTLKQKFPGIASLRVGEDPAMKVDIVFNNKRSSNSMTIGWKSFNQKYNLKVGDICKFVMTQREPLLFTITITKANKGPNPKKLQGYKEGISSGDRDILKRRDTGETCRSLPKMHAFQGYKEDISSCDRDILKWKDTRETCRTLPKVHALQGYKEGISYGDRDILKRKDDGETCRTLPKVQALQGKTLEKLVGPFQKSMLPMHAPKRFMERGCREKFVELKMGGQSWFVKVIYYPSIRGCQFSKGWIKFMKECKVKIGNTCLLERIDEKNYVFKVSIVG*