AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0106940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0106940 MtrunA17_Chr1g0163251 58.684 380 59 5 530 811 13 392 6.77e-127 388
Msa0106940 MtrunA17_Chr1g0163251 60.411 341 95 8 1 313 1 329 1.38e-124 382
Msa0106940 MtrunA17_Chr1g0163251 57.143 140 59 1 305 444 152 290 3.51e-44 165
Msa0106940 MtrunA17_Chr1g0163181 44.206 466 190 11 1 433 1 429 6.99e-110 345
Msa0106940 MtrunA17_Chr1g0163181 46.743 261 106 3 303 536 168 422 3.59e-67 231
Msa0106940 MtrunA17_Chr1g0163181 33.956 321 101 6 530 740 13 332 3.28e-44 166
Msa0106940 MtrunA17_Chr1g0163201 55.674 282 93 6 20 273 18 295 1.15e-88 288
Msa0106940 MtrunA17_Chr1g0163201 58.036 224 89 3 315 536 165 385 2.90e-76 254
Msa0106940 MtrunA17_Chr1g0163201 35.252 278 76 4 537 710 18 295 2.65e-38 148
Msa0106940 MtrunA17_Chr1g0163201 71.053 76 22 0 830 905 318 393 1.06e-27 116
Msa0106940 MtrunA17_Chr1g0163151 57.207 222 87 3 315 536 1 214 1.89e-74 243
Msa0106940 MtrunA17_Chr1g0163151 30.855 269 123 6 164 432 15 220 3.02e-29 116
Msa0106940 MtrunA17_Chr1g0163151 63.158 76 28 0 830 905 147 222 1.84e-26 108
Msa0106940 MtrunA17_Chr1g0163151 48.052 77 40 0 634 710 48 124 2.55e-17 82.0
Msa0106940 MtrunA17_Chr1g0163261 45.806 310 122 7 1 277 1 297 2.74e-74 246
Msa0106940 MtrunA17_Chr1g0163261 47.674 172 83 4 282 447 126 296 7.15e-39 147
Msa0106940 MtrunA17_Chr1g0163261 55.696 79 35 0 633 711 216 294 6.15e-22 97.4
Msa0106940 MtrunA17_Chr1g0163241 75.758 165 23 3 1 156 7 163 1.47e-72 236
Msa0106940 MtrunA17_Chr1g0163241 50.000 142 28 4 537 636 22 162 5.88e-28 110
Msa0106940 MtrunA17_Chr1g0171611 47.059 289 109 8 1 265 1 269 4.14e-72 239
Msa0106940 MtrunA17_Chr1g0171611 33.068 251 88 6 531 701 18 268 8.16e-29 117
Msa0106940 MtrunA17_Chr1g0171611 52.632 114 49 4 327 436 157 269 7.12e-28 114
Msa0106940 MtrunA17_Chr1g0163231 47.222 288 122 8 1 265 1 281 5.23e-71 236
Msa0106940 MtrunA17_Chr1g0163231 33.840 263 82 5 531 701 18 280 9.95e-34 131
Msa0106940 MtrunA17_Chr1g0163231 55.906 127 48 5 314 436 159 281 1.14e-32 128
Msa0106940 MtrunA17_Chr1g0163111 51.739 230 94 3 315 536 1 221 4.91e-69 229
Msa0106940 MtrunA17_Chr1g0163111 32.472 271 126 7 164 432 12 227 3.84e-32 125
Msa0106940 MtrunA17_Chr1g0163111 45.600 125 54 3 782 905 118 229 3.15e-25 105
Msa0106940 MtrunA17_Chr1g0163111 36.134 119 65 3 634 751 45 153 5.08e-16 78.6
Msa0106940 MtrunA17_Chr1g0163191 64.780 159 39 3 1 143 1 158 1.39e-52 181
Msa0106940 MtrunA17_Chr1g0163191 41.096 146 35 2 530 624 13 158 1.10e-20 90.1
Msa0106940 MtrunA17_Chr6g0476171 41.702 235 122 8 309 532 4 234 6.64e-44 159
Msa0106940 MtrunA17_Chr6g0476171 36.735 147 89 4 130 274 2 146 2.38e-21 94.4
Msa0106940 MtrunA17_Chr6g0476171 48.235 85 43 1 628 711 62 146 5.24e-17 81.6
Msa0106940 MtrunA17_Chr6g0476171 54.098 61 28 0 844 904 185 245 6.97e-14 72.4
Msa0106940 MtrunA17_Chr1g0162151 41.079 241 120 6 315 555 1 219 2.89e-41 150
Msa0106940 MtrunA17_Chr1g0162151 50.000 112 54 1 167 278 23 132 5.71e-30 118
Msa0106940 MtrunA17_Chr1g0162151 49.383 81 41 0 633 713 52 132 9.32e-21 92.0
Msa0106940 MtrunA17_Chr1g0163091 54.615 130 58 1 315 444 1 129 5.27e-38 139
Msa0106940 MtrunA17_Chr1g0163091 50.000 122 61 0 157 278 13 134 7.75e-32 122
Msa0106940 MtrunA17_Chr1g0163091 48.148 81 42 0 633 713 52 132 1.56e-19 86.7
Msa0106940 MtrunA17_Chr8g0390841 23.701 481 293 15 14 432 48 516 5.19e-24 107
Msa0106940 MtrunA17_Chr1g0163221 29.455 275 162 9 14 261 20 289 4.06e-23 102
Msa0106940 MtrunA17_Chr1g0163221 28.571 210 93 9 336 538 195 354 6.94e-13 71.2
Msa0106940 MtrunA17_Chr4g0067431 26.846 298 171 9 9 261 15 310 7.52e-23 100
Msa0106940 MtrunA17_Chr7g0233561 29.677 310 164 11 9 272 18 319 2.89e-22 99.0
Msa0106940 MtrunA17_Chr1g0163131 26.829 287 165 9 14 262 27 306 3.96e-22 98.2
Msa0106940 MtrunA17_Chr1g0163131 53.247 77 32 2 830 904 232 306 4.31e-16 80.5
Msa0106940 MtrunA17_Chr1g0163131 49.367 79 36 2 469 545 232 308 8.90e-15 76.3
Msa0106940 MtrunA17_Chr1g0208771 25.751 466 280 17 20 436 12 460 1.28e-21 99.4
Msa0106940 MtrunA17_Chr3g0131891 28.777 278 164 7 14 261 28 301 3.00e-21 96.3
Msa0106940 MtrunA17_Chr1g0163101 38.000 150 78 4 14 154 26 169 6.11e-20 88.6
Msa0106940 MtrunA17_Chr7g0233521 29.545 264 159 8 21 261 2 261 1.74e-19 89.7
Msa0106940 MtrunA17_Chr3g0103181 26.766 269 179 7 9 261 12 278 9.18e-18 84.7
Msa0106940 MtrunA17_Chr7g0233541 27.526 287 152 9 21 261 2 278 1.25e-17 84.7
Msa0106940 MtrunA17_Chr1g0162161 34.965 143 80 4 21 154 4 142 2.73e-17 80.1
Msa0106940 MtrunA17_Chr3g0103171 26.437 261 172 8 20 261 5 264 3.41e-17 82.8
Msa0106940 MtrunA17_Chr6g0476181 33.974 156 84 4 21 158 2 156 1.23e-16 78.2
Msa0106940 MtrunA17_Chr1g0163141 35.252 139 68 4 17 138 7 140 6.01e-16 77.0
Msa0106940 MtrunA17_Chr3g0103191 29.167 216 125 6 9 200 12 223 6.48e-16 78.6
Msa0106940 MtrunA17_Chr5g0419211 40.625 96 54 2 185 279 11 104 1.53e-15 73.6
Msa0106940 MtrunA17_Chr5g0419211 41.860 86 49 1 356 440 11 96 1.25e-14 70.9
Msa0106940 MtrunA17_Chr1g0163121 43.678 87 39 2 19 96 9 94 2.25e-15 74.3
Msa0106940 MtrunA17_Chr7g0233571 43.434 99 41 3 9 92 10 108 2.37e-15 76.3
Msa0106940 MtrunA17_Chr1g0163071 24.138 290 165 7 21 261 2 285 3.94e-15 77.4
Msa0106940 MtrunA17_Chr7g0233531 27.574 272 154 7 21 261 2 261 6.78e-15 76.3
Msa0106940 MtrunA17_Chr5g0419201 33.594 128 71 3 14 127 25 152 9.30e-15 73.9
Msa0106940 MtrunA17_Chr1g0163081 35.897 117 64 3 21 128 6 120 9.65e-15 72.4
Msa0106940 MtrunA17_Chr3g0103151 34.167 120 65 3 9 114 12 131 9.46e-14 70.1
Msa0106940 MtrunA17_Chr6g0467351 33.962 106 58 2 13 106 23 128 4.37e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 152 sgRNAs with CRISPR-Local

Find 636 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAATATGTGGAGAAATTT+TGG 0.128665 1_3:+16821209 Msa0106940:CDS
GAACACCATTTGGGAATTTA+AGG 0.129045 1_3:-16814693 None:intergenic
AAACTCTCTGGAATTGAAAA+TGG 0.167608 1_3:+16818717 Msa0106940:CDS
TATTTCAAGGTTCAGATATT+TGG 0.174943 1_3:+16814835 Msa0106940:CDS
TATTTCAAGGTTAAGATATT+TGG 0.184615 1_3:+16821397 Msa0106940:intron
TCCAAAAGTGCATGCTCTTC+AGG 0.202285 1_3:+16823196 Msa0106940:CDS
TTTGCAAAGTTTCTGAAATA+TGG 0.203016 1_3:+16814778 Msa0106940:CDS
CCCTGAAGAGCTTGCACTTT+TGG 0.204038 1_3:-16823388 None:intergenic
CCATGGGAAGCATGCTCTTT+TGG 0.213895 1_3:-16823584 None:intergenic
AAGAACTCACCTGAGAATTT+TGG 0.224542 1_3:-16815057 None:intergenic
CCCTGAAGAGCATGCACTTT+TGG 0.229018 1_3:-16823197 None:intergenic
TCCAAAAGTGCAAGCTCTTC+AGG 0.235087 1_3:+16823387 Msa0106940:CDS
TGGAGAGTAATGGAGATATT+TGG 0.238170 1_3:+16814734 Msa0106940:CDS
TTTGGGAATTTAAGGAATAT+TGG 0.244109 1_3:-16814685 None:intergenic
GCATGCACCAAAGAGATTTA+TGG 0.255225 1_3:+16825093 Msa0106940:intron
AGAAGTATGTGGAGAACTTT+TGG 0.262295 1_3:+16814647 Msa0106940:CDS
GCACACTTGAACAAATTTAA+AGG 0.264956 1_3:+16816199 Msa0106940:CDS
GCACACTTGAACAAATTTAA+AGG 0.264956 1_3:+16817615 Msa0106940:CDS
TTTGGTAAGTTAAGGAATAT+TGG 0.266731 1_3:-16821247 None:intergenic
GAGCTTGATTGCTCCCTTGA+TGG 0.268197 1_3:-16816412 None:intergenic
AAAGAATGTAAAGTGAAAAT+TGG 0.268721 1_3:+16825238 Msa0106940:CDS
AAAATTTGTGGAGTTGAAAA+TGG 0.282812 1_3:+16825132 Msa0106940:CDS
CCTCTTTCCATAAATCTCTT+TGG 0.284821 1_3:-16825100 None:intergenic
ACGATAGTATTCATGGTTAT+AGG 0.290213 1_3:+16818773 Msa0106940:CDS
AAATTTCTCCACATATTTCT+TGG 0.293817 1_3:-16821206 None:intergenic
AAAGTTCTCCACATACTTCT+TGG 0.303447 1_3:-16814644 None:intergenic
AAGCTTGGTTGCTCCCTTGA+TGG 0.305403 1_3:-16817828 None:intergenic
TTGGGAATTTAAGGAATATT+GGG 0.309746 1_3:-16814684 None:intergenic
TCTTCTAATTCTATGACTAT+TGG 0.312742 1_3:+16822665 Msa0106940:CDS
TTGGTAAGTTAAGGAATATT+GGG 0.313398 1_3:-16821246 None:intergenic
CAATATTATCCTATGAAAAT+CGG 0.317709 1_3:-16814486 None:intergenic
AAGGATTTGAAGGAACTTCT+AGG 0.319754 1_3:+16816608 Msa0106940:CDS
CTTAGGGTTTGGTCCCTTGT+TGG 0.342702 1_3:-16822792 None:intergenic
GAACACCATTTGGTAAGTTA+AGG 0.345947 1_3:-16821255 None:intergenic
CCTTGCAACTTCTTAGGGTT+TGG 0.347894 1_3:-16822803 None:intergenic
AATTATTACGATAGTATTCA+TGG 0.354510 1_3:+16818766 Msa0106940:CDS
AACTCTCTGGAATTGAAAAT+GGG 0.368127 1_3:+16818718 Msa0106940:CDS
GGGATTGCAAATTTAATAGT+TGG 0.369832 1_3:+16816220 Msa0106940:CDS
CACACTTGAACAAATTTAAA+GGG 0.370401 1_3:+16816200 Msa0106940:CDS
CACACTTGAACAAATTTAAA+GGG 0.370401 1_3:+16817616 Msa0106940:CDS
TATAAAGAAGGGATCTCTTC+TGG 0.374152 1_3:+16822931 Msa0106940:CDS
TATAAAGAAGGGATCTCTTA+TGG 0.386855 1_3:+16823313 Msa0106940:CDS
CTTTCAAGACGATGATTTGT+TGG 0.390468 1_3:-16816637 None:intergenic
AATTTCTCCACATATTTCTT+GGG 0.391202 1_3:-16821205 None:intergenic
GAAGCTCAAATGATAACAAA+TGG 0.392358 1_3:+16821535 Msa0106940:CDS
AAATTTGTGGAGTTGAAAAT+GGG 0.407272 1_3:+16825133 Msa0106940:CDS
CTCTCATTAACAACTTCAAC+TGG 0.412647 1_3:-16817378 None:intergenic
AATATTATCCTATGAAAATC+GGG 0.414910 1_3:-16814485 None:intergenic
GTGTTTAAAGTTTCCATTGT+GGG 0.423593 1_3:+16825301 Msa0106940:CDS
CCAAAAGTGCATGCTCTTCA+GGG 0.432133 1_3:+16823197 Msa0106940:CDS
GTTGAAGTTGTTAATGAAAG+TGG 0.433708 1_3:+16815958 Msa0106940:intron
AGCTTCAACAACTTCATCAA+TGG 0.433788 1_3:-16814896 None:intergenic
GGGATTGCAAATTTAAGAGT+TGG 0.438060 1_3:+16817636 Msa0106940:CDS
CCAAAGGAGTTTATGAAAAG+AGG 0.438669 1_3:+16818685 Msa0106940:CDS
AGTTGGTGAGGACAAGACTA+TGG 0.440819 1_3:+16817653 Msa0106940:CDS
AAGTTCTCCACATACTTCTT+GGG 0.445593 1_3:-16814643 None:intergenic
AGTTGGTGAGGACAAGACTA+TGG 0.446007 1_3:+16816237 Msa0106940:CDS
AAAGAATGCAAAGTGGAGAT+TGG 0.446068 1_3:+16818823 Msa0106940:CDS
CCAAAGAGAAAAGGATTTGA+AGG 0.447001 1_3:+16816598 Msa0106940:CDS
AGGAAGTCATGAAAACTCTC+TGG 0.451275 1_3:+16818705 Msa0106940:CDS
GACTTACCATCCTGCATCCA+TGG 0.457913 1_3:-16816029 None:intergenic
GAGACACTGGAGAAACTTGT+AGG 0.463029 1_3:+16822977 Msa0106940:CDS
GTTATAGGTTCTCTGAAGGT+TGG 0.464034 1_3:+16818788 Msa0106940:CDS
TTGTTACTATTACTCCATCA+AGG 0.466914 1_3:+16816398 Msa0106940:CDS
CCCTGACAAGGTTATAAAGA+AGG 0.467696 1_3:+16822919 Msa0106940:intron
CGTGGTTGTCAGTTCAGTAA+AGG 0.468915 1_3:+16825199 Msa0106940:CDS
GATATTAATTTCTTTAAGCT+TGG 0.469147 1_3:-16817843 None:intergenic
CCATGACAAGGTTATAAAGA+AGG 0.469658 1_3:+16823301 Msa0106940:intron
CTTGTCCTTTGAGCTTGGGT+GGG 0.470047 1_3:-16814988 None:intergenic
CATAGGTGGATCATATTTCA+AGG 0.473274 1_3:+16814822 Msa0106940:intron
CCAAAAGTGCAAGCTCTTCA+GGG 0.474142 1_3:+16823388 Msa0106940:CDS
AACTGACAACCACGAATACT+AGG 0.474382 1_3:-16825190 None:intergenic
ATTTATTATCCTAGTATTCG+TGG 0.474870 1_3:+16825181 Msa0106940:CDS
AGAAGATCTCTTGTGACTAC+TGG 0.477196 1_3:+16817705 Msa0106940:CDS
ATATTCCTTAACTTACCAAA+TGG 0.484275 1_3:+16821250 Msa0106940:CDS
TCTTGTCCTTTGAGCTTGGG+TGG 0.484511 1_3:-16814989 None:intergenic
AATCTTACGCCCATGGATGC+AGG 0.492072 1_3:+16816019 Msa0106940:CDS
AAGACACTCGAGAAACTTGT+AGG 0.496208 1_3:+16823168 Msa0106940:CDS
GTTATCATTTGAGCTTCCAT+TGG 0.498272 1_3:-16821529 None:intergenic
TTTCAAGACGATGATTTGTT+GGG 0.498866 1_3:-16816636 None:intergenic
CCGTTACTATTACTCCATCA+AGG 0.499776 1_3:+16817814 Msa0106940:CDS
TGCAAATTTAATAGTTGGTG+AGG 0.500399 1_3:+16816225 Msa0106940:CDS
ACTATATCCACTTTCATAGC+AGG 0.506832 1_3:-16822626 None:intergenic
ATATTCCTTAAATTCCCAAA+TGG 0.509356 1_3:+16814688 Msa0106940:CDS
GGTGATAATCCAAAGAGAAA+AGG 0.509436 1_3:+16816589 Msa0106940:CDS
CCAAAGAGATTTATGGAAAG+AGG 0.511759 1_3:+16825100 Msa0106940:CDS
AAGACATTGGAGAAACTTGT+AGG 0.516345 1_3:+16823555 Msa0106940:CDS
AAGACGATGGAGAAACTTGT+AGG 0.516472 1_3:+16823359 Msa0106940:CDS
CAATTACCAGGTTATAAAGA+AGG 0.517705 1_3:+16816553 Msa0106940:intron
TGCAAATTTAAGAGTTGGTG+AGG 0.518069 1_3:+16817641 Msa0106940:CDS
ATAGTAATAGTGAATAAAAG+TGG 0.519587 1_3:-16822761 None:intergenic
CTAATTCTATGACTATTGGT+TGG 0.519860 1_3:+16822669 Msa0106940:CDS
AAGCTCAAATGATAACAAAT+GGG 0.523055 1_3:+16821536 Msa0106940:CDS
GGGATTGCAAGCTTAAGAGT+TGG 0.529065 1_3:+16822596 Msa0106940:intron
ATAGTAACAAGAAATGAAAG+TGG 0.535068 1_3:-16816385 None:intergenic
CATGACAAGGTTATAAAGAA+GGG 0.535216 1_3:+16823302 Msa0106940:intron
ATTCTAAAGAGGAGAGACAC+TGG 0.536518 1_3:+16822964 Msa0106940:CDS
GTTGTCAGTTCAGTAAAGGT+TGG 0.536590 1_3:+16825203 Msa0106940:CDS
ACTACCCAGCCAAAATTCTC+AGG 0.537063 1_3:+16815048 Msa0106940:CDS
TTACCAACATATTGCTGCCA+TGG 0.540173 1_3:-16817452 None:intergenic
CATGGTTATAGGTTCTCTGA+AGG 0.540492 1_3:+16818784 Msa0106940:CDS
TGTTACTATTACTCCATCAA+GGG 0.542300 1_3:+16816399 Msa0106940:CDS
CATCCATGGGCGTAAGATTG+TGG 0.545061 1_3:-16816015 None:intergenic
TACTATCACTAAAGCCAACA+AGG 0.548522 1_3:+16822778 Msa0106940:CDS
ATTCTAAAGAGGAAAGACAT+TGG 0.551775 1_3:+16823542 Msa0106940:intron
TCAAAGAAATTAAAATCGCA+AGG 0.552843 1_3:+16816433 Msa0106940:CDS
TGGATTATCACCACAAGAAG+AGG 0.557132 1_3:-16816578 None:intergenic
GTGATCGTGATATTCTAAAG+TGG 0.561806 1_3:+16823144 Msa0106940:CDS
GATCTCTTGTGACTACTGGT+TGG 0.563285 1_3:+16817709 Msa0106940:CDS
CCTGACAAGGTTATAAAGAA+GGG 0.568332 1_3:+16822920 Msa0106940:intron
TTAAAGAAATTAATATCGCA+AGG 0.569842 1_3:+16817849 Msa0106940:CDS
CAGTGGAGGCATGATTAAGA+AGG 0.573799 1_3:+16817341 Msa0106940:CDS
ATAGTAACGGTGAATGAAAG+TGG 0.574816 1_3:-16817801 None:intergenic
TTGTCAAAATCTTACGTCCA+TGG 0.576626 1_3:+16817435 Msa0106940:CDS
TACTTTGCAGGTAGGGACAG+TGG 0.579327 1_3:+16817324 Msa0106940:intron
CGTCCATGGCAGCAATATGT+TGG 0.579724 1_3:+16817449 Msa0106940:CDS
AATTACCAGGTTATAAAGAA+GGG 0.583013 1_3:+16816554 Msa0106940:intron
TGCAAGCTTAAGAGTTGGAG+AGG 0.584782 1_3:+16822601 Msa0106940:CDS
GTGATCGTGATATTCTAAAG+AGG 0.585254 1_3:+16823335 Msa0106940:CDS
TTGCCACAATCTTACGCCCA+TGG 0.586417 1_3:+16816012 Msa0106940:CDS
CCAAAAGAGCATGCTTCCCA+TGG 0.586590 1_3:+16823584 Msa0106940:CDS
AGAGGACCCTGCTATGAAAG+TGG 0.587637 1_3:+16822619 Msa0106940:CDS
CTCTCTGGAATTGAAAATGG+GGG 0.588733 1_3:+16818720 Msa0106940:CDS
ACTTACCATCCTGCATCCAT+GGG 0.589632 1_3:-16816028 None:intergenic
GAAATACTTGTCTCCTAGAG+CGG 0.589908 1_3:+16825260 Msa0106940:CDS
CCAAACCCTAAGAAGTTGCA+AGG 0.590895 1_3:+16822803 Msa0106940:CDS
GAGGATTCCCAAGAAGTATG+TGG 0.591680 1_3:+16814636 Msa0106940:intron
GTGATCGTGATATTCTAAAG+AGG 0.591830 1_3:+16822953 Msa0106940:CDS
GAGGATTCCCAAGAAATATG+TGG 0.594786 1_3:+16821198 Msa0106940:intron
ATATTTGCAGAATGTTCCAA+AGG 0.598638 1_3:+16818669 Msa0106940:intron
AAAGAAGGAGTTGAAGTGAG+TGG 0.599535 1_3:+16814931 Msa0106940:CDS
CGTTACTATTACTCCATCAA+GGG 0.606445 1_3:+16817815 Msa0106940:CDS
ACTCTCTGGAATTGAAAATG+GGG 0.608150 1_3:+16818719 Msa0106940:CDS
ATTTGTGGAGTTGAAAATGG+GGG 0.611391 1_3:+16825135 Msa0106940:CDS
ATTCATAAAAGAATGCAAAG+TGG 0.613826 1_3:+16818816 Msa0106940:CDS
GTTAAATGACTTCCAACCAG+TGG 0.617600 1_3:-16816305 None:intergenic
AAATACCCACCCAAGCTCAA+AGG 0.617745 1_3:+16814983 Msa0106940:CDS
TTTGTGGAGTTGAAAATGGG+GGG 0.623702 1_3:+16825136 Msa0106940:CDS
CTATATCCACTTTCATAGCA+GGG 0.623870 1_3:-16822625 None:intergenic
TGATGAGAATGAAATACCAA+TGG 0.628956 1_3:+16821513 Msa0106940:CDS
AATTTGTGGAGTTGAAAATG+GGG 0.630421 1_3:+16825134 Msa0106940:CDS
AAAGAAGGGACCTCTTCTTG+TGG 0.632268 1_3:+16816568 Msa0106940:CDS
TGTGTTTAAAGTTTCCATTG+TGG 0.641962 1_3:+16825300 Msa0106940:CDS
ATTCTAAAGAGGAAAGACGA+TGG 0.644377 1_3:+16823346 Msa0106940:CDS
TGATGTGTATTCAAAATACC+CGG 0.654603 1_3:+16818561 Msa0106940:CDS
CCTTGATGGAGTAATAGTAA+CGG 0.655922 1_3:-16817814 None:intergenic
ACTATCACTAAAGCCAACAA+GGG 0.662647 1_3:+16822779 Msa0106940:CDS
TCTCTGGAATTGAAAATGGG+GGG 0.663804 1_3:+16818721 Msa0106940:CDS
TATTGGGTTCTATCCCACAA+TGG 0.665712 1_3:-16825314 None:intergenic
TTACGCCCATGGATGCAGGA+TGG 0.665735 1_3:+16816023 Msa0106940:CDS
ATATTATCCTATGAAAATCG+GGG 0.671225 1_3:-16814484 None:intergenic
TTTGCAGGTAGGGACAGTGG+AGG 0.713017 1_3:+16817327 Msa0106940:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAGAAAATATTCTTTTTTT+AGG + chr1_3:16815196-16815215 Msa0106940:intron 10.0%
!!! TTTTGAATATGATTTAAAAA+AGG + chr1_3:16815524-16815543 Msa0106940:intron 10.0%
!!! TTTGTTATTATTTTCTATAA+GGG - chr1_3:16815598-16815617 None:intergenic 10.0%
!!! ATTTGTTATTATTTTCTATA+AGG - chr1_3:16815599-16815618 None:intergenic 10.0%
!! TCTTAATAAATAAAATGATA+TGG + chr1_3:16815787-16815806 Msa0106940:intron 10.0%
!!! TTTTATTTATTAAAGATTAG+TGG - chr1_3:16816130-16816149 None:intergenic 10.0%
!! AATCTTTAATAAATAAAATG+TGG + chr1_3:16816132-16816151 Msa0106940:intron 10.0%
!! ACTAATATTTAATCAATTAT+TGG - chr1_3:16816716-16816735 None:intergenic 10.0%
!!! TGGTTTATTTTTTAAAAAAA+AGG - chr1_3:16816868-16816887 None:intergenic 10.0%
!!! TTTTTAAAAAATAAACCAAA+AGG + chr1_3:16816870-16816889 Msa0106940:intron 10.0%
!!! TTTTAAAAAATAAACCAAAA+GGG + chr1_3:16816871-16816890 Msa0106940:intron 10.0%
!!! ATCATTTTATATTTATTTTG+GGG - chr1_3:16816919-16816938 None:intergenic 10.0%
!!! CTATCATTTTATATTTATTT+TGG - chr1_3:16816921-16816940 None:intergenic 10.0%
!! ATATTTAAAAAATGACTAAT+AGG - chr1_3:16816981-16817000 None:intergenic 10.0%
!!! GATATGATTTAATTTTTTTT+AGG + chr1_3:16817001-16817020 Msa0106940:intron 10.0%
!! TATATCATGATAAAAAAATA+GGG - chr1_3:16817187-16817206 None:intergenic 10.0%
!! ATATATCATGATAAAAAAAT+AGG - chr1_3:16817188-16817207 None:intergenic 10.0%
!!! AGTAAAATTACTTTTTTTTT+TGG + chr1_3:16817230-16817249 Msa0106940:intron 10.0%
!! TTAATGTAATAAATACATTT+AGG + chr1_3:16819898-16819917 Msa0106940:intron 10.0%
!!! TTAATTTTTAAATATATTGG+TGG + chr1_3:16821370-16821389 Msa0106940:intron 10.0%
!!! TAATAAAATTCATTTTTCAA+AGG - chr1_3:16821688-16821707 None:intergenic 10.0%
!! TAGATAATTAAAGATATTAA+CGG - chr1_3:16822316-16822335 None:intergenic 10.0%
!! TTAACTAAATAAAGAAATTA+AGG - chr1_3:16823064-16823083 None:intergenic 10.0%
!! TTAACTAAATAAAGAAATTA+AGG - chr1_3:16823064-16823083 None:intergenic 10.0%
!!! AATTAAAATTGTTATTAATC+TGG + chr1_3:16823691-16823710 Msa0106940:intron 10.0%
!! TAAAATTTCTTTCAAATTTA+TGG - chr1_3:16823847-16823866 None:intergenic 10.0%
!!! CATTTTTTTAAATTGTTATT+TGG + chr1_3:16824170-16824189 Msa0106940:intron 10.0%
!!! GAATTATTAAATATTTTGTA+AGG - chr1_3:16824549-16824568 None:intergenic 10.0%
!! ACAAAATATTTAATAATTCA+AGG + chr1_3:16824550-16824569 Msa0106940:intron 10.0%
!!! AAATTTAGAGATTTTTAAAT+AGG - chr1_3:16824663-16824682 None:intergenic 10.0%
!!! TAAAAATCTCTAAATTTTTT+TGG + chr1_3:16824666-16824685 Msa0106940:intron 10.0%
!!! AAAAATCTCTAAATTTTTTT+GGG + chr1_3:16824667-16824686 Msa0106940:intron 10.0%
!!! TATAATATCCTATTTTTATT+GGG - chr1_3:16824694-16824713 None:intergenic 10.0%
!!! TTATAATATCCTATTTTTAT+TGG - chr1_3:16824695-16824714 None:intergenic 10.0%
!! TATAAAAATATATAACCATT+TGG + chr1_3:16824786-16824805 Msa0106940:intron 10.0%
!!! TGTTCAACAAAAAATATTTT+GGG + chr1_3:16814711-16814730 Msa0106940:CDS 15.0%
!!! ATATTTGGTTTCAAAAAAAT+TGG + chr1_3:16814749-16814768 Msa0106940:CDS 15.0%
!!! TATTTGGTTTCAAAAAAATT+GGG + chr1_3:16814750-16814769 Msa0106940:CDS 15.0%
!! ATATTCAAAAAATGACTAAT+AGG - chr1_3:16815514-16815533 None:intergenic 15.0%
!! TCATAAAATTATGATACATA+GGG - chr1_3:16815568-16815587 None:intergenic 15.0%
!! ATCATAAAATTATGATACAT+AGG - chr1_3:16815569-16815588 None:intergenic 15.0%
!!! AGCATTTTTAATAACAAAAA+AGG - chr1_3:16816464-16816483 None:intergenic 15.0%
!! ATCAATTATTGGTAAATTAA+GGG - chr1_3:16816705-16816724 None:intergenic 15.0%
!! AATCAATTATTGGTAAATTA+AGG - chr1_3:16816706-16816725 None:intergenic 15.0%
!!! TTTTTTAAAAAAAAGGTTCA+AGG - chr1_3:16816861-16816880 None:intergenic 15.0%
!! AATTTATGTAATTAATGCAT+TGG - chr1_3:16817112-16817131 None:intergenic 15.0%
!!! CAAAAAAATTTACCTTTTAA+AGG + chr1_3:16817134-16817153 Msa0106940:intron 15.0%
!! CATGATATATAAATAAATGT+AGG + chr1_3:16817198-16817217 Msa0106940:intron 15.0%
!! AAATAAAAGTTTAGATAAGT+TGG - chr1_3:16816670-16816689 None:intergenic 15.0%
!! ATCAATTATTGATAAATTCA+GGG - chr1_3:16818125-16818144 None:intergenic 15.0%
!! AATCAATTATTGATAAATTC+AGG - chr1_3:16818126-16818145 None:intergenic 15.0%
!! CATAAATTTCAAAATCATTA+GGG - chr1_3:16818224-16818243 None:intergenic 15.0%
!! TCATAAATTTCAAAATCATT+AGG - chr1_3:16818225-16818244 None:intergenic 15.0%
!! ACATTATTTCAAAATCATTA+GGG - chr1_3:16818253-16818272 None:intergenic 15.0%
!! AACATTATTTCAAAATCATT+AGG - chr1_3:16818254-16818273 None:intergenic 15.0%
!!! ACTTATCAATAATTTGAAAT+AGG - chr1_3:16818358-16818377 None:intergenic 15.0%
!! ACGATTAATTACATAAAATA+TGG + chr1_3:16818585-16818604 Msa0106940:intron 15.0%
!! TGAAGAAAATATATATGTTA+GGG - chr1_3:16820184-16820203 None:intergenic 15.0%
!! TTGAAGAAAATATATATGTT+AGG - chr1_3:16820185-16820204 None:intergenic 15.0%
!! CATTAAACAATTTATGTATT+TGG + chr1_3:16820557-16820576 Msa0106940:intron 15.0%
!!! TCAATAGTATTAAAACATTT+TGG + chr1_3:16820885-16820904 Msa0106940:intron 15.0%
!! AATTTAATTCTTTCTAATTG+GGG - chr1_3:16821105-16821124 None:intergenic 15.0%
!! CAATTTAATTCTTTCTAATT+GGG - chr1_3:16821106-16821125 None:intergenic 15.0%
!! ACAATTTAATTCTTTCTAAT+TGG - chr1_3:16821107-16821126 None:intergenic 15.0%
!!! TGTTCAACAAAAAATATTTT+GGG + chr1_3:16814711-16814730 Msa0106940:CDS 15.0%
!!! ATATTTGGTTTCAAAAAAAT+TGG + chr1_3:16814749-16814768 Msa0106940:CDS 15.0%
!!! TATTTGGTTTCAAAAAAATT+GGG + chr1_3:16814750-16814769 Msa0106940:CDS 15.0%
!! ATTACTTGAAATTAAGTTAA+GGG - chr1_3:16821782-16821801 None:intergenic 15.0%
!! TATTACTTGAAATTAAGTTA+AGG - chr1_3:16821783-16821802 None:intergenic 15.0%
!!! ATGAATTTTAAGTTTTTTGA+GGG + chr1_3:16821941-16821960 Msa0106940:intron 15.0%
!!! CAACTTTTAAGTTATATTTT+TGG - chr1_3:16822706-16822725 None:intergenic 15.0%
!! CAAAAATATAACTTAAAAGT+TGG + chr1_3:16822704-16822723 Msa0106940:CDS 15.0%
!! TAAATTATTGATAAGTTTAG+AGG - chr1_3:16823717-16823736 None:intergenic 15.0%
!!! TTAAGGATACATTTTTTTTA+GGG - chr1_3:16823781-16823800 None:intergenic 15.0%
!!! TTTAAGGATACATTTTTTTT+AGG - chr1_3:16823782-16823801 None:intergenic 15.0%
!!! TTAAGGATACATTTTTTTTA+GGG - chr1_3:16823781-16823800 None:intergenic 15.0%
!!! TTTAAGGATACATTTTTTTT+AGG - chr1_3:16823782-16823801 None:intergenic 15.0%
!!! AAACATTTTCAAAGAAATTA+AGG - chr1_3:16824059-16824078 None:intergenic 15.0%
!! CAAAATATTTAATAGTTCAA+GGG + chr1_3:16824109-16824128 Msa0106940:intron 15.0%
!! TTTCTAATATATAAGTTTAG+AGG - chr1_3:16824429-16824448 None:intergenic 15.0%
!!! CATATCAATAGTTTTTATAT+AGG - chr1_3:16824603-16824622 None:intergenic 15.0%
!! AAAAACTATTGATATGTTTA+AGG + chr1_3:16824607-16824626 Msa0106940:intron 15.0%
!! AAAACTATTGATATGTTTAA+GGG + chr1_3:16824608-16824627 Msa0106940:intron 15.0%
!!! AAATCTCTATTTTTTTTTTG+TGG + chr1_3:16824714-16824733 Msa0106940:intron 15.0%
!!! AATCTCTATTTTTTTTTTGT+GGG + chr1_3:16824715-16824734 Msa0106940:intron 15.0%
!!! AAAGATTTAGAGATTTTTAA+AGG - chr1_3:16824743-16824762 None:intergenic 15.0%
!! AATATTATCCTATGAAAATC+GGG - chr1_3:16814488-16814507 None:intergenic 20.0%
!! CAATATTATCCTATGAAAAT+CGG - chr1_3:16814489-16814508 None:intergenic 20.0%
!!! GTGTTCAACAAAAAATATTT+TGG + chr1_3:16814710-16814729 Msa0106940:CDS 20.0%
!!! CTCTTAACTTTTAAATACAT+AGG + chr1_3:16814805-16814824 Msa0106940:intron 20.0%
!!! TTAACTTTTAAATACATAGG+TGG + chr1_3:16814808-16814827 Msa0106940:intron 20.0%
!! AAACATAAATTTGAAAAGCA+AGG - chr1_3:16815086-16815105 None:intergenic 20.0%
!!! TTAAGATTAATTGCAGTTTT+TGG - chr1_3:16815773-16815792 None:intergenic 20.0%
!!! CTAATAAAGTATCCTAATTT+TGG + chr1_3:16816063-16816082 Msa0106940:intron 20.0%
!! TATTAACTAATGCCAAAATT+AGG - chr1_3:16816078-16816097 None:intergenic 20.0%
!!! ATTTTTGGAAACAATATTAG+TGG - chr1_3:16816101-16816120 None:intergenic 20.0%
!!! GATTAGTGGTATTTTATTTT+TGG - chr1_3:16816116-16816135 None:intergenic 20.0%
!!! CAACTTGTAAGTTATATTTT+TGG - chr1_3:16816330-16816349 None:intergenic 20.0%
!! CAAAAATATAACTTACAAGT+TGG + chr1_3:16816328-16816347 Msa0106940:CDS 20.0%
!!! TTTTATATTTATTTTGGGGT+TGG - chr1_3:16816915-16816934 None:intergenic 20.0%
!! TATAAAATGATAGAAACTGA+AGG + chr1_3:16816928-16816947 Msa0106940:intron 20.0%
!!! TGAAATATTTGACTTGTTTA+TGG - chr1_3:16817085-16817104 None:intergenic 20.0%
!! GACAATGTAACATAAAAAAA+AGG - chr1_3:16817420-16817439 None:intergenic 20.0%
!!! AATTAGTAGACATTTTTAGA+TGG - chr1_3:16817483-16817502 None:intergenic 20.0%
!!! CTAAAAATGTCTACTAATTT+TGG + chr1_3:16817484-16817503 Msa0106940:intron 20.0%
!!! GATTAGTGGATTTTTATTTT+TGG - chr1_3:16817536-16817555 None:intergenic 20.0%
!! AACAAATAATTAGAGATTAG+TGG - chr1_3:16817550-16817569 None:intergenic 20.0%
!!! CAACTTGTAAGTTATATTTT+TGG - chr1_3:16816330-16816349 None:intergenic 20.0%
!! CAAAAATATAACTTACAAGT+TGG + chr1_3:16816328-16816347 Msa0106940:CDS 20.0%
!! GATATTAATTTCTTTAAGCT+TGG - chr1_3:16817846-16817865 None:intergenic 20.0%
!! TTAAAGAAATTAATATCGCA+AGG + chr1_3:16817849-16817868 Msa0106940:CDS 20.0%
!!! GTTTTTTGTTCTTTCTTATT+TGG + chr1_3:16817871-16817890 Msa0106940:intron 20.0%
!! TCAAAGAGAAAAGAATTTAA+AGG + chr1_3:16818022-16818041 Msa0106940:intron 20.0%
!!! AAGAATTTAAAGGATTTTCT+AGG + chr1_3:16818032-16818051 Msa0106940:intron 20.0%
!! TCAAATTATTGATAAGTTCA+AGG + chr1_3:16818361-16818380 Msa0106940:intron 20.0%
!!! TTTTATGTAATTAATCGTAC+CGG - chr1_3:16818583-16818602 None:intergenic 20.0%
!! AATTATTACGATAGTATTCA+TGG + chr1_3:16818766-16818785 Msa0106940:CDS 20.0%
!! ATCATATAGTAAAAATCCAA+AGG - chr1_3:16819084-16819103 None:intergenic 20.0%
!!! GATTGTTTTTAATGCTTTTT+CGG + chr1_3:16819101-16819120 Msa0106940:intron 20.0%
!!! AGTTAATTTGATTGTTAAAG+TGG + chr1_3:16819576-16819595 Msa0106940:intron 20.0%
!!! TTGTTTTATAAACCTGTTTT+TGG - chr1_3:16820217-16820236 None:intergenic 20.0%
!! GGTTTATAAAACAAATGAAA+TGG + chr1_3:16820223-16820242 Msa0106940:intron 20.0%
!! ATAAATTGTCTCTTGTAAAT+AGG - chr1_3:16820527-16820546 None:intergenic 20.0%
!!! ACAATTTATGTATTTGGTTT+AGG + chr1_3:16820563-16820582 Msa0106940:intron 20.0%
!!! TTAATACTATTGACTATTGA+TGG - chr1_3:16820878-16820897 None:intergenic 20.0%
!! AATATTATCCTATGAAAATC+GGG - chr1_3:16814488-16814507 None:intergenic 20.0%
!! CAATATTATCCTATGAAAAT+CGG - chr1_3:16814489-16814508 None:intergenic 20.0%
!!! GTGTTCAACAAAAAATATTT+TGG + chr1_3:16814710-16814729 Msa0106940:CDS 20.0%
!! TATTTCAAGGTTAAGATATT+TGG + chr1_3:16821397-16821416 Msa0106940:intron 20.0%
!!! TTCATCAACAGATTTTATAT+TGG - chr1_3:16821449-16821468 None:intergenic 20.0%
!!! AGATTTGAAACAAAAATGAA+GGG - chr1_3:16821641-16821660 None:intergenic 20.0%
!!! CTTAATTTCAAGTAATAGTT+TGG + chr1_3:16821786-16821805 Msa0106940:intron 20.0%
!!! TCATTTCAATTTTGTCTTTT+TGG + chr1_3:16821825-16821844 Msa0106940:intron 20.0%
!!! TTCATGTTTCAATTTTCTTA+TGG - chr1_3:16821926-16821945 None:intergenic 20.0%
!!! CATGAATTTTAAGTTTTTTG+AGG + chr1_3:16821940-16821959 Msa0106940:intron 20.0%
!!! AAACTCTGAAATTAAGTTAA+AGG + chr1_3:16822004-16822023 Msa0106940:intron 20.0%
!! GTCATTAAAACTTCAAAAAA+GGG - chr1_3:16822155-16822174 None:intergenic 20.0%
!! TGTCATTAAAACTTCAAAAA+AGG - chr1_3:16822156-16822175 None:intergenic 20.0%
!! TCTAAAAATGTCTACTAATT+TGG + chr1_3:16817483-16817502 Msa0106940:intron 20.0%
!! ATAGTAATAGTGAATAAAAG+TGG - chr1_3:16822764-16822783 None:intergenic 20.0%
!!! CATTTTTTTTAGGGAATTTA+AGG - chr1_3:16823772-16823791 None:intergenic 20.0%
!! TTGAACCTTACAAAATATTT+AGG + chr1_3:16823906-16823925 Msa0106940:intron 20.0%
!!! GAATTCCTAAATATTTTGTA+AGG - chr1_3:16823914-16823933 None:intergenic 20.0%
!!! CACATCAATAATTTGTATAT+AGG - chr1_3:16823962-16823981 None:intergenic 20.0%
!! ACAAATTATTGATGTGTTTA+AGG + chr1_3:16823966-16823985 Msa0106940:intron 20.0%
!! GCAAAATATTTAATAGTTCA+AGG + chr1_3:16824108-16824127 Msa0106940:intron 20.0%
!! ATGAAAATAGTAATCTAAAG+AGG + chr1_3:16824257-16824276 Msa0106940:intron 20.0%
!!! ACTTTTAAATAATTTGCGAA+TGG + chr1_3:16824522-16824541 Msa0106940:intron 20.0%
!!! CTTTTAAATAATTTGCGAAT+GGG + chr1_3:16824523-16824542 Msa0106940:intron 20.0%
!!! TCAGTAAATAAATTTTTCGT+TGG + chr1_3:16824575-16824594 Msa0106940:intron 20.0%
!! AAAATATATAACCATTTGGT+TGG + chr1_3:16824790-16824809 Msa0106940:intron 20.0%
!! AGGGTAAATTACATAAAATA+CGG + chr1_3:16824994-16825013 Msa0106940:intron 20.0%
!! AAAGAATGTAAAGTGAAAAT+TGG + chr1_3:16825238-16825257 Msa0106940:CDS 20.0%
! ATATTATCCTATGAAAATCG+GGG - chr1_3:16814487-16814506 None:intergenic 25.0%
! TTGGGAATTTAAGGAATATT+GGG - chr1_3:16814687-16814706 None:intergenic 25.0%
! TTTGGGAATTTAAGGAATAT+TGG - chr1_3:16814688-16814707 None:intergenic 25.0%
! ATATTCCTTAAATTCCCAAA+TGG + chr1_3:16814688-16814707 Msa0106940:CDS 25.0%
!!! TTTTTTGTTGAACACCATTT+GGG - chr1_3:16814705-16814724 None:intergenic 25.0%
!!! ATTTTTTGTTGAACACCATT+TGG - chr1_3:16814706-16814725 None:intergenic 25.0%
!!! TCAACAAAAAATATTTTGGG+TGG + chr1_3:16814714-16814733 Msa0106940:CDS 25.0%
!!! TTTGCAAAGTTTCTGAAATA+TGG + chr1_3:16814778-16814797 Msa0106940:CDS 25.0%
! TATTTCAAGGTTCAGATATT+TGG + chr1_3:16814835-16814854 Msa0106940:CDS 25.0%
!!! TTCATCAATGGATTTTATGT+TGG - chr1_3:16814887-16814906 None:intergenic 25.0%
!! TATTTTCTTACATATGAGAC+TGG - chr1_3:16815186-16815205 None:intergenic 25.0%
!!! TATTTTCTTACATTTGAGAC+CGG + chr1_3:16815295-16815314 Msa0106940:intron 25.0%
! AATATCTAAAAGCTGCATAA+TGG + chr1_3:16815436-16815455 Msa0106940:intron 25.0%
! TTAAAATAAGCTGCATAAAG+TGG + chr1_3:16815466-16815485 Msa0106940:intron 25.0%
! TAAAATAAGCTGCATAAAGT+GGG + chr1_3:16815467-16815486 Msa0106940:intron 25.0%
!!! CTTATCCATTTTTGCATTTT+TGG + chr1_3:16815631-16815650 Msa0106940:intron 25.0%
!! GTGTAACTTTCTATTTCTTA+GGG + chr1_3:16815715-16815734 Msa0106940:intron 25.0%
!! TGTAACTTTCTATTTCTTAG+GGG + chr1_3:16815716-16815735 Msa0106940:intron 25.0%
! ATCGTAAAATTGTGATACTT+AGG + chr1_3:16815744-16815763 Msa0106940:intron 25.0%
! TCGTAAAATTGTGATACTTA+GGG + chr1_3:16815745-16815764 Msa0106940:intron 25.0%
! CACACTTGAACAAATTTAAA+GGG + chr1_3:16816200-16816219 Msa0106940:CDS 25.0%
! ATAGTAACAAGAAATGAAAG+TGG - chr1_3:16816388-16816407 None:intergenic 25.0%
! TCAAAGAAATTAAAATCGCA+AGG + chr1_3:16816433-16816452 Msa0106940:CDS 25.0%
! TTCTTTATAACCTGGTAATT+GGG - chr1_3:16816554-16816573 None:intergenic 25.0%
! AATTACCAGGTTATAAAGAA+GGG + chr1_3:16816554-16816573 Msa0106940:intron 25.0%
! TAAAAAATAAACCAAAAGGG+TGG + chr1_3:16816874-16816893 Msa0106940:intron 25.0%
! CACACTTGAACAAATTTAAA+GGG + chr1_3:16816200-16816219 Msa0106940:CDS 25.0%
!!! TACTTTCAAGATGATTTGTT+GGG - chr1_3:16818063-16818082 None:intergenic 25.0%
!! ATACTTTCAAGATGATTTGT+TGG - chr1_3:16818064-16818083 None:intergenic 25.0%
!! ACATCAATCTTGAATGTTTT+AGG - chr1_3:16818547-16818566 None:intergenic 25.0%
! TTTATGTAATTAATCGTACC+GGG - chr1_3:16818582-16818601 None:intergenic 25.0%
! ATTCATAAAAGAATGCAAAG+TGG + chr1_3:16818816-16818835 Msa0106940:CDS 25.0%
! GTATTTGATGTTTCAATTGT+AGG + chr1_3:16818886-16818905 Msa0106940:intron 25.0%
! ATACGAAGCTTAAAATCATA+GGG - chr1_3:16819006-16819025 None:intergenic 25.0%
! AATACGAAGCTTAAAATCAT+AGG - chr1_3:16819007-16819026 None:intergenic 25.0%
! AAGTGGTGAATTTAAATAGA+TGG + chr1_3:16819593-16819612 Msa0106940:intron 25.0%
! TATTCCTTTGTAAGATACAT+GGG - chr1_3:16819820-16819839 None:intergenic 25.0%
!! TCTTTAGAAATGTTGACATT+TGG - chr1_3:16819950-16819969 None:intergenic 25.0%
! ATTAATTCGTGAAATTTCGT+AGG - chr1_3:16820000-16820019 None:intergenic 25.0%
! ATGCTTAGAAATTATATGAG+GGG - chr1_3:16820136-16820155 None:intergenic 25.0%
! GATGCTTAGAAATTATATGA+GGG - chr1_3:16820137-16820156 None:intergenic 25.0%
! AGATGCTTAGAAATTATATG+AGG - chr1_3:16820138-16820157 None:intergenic 25.0%
! AACTCTTTCAAAGAGAAAAA+GGG - chr1_3:16820371-16820390 None:intergenic 25.0%
! TAACTCTTTCAAAGAGAAAA+AGG - chr1_3:16820372-16820391 None:intergenic 25.0%
! TAATTGAATGGGAAAATGTT+GGG - chr1_3:16820796-16820815 None:intergenic 25.0%
! ATAATTGAATGGGAAAATGT+TGG - chr1_3:16820797-16820816 None:intergenic 25.0%
!! TGTAATGGAGATAATTGAAT+GGG - chr1_3:16820807-16820826 None:intergenic 25.0%
!! TTGTAATGGAGATAATTGAA+TGG - chr1_3:16820808-16820827 None:intergenic 25.0%
! TCAATTATCTCCATTACAAT+TGG + chr1_3:16820809-16820828 Msa0106940:intron 25.0%
!! AATATATTCCCGATTTTCAT+AGG + chr1_3:16821045-16821064 Msa0106940:intron 25.0%
! AATTTCTCCACATATTTCTT+GGG - chr1_3:16821208-16821227 None:intergenic 25.0%
! AAATTTCTCCACATATTTCT+TGG - chr1_3:16821209-16821228 None:intergenic 25.0%
!! AGAAATATGTGGAGAAATTT+TGG + chr1_3:16821209-16821228 Msa0106940:CDS 25.0%
! TTGGTAAGTTAAGGAATATT+GGG - chr1_3:16821249-16821268 None:intergenic 25.0%
! TTTGGTAAGTTAAGGAATAT+TGG - chr1_3:16821250-16821269 None:intergenic 25.0%
! ATATTCCTTAACTTACCAAA+TGG + chr1_3:16821250-16821269 Msa0106940:CDS 25.0%
!!! ATTTTTTGTTGAACACCATT+TGG - chr1_3:16814706-16814725 None:intergenic 25.0%
!!! ATATTTTGGGTAGAGAATAA+TGG + chr1_3:16821286-16821305 Msa0106940:intron 25.0%
! TAGAGAATAATGGTGATATT+TGG + chr1_3:16821296-16821315 Msa0106940:intron 25.0%
! AAGCTCAAATGATAACAAAT+GGG + chr1_3:16821536-16821555 Msa0106940:CDS 25.0%
! CAAAAATGAAGGGAAAAAAA+TGG - chr1_3:16821631-16821650 None:intergenic 25.0%
!! CAGATTTGAAACAAAAATGA+AGG - chr1_3:16821642-16821661 None:intergenic 25.0%
!!! TAACAAATTAACTCTAAAGC+AGG + chr1_3:16822047-16822066 Msa0106940:intron 25.0%
! AAAAAAGGGATTCTCATTAT+TGG - chr1_3:16815983-16816002 None:intergenic 25.0%
! ATAGTGCACATTACAAAAAT+TGG + chr1_3:16822461-16822480 Msa0106940:intron 25.0%
!!! ATTGGTCATGTATTTTGAAA+CGG + chr1_3:16822479-16822498 Msa0106940:intron 25.0%
! TGTGATTCATGAATTGAAAT+AGG + chr1_3:16822529-16822548 Msa0106940:intron 25.0%
! TCATACTTGAACAAATTTGA+AGG + chr1_3:16822575-16822594 Msa0106940:intron 25.0%
! CATACTTGAACAAATTTGAA+GGG + chr1_3:16822576-16822595 Msa0106940:intron 25.0%
! TCTTCTAATTCTATGACTAT+TGG + chr1_3:16822665-16822684 Msa0106940:CDS 25.0%
!! ATGATCATGATATTCTAAAG+AGG + chr1_3:16823531-16823550 Msa0106940:intron 25.0%
! AAGTTAGAAGATTATACCAT+GGG - chr1_3:16823603-16823622 None:intergenic 25.0%
! AAAGTTAGAAGATTATACCA+TGG - chr1_3:16823604-16823623 None:intergenic 25.0%
! TTAAATCTTTCAGCTCAAAA+AGG - chr1_3:16823742-16823761 None:intergenic 25.0%
!!! CATTTTTTTTAGGGAGTTTA+AGG - chr1_3:16823798-16823817 None:intergenic 25.0%
! AATCTAAAGAGGAAATACAT+TGG + chr1_3:16824268-16824287 Msa0106940:intron 25.0%
!! TTTAGATTTTACTATTGCGA+AGG + chr1_3:16824359-16824378 Msa0106940:intron 25.0%
!! ATTTTGTGTGTAGAATCAAA+GGG + chr1_3:16824914-16824933 Msa0106940:intron 25.0%
!! TTTTATGTAATTTACCCTAC+CGG - chr1_3:16824992-16825011 None:intergenic 25.0%
! AAAATTTGTGGAGTTGAAAA+TGG + chr1_3:16825132-16825151 Msa0106940:CDS 25.0%
! AAATTTGTGGAGTTGAAAAT+GGG + chr1_3:16825133-16825152 Msa0106940:CDS 25.0%
! ATTTATTATCCTAGTATTCG+TGG + chr1_3:16825181-16825200 Msa0106940:CDS 25.0%
! AAAATATCCCCGATTTTCAT+AGG + chr1_3:16814477-16814496 Msa0106940:CDS 30.0%
GCAAACACACATAAATGAAA+CGG - chr1_3:16814577-16814596 None:intergenic 30.0%
!!! TTTTGAAATTCTTGTTGCAG+AGG + chr1_3:16814617-16814636 Msa0106940:intron 30.0%
GAGAAAAAATAGTGTGGATT+TGG + chr1_3:16815023-16815042 Msa0106940:CDS 30.0%
ATCCTATAGCAAGAAAGAAA+AGG - chr1_3:16815125-16815144 None:intergenic 30.0%
AAATTGTAATATACTCCCTC+CGG - chr1_3:16815317-16815336 None:intergenic 30.0%
ATGCAAAAATGGATAAGCTT+AGG - chr1_3:16815628-16815647 None:intergenic 30.0%
!! TGCATTGACTTGATCAAAAT+TGG - chr1_3:16815666-16815685 None:intergenic 30.0%
! GGTGTAACTTTCTATTTCTT+AGG + chr1_3:16815714-16815733 Msa0106940:intron 30.0%
CGTAAAATTGTGATACTTAG+GGG + chr1_3:16815746-16815765 Msa0106940:intron 30.0%
GTAAAATTGTGATACTTAGG+GGG + chr1_3:16815747-16815766 Msa0106940:intron 30.0%
CTTTCATTAACAACTTCAAC+TGG - chr1_3:16815958-16815977 None:intergenic 30.0%
GTTGAAGTTGTTAATGAAAG+TGG + chr1_3:16815958-16815977 Msa0106940:intron 30.0%
GGCAATGTAACATCAAAAAA+GGG - chr1_3:16815997-16816016 None:intergenic 30.0%
TGGCAATGTAACATCAAAAA+AGG - chr1_3:16815998-16816017 None:intergenic 30.0%
AGGATACTTTATTAGCTAGT+AGG - chr1_3:16816058-16816077 None:intergenic 30.0%
GCACACTTGAACAAATTTAA+AGG + chr1_3:16816199-16816218 Msa0106940:CDS 30.0%
GGGATTGCAAATTTAATAGT+TGG + chr1_3:16816220-16816239 Msa0106940:CDS 30.0%
! TGCAAATTTAATAGTTGGTG+AGG + chr1_3:16816225-16816244 Msa0106940:CDS 30.0%
TTGTTACTATTACTCCATCA+AGG + chr1_3:16816398-16816417 Msa0106940:CDS 30.0%
TGTTACTATTACTCCATCAA+GGG + chr1_3:16816399-16816418 Msa0106940:CDS 30.0%
CTTCTTTATAACCTGGTAAT+TGG - chr1_3:16816555-16816574 None:intergenic 30.0%
CAATTACCAGGTTATAAAGA+AGG + chr1_3:16816553-16816572 Msa0106940:intron 30.0%
!! TTTCAAGACGATGATTTGTT+GGG - chr1_3:16816639-16816658 None:intergenic 30.0%
AAAATGATAGAAACTGAAGG+AGG + chr1_3:16816931-16816950 Msa0106940:intron 30.0%
AAATGATAGAAACTGAAGGA+GGG + chr1_3:16816932-16816951 Msa0106940:intron 30.0%
!! CACTCTTTAAGACCTTTAAA+AGG - chr1_3:16817149-16817168 None:intergenic 30.0%
!! TTGCAAATGAACTCTAAAGT+AGG + chr1_3:16817279-16817298 Msa0106940:intron 30.0%
TGATGAGTATATTACTTTGC+AGG + chr1_3:16817312-16817331 Msa0106940:intron 30.0%
AGTATATTACTTTGCAGGTA+GGG + chr1_3:16817317-16817336 Msa0106940:intron 30.0%
TGTACATGATGAATTGAAAC+AGG + chr1_3:16817569-16817588 Msa0106940:intron 30.0%
TGTGCTCTTGAAAAATTACT+TGG - chr1_3:16817600-16817619 None:intergenic 30.0%
GCACACTTGAACAAATTTAA+AGG + chr1_3:16816199-16816218 Msa0106940:CDS 30.0%
TTCCTTATAACCTGGTAATT+GGG - chr1_3:16817978-16817997 None:intergenic 30.0%
AATTACCAGGTTATAAGGAA+GGG + chr1_3:16817978-16817997 Msa0106940:intron 30.0%
! ATCATTTCAAAGTTCTAGCT+AGG + chr1_3:16818299-16818318 Msa0106940:intron 30.0%
! TCATTTCAAAGTTCTAGCTA+GGG + chr1_3:16818300-16818319 Msa0106940:intron 30.0%
TGATGTGTATTCAAAATACC+CGG + chr1_3:16818561-16818580 Msa0106940:CDS 30.0%
ATATTTGCAGAATGTTCCAA+AGG + chr1_3:16818669-16818688 Msa0106940:intron 30.0%
!! AAACTCTCTGGAATTGAAAA+TGG + chr1_3:16818717-16818736 Msa0106940:CDS 30.0%
!! AACTCTCTGGAATTGAAAAT+GGG + chr1_3:16818718-16818737 Msa0106940:CDS 30.0%
ACGATAGTATTCATGGTTAT+AGG + chr1_3:16818773-16818792 Msa0106940:CDS 30.0%
GCTTGTTCTATTGTTCTTTA+AGG + chr1_3:16818925-16818944 Msa0106940:intron 30.0%
GCTTAGATTCAAATGAAACT+TGG - chr1_3:16819046-16819065 None:intergenic 30.0%
CTAAGTTAAACAAACCAAAC+TGG - chr1_3:16819194-16819213 None:intergenic 30.0%
CATAACATCCTTGTTCTTAA+TGG + chr1_3:16819235-16819254 Msa0106940:intron 30.0%
TTCTTAATGGTGTGATTCAT+TGG + chr1_3:16819248-16819267 Msa0106940:intron 30.0%
!!! TCAAGTTCGGTTATTTTAAC+GGG - chr1_3:16819351-16819370 None:intergenic 30.0%
!!! CTCAAGTTCGGTTATTTTAA+CGG - chr1_3:16819352-16819371 None:intergenic 30.0%
!!! ATTTTATCCCCTTTGAAACA+CGG - chr1_3:16819509-16819528 None:intergenic 30.0%
TTTACCCATGTATCTTACAA+AGG + chr1_3:16819813-16819832 Msa0106940:intron 30.0%
GTATTCCTTTGTAAGATACA+TGG - chr1_3:16819821-16819840 None:intergenic 30.0%
GTATCTTACAAAGGAATACT+AGG + chr1_3:16819822-16819841 Msa0106940:intron 30.0%
TAAACCATTATATAGTAGCG+AGG + chr1_3:16820042-16820061 Msa0106940:intron 30.0%
! CATCTTTGTAACAATTTTGC+TGG + chr1_3:16820153-16820172 Msa0106940:intron 30.0%
!! CAACTGATTTTTCCAAAAAC+AGG + chr1_3:16820202-16820221 Msa0106940:intron 30.0%
! TTCTCTTTGAAAGAGTTAAG+CGG + chr1_3:16820374-16820393 Msa0106940:intron 30.0%
ACTTTCTACACTAAGTATGT+GGG - chr1_3:16820404-16820423 None:intergenic 30.0%
ACATACTTAGTGTAGAAAGT+GGG + chr1_3:16820404-16820423 Msa0106940:intron 30.0%
GTCAACTTTCTCTTGTAAAT+AGG + chr1_3:16820626-16820645 Msa0106940:intron 30.0%
GTATAAAATTATACTCCCTC+CGG - chr1_3:16820653-16820672 None:intergenic 30.0%
TCATTGAATGGGAAAATGTT+GGG - chr1_3:16820765-16820784 None:intergenic 30.0%
TTTCATTGGTCCTTACTATT+GGG - chr1_3:16820844-16820863 None:intergenic 30.0%
! TTTTCATTGGTCCTTACTAT+TGG - chr1_3:16820845-16820864 None:intergenic 30.0%
!! AGTATTAAAACATTTTGGCG+TGG + chr1_3:16820890-16820909 Msa0106940:intron 30.0%
CACGAAGAAATTAGAAACAA+TGG - chr1_3:16821001-16821020 None:intergenic 30.0%
TATGAATTTCTTTGTTGCAG+AGG + chr1_3:16821179-16821198 Msa0106940:intron 30.0%
!! TATGTGGAGAAATTTTGGAA+AGG + chr1_3:16821214-16821233 Msa0106940:CDS 30.0%
TTTGCAAAGTCTCTCAAATA+TGG + chr1_3:16821340-16821359 Msa0106940:intron 30.0%
! TATTGGTGGATCATATTTCA+AGG + chr1_3:16821384-16821403 Msa0106940:intron 30.0%
TGATGAGAATGAAATACCAA+TGG + chr1_3:16821513-16821532 Msa0106940:CDS 30.0%
GAAGCTCAAATGATAACAAA+TGG + chr1_3:16821535-16821554 Msa0106940:CDS 30.0%
ATCAAATGAATTTCTCACCT+GGG - chr1_3:16821606-16821625 None:intergenic 30.0%
AATCAAATGAATTTCTCACC+TGG - chr1_3:16821607-16821626 None:intergenic 30.0%
! GATTTGAAGCTTAATGCAAA+TGG - chr1_3:16821852-16821871 None:intergenic 30.0%
!!! TAAGTTTTTTGAGGGACAAA+AGG + chr1_3:16821949-16821968 Msa0106940:intron 30.0%
!! AAATTAACTCTAAAGCAGGT+AGG + chr1_3:16822051-16822070 Msa0106940:intron 30.0%
!! CTTGGACATGTATTTTGAAA+CGG - chr1_3:16822258-16822277 None:intergenic 30.0%
TATGATCTTGAAAAGTTGCA+TGG - chr1_3:16822560-16822579 None:intergenic 30.0%
CTAATTCTATGACTATTGGT+TGG + chr1_3:16822669-16822688 Msa0106940:CDS 30.0%
AAAAACCTTGCAACTTCTTA+GGG - chr1_3:16822811-16822830 None:intergenic 30.0%
AATTTCTTTGATCCATGACA+AGG + chr1_3:16823098-16823117 Msa0106940:intron 30.0%
TCTTCTTTATAACCTTGTCA+TGG - chr1_3:16823113-16823132 None:intergenic 30.0%
GTCATGGATGAAAGAAATTA+AGG - chr1_3:16823288-16823307 None:intergenic 30.0%
AATTTCTTTCATCCATGACA+AGG + chr1_3:16823289-16823308 Msa0106940:intron 30.0%
CATGACAAGGTTATAAAGAA+GGG + chr1_3:16823111-16823130 Msa0106940:intron 30.0%
TATAAAGAAGGGATCTCTTA+TGG + chr1_3:16823313-16823332 Msa0106940:CDS 30.0%
GTCATGGATCAAAGAAATTA+AGG - chr1_3:16823097-16823116 None:intergenic 30.0%
AATTTCTTTGATCCATGACA+AGG + chr1_3:16823098-16823117 Msa0106940:intron 30.0%
CATGACAAGGTTATAAAGAA+GGG + chr1_3:16823111-16823130 Msa0106940:intron 30.0%
! ATTCTAAAGAGGAAAGACAT+TGG + chr1_3:16823542-16823561 Msa0106940:intron 30.0%
CATGAATAATAACTGAACAC+TGG - chr1_3:16823936-16823955 None:intergenic 30.0%
CAGTGTTCAGTTATTATTCA+TGG + chr1_3:16823934-16823953 Msa0106940:intron 30.0%
AGATCCTTTCTTTATAACCT+GGG - chr1_3:16824231-16824250 None:intergenic 30.0%
AATACATTGGAGAAACTTGT+AGG + chr1_3:16824281-16824300 Msa0106940:intron 30.0%
!!! TTTTGGGACCCAATAAAAAT+AGG + chr1_3:16824683-16824702 Msa0106940:intron 30.0%
! TCCCAAATGTCAATTTTTGT+AGG + chr1_3:16824849-16824868 Msa0106940:intron 30.0%
GCCTACAAAAATTGACATTT+GGG - chr1_3:16824853-16824872 None:intergenic 30.0%
AGCCTACAAAAATTGACATT+TGG - chr1_3:16824854-16824873 None:intergenic 30.0%
! CATTTTGTGTGTAGAATCAA+AGG + chr1_3:16824913-16824932 Msa0106940:intron 30.0%
GATGAAACACAATACATTCA+AGG + chr1_3:16824946-16824965 Msa0106940:intron 30.0%
! ACACAATACATTCAAGGTTT+TGG + chr1_3:16824952-16824971 Msa0106940:intron 30.0%
TTTATGTAATTTACCCTACC+GGG - chr1_3:16824991-16825010 None:intergenic 30.0%
AATTTGTGGAGTTGAAAATG+GGG + chr1_3:16825134-16825153 Msa0106940:CDS 30.0%
! TGTGTTTAAAGTTTCCATTG+TGG + chr1_3:16825300-16825319 Msa0106940:CDS 30.0%
! GTGTTTAAAGTTTCCATTGT+GGG + chr1_3:16825301-16825320 Msa0106940:CDS 30.0%
AAGTTCTCCACATACTTCTT+GGG - chr1_3:16814646-16814665 None:intergenic 35.0%
AAAGTTCTCCACATACTTCT+TGG - chr1_3:16814647-16814666 None:intergenic 35.0%
!! AGAAGTATGTGGAGAACTTT+TGG + chr1_3:16814647-16814666 Msa0106940:CDS 35.0%
!! TATGTGGAGAACTTTTGGAA+AGG + chr1_3:16814652-16814671 Msa0106940:CDS 35.0%
GAACACCATTTGGGAATTTA+AGG - chr1_3:16814696-16814715 None:intergenic 35.0%
!! ATATTTTGGGTGGAGAGTAA+TGG + chr1_3:16814724-16814743 Msa0106940:CDS 35.0%
! TGGAGAGTAATGGAGATATT+TGG + chr1_3:16814734-16814753 Msa0106940:CDS 35.0%
CATAGGTGGATCATATTTCA+AGG + chr1_3:16814822-16814841 Msa0106940:intron 35.0%
AGCTTCAACAACTTCATCAA+TGG - chr1_3:16814899-16814918 None:intergenic 35.0%
GCTACAGAAAAAGCTAAAGA+AGG + chr1_3:16814916-16814935 Msa0106940:CDS 35.0%
! TTTTCTTGTCCTTTGAGCTT+GGG - chr1_3:16814995-16815014 None:intergenic 35.0%
! TTTTTCTTGTCCTTTGAGCT+TGG - chr1_3:16814996-16815015 None:intergenic 35.0%
GCTCAAAGGACAAGAAAAAA+TGG + chr1_3:16814997-16815016 Msa0106940:CDS 35.0%
TGGCAAGAGAAAAAATAGTG+TGG + chr1_3:16815017-16815036 Msa0106940:CDS 35.0%
! AAGAACTCACCTGAGAATTT+TGG - chr1_3:16815060-16815079 None:intergenic 35.0%
!! CTCCTTTTCTTTCTTGCTAT+AGG + chr1_3:16815120-16815139 Msa0106940:intron 35.0%
TTCTTACATATGAGACTGGA+GGG - chr1_3:16815182-16815201 None:intergenic 35.0%
TTTCTTACATATGAGACTGG+AGG - chr1_3:16815183-16815202 None:intergenic 35.0%
GAGGACCAAAAATGCAAAAA+TGG - chr1_3:16815639-16815658 None:intergenic 35.0%
TGACTTGATCAAAATTGGTC+TGG - chr1_3:16815661-16815680 None:intergenic 35.0%
! TGCATTGACCCAATCAAAAT+TGG + chr1_3:16815820-16815839 Msa0106940:intron 35.0%
TGATGAGTATATTCCTTTGC+AGG + chr1_3:16815889-16815908 Msa0106940:intron 35.0%
GGTCCATGATGAATTGAAAT+AGG + chr1_3:16816153-16816172 Msa0106940:intron 35.0%
CCACCTATTTCAATTCATCA+TGG - chr1_3:16816159-16816178 None:intergenic 35.0%
CCATGATGAATTGAAATAGG+TGG + chr1_3:16816156-16816175 Msa0106940:intron 35.0%
TGTGCTCTTGAAAAATCACT+TGG - chr1_3:16816184-16816203 None:intergenic 35.0%
GGGATCAAAGAAAAAGAAGT+TGG - chr1_3:16816534-16816553 None:intergenic 35.0%
TTTCTTTGATCCCAATTACC+AGG + chr1_3:16816541-16816560 Msa0106940:intron 35.0%
GGTGATAATCCAAAGAGAAA+AGG + chr1_3:16816589-16816608 Msa0106940:CDS 35.0%
! CCTTCAAATCCTTTTCTCTT+TGG - chr1_3:16816601-16816620 None:intergenic 35.0%
CCAAAGAGAAAAGGATTTGA+AGG + chr1_3:16816598-16816617 Msa0106940:CDS 35.0%
AAGGATTTGAAGGAACTTCT+AGG + chr1_3:16816608-16816627 Msa0106940:CDS 35.0%
! CTTTCAAGACGATGATTTGT+TGG - chr1_3:16816640-16816659 None:intergenic 35.0%
AATGATAGAAACTGAAGGAG+GGG + chr1_3:16816933-16816952 Msa0106940:intron 35.0%
ATGCTTAAAGAATGTCTCAG+AGG - chr1_3:16817043-16817062 None:intergenic 35.0%
!! AAAGGTCTTAAAGAGTGTCT+CGG + chr1_3:16817152-16817171 Msa0106940:intron 35.0%
GAGTATATTACTTTGCAGGT+AGG + chr1_3:16817316-16817335 Msa0106940:intron 35.0%
CTCTCATTAACAACTTCAAC+TGG - chr1_3:16817381-16817400 None:intergenic 35.0%
TTGTCAAAATCTTACGTCCA+TGG + chr1_3:16817435-16817454 Msa0106940:CDS 35.0%
GGGATTGCAAATTTAAGAGT+TGG + chr1_3:16817636-16817655 Msa0106940:CDS 35.0%
!! TGCAAATTTAAGAGTTGGTG+AGG + chr1_3:16817641-16817660 Msa0106940:CDS 35.0%
ATAGTAACGGTGAATGAAAG+TGG - chr1_3:16817804-16817823 None:intergenic 35.0%
CCTTGATGGAGTAATAGTAA+CGG - chr1_3:16816401-16816420 None:intergenic 35.0%
CGTTACTATTACTCCATCAA+GGG + chr1_3:16817815-16817834 Msa0106940:CDS 35.0%
ATTCTTTGATCCCAATTACC+AGG + chr1_3:16817965-16817984 Msa0106940:intron 35.0%
ATCCCAATTACCAGGTTATA+AGG + chr1_3:16816549-16816568 Msa0106940:intron 35.0%
CTTCCTTATAACCTGGTAAT+TGG - chr1_3:16817979-16817998 None:intergenic 35.0%
CAATTACCAGGTTATAAGGA+AGG + chr1_3:16817977-16817996 Msa0106940:intron 35.0%
TGAATTATCACCACAAGAAG+AGG - chr1_3:16818005-16818024 None:intergenic 35.0%
! CCTCTTTTCATAAACTCCTT+TGG - chr1_3:16818688-16818707 None:intergenic 35.0%
CCAAAGGAGTTTATGAAAAG+AGG + chr1_3:16818685-16818704 Msa0106940:CDS 35.0%
!! ACTCTCTGGAATTGAAAATG+GGG + chr1_3:16818719-16818738 Msa0106940:CDS 35.0%
AAAGAATGCAAAGTGGAGAT+TGG + chr1_3:16818823-16818842 Msa0106940:CDS 35.0%
ACAATAGAACAAGCAGCTAA+GGG - chr1_3:16818919-16818938 None:intergenic 35.0%
AACAATAGAACAAGCAGCTA+AGG - chr1_3:16818920-16818939 None:intergenic 35.0%
CAAATATCATGATCAGCCTT+TGG + chr1_3:16819065-16819084 Msa0106940:intron 35.0%
TTAAACAAACCAAACTGGAG+AGG - chr1_3:16819189-16819208 None:intergenic 35.0%
TTATGATCGTGAAATTGGAG+CGG - chr1_3:16819220-16819239 None:intergenic 35.0%
GGATGTTATGATCGTGAAAT+TGG - chr1_3:16819225-16819244 None:intergenic 35.0%
GAATCACACCATTAAGAACA+AGG - chr1_3:16819246-16819265 None:intergenic 35.0%
! TGGGTTTGTAAAAGCACAAT+TGG + chr1_3:16819287-16819306 Msa0106940:intron 35.0%
! TGTAAAAGCACAATTGGTGT+TGG + chr1_3:16819293-16819312 Msa0106940:intron 35.0%
TGCGTAAGTTAACTCAAGTT+CGG - chr1_3:16819364-16819383 None:intergenic 35.0%
!!! CACAGGTGTATTTTTTTAGC+CGG + chr1_3:16819409-16819428 Msa0106940:intron 35.0%
ATCATGATTTCGAATCCACA+TGG + chr1_3:16819533-16819552 Msa0106940:intron 35.0%
GTTCATTAATCAAGTCCATG+TGG - chr1_3:16819551-16819570 None:intergenic 35.0%
AGTGAGATATCAAGAGGTTA+GGG - chr1_3:16819708-16819727 None:intergenic 35.0%
TAACCTCTTGATATCTCACT+CGG + chr1_3:16819708-16819727 Msa0106940:intron 35.0%
!! TTGACATTTGGCTCAACTTT+TGG - chr1_3:16819938-16819957 None:intergenic 35.0%
AATGCCTCGCTACTATATAA+TGG - chr1_3:16820049-16820068 None:intergenic 35.0%
TTGAGTTTAACTCAGTTGGT+AGG + chr1_3:16820081-16820100 Msa0106940:intron 35.0%
! TGAGTTTAACTCAGTTGGTA+GGG + chr1_3:16820082-16820101 Msa0106940:intron 35.0%
CACTTTCTACACTAAGTATG+TGG - chr1_3:16820405-16820424 None:intergenic 35.0%
CACATACTTAGTGTAGAAAG+TGG + chr1_3:16820403-16820422 Msa0106940:intron 35.0%
CATACTTAGTGTAGAAAGTG+GGG + chr1_3:16820405-16820424 Msa0106940:intron 35.0%
ACATGAACATACACTTCATC+CGG + chr1_3:16820500-16820519 Msa0106940:intron 35.0%
TTGTCTCTTGTAAATAGGAC+CGG - chr1_3:16820522-16820541 None:intergenic 35.0%
CTTTCTCTTGTAAATAGGAC+CGG + chr1_3:16820631-16820650 Msa0106940:intron 35.0%
ATTGAATGGGAAAATGTTGG+GGG - chr1_3:16820763-16820782 None:intergenic 35.0%
CATTGAATGGGAAAATGTTG+GGG - chr1_3:16820764-16820783 None:intergenic 35.0%
GTCATTGAATGGGAAAATGT+TGG - chr1_3:16820766-16820785 None:intergenic 35.0%
GGGATATCATGTCATTGAAT+GGG - chr1_3:16820776-16820795 None:intergenic 35.0%
TGGGATATCATGTCATTGAA+TGG - chr1_3:16820777-16820796 None:intergenic 35.0%
GGACCAATGAAAATAAACAC+CGG + chr1_3:16820852-16820871 Msa0106940:intron 35.0%
! TACTATTGACTATTGATGGC+CGG - chr1_3:16820874-16820893 None:intergenic 35.0%
GAACACCATTTGGTAAGTTA+AGG - chr1_3:16821258-16821277 None:intergenic 35.0%
GTTATCATTTGAGCTTCCAT+TGG - chr1_3:16821532-16821551 None:intergenic 35.0%
ACTCTTAAGCAAAAATTCCC+AGG + chr1_3:16821586-16821605 Msa0106940:CDS 35.0%
ACTTACCAAGATATGACCAT+GGG - chr1_3:16822189-16822208 None:intergenic 35.0%
TACTTACCAAGATATGACCA+TGG - chr1_3:16822190-16822209 None:intergenic 35.0%
!!! GACATGTATTTTGAAACGGA+GGG - chr1_3:16822254-16822273 None:intergenic 35.0%
TAACGGTCAAAATTGTGCAT+TGG - chr1_3:16822299-16822318 None:intergenic 35.0%
!!! GTCATGTATTTTGAAACGGA+GGG + chr1_3:16822483-16822502 Msa0106940:intron 35.0%
CTATATCCACTTTCATAGCA+GGG - chr1_3:16822628-16822647 None:intergenic 35.0%
ACTATATCCACTTTCATAGC+AGG - chr1_3:16822629-16822648 None:intergenic 35.0%
TACTATCACTAAAGCCAACA+AGG + chr1_3:16822778-16822797 Msa0106940:CDS 35.0%
ACTATCACTAAAGCCAACAA+GGG + chr1_3:16822779-16822798 Msa0106940:CDS 35.0%
GAAAAACCTTGCAACTTCTT+AGG - chr1_3:16822812-16822831 None:intergenic 35.0%
TGTCAGGGATCAAAGAAAAT+AGG - chr1_3:16822907-16822926 None:intergenic 35.0%
! ATTTTCTTTGATCCCTGACA+AGG + chr1_3:16822907-16822926 Msa0106940:intron 35.0%
CCTTCTTTATAACCTTGTCA+GGG - chr1_3:16822922-16822941 None:intergenic 35.0%
CCTGACAAGGTTATAAAGAA+GGG + chr1_3:16822920-16822939 Msa0106940:intron 35.0%
TATAAAGAAGGGATCTCTTC+TGG + chr1_3:16822931-16822950 Msa0106940:CDS 35.0%
! GTGATCGTGATATTCTAAAG+AGG + chr1_3:16822953-16822972 Msa0106940:CDS 35.0%
!! GAAAAGCATGCATTTTTGGA+AGG - chr1_3:16823005-16823024 None:intergenic 35.0%
! TCCAAAAATGCATGCTTTTC+AGG + chr1_3:16823005-16823024 Msa0106940:CDS 35.0%
! CCAAAAATGCATGCTTTTCA+GGG + chr1_3:16823006-16823025 Msa0106940:CDS 35.0%
! GTGATCGTGATATTCTAAAG+TGG + chr1_3:16822953-16822972 Msa0106940:CDS 35.0%
CCTTCTTTATAACCTTGTCA+TGG - chr1_3:16822922-16822941 None:intergenic 35.0%
CCATGACAAGGTTATAAAGA+AGG + chr1_3:16823110-16823129 Msa0106940:intron 35.0%
! GTGATCGTGATATTCTAAAG+AGG + chr1_3:16822953-16822972 Msa0106940:CDS 35.0%
! ATTCTAAAGAGGAAAGACGA+TGG + chr1_3:16823346-16823365 Msa0106940:CDS 35.0%
CCTTCTTTATAACCTTGTCA+TGG - chr1_3:16822922-16822941 None:intergenic 35.0%
CCATGACAAGGTTATAAAGA+AGG + chr1_3:16823110-16823129 Msa0106940:intron 35.0%
AAGACATTGGAGAAACTTGT+AGG + chr1_3:16823555-16823574 Msa0106940:CDS 35.0%
GAGATCCTTTCTTTATAACC+TGG - chr1_3:16824232-16824251 None:intergenic 35.0%
! CTTTGTAGATCATGCAGTTT+TGG - chr1_3:16824313-16824332 None:intergenic 35.0%
AGATTGTCAAACCAACCAAA+TGG - chr1_3:16824804-16824823 None:intergenic 35.0%
!! TTTGGTTGGTTTGACAATCT+TGG + chr1_3:16824804-16824823 Msa0106940:intron 35.0%
CCTCTTTCCATAAATCTCTT+TGG - chr1_3:16825103-16825122 None:intergenic 35.0%
CCAAAGAGATTTATGGAAAG+AGG + chr1_3:16825100-16825119 Msa0106940:CDS 35.0%
AGGATGTCGTGAAAAATTTG+TGG + chr1_3:16825120-16825139 Msa0106940:CDS 35.0%
ATTTGTGGAGTTGAAAATGG+GGG + chr1_3:16825135-16825154 Msa0106940:CDS 35.0%
AAAGAAGGAGTTGAAGTGAG+TGG + chr1_3:16814931-16814950 Msa0106940:CDS 40.0%
! TTTCTTACATTTGAGACCGG+AGG + chr1_3:16815298-16815317 Msa0106940:intron 40.0%
! TTCTTACATTTGAGACCGGA+GGG + chr1_3:16815299-16815318 Msa0106940:intron 40.0%
ATAAGCTGCATAAAGTGGGA+AGG + chr1_3:16815471-16815490 Msa0106940:intron 40.0%
! CTTGATCAAAATTGGTCTGG+AGG - chr1_3:16815658-16815677 None:intergenic 40.0%
TGATTGGGTCAATGCATACT+TGG - chr1_3:16815816-16815835 None:intergenic 40.0%
TGACCCAATCAAAATTGGTC+TGG + chr1_3:16815825-16815844 Msa0106940:intron 40.0%
!!! CCTCCAGACCAATTTTGATT+GGG - chr1_3:16815831-16815850 None:intergenic 40.0%
! CCAATCAAAATTGGTCTGGA+GGG + chr1_3:16815829-16815848 Msa0106940:intron 40.0%
! TGGAGGGTCAAAAGTGTAAA+AGG + chr1_3:16815845-16815864 Msa0106940:intron 40.0%
! GGAGGGTCAAAAGTGTAAAA+GGG + chr1_3:16815846-16815865 Msa0106940:intron 40.0%
! GAGGGTCAAAAGTGTAAAAG+GGG + chr1_3:16815847-16815866 Msa0106940:intron 40.0%
! AGGGTCAAAAGTGTAAAAGG+GGG + chr1_3:16815848-16815867 Msa0106940:intron 40.0%
TGAGTATATTCCTTTGCAGG+TGG + chr1_3:16815892-16815911 Msa0106940:intron 40.0%
GAGTATATTCCTTTGCAGGT+GGG + chr1_3:16815893-16815912 Msa0106940:intron 40.0%
AGTATATTCCTTTGCAGGTG+GGG + chr1_3:16815894-16815913 Msa0106940:intron 40.0%
!!! AGAAGATCTGTTTTGACCAC+TGG + chr1_3:16816289-16816308 Msa0106940:CDS 40.0%
GTTAAATGACTTCCAACCAG+TGG - chr1_3:16816308-16816327 None:intergenic 40.0%
TGGATTATCACCACAAGAAG+AGG - chr1_3:16816581-16816600 None:intergenic 40.0%
TTACCAACATATTGCTGCCA+TGG - chr1_3:16817455-16817474 None:intergenic 40.0%
AGAAGATCTCTTGTGACTAC+TGG + chr1_3:16817705-16817724 Msa0106940:CDS 40.0%
CCGTTACTATTACTCCATCA+AGG + chr1_3:16817814-16817833 Msa0106940:CDS 40.0%
! TTCAAAGTTCTAGCTAGGGT+AGG + chr1_3:16818304-16818323 Msa0106940:intron 40.0%
! TCAAAGTTCTAGCTAGGGTA+GGG + chr1_3:16818305-16818324 Msa0106940:intron 40.0%
TGTGTTTCTCCAGATTCAGA+AGG + chr1_3:16818505-16818524 Msa0106940:intron 40.0%
ACATTACCACCTTCTGAATC+TGG - chr1_3:16818517-16818536 None:intergenic 40.0%
AGGAAGTCATGAAAACTCTC+TGG + chr1_3:16818705-16818724 Msa0106940:CDS 40.0%
!! CTCTCTGGAATTGAAAATGG+GGG + chr1_3:16818720-16818739 Msa0106940:CDS 40.0%
!! TCTCTGGAATTGAAAATGGG+GGG + chr1_3:16818721-16818740 Msa0106940:CDS 40.0%
CATGGTTATAGGTTCTCTGA+AGG + chr1_3:16818784-16818803 Msa0106940:CDS 40.0%
! GTTATAGGTTCTCTGAAGGT+TGG + chr1_3:16818788-16818807 Msa0106940:CDS 40.0%
CAATAGAACAAGCAGCTAAG+GGG - chr1_3:16818918-16818937 None:intergenic 40.0%
TGATAAGTTCCTCTCCAGTT+TGG + chr1_3:16819177-16819196 Msa0106940:intron 40.0%
! CTTTTACAAACCCAACAGTG+TGG - chr1_3:16819281-16819300 None:intergenic 40.0%
!!! CGGTTATTTTAACGGGAATG+AGG - chr1_3:16819344-16819363 None:intergenic 40.0%
GAACTTGAGTTAACTTACGC+AGG + chr1_3:16819363-16819382 Msa0106940:intron 40.0%
CTCAGTTAGTTAAATCGCAC+AGG + chr1_3:16819392-16819411 Msa0106940:intron 40.0%
!!! CCATCTGTTTTTGCTCATTC+CGG - chr1_3:16819431-16819450 None:intergenic 40.0%
CGGAATGAGCAAAAACAGAT+GGG + chr1_3:16819429-16819448 Msa0106940:intron 40.0%
CAAGAGGTTAGGGAATAATG+TGG - chr1_3:16819698-16819717 None:intergenic 40.0%
GAGTGAGATATCAAGAGGTT+AGG - chr1_3:16819709-16819728 None:intergenic 40.0%
TAACCGAGTGAGATATCAAG+AGG - chr1_3:16819714-16819733 None:intergenic 40.0%
CCAACTGAGTTAAACTCAAG+AGG - chr1_3:16820080-16820099 None:intergenic 40.0%
CCTCTTGAGTTTAACTCAGT+TGG + chr1_3:16820077-16820096 Msa0106940:intron 40.0%
AAACTCTCACTCACCATTAG+TGG + chr1_3:16820252-16820271 Msa0106940:intron 40.0%
GAAGTGGGAACCAATTGTAA+TGG - chr1_3:16820822-16820841 None:intergenic 40.0%
!! TGGCCGGTGTTTATTTTCAT+TGG - chr1_3:16820858-16820877 None:intergenic 40.0%
GTGAAGTGTGAAGTGAAACT+CGG - chr1_3:16820967-16820986 None:intergenic 40.0%
AGTTTCACTTCACACTTCAC+AGG + chr1_3:16820967-16820986 Msa0106940:intron 40.0%
GAGGATTCCCAAGAAATATG+TGG + chr1_3:16821198-16821217 Msa0106940:intron 40.0%
AGGTAGGAACATTGAAGACA+CGG + chr1_3:16822067-16822086 Msa0106940:intron 40.0%
!!! GGACATGTATTTTGAAACGG+AGG - chr1_3:16822255-16822274 None:intergenic 40.0%
CATATGTGAAGTGGTTGACT+TGG - chr1_3:16822276-16822295 None:intergenic 40.0%
!!! GGTCATGTATTTTGAAACGG+AGG + chr1_3:16822482-16822501 Msa0106940:intron 40.0%
CCCTGACAAGGTTATAAAGA+AGG + chr1_3:16822919-16822938 Msa0106940:intron 40.0%
CCCTTCTTTATAACCTTGTC+AGG - chr1_3:16822923-16822942 None:intergenic 40.0%
! ATTCTAAAGAGGAGAGACAC+TGG + chr1_3:16822964-16822983 Msa0106940:CDS 40.0%
!! CCCTGAAAAGCATGCATTTT+TGG - chr1_3:16823009-16823028 None:intergenic 40.0%
AAGACACTCGAGAAACTTGT+AGG + chr1_3:16823168-16823187 Msa0106940:CDS 40.0%
!! AAGAGCATGCACTTTTGGAA+GGG - chr1_3:16823195-16823214 None:intergenic 40.0%
AAGACGATGGAGAAACTTGT+AGG + chr1_3:16823359-16823378 Msa0106940:CDS 40.0%
!! AAGAGCTTGCACTTTTGGAA+GGG - chr1_3:16823386-16823405 None:intergenic 40.0%
AATTTCTTTGATCCATGCCC+AGG + chr1_3:16824211-16824230 Msa0106940:intron 40.0%
CTTTCTTTATAACCTGGGCA+TGG - chr1_3:16824226-16824245 None:intergenic 40.0%
CATGCCCAGGTTATAAAGAA+AGG + chr1_3:16824224-16824243 Msa0106940:intron 40.0%
!!! GTAGATCATGCAGTTTTGGA+CGG - chr1_3:16824309-16824328 None:intergenic 40.0%
TTTGGTGAATTCCAAACACC+CGG + chr1_3:16824970-16824989 Msa0106940:intron 40.0%
GCATGCACCAAAGAGATTTA+TGG + chr1_3:16825093-16825112 Msa0106940:intron 40.0%
TTTGTGGAGTTGAAAATGGG+GGG + chr1_3:16825136-16825155 Msa0106940:CDS 40.0%
AACTGACAACCACGAATACT+AGG - chr1_3:16825193-16825212 None:intergenic 40.0%
GTTGTCAGTTCAGTAAAGGT+TGG + chr1_3:16825203-16825222 Msa0106940:CDS 40.0%
GAAATACTTGTCTCCTAGAG+CGG + chr1_3:16825260-16825279 Msa0106940:CDS 40.0%
! TTTTCTCATCAATCCGCTCT+AGG - chr1_3:16825276-16825295 None:intergenic 40.0%
! GAGGATTCCCAAGAAGTATG+TGG + chr1_3:16814636-16814655 Msa0106940:intron 45.0%
AAATACCCACCCAAGCTCAA+AGG + chr1_3:16814983-16815002 Msa0106940:CDS 45.0%
ACTACCCAGCCAAAATTCTC+AGG + chr1_3:16815048-16815067 Msa0106940:CDS 45.0%
!!! CTCACCTGAGAATTTTGGCT+GGG - chr1_3:16815055-16815074 None:intergenic 45.0%
!! ACTCACCTGAGAATTTTGGC+TGG - chr1_3:16815056-16815075 None:intergenic 45.0%
CACCAACGTCACTTAAAGTG+AGG + chr1_3:16815693-16815712 Msa0106940:intron 45.0%
CACCTCACTTTAAGTGACGT+TGG - chr1_3:16815698-16815717 None:intergenic 45.0%
! CCCAATCAAAATTGGTCTGG+AGG + chr1_3:16815828-16815847 Msa0106940:intron 45.0%
!! CCCTCCAGACCAATTTTGAT+TGG - chr1_3:16815832-16815851 None:intergenic 45.0%
! CAGAGGAGGCATGATTAAGA+AGG + chr1_3:16815918-16815937 Msa0106940:intron 45.0%
ACTTACCATCCTGCATCCAT+GGG - chr1_3:16816031-16816050 None:intergenic 45.0%
!! AGTTGGTGAGGACAAGACTA+TGG + chr1_3:16816237-16816256 Msa0106940:CDS 45.0%
!!! GATCTGTTTTGACCACTGGT+TGG + chr1_3:16816293-16816312 Msa0106940:CDS 45.0%
GAGGTCCCTTCTTTATAACC+TGG - chr1_3:16816562-16816581 None:intergenic 45.0%
AAAGAAGGGACCTCTTCTTG+TGG + chr1_3:16816568-16816587 Msa0106940:CDS 45.0%
AACCAAAAGGGTGGTAGCAA+AGG + chr1_3:16816883-16816902 Msa0106940:intron 45.0%
TAGAAACTGAAGGAGGGGAA+AGG + chr1_3:16816938-16816957 Msa0106940:intron 45.0%
! CAGTGGAGGCATGATTAAGA+AGG + chr1_3:16817341-16817360 Msa0106940:CDS 45.0%
!! AGTTGGTGAGGACAAGACTA+TGG + chr1_3:16816237-16816256 Msa0106940:CDS 45.0%
GATCTCTTGTGACTACTGGT+TGG + chr1_3:16817709-16817728 Msa0106940:CDS 45.0%
GTTTCTCCAGATTCAGAAGG+TGG + chr1_3:16818508-16818527 Msa0106940:intron 45.0%
TTGGTCCTTAACCACACTGT+TGG + chr1_3:16819267-16819286 Msa0106940:intron 45.0%
TGGTCCTTAACCACACTGTT+GGG + chr1_3:16819268-16819287 Msa0106940:intron 45.0%
CAAACCCAACAGTGTGGTTA+AGG - chr1_3:16819275-16819294 None:intergenic 45.0%
CCGGAATGAGCAAAAACAGA+TGG + chr1_3:16819428-16819447 Msa0106940:intron 45.0%
ACCCTACACCGTGTTTCAAA+GGG + chr1_3:16819498-16819517 Msa0106940:intron 45.0%
GATGCTAGTTGCGAGACAAT+GGG - chr1_3:16819783-16819802 None:intergenic 45.0%
TGATGCTAGTTGCGAGACAA+TGG - chr1_3:16819784-16819803 None:intergenic 45.0%
TCACTCACCATTAGTGGCAT+GGG + chr1_3:16820258-16820277 Msa0106940:intron 45.0%
TCTCTTGTAAATAGGACCGG+AGG + chr1_3:16820634-16820653 Msa0106940:intron 45.0%
CTCTTGTAAATAGGACCGGA+GGG + chr1_3:16820635-16820654 Msa0106940:intron 45.0%
! ATGTTGGGGGTGTGTATGTT+CGG - chr1_3:16820750-16820769 None:intergenic 45.0%
GTTCCCACTTCCCAATAGTA+AGG + chr1_3:16820831-16820850 Msa0106940:intron 45.0%
GGTCCTTACTATTGGGAAGT+GGG - chr1_3:16820837-16820856 None:intergenic 45.0%
TGGTCCTTACTATTGGGAAG+TGG - chr1_3:16820838-16820857 None:intergenic 45.0%
ATGACACAAACTTACGCCCA+TGG + chr1_3:16822170-16822189 Msa0106940:intron 45.0%
TTACGCCCATGGTCATATCT+TGG + chr1_3:16822181-16822200 Msa0106940:intron 45.0%
! GTGCATTGGCATATGTGAAG+TGG - chr1_3:16822285-16822304 None:intergenic 45.0%
GGGATTGCAAGCTTAAGAGT+TGG + chr1_3:16822596-16822615 Msa0106940:intron 45.0%
TGCAAGCTTAAGAGTTGGAG+AGG + chr1_3:16822601-16822620 Msa0106940:CDS 45.0%
CCTTGCAACTTCTTAGGGTT+TGG - chr1_3:16822806-16822825 None:intergenic 45.0%
CCAAACCCTAAGAAGTTGCA+AGG + chr1_3:16822803-16822822 Msa0106940:CDS 45.0%
GAGACACTGGAGAAACTTGT+AGG + chr1_3:16822977-16822996 Msa0106940:CDS 45.0%
!! GAAGAGCATGCACTTTTGGA+AGG - chr1_3:16823196-16823215 None:intergenic 45.0%
! TCCAAAAGTGCATGCTCTTC+AGG + chr1_3:16823196-16823215 Msa0106940:CDS 45.0%
! CCAAAAGTGCATGCTCTTCA+GGG + chr1_3:16823197-16823216 Msa0106940:CDS 45.0%
! GAAGAGCTTGCACTTTTGGA+AGG - chr1_3:16823387-16823406 None:intergenic 45.0%
! TCCAAAAGTGCAAGCTCTTC+AGG + chr1_3:16823387-16823406 Msa0106940:CDS 45.0%
! CCAAAAGTGCAAGCTCTTCA+GGG + chr1_3:16823388-16823407 Msa0106940:CDS 45.0%
!! GGAAGCATGCTCTTTTGGAA+GGG - chr1_3:16823582-16823601 None:intergenic 45.0%
TGAATTCCAAACACCCGGTA+GGG + chr1_3:16824975-16824994 Msa0106940:intron 45.0%
AATTTACCCTACCGGGTGTT+TGG - chr1_3:16824984-16825003 None:intergenic 45.0%
TGAAAATGGGGGGACAATCA+TGG + chr1_3:16825146-16825165 Msa0106940:CDS 45.0%
CGTGGTTGTCAGTTCAGTAA+AGG + chr1_3:16825199-16825218 Msa0106940:CDS 45.0%
!!! AAACTTTTATTTTTTTAATT+TGG + chr1_3:16816678-16816697 Msa0106940:intron 5.0%
!!! TATCATTTTATATTTATTTT+GGG - chr1_3:16816920-16816939 None:intergenic 5.0%
!!! ATATGATTTAATTTTTTTTA+GGG + chr1_3:16817002-16817021 Msa0106940:intron 5.0%
!! ATATAAATTTATTTAAGAAA+AGG - chr1_3:16818446-16818465 None:intergenic 5.0%
!!! CTTTTAATTTTTAAATATAT+TGG + chr1_3:16821367-16821386 Msa0106940:intron 5.0%
!! TATAAATTAATAAAAAAGTA+TGG + chr1_3:16822420-16822439 Msa0106940:intron 5.0%
!! TTAAATAAATAAAGAAATTA+AGG - chr1_3:16823255-16823274 None:intergenic 5.0%
!!! CTATTTAAAATTAATATTTA+AGG - chr1_3:16823824-16823843 None:intergenic 5.0%
!!! TATTAATTTTTTTTTTAAGA+CGG - chr1_3:16824883-16824902 None:intergenic 5.0%
CTTGTCCTTTGAGCTTGGGT+GGG - chr1_3:16814991-16815010 None:intergenic 50.0%
TCTTGTCCTTTGAGCTTGGG+TGG - chr1_3:16814992-16815011 None:intergenic 50.0%
TTGCCACAATCTTACGCCCA+TGG + chr1_3:16816012-16816031 Msa0106940:CDS 50.0%
CATCCATGGGCGTAAGATTG+TGG - chr1_3:16816018-16816037 None:intergenic 50.0%
AATCTTACGCCCATGGATGC+AGG + chr1_3:16816019-16816038 Msa0106940:CDS 50.0%
GACTTACCATCCTGCATCCA+TGG - chr1_3:16816032-16816051 None:intergenic 50.0%
GAGCTTGATTGCTCCCTTGA+TGG - chr1_3:16816415-16816434 None:intergenic 50.0%
! CACCTTTGCTACCACCCTTT+TGG - chr1_3:16816888-16816907 None:intergenic 50.0%
TACTTTGCAGGTAGGGACAG+TGG + chr1_3:16817324-16817343 Msa0106940:intron 50.0%
CGTCCATGGCAGCAATATGT+TGG + chr1_3:16817449-16817468 Msa0106940:CDS 50.0%
AAGCTTGGTTGCTCCCTTGA+TGG - chr1_3:16817831-16817850 None:intergenic 50.0%
GAGGTCCCTTCCTTATAACC+TGG - chr1_3:16817986-16818005 None:intergenic 50.0%
AAGGAAGGGACCTCTTCTTG+TGG + chr1_3:16817992-16818011 Msa0106940:intron 50.0%
TGAAAATGGGGGGACGATCA+TGG + chr1_3:16818731-16818750 Msa0106940:CDS 50.0%
CACCCTACACCGTGTTTCAA+AGG + chr1_3:16819497-16819516 Msa0106940:intron 50.0%
!! CCCCTTTGAAACACGGTGTA+GGG - chr1_3:16819502-16819521 None:intergenic 50.0%
CCCTACACCGTGTTTCAAAG+GGG + chr1_3:16819499-16819518 Msa0106940:intron 50.0%
!! TCCCCTTTGAAACACGGTGT+AGG - chr1_3:16819503-16819522 None:intergenic 50.0%
! TAGTTGCGAGACAATGGGCT+AGG - chr1_3:16819778-16819797 None:intergenic 50.0%
CTCACTCACCATTAGTGGCA+TGG + chr1_3:16820257-16820276 Msa0106940:intron 50.0%
CACTCACCATTAGTGGCATG+GGG + chr1_3:16820259-16820278 Msa0106940:intron 50.0%
AGAGGACCCTGCTATGAAAG+TGG + chr1_3:16822619-16822638 Msa0106940:CDS 50.0%
! CTTAGGGTTTGGTCCCTTGT+TGG - chr1_3:16822795-16822814 None:intergenic 50.0%
!! CCCTGAAGAGCATGCACTTT+TGG - chr1_3:16823200-16823219 None:intergenic 50.0%
! CCCTGAAGAGCTTGCACTTT+TGG - chr1_3:16823391-16823410 None:intergenic 50.0%
!! GGGAAGCATGCTCTTTTGGA+AGG - chr1_3:16823583-16823602 None:intergenic 50.0%
!! CCATGGGAAGCATGCTCTTT+TGG - chr1_3:16823587-16823606 None:intergenic 50.0%
! CCAAAAGAGCATGCTTCCCA+TGG + chr1_3:16823584-16823603 Msa0106940:CDS 50.0%
GTGAATTCCAAACACCCGGT+AGG + chr1_3:16824974-16824993 Msa0106940:intron 50.0%
TTACGCCCATGGATGCAGGA+TGG + chr1_3:16816023-16816042 Msa0106940:CDS 55.0%
TTTGCAGGTAGGGACAGTGG+AGG + chr1_3:16817327-16817346 Msa0106940:intron 55.0%
ACACGGTGTAGGGTGATGTG+AGG - chr1_3:16819492-16819511 None:intergenic 55.0%
CTCTTGCCCCATGCCACTAA+TGG - chr1_3:16820268-16820287 None:intergenic 55.0%
TCCTTTGCAGGTGGGGACAG+AGG + chr1_3:16815901-16815920 Msa0106940:intron 60.0%
TCCTCTGTCCCCACCTGCAA+AGG - chr1_3:16815905-16815924 None:intergenic 60.0%
TTTGCAGGTGGGGACAGAGG+AGG + chr1_3:16815904-16815923 Msa0106940:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 16814467 16825327 16814467 ID=Msa0106940;Name=Msa0106940
chr1_3 mRNA 16814467 16825327 16814467 ID=Msa0106940-mRNA-1;Parent=Msa0106940;Name=Msa0106940-mRNA-1;_AED=0.18;_eAED=0.20;_QI=0|0.23|0.16|1|0.58|0.55|18|0|905
chr1_3 exon 16814467 16814523 16814467 ID=Msa0106940-mRNA-1:exon:6328;Parent=Msa0106940-mRNA-1
chr1_3 exon 16814637 16814799 16814637 ID=Msa0106940-mRNA-1:exon:6329;Parent=Msa0106940-mRNA-1
chr1_3 exon 16814827 16815069 16814827 ID=Msa0106940-mRNA-1:exon:6330;Parent=Msa0106940-mRNA-1
chr1_3 exon 16815959 16816044 16815959 ID=Msa0106940-mRNA-1:exon:6331;Parent=Msa0106940-mRNA-1
chr1_3 exon 16816175 16816454 16816175 ID=Msa0106940-mRNA-1:exon:6332;Parent=Msa0106940-mRNA-1
chr1_3 exon 16816563 16816658 16816563 ID=Msa0106940-mRNA-1:exon:6333;Parent=Msa0106940-mRNA-1
chr1_3 exon 16817334 16817470 16817334 ID=Msa0106940-mRNA-1:exon:6334;Parent=Msa0106940-mRNA-1
chr1_3 exon 16817591 16817870 16817591 ID=Msa0106940-mRNA-1:exon:6335;Parent=Msa0106940-mRNA-1
chr1_3 exon 16818524 16818582 16818524 ID=Msa0106940-mRNA-1:exon:6336;Parent=Msa0106940-mRNA-1
chr1_3 exon 16818679 16818885 16818679 ID=Msa0106940-mRNA-1:exon:6337;Parent=Msa0106940-mRNA-1
chr1_3 exon 16821199 16821294 16821199 ID=Msa0106940-mRNA-1:exon:6338;Parent=Msa0106940-mRNA-1
chr1_3 exon 16821406 16821607 16821406 ID=Msa0106940-mRNA-1:exon:6339;Parent=Msa0106940-mRNA-1
chr1_3 exon 16822597 16822824 16822597 ID=Msa0106940-mRNA-1:exon:6340;Parent=Msa0106940-mRNA-1
chr1_3 exon 16822929 16823027 16822929 ID=Msa0106940-mRNA-1:exon:6341;Parent=Msa0106940-mRNA-1
chr1_3 exon 16823120 16823218 16823120 ID=Msa0106940-mRNA-1:exon:6342;Parent=Msa0106940-mRNA-1
chr1_3 exon 16823311 16823409 16823311 ID=Msa0106940-mRNA-1:exon:6343;Parent=Msa0106940-mRNA-1
chr1_3 exon 16823553 16823605 16823553 ID=Msa0106940-mRNA-1:exon:6344;Parent=Msa0106940-mRNA-1
chr1_3 exon 16825094 16825327 16825094 ID=Msa0106940-mRNA-1:exon:6345;Parent=Msa0106940-mRNA-1
chr1_3 CDS 16814467 16814523 16814467 ID=Msa0106940-mRNA-1:cds;Parent=Msa0106940-mRNA-1
chr1_3 CDS 16814637 16814799 16814637 ID=Msa0106940-mRNA-1:cds;Parent=Msa0106940-mRNA-1
chr1_3 CDS 16814827 16815069 16814827 ID=Msa0106940-mRNA-1:cds;Parent=Msa0106940-mRNA-1
chr1_3 CDS 16815959 16816044 16815959 ID=Msa0106940-mRNA-1:cds;Parent=Msa0106940-mRNA-1
chr1_3 CDS 16816175 16816454 16816175 ID=Msa0106940-mRNA-1:cds;Parent=Msa0106940-mRNA-1
chr1_3 CDS 16816563 16816658 16816563 ID=Msa0106940-mRNA-1:cds;Parent=Msa0106940-mRNA-1
chr1_3 CDS 16817334 16817470 16817334 ID=Msa0106940-mRNA-1:cds;Parent=Msa0106940-mRNA-1
chr1_3 CDS 16817591 16817870 16817591 ID=Msa0106940-mRNA-1:cds;Parent=Msa0106940-mRNA-1
chr1_3 CDS 16818524 16818582 16818524 ID=Msa0106940-mRNA-1:cds;Parent=Msa0106940-mRNA-1
chr1_3 CDS 16818679 16818885 16818679 ID=Msa0106940-mRNA-1:cds;Parent=Msa0106940-mRNA-1
chr1_3 CDS 16821199 16821294 16821199 ID=Msa0106940-mRNA-1:cds;Parent=Msa0106940-mRNA-1
chr1_3 CDS 16821406 16821607 16821406 ID=Msa0106940-mRNA-1:cds;Parent=Msa0106940-mRNA-1
chr1_3 CDS 16822597 16822824 16822597 ID=Msa0106940-mRNA-1:cds;Parent=Msa0106940-mRNA-1
chr1_3 CDS 16822929 16823027 16822929 ID=Msa0106940-mRNA-1:cds;Parent=Msa0106940-mRNA-1
chr1_3 CDS 16823120 16823218 16823120 ID=Msa0106940-mRNA-1:cds;Parent=Msa0106940-mRNA-1
chr1_3 CDS 16823311 16823409 16823311 ID=Msa0106940-mRNA-1:cds;Parent=Msa0106940-mRNA-1
chr1_3 CDS 16823553 16823605 16823553 ID=Msa0106940-mRNA-1:cds;Parent=Msa0106940-mRNA-1
chr1_3 CDS 16825094 16825327 16825094 ID=Msa0106940-mRNA-1:cds;Parent=Msa0106940-mRNA-1
Gene Sequence

>Msa0106940

ATGTCATTTCAAAATATCCCCGATTTTCATAGGATAATATTGCAAGATAAGAAGCTTAGGATTCCCAAGAAGTATGTGGAGAACTTTTGGAAAGGAATATCAAACCCAATATTCCTTAAATTCCCAAATGGTGTTCAACAAAAAATATTTTGGGTGGAGAGTAATGGAGATATTTGGTTTCAAAAAAATTGGGAAAGTTTTGCAAAGTTTCTGAAATATGGTGGATCATATTTCAAGGTTCAGATATTTGGTGCAAATACTTTAGAAATAAATTATTCCAACATAAAATCCATTGATGAAGTTGTTGAAGCTACAGAAAAAGCTAAAGAAGGAGTTGAAGTGAGTGGTGATAGTGATAAGAGTTTAGATGAAAGTGAAATACCCACCCAAGCTCAAAGGACAAGAAAAAATGGCAAGAGAAAAAATAGTGTGGATTTGGATACTACCCAGCCAAAATTCTCAGTTGAAGTTGTTAATGAAAGTGGCAATAATGAGAATCCCTTTTTTGATGTTACATTGCCACAATCTTACGCCCATGGATGCAGGATGGTGGTACCAAGTGATTTTTCAAGAGCACACTTGAACAAATTTAAAGGGATTGCAAATTTAATAGTTGGTGAGGACAAGACTATGGAAGTGAATGTGAACTTTGAAGATAATAATAGAAGATCTGTTTTGACCACTGGTTGGAAGTCATTTAACCAAAAATATAACTTACAAGTTGGTGATAAATGTAAATTTGTGATGACTCAAAGAGATCCACTTTCATTTCTTGTTACTATTACTCCATCAAGGGAGCAATCAAGCTCAAAGAAATTAAAATCGCAAGGTTATAAAGAAGGGACCTCTTCTTGTGGTGATAATCCAAAGAGAAAAGGATTTGAAGGAACTTCTAGGAGCTGCCCAACAAATCATCGTCTTGAAAGTAGGGACAGTGGAGGCATGATTAAGAAGGCTAAAAATTGCTCACCAGTTGAAGTTGTTAATGAGAGTGACAATAATGAGAATCCTTTTTTTTATGTTACATTGTCAAAATCTTACGTCCATGGCAGCAATATGTTGGTGATACCAAGTAATTTTTCAAGAGCACACTTGAACAAATTTAAAGGGATTGCAAATTTAAGAGTTGGTGAGGACAAGACTATGGAAGTGAATGTGACGTTTGAAGATAAGCATAGAAGATCTCTTGTGACTACTGGTTGGAAATCATTTAACCAAAAATATAACTTACAAGTTGGTGATATATGTAAATTTGTGATGACTCAAAGAGAACCACTTTCATTCACCGTTACTATTACTCCATCAAGGGAGCAACCAAGCTTAAAGAAATTAATATCGCAAGAAGGTGGTAATGTGAAGAAACCTAAAACATTCAAGATTGATGTGTATTCAAAATACCCGAATGTTCCAAAGGAGTTTATGAAAAGAGGAAGTCATGAAAACTCTCTGGAATTGAAAATGGGGGGACGATCATGGTTTGTAAAAGTGAATTATTACGATAGTATTCATGGTTATAGGTTCTCTGAAGGTTGGAGACAATTCATAAAAGAATGCAAAGTGGAGATTGGAGATACTCTTCTCTTTAAGTTGATTGATGAGAGCAAGTTTAGGATTCCCAAGAAATATGTGGAGAAATTTTGGAAAGGAATATCAAACCCAATATTCCTTAACTTACCAAATGGTGTTCAACAAAAAATATTTTGGGTTAAGATATTTGGTGTCAATGCTTTAGAAATAGATTATTCCAATATAAAATCTGTTGATGAAGTTGTTGAAGCTACAAAAGAAGCTAAAGAAATTGTTGATTTGACTGATGAGAATGAAATACCAATGGAAGCTCAAATGATAACAAATGGGAAGAGAAAAATGAGTATAGATATTGACACTCTTAAGCAAAAATTCCCAGGGATTGCAAGCTTAAGAGTTGGAGAGGACCCTGCTATGAAAGTGGATATAGTGTTTAACAATAAAAGATCTTCTAATTCTATGACTATTGGTTGGAAGTCATTTAACCAAAAATATAACTTAAAAGTTGGTGATATATGTAAATTTGTGATGACTCAAAGAGAACCACTTTTATTCACTATTACTATCACTAAAGCCAACAAGGGACCAAACCCTAAGAAGTTGCAAGGTTATAAAGAAGGGATCTCTTCTGGTGATCGTGATATTCTAAAGAGGAGAGACACTGGAGAAACTTGTAGGAGCCTTCCAAAAATGCATGCTTTTCAGGGTTATAAAGAAGATATCTCTTCTTGTGATCGTGATATTCTAAAGTGGAAAGACACTCGAGAAACTTGTAGGACCCTTCCAAAAGTGCATGCTCTTCAGGGTTATAAAGAAGGGATCTCTTATGGTGATCGTGATATTCTAAAGAGGAAAGACGATGGAGAAACTTGTAGGACCCTTCCAAAAGTGCAAGCTCTTCAGGGAAAGACATTGGAGAAACTTGTAGGACCCTTCCAAAAGAGCATGCTTCCCATGCATGCACCAAAGAGATTTATGGAAAGAGGATGTCGTGAAAAATTTGTGGAGTTGAAAATGGGGGGACAATCATGGTTCGTAAAAGTGATTTATTATCCTAGTATTCGTGGTTGTCAGTTCAGTAAAGGTTGGATAAAATTTATGAAAGAATGTAAAGTGAAAATTGGAAATACTTGTCTCCTAGAGCGGATTGATGAGAAAAATTATGTGTTTAAAGTTTCCATTGTGGGATAG
Protein sequence

>Msa0106940

MSFQNIPDFHRIILQDKKLRIPKKYVENFWKGISNPIFLKFPNGVQQKIFWVESNGDIWFQKNWESFAKFLKYGGSYFKVQIFGANTLEINYSNIKSIDEVVEATEKAKEGVEVSGDSDKSLDESEIPTQAQRTRKNGKRKNSVDLDTTQPKFSVEVVNESGNNENPFFDVTLPQSYAHGCRMVVPSDFSRAHLNKFKGIANLIVGEDKTMEVNVNFEDNNRRSVLTTGWKSFNQKYNLQVGDKCKFVMTQRDPLSFLVTITPSREQSSSKKLKSQGYKEGTSSCGDNPKRKGFEGTSRSCPTNHRLESRDSGGMIKKAKNCSPVEVVNESDNNENPFFYVTLSKSYVHGSNMLVIPSNFSRAHLNKFKGIANLRVGEDKTMEVNVTFEDKHRRSLVTTGWKSFNQKYNLQVGDICKFVMTQREPLSFTVTITPSREQPSLKKLISQEGGNVKKPKTFKIDVYSKYPNVPKEFMKRGSHENSLELKMGGRSWFVKVNYYDSIHGYRFSEGWRQFIKECKVEIGDTLLFKLIDESKFRIPKKYVEKFWKGISNPIFLNLPNGVQQKIFWVKIFGVNALEIDYSNIKSVDEVVEATKEAKEIVDLTDENEIPMEAQMITNGKRKMSIDIDTLKQKFPGIASLRVGEDPAMKVDIVFNNKRSSNSMTIGWKSFNQKYNLKVGDICKFVMTQREPLLFTITITKANKGPNPKKLQGYKEGISSGDRDILKRRDTGETCRSLPKMHAFQGYKEDISSCDRDILKWKDTRETCRTLPKVHALQGYKEGISYGDRDILKRKDDGETCRTLPKVQALQGKTLEKLVGPFQKSMLPMHAPKRFMERGCREKFVELKMGGQSWFVKVIYYPSIRGCQFSKGWIKFMKECKVKIGNTCLLERIDEKNYVFKVSIVG*