Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106990 | KEH40807.1 | 86.331 | 417 | 43 | 3 | 1 | 406 | 1 | 414 | 0.0 | 733 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106990 | A0A072VG97 | 86.331 | 417 | 43 | 3 | 1 | 406 | 1 | 414 | 0.0 | 733 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0106990 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0106990 | MtrunA17_Chr1g0163231 | 83.793 | 290 | 35 | 2 | 1 | 279 | 1 | 289 | 3.89e-178 | 498 |
| Msa0106990 | MtrunA17_Chr1g0171611 | 79.252 | 294 | 33 | 3 | 1 | 279 | 1 | 281 | 3.32e-159 | 449 |
| Msa0106990 | MtrunA17_Chr1g0163181 | 41.761 | 443 | 200 | 11 | 1 | 400 | 1 | 428 | 4.31e-105 | 317 |
| Msa0106990 | MtrunA17_Chr1g0163201 | 43.873 | 408 | 164 | 11 | 24 | 400 | 18 | 391 | 3.79e-98 | 298 |
| Msa0106990 | MtrunA17_Chr1g0163261 | 51.525 | 295 | 109 | 8 | 1 | 271 | 1 | 285 | 3.08e-91 | 277 |
| Msa0106990 | MtrunA17_Chr1g0163251 | 45.092 | 326 | 140 | 10 | 1 | 296 | 1 | 317 | 4.32e-81 | 254 |
| Msa0106990 | MtrunA17_Chr1g0163111 | 42.231 | 251 | 121 | 8 | 150 | 400 | 1 | 227 | 1.52e-52 | 175 |
| Msa0106990 | MtrunA17_Chr1g0163151 | 40.239 | 251 | 119 | 6 | 150 | 400 | 1 | 220 | 4.18e-52 | 174 |
| Msa0106990 | MtrunA17_Chr1g0162151 | 40.385 | 260 | 104 | 10 | 150 | 406 | 1 | 212 | 9.25e-42 | 146 |
| Msa0106990 | MtrunA17_Chr6g0476171 | 33.708 | 267 | 143 | 5 | 143 | 400 | 3 | 244 | 1.13e-35 | 131 |
| Msa0106990 | MtrunA17_Chr1g0163241 | 51.562 | 128 | 46 | 4 | 24 | 136 | 22 | 148 | 2.75e-32 | 120 |
| Msa0106990 | MtrunA17_Chr1g0163191 | 47.967 | 123 | 49 | 2 | 1 | 112 | 1 | 119 | 7.94e-31 | 115 |
| Msa0106990 | MtrunA17_Chr7g0233561 | 29.373 | 303 | 166 | 10 | 6 | 267 | 15 | 310 | 8.98e-28 | 112 |
| Msa0106990 | MtrunA17_Chr1g0163091 | 48.800 | 125 | 57 | 4 | 150 | 271 | 1 | 121 | 1.35e-27 | 107 |
| Msa0106990 | MtrunA17_Chr3g0131891 | 27.946 | 297 | 168 | 10 | 6 | 267 | 16 | 301 | 8.32e-27 | 109 |
| Msa0106990 | MtrunA17_Chr8g0390841 | 21.730 | 497 | 269 | 15 | 9 | 402 | 39 | 518 | 4.76e-24 | 103 |
| Msa0106990 | MtrunA17_Chr1g0162161 | 39.456 | 147 | 57 | 5 | 25 | 145 | 4 | 144 | 7.67e-23 | 94.4 |
| Msa0106990 | MtrunA17_Chr1g0163131 | 40.260 | 154 | 81 | 5 | 256 | 400 | 154 | 305 | 1.72e-21 | 94.4 |
| Msa0106990 | MtrunA17_Chr1g0163131 | 26.599 | 297 | 181 | 8 | 5 | 268 | 14 | 306 | 9.37e-20 | 89.4 |
| Msa0106990 | MtrunA17_Chr1g0208771 | 23.291 | 468 | 249 | 16 | 24 | 402 | 12 | 458 | 1.07e-20 | 93.6 |
| Msa0106990 | MtrunA17_Chr1g0163101 | 35.838 | 173 | 78 | 7 | 2 | 145 | 3 | 171 | 3.36e-20 | 87.4 |
| Msa0106990 | MtrunA17_Chr4g0067431 | 25.649 | 308 | 168 | 11 | 9 | 267 | 15 | 310 | 1.44e-19 | 89.0 |
| Msa0106990 | MtrunA17_Chr7g0233531 | 28.000 | 275 | 151 | 10 | 25 | 267 | 2 | 261 | 2.68e-19 | 87.4 |
| Msa0106990 | MtrunA17_Chr7g0233521 | 26.715 | 277 | 152 | 11 | 25 | 267 | 2 | 261 | 3.26e-18 | 84.3 |
| Msa0106990 | MtrunA17_Chr1g0163221 | 26.045 | 311 | 188 | 10 | 9 | 285 | 11 | 313 | 6.22e-18 | 84.7 |
| Msa0106990 | MtrunA17_Chr7g0233541 | 26.335 | 281 | 165 | 9 | 25 | 267 | 2 | 278 | 1.24e-17 | 82.8 |
| Msa0106990 | MtrunA17_Chr1g0163121 | 34.286 | 140 | 67 | 5 | 23 | 145 | 9 | 140 | 9.60e-16 | 73.9 |
| Msa0106990 | MtrunA17_Chr5g0419201 | 31.579 | 171 | 99 | 4 | 3 | 155 | 10 | 180 | 2.44e-15 | 73.9 |
| Msa0106990 | MtrunA17_Chr1g0163141 | 31.288 | 163 | 71 | 5 | 23 | 145 | 9 | 170 | 3.42e-15 | 73.6 |
| Msa0106990 | MtrunA17_Chr6g0476181 | 35.065 | 154 | 66 | 7 | 25 | 145 | 2 | 154 | 9.08e-15 | 71.6 |
| Msa0106990 | MtrunA17_Chr6g0467351 | 34.932 | 146 | 77 | 4 | 9 | 140 | 15 | 156 | 9.51e-15 | 73.2 |
| Msa0106990 | MtrunA17_Chr3g0103181 | 21.951 | 287 | 182 | 10 | 6 | 267 | 9 | 278 | 1.13e-14 | 73.9 |
| Msa0106990 | MtrunA17_Chr7g0233571 | 27.485 | 171 | 113 | 4 | 6 | 165 | 7 | 177 | 1.67e-14 | 72.4 |
| Msa0106990 | MtrunA17_Chr3g0103171 | 22.711 | 273 | 169 | 9 | 24 | 267 | 5 | 264 | 1.40e-13 | 70.5 |
| Msa0106990 | MtrunA17_Chr1g0163081 | 39.326 | 89 | 42 | 2 | 25 | 102 | 6 | 93 | 1.70e-13 | 67.8 |
| Msa0106990 | MtrunA17_Chr3g0103191 | 23.786 | 206 | 135 | 4 | 6 | 191 | 9 | 212 | 2.67e-13 | 69.3 |
| Msa0106990 | MtrunA17_Chr3g0103151 | 27.778 | 144 | 82 | 4 | 6 | 135 | 9 | 144 | 6.13e-12 | 63.5 |
| Msa0106990 | MtrunA17_Chr1g0163061 | 37.647 | 85 | 50 | 2 | 9 | 90 | 15 | 99 | 8.09e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 63 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTGCAGATGACCCTTTA+AGG | 0.106528 | 1_3:-16889413 | None:intergenic |
| TCTATTGTGATGATAATATT+TGG | 0.179330 | 1_3:+16889756 | Msa0106990:CDS |
| GTGCTCAAAAGGAAATATTT+TGG | 0.198072 | 1_3:+16888619 | Msa0106990:CDS |
| TGCAGGTTGGCATAAATTTA+AGG | 0.202920 | 1_3:+16890472 | Msa0106990:CDS |
| TTACGCTCATGGCTATATTT+TGG | 0.211055 | 1_3:+16889155 | Msa0106990:CDS |
| AGAAATTTGTGGAGAAATAT+TGG | 0.241294 | 1_3:+16888556 | Msa0106990:CDS |
| ATGTTTGGTTTAAGAGAAAT+TGG | 0.245872 | 1_3:+16888658 | Msa0106990:CDS |
| TTTGGGAGTCTAAGAATTAC+TGG | 0.267570 | 1_3:-16888594 | None:intergenic |
| TATTTGAATGACAACCTTAA+AGG | 0.276541 | 1_3:+16889399 | Msa0106990:CDS |
| AGTCTAAGAATTACTGGATT+TGG | 0.299817 | 1_3:-16888588 | None:intergenic |
| ACTATCTTCAAGAACTCTTC+TGG | 0.314590 | 1_3:-16888266 | None:intergenic |
| ATATTTCTCCACAAATTTCT+TGG | 0.318034 | 1_3:-16888553 | None:intergenic |
| ACAAAGGAGGCATAATTAAG+AGG | 0.349731 | 1_3:+16889058 | Msa0106990:CDS |
| AACTTCACCTCCACTTTCAT+AGG | 0.353581 | 1_3:-16889456 | None:intergenic |
| ATTTGAATGACAACCTTAAA+GGG | 0.391511 | 1_3:+16889400 | Msa0106990:CDS |
| TATTTCTCCACAAATTTCTT+GGG | 0.405795 | 1_3:-16888552 | None:intergenic |
| TCATCTGCAAGCATTAGATT+TGG | 0.416468 | 1_3:+16889423 | Msa0106990:CDS |
| AAATTCGTGCAGTTCACAAA+TGG | 0.417597 | 1_3:+16890389 | Msa0106990:CDS |
| GAAGATTGCGGATTGAAGAT+TGG | 0.417689 | 1_3:+16890494 | Msa0106990:CDS |
| TTTGCAAAGTCTCTAAAAGA+TGG | 0.419454 | 1_3:+16888687 | Msa0106990:CDS |
| GACAATTCAAGTTCAAAACT+TGG | 0.430631 | 1_3:-16889126 | None:intergenic |
| AATTCGTGCAGTTCACAAAT+GGG | 0.433283 | 1_3:+16890390 | Msa0106990:CDS |
| AGGAGCGTGAAGGTGATGTT+TGG | 0.450557 | 1_3:+16888643 | Msa0106990:CDS |
| GAACAATGACAAGGTTATGA+AGG | 0.451012 | 1_3:+16889728 | Msa0106990:intron |
| ACTCCCAAATGGTGCTCAAA+AGG | 0.455326 | 1_3:+16888608 | Msa0106990:CDS |
| GAGGGTTCCCAAGAAATTTG+TGG | 0.458170 | 1_3:+16888545 | Msa0106990:intron |
| ACACGAATCTCGATTGTGTT+CGG | 0.462954 | 1_3:-16890221 | None:intergenic |
| TTTGGCTTGGGTGATAGTTA+TGG | 0.473644 | 1_3:-16889607 | None:intergenic |
| ATGAGAATGAGAGAACTTGT+AGG | 0.473892 | 1_3:+16890444 | Msa0106990:CDS |
| TGTGTTTCAGCAGACTTAGA+AGG | 0.481816 | 1_3:+16890182 | Msa0106990:intron |
| TGTTTGGTTTAAGAGAAATT+GGG | 0.491470 | 1_3:+16888659 | Msa0106990:CDS |
| GATATTTGGTCACAATACAT+TGG | 0.502848 | 1_3:+16888758 | Msa0106990:CDS |
| AGAACTTGTAGGTTCTATGC+AGG | 0.508431 | 1_3:+16890455 | Msa0106990:CDS |
| AGTACATACTCGAGAGATCA+TGG | 0.515974 | 1_3:-16889814 | None:intergenic |
| CATAAATTTAAGGAAGATTG+CGG | 0.529511 | 1_3:+16890482 | Msa0106990:CDS |
| GAGGCATTGAAGGAAGTTCA+AGG | 0.529967 | 1_3:+16889786 | Msa0106990:CDS |
| CTTGTAGGTTCTATGCAGGT+TGG | 0.536785 | 1_3:+16890459 | Msa0106990:CDS |
| TTCATAGATGAAAGTTGTGA+AGG | 0.538273 | 1_3:+16888804 | Msa0106990:CDS |
| CAAAGGAGGCATAATTAAGA+GGG | 0.540734 | 1_3:+16889059 | Msa0106990:CDS |
| ATAGTTATGGTGAATGAAAG+TGG | 0.542900 | 1_3:-16889594 | None:intergenic |
| GTAATTCTTAGACTCCCAAA+TGG | 0.561023 | 1_3:+16888597 | Msa0106990:CDS |
| AGAACATGCATTGTGACCTC+TGG | 0.567004 | 1_3:+16889498 | Msa0106990:CDS |
| GATGGCAATGTTAATAGTGC+TGG | 0.575875 | 1_3:+16888861 | Msa0106990:CDS |
| CTTAGAAGGTGGTAATGTGA+TGG | 0.576917 | 1_3:+16890196 | Msa0106990:CDS |
| TTGTCACAATCTTACGCTCA+TGG | 0.577647 | 1_3:+16889144 | Msa0106990:CDS |
| AACTTTGCAGGTAAGAACAA+AGG | 0.579693 | 1_3:+16889042 | Msa0106990:intron |
| GGCAAATGGCTTCCAACCAG+AGG | 0.580163 | 1_3:-16889514 | None:intergenic |
| TATGCTCTTGAAAAGTCACT+TGG | 0.596669 | 1_3:-16889378 | None:intergenic |
| CATAAATAATCCTACCGGGT+AGG | 0.597503 | 1_3:-16890252 | None:intergenic |
| AAGAGACATAAAGAGTGTCA+TGG | 0.604494 | 1_3:+16890365 | Msa0106990:CDS |
| TGAGAACATGCCTATGAAAG+TGG | 0.608998 | 1_3:+16889446 | Msa0106990:CDS |
| TTCGTGCAGTTCACAAATGG+GGG | 0.622353 | 1_3:+16890392 | Msa0106990:CDS |
| ATTCGTGCAGTTCACAAATG+GGG | 0.622898 | 1_3:+16890391 | Msa0106990:CDS |
| GTTTCAGCAGACTTAGAAGG+TGG | 0.625758 | 1_3:+16890185 | Msa0106990:intron |
| ATAGTGCTGGCACATCTCAA+AGG | 0.625943 | 1_3:+16888874 | Msa0106990:CDS |
| CATGCATTGTGACCTCTGGT+TGG | 0.634224 | 1_3:+16889502 | Msa0106990:CDS |
| ATAACTATCACCCAAGCCAA+AGG | 0.651162 | 1_3:+16889609 | Msa0106990:CDS |
| GCAGAACAAACAACTAGTGG+TGG | 0.662011 | 1_3:-16890586 | None:intergenic |
| TCGTGTGAACTCTACCTACC+CGG | 0.663506 | 1_3:+16890238 | Msa0106990:CDS |
| CAAAATCATGAACTACACAA+TGG | 0.670560 | 1_3:+16888290 | Msa0106990:CDS |
| GAAGTTGTTGAACTGAGTGA+TGG | 0.670925 | 1_3:+16888843 | Msa0106990:CDS |
| TTTGCAGGTAAGAACAAAGG+AGG | 0.676867 | 1_3:+16889045 | Msa0106990:intron |
| GAACATGCCTATGAAAGTGG+AGG | 0.736568 | 1_3:+16889449 | Msa0106990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAATAAAATAAAATTACA+AGG | - | chr1_3:16888978-16888997 | None:intergenic | 10.0% |
| !!! | TGTAATTTTATTTTATTTTG+AGG | + | chr1_3:16888978-16888997 | Msa0106990:intron | 10.0% |
| !!! | AAATAATTTGTAATATATGA+GGG | - | chr1_3:16890022-16890041 | None:intergenic | 10.0% |
| !!! | TAAATAATTTGTAATATATG+AGG | - | chr1_3:16890023-16890042 | None:intergenic | 10.0% |
| !! | ACAAATTATTTAATATTTCA+AGG | + | chr1_3:16890031-16890050 | Msa0106990:intron | 10.0% |
| !! | CAAAATAAAATAAAATTACA+AGG | - | chr1_3:16888978-16888997 | None:intergenic | 10.0% |
| !!! | TGTAATTTTATTTTATTTTG+AGG | + | chr1_3:16888978-16888997 | Msa0106990:intron | 10.0% |
| !!! | AAATAATTTGTAATATATGA+GGG | - | chr1_3:16890022-16890041 | None:intergenic | 10.0% |
| !!! | TAAATAATTTGTAATATATG+AGG | - | chr1_3:16890023-16890042 | None:intergenic | 10.0% |
| !! | ACAAATTATTTAATATTTCA+AGG | + | chr1_3:16890031-16890050 | Msa0106990:intron | 10.0% |
| !! | GTTATTTAATTATAGTTGAA+AGG | - | chr1_3:16888424-16888443 | None:intergenic | 15.0% |
| !!! | ATTAATAACAAAAGTATAGT+TGG | - | chr1_3:16888450-16888469 | None:intergenic | 15.0% |
| !! | ATAAGTATAATTAATGCAAA+GGG | - | chr1_3:16888503-16888522 | None:intergenic | 15.0% |
| !! | ATATCTTAACCTTAAAATAT+GGG | - | chr1_3:16888743-16888762 | None:intergenic | 15.0% |
| !! | AATATCTTAACCTTAAAATA+TGG | - | chr1_3:16888744-16888763 | None:intergenic | 15.0% |
| !!! | TATTTTAAGGTTAAGATATT+TGG | + | chr1_3:16888744-16888763 | Msa0106990:intron | 15.0% |
| !!! | TTCATCTATGAATTTTATAT+TGG | - | chr1_3:16888796-16888815 | None:intergenic | 15.0% |
| !!! | TAAGTATAATGTTTTATAGT+AGG | - | chr1_3:16889185-16889204 | None:intergenic | 15.0% |
| !!! | TGTTCTAAATTATTGTTTAT+TGG | + | chr1_3:16889235-16889254 | Msa0106990:intron | 15.0% |
| !!! | AACTTGTAAGTTATATTTTT+TGG | - | chr1_3:16889538-16889557 | None:intergenic | 15.0% |
| !! | AAAAAATATAACTTACAAGT+TGG | + | chr1_3:16889537-16889556 | Msa0106990:CDS | 15.0% |
| !!! | CTTTTTTAAATAAAGTATGA+AGG | - | chr1_3:16889640-16889659 | None:intergenic | 15.0% |
| !!! | GTTTAAATTTTTTAGAGAAT+AGG | + | chr1_3:16889838-16889857 | Msa0106990:intron | 15.0% |
| !!! | CTTTTCAAAAAATTATAACT+AGG | + | chr1_3:16889894-16889913 | Msa0106990:intron | 15.0% |
| !!! | ATAAAATTTAAAACAGAACT+TGG | - | chr1_3:16889962-16889981 | None:intergenic | 15.0% |
| !!! | CTTGAACTAATATTTTTAAT+TGG | - | chr1_3:16890059-16890078 | None:intergenic | 15.0% |
| !! | GTTATTTAATTATAGTTGAA+AGG | - | chr1_3:16888424-16888443 | None:intergenic | 15.0% |
| !!! | ATTAATAACAAAAGTATAGT+TGG | - | chr1_3:16888450-16888469 | None:intergenic | 15.0% |
| !! | ATAAGTATAATTAATGCAAA+GGG | - | chr1_3:16888503-16888522 | None:intergenic | 15.0% |
| !! | ATATCTTAACCTTAAAATAT+GGG | - | chr1_3:16888743-16888762 | None:intergenic | 15.0% |
| !! | AATATCTTAACCTTAAAATA+TGG | - | chr1_3:16888744-16888763 | None:intergenic | 15.0% |
| !!! | TATTTTAAGGTTAAGATATT+TGG | + | chr1_3:16888744-16888763 | Msa0106990:intron | 15.0% |
| !!! | TTCATCTATGAATTTTATAT+TGG | - | chr1_3:16888796-16888815 | None:intergenic | 15.0% |
| !!! | TAAGTATAATGTTTTATAGT+AGG | - | chr1_3:16889185-16889204 | None:intergenic | 15.0% |
| !!! | TGTTCTAAATTATTGTTTAT+TGG | + | chr1_3:16889235-16889254 | Msa0106990:intron | 15.0% |
| !!! | AACTTGTAAGTTATATTTTT+TGG | - | chr1_3:16889538-16889557 | None:intergenic | 15.0% |
| !! | AAAAAATATAACTTACAAGT+TGG | + | chr1_3:16889537-16889556 | Msa0106990:CDS | 15.0% |
| !!! | CTTTTTTAAATAAAGTATGA+AGG | - | chr1_3:16889640-16889659 | None:intergenic | 15.0% |
| !!! | GTTTAAATTTTTTAGAGAAT+AGG | + | chr1_3:16889838-16889857 | Msa0106990:intron | 15.0% |
| !!! | CTTTTCAAAAAATTATAACT+AGG | + | chr1_3:16889894-16889913 | Msa0106990:intron | 15.0% |
| !!! | ATAAAATTTAAAACAGAACT+TGG | - | chr1_3:16889962-16889981 | None:intergenic | 15.0% |
| !!! | CTTGAACTAATATTTTTAAT+TGG | - | chr1_3:16890059-16890078 | None:intergenic | 15.0% |
| !! | GATAAGTATAATTAATGCAA+AGG | - | chr1_3:16888504-16888523 | None:intergenic | 20.0% |
| !!! | GCTTTAGTTTTCAAATATTT+AGG | + | chr1_3:16888714-16888733 | Msa0106990:intron | 20.0% |
| !!! | TTAGTTTTCAAATATTTAGG+TGG | + | chr1_3:16888717-16888736 | Msa0106990:intron | 20.0% |
| !!! | ATCTATTTTAGCCATTTATA+AGG | - | chr1_3:16889011-16889030 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTTTTAACTTTGC+AGG | + | chr1_3:16889030-16889049 | Msa0106990:intron | 20.0% |
| !!! | AACAAAGTTACTAGTAATTT+TGG | + | chr1_3:16889310-16889329 | Msa0106990:intron | 20.0% |
| !!! | AAGTTATATTTTTTGGCAAA+TGG | - | chr1_3:16889531-16889550 | None:intergenic | 20.0% |
| !! | CAATTGATATTAAGCAAATT+TGG | - | chr1_3:16889690-16889709 | None:intergenic | 20.0% |
| !! | TCTATTGTGATGATAATATT+TGG | + | chr1_3:16889756-16889775 | Msa0106990:CDS | 20.0% |
| !! | GATAATATTTGGAAAAAAAG+AGG | + | chr1_3:16889767-16889786 | Msa0106990:CDS | 20.0% |
| !! | TTTAACATAAATAATCCTAC+CGG | - | chr1_3:16890260-16890279 | None:intergenic | 20.0% |
| !! | AGGATTATTTATGTTAAATG+TGG | + | chr1_3:16890262-16890281 | Msa0106990:intron | 20.0% |
| !! | GATAAGTATAATTAATGCAA+AGG | - | chr1_3:16888504-16888523 | None:intergenic | 20.0% |
| !!! | GCTTTAGTTTTCAAATATTT+AGG | + | chr1_3:16888714-16888733 | Msa0106990:intron | 20.0% |
| !!! | TTAGTTTTCAAATATTTAGG+TGG | + | chr1_3:16888717-16888736 | Msa0106990:intron | 20.0% |
| !!! | ATCTATTTTAGCCATTTATA+AGG | - | chr1_3:16889011-16889030 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTTTTAACTTTGC+AGG | + | chr1_3:16889030-16889049 | Msa0106990:intron | 20.0% |
| !!! | AACAAAGTTACTAGTAATTT+TGG | + | chr1_3:16889310-16889329 | Msa0106990:intron | 20.0% |
| !!! | AAGTTATATTTTTTGGCAAA+TGG | - | chr1_3:16889531-16889550 | None:intergenic | 20.0% |
| !! | CAATTGATATTAAGCAAATT+TGG | - | chr1_3:16889690-16889709 | None:intergenic | 20.0% |
| !! | TCTATTGTGATGATAATATT+TGG | + | chr1_3:16889756-16889775 | Msa0106990:CDS | 20.0% |
| !! | GATAATATTTGGAAAAAAAG+AGG | + | chr1_3:16889767-16889786 | Msa0106990:CDS | 20.0% |
| !! | TTTAACATAAATAATCCTAC+CGG | - | chr1_3:16890260-16890279 | None:intergenic | 20.0% |
| !! | AGGATTATTTATGTTAAATG+TGG | + | chr1_3:16890262-16890281 | Msa0106990:intron | 20.0% |
| ! | CTGAAACAGATAATCATTTA+TGG | - | chr1_3:16888526-16888545 | None:intergenic | 25.0% |
| ! | TAAATGATTATCTGTTTCAG+AGG | + | chr1_3:16888526-16888545 | Msa0106990:intron | 25.0% |
| ! | AAATGATTATCTGTTTCAGA+GGG | + | chr1_3:16888527-16888546 | Msa0106990:intron | 25.0% |
| ! | TATTTCTCCACAAATTTCTT+GGG | - | chr1_3:16888555-16888574 | None:intergenic | 25.0% |
| ! | ATATTTCTCCACAAATTTCT+TGG | - | chr1_3:16888556-16888575 | None:intergenic | 25.0% |
| ! | AGAAATTTGTGGAGAAATAT+TGG | + | chr1_3:16888556-16888575 | Msa0106990:CDS | 25.0% |
| !! | TGCTCAAAAGGAAATATTTT+GGG | + | chr1_3:16888620-16888639 | Msa0106990:CDS | 25.0% |
| !! | ATGTTTGGTTTAAGAGAAAT+TGG | + | chr1_3:16888658-16888677 | Msa0106990:CDS | 25.0% |
| !! | TGTTTGGTTTAAGAGAAATT+GGG | + | chr1_3:16888659-16888678 | Msa0106990:CDS | 25.0% |
| ! | ATTAATCAGCAAAAAATCTC+TGG | + | chr1_3:16888918-16888937 | Msa0106990:CDS | 25.0% |
| ! | TAAACCTTGAATTGAAATAG+AGG | + | chr1_3:16889352-16889371 | Msa0106990:intron | 25.0% |
| ! | TATTTGAATGACAACCTTAA+AGG | + | chr1_3:16889399-16889418 | Msa0106990:CDS | 25.0% |
| ! | ATTTGAATGACAACCTTAAA+GGG | + | chr1_3:16889400-16889419 | Msa0106990:CDS | 25.0% |
| !! | TAACTAGGTTTTCTTACTTT+AGG | + | chr1_3:16889909-16889928 | Msa0106990:intron | 25.0% |
| ! | TTAACATAAATAATCCTACC+GGG | - | chr1_3:16890259-16890278 | None:intergenic | 25.0% |
| !! | TCATAATATTGCACTTTTAC+AGG | - | chr1_3:16890428-16890447 | None:intergenic | 25.0% |
| ! | CATAAATTTAAGGAAGATTG+CGG | + | chr1_3:16890482-16890501 | Msa0106990:CDS | 25.0% |
| ! | CTGAAACAGATAATCATTTA+TGG | - | chr1_3:16888526-16888545 | None:intergenic | 25.0% |
| ! | TAAATGATTATCTGTTTCAG+AGG | + | chr1_3:16888526-16888545 | Msa0106990:intron | 25.0% |
| ! | AAATGATTATCTGTTTCAGA+GGG | + | chr1_3:16888527-16888546 | Msa0106990:intron | 25.0% |
| ! | TATTTCTCCACAAATTTCTT+GGG | - | chr1_3:16888555-16888574 | None:intergenic | 25.0% |
| ! | ATATTTCTCCACAAATTTCT+TGG | - | chr1_3:16888556-16888575 | None:intergenic | 25.0% |
| ! | AGAAATTTGTGGAGAAATAT+TGG | + | chr1_3:16888556-16888575 | Msa0106990:CDS | 25.0% |
| !! | TGCTCAAAAGGAAATATTTT+GGG | + | chr1_3:16888620-16888639 | Msa0106990:CDS | 25.0% |
| !! | ATGTTTGGTTTAAGAGAAAT+TGG | + | chr1_3:16888658-16888677 | Msa0106990:CDS | 25.0% |
| !! | TGTTTGGTTTAAGAGAAATT+GGG | + | chr1_3:16888659-16888678 | Msa0106990:CDS | 25.0% |
| ! | ATTAATCAGCAAAAAATCTC+TGG | + | chr1_3:16888918-16888937 | Msa0106990:CDS | 25.0% |
| ! | TAAACCTTGAATTGAAATAG+AGG | + | chr1_3:16889352-16889371 | Msa0106990:intron | 25.0% |
| ! | TATTTGAATGACAACCTTAA+AGG | + | chr1_3:16889399-16889418 | Msa0106990:CDS | 25.0% |
| ! | ATTTGAATGACAACCTTAAA+GGG | + | chr1_3:16889400-16889419 | Msa0106990:CDS | 25.0% |
| !! | TAACTAGGTTTTCTTACTTT+AGG | + | chr1_3:16889909-16889928 | Msa0106990:intron | 25.0% |
| ! | TTAACATAAATAATCCTACC+GGG | - | chr1_3:16890259-16890278 | None:intergenic | 25.0% |
| !! | TCATAATATTGCACTTTTAC+AGG | - | chr1_3:16890428-16890447 | None:intergenic | 25.0% |
| ! | CATAAATTTAAGGAAGATTG+CGG | + | chr1_3:16890482-16890501 | Msa0106990:CDS | 25.0% |
| CAAAATCATGAACTACACAA+TGG | + | chr1_3:16888290-16888309 | Msa0106990:CDS | 30.0% | |
| AGTCTAAGAATTACTGGATT+TGG | - | chr1_3:16888591-16888610 | None:intergenic | 30.0% | |
| ! | GTGCTCAAAAGGAAATATTT+TGG | + | chr1_3:16888619-16888638 | Msa0106990:CDS | 30.0% |
| !! | TCAAAAGGAAATATTTTGGG+AGG | + | chr1_3:16888623-16888642 | Msa0106990:CDS | 30.0% |
| ! | TTTGCAAAGTCTCTAAAAGA+TGG | + | chr1_3:16888687-16888706 | Msa0106990:CDS | 30.0% |
| GATATTTGGTCACAATACAT+TGG | + | chr1_3:16888758-16888777 | Msa0106990:CDS | 30.0% | |
| TTCATAGATGAAAGTTGTGA+AGG | + | chr1_3:16888804-16888823 | Msa0106990:CDS | 30.0% | |
| ! | GAGGTATTCTACCTTATAAA+TGG | + | chr1_3:16888997-16889016 | Msa0106990:intron | 30.0% |
| ! | GACAATTCAAGTTCAAAACT+TGG | - | chr1_3:16889129-16889148 | None:intergenic | 30.0% |
| GTATCCTCTATTTCAATTCA+AGG | - | chr1_3:16889359-16889378 | None:intergenic | 30.0% | |
| ATAGTTATGGTGAATGAAAG+TGG | - | chr1_3:16889597-16889616 | None:intergenic | 30.0% | |
| AAGTATGAAGGAAAAACCTT+TGG | - | chr1_3:16889628-16889647 | None:intergenic | 30.0% | |
| TTGTCATTGTTCAAAGGAAT+TGG | - | chr1_3:16889720-16889739 | None:intergenic | 30.0% | |
| AATTCCTTTGAACAATGACA+AGG | + | chr1_3:16889719-16889738 | Msa0106990:intron | 30.0% | |
| ATAACCTTGTCATTGTTCAA+AGG | - | chr1_3:16889726-16889745 | None:intergenic | 30.0% | |
| ATTTGTAATATATGAGGGAG+AGG | - | chr1_3:16890017-16890036 | None:intergenic | 30.0% | |
| CAAAATCATGAACTACACAA+TGG | + | chr1_3:16888290-16888309 | Msa0106990:CDS | 30.0% | |
| AGTCTAAGAATTACTGGATT+TGG | - | chr1_3:16888591-16888610 | None:intergenic | 30.0% | |
| ! | GTGCTCAAAAGGAAATATTT+TGG | + | chr1_3:16888619-16888638 | Msa0106990:CDS | 30.0% |
| !! | TCAAAAGGAAATATTTTGGG+AGG | + | chr1_3:16888623-16888642 | Msa0106990:CDS | 30.0% |
| ! | TTTGCAAAGTCTCTAAAAGA+TGG | + | chr1_3:16888687-16888706 | Msa0106990:CDS | 30.0% |
| GATATTTGGTCACAATACAT+TGG | + | chr1_3:16888758-16888777 | Msa0106990:CDS | 30.0% | |
| TTCATAGATGAAAGTTGTGA+AGG | + | chr1_3:16888804-16888823 | Msa0106990:CDS | 30.0% | |
| ! | GAGGTATTCTACCTTATAAA+TGG | + | chr1_3:16888997-16889016 | Msa0106990:intron | 30.0% |
| ! | GACAATTCAAGTTCAAAACT+TGG | - | chr1_3:16889129-16889148 | None:intergenic | 30.0% |
| GTATCCTCTATTTCAATTCA+AGG | - | chr1_3:16889359-16889378 | None:intergenic | 30.0% | |
| ATAGTTATGGTGAATGAAAG+TGG | - | chr1_3:16889597-16889616 | None:intergenic | 30.0% | |
| AAGTATGAAGGAAAAACCTT+TGG | - | chr1_3:16889628-16889647 | None:intergenic | 30.0% | |
| TTGTCATTGTTCAAAGGAAT+TGG | - | chr1_3:16889720-16889739 | None:intergenic | 30.0% | |
| AATTCCTTTGAACAATGACA+AGG | + | chr1_3:16889719-16889738 | Msa0106990:intron | 30.0% | |
| ATAACCTTGTCATTGTTCAA+AGG | - | chr1_3:16889726-16889745 | None:intergenic | 30.0% | |
| ATTTGTAATATATGAGGGAG+AGG | - | chr1_3:16890017-16890036 | None:intergenic | 30.0% | |
| ACTATCTTCAAGAACTCTTC+TGG | - | chr1_3:16888269-16888288 | None:intergenic | 35.0% | |
| TTTGGGAGTCTAAGAATTAC+TGG | - | chr1_3:16888597-16888616 | None:intergenic | 35.0% | |
| GTAATTCTTAGACTCCCAAA+TGG | + | chr1_3:16888597-16888616 | Msa0106990:CDS | 35.0% | |
| ! | TTTCCTTTTGAGCACCATTT+GGG | - | chr1_3:16888614-16888633 | None:intergenic | 35.0% |
| ! | ATTTCCTTTTGAGCACCATT+TGG | - | chr1_3:16888615-16888634 | None:intergenic | 35.0% |
| ! | TTTAGGTGGCCCATATTTTA+AGG | + | chr1_3:16888731-16888750 | Msa0106990:intron | 35.0% |
| ACATCTCAAAGGAGAAAAAG+TGG | + | chr1_3:16888885-16888904 | Msa0106990:CDS | 35.0% | |
| AACTTTGCAGGTAAGAACAA+AGG | + | chr1_3:16889042-16889061 | Msa0106990:intron | 35.0% | |
| ! | ACAAAGGAGGCATAATTAAG+AGG | + | chr1_3:16889058-16889077 | Msa0106990:CDS | 35.0% |
| ! | CAAAGGAGGCATAATTAAGA+GGG | + | chr1_3:16889059-16889078 | Msa0106990:CDS | 35.0% |
| ! | TTACGCTCATGGCTATATTT+TGG | + | chr1_3:16889155-16889174 | Msa0106990:CDS | 35.0% |
| TATGCTCTTGAAAAGTCACT+TGG | - | chr1_3:16889381-16889400 | None:intergenic | 35.0% | |
| TCATCTGCAAGCATTAGATT+TGG | + | chr1_3:16889423-16889442 | Msa0106990:CDS | 35.0% | |
| GAACAATGACAAGGTTATGA+AGG | + | chr1_3:16889728-16889747 | Msa0106990:intron | 35.0% | |
| !! | TGGAAAAAAAGAGGCATTGA+AGG | + | chr1_3:16889776-16889795 | Msa0106990:CDS | 35.0% |
| !! | AAGAGACATAAAGAGTGTCA+TGG | + | chr1_3:16890365-16890384 | Msa0106990:CDS | 35.0% |
| AAATTCGTGCAGTTCACAAA+TGG | + | chr1_3:16890389-16890408 | Msa0106990:CDS | 35.0% | |
| AATTCGTGCAGTTCACAAAT+GGG | + | chr1_3:16890390-16890409 | Msa0106990:CDS | 35.0% | |
| ATGAGAATGAGAGAACTTGT+AGG | + | chr1_3:16890444-16890463 | Msa0106990:CDS | 35.0% | |
| ! | TGCAGGTTGGCATAAATTTA+AGG | + | chr1_3:16890472-16890491 | Msa0106990:CDS | 35.0% |
| ACTATCTTCAAGAACTCTTC+TGG | - | chr1_3:16888269-16888288 | None:intergenic | 35.0% | |
| TTTGGGAGTCTAAGAATTAC+TGG | - | chr1_3:16888597-16888616 | None:intergenic | 35.0% | |
| GTAATTCTTAGACTCCCAAA+TGG | + | chr1_3:16888597-16888616 | Msa0106990:CDS | 35.0% | |
| ! | TTTCCTTTTGAGCACCATTT+GGG | - | chr1_3:16888614-16888633 | None:intergenic | 35.0% |
| ! | ATTTCCTTTTGAGCACCATT+TGG | - | chr1_3:16888615-16888634 | None:intergenic | 35.0% |
| ! | TTTAGGTGGCCCATATTTTA+AGG | + | chr1_3:16888731-16888750 | Msa0106990:intron | 35.0% |
| ACATCTCAAAGGAGAAAAAG+TGG | + | chr1_3:16888885-16888904 | Msa0106990:CDS | 35.0% | |
| AACTTTGCAGGTAAGAACAA+AGG | + | chr1_3:16889042-16889061 | Msa0106990:intron | 35.0% | |
| ! | ACAAAGGAGGCATAATTAAG+AGG | + | chr1_3:16889058-16889077 | Msa0106990:CDS | 35.0% |
| ! | CAAAGGAGGCATAATTAAGA+GGG | + | chr1_3:16889059-16889078 | Msa0106990:CDS | 35.0% |
| ! | TTACGCTCATGGCTATATTT+TGG | + | chr1_3:16889155-16889174 | Msa0106990:CDS | 35.0% |
| TATGCTCTTGAAAAGTCACT+TGG | - | chr1_3:16889381-16889400 | None:intergenic | 35.0% | |
| TCATCTGCAAGCATTAGATT+TGG | + | chr1_3:16889423-16889442 | Msa0106990:CDS | 35.0% | |
| GAACAATGACAAGGTTATGA+AGG | + | chr1_3:16889728-16889747 | Msa0106990:intron | 35.0% | |
| !! | TGGAAAAAAAGAGGCATTGA+AGG | + | chr1_3:16889776-16889795 | Msa0106990:CDS | 35.0% |
| !! | AAGAGACATAAAGAGTGTCA+TGG | + | chr1_3:16890365-16890384 | Msa0106990:CDS | 35.0% |
| AAATTCGTGCAGTTCACAAA+TGG | + | chr1_3:16890389-16890408 | Msa0106990:CDS | 35.0% | |
| AATTCGTGCAGTTCACAAAT+GGG | + | chr1_3:16890390-16890409 | Msa0106990:CDS | 35.0% | |
| ATGAGAATGAGAGAACTTGT+AGG | + | chr1_3:16890444-16890463 | Msa0106990:CDS | 35.0% | |
| ! | TGCAGGTTGGCATAAATTTA+AGG | + | chr1_3:16890472-16890491 | Msa0106990:CDS | 35.0% |
| GAAGTTGTTGAACTGAGTGA+TGG | + | chr1_3:16888843-16888862 | Msa0106990:CDS | 40.0% | |
| GATGGCAATGTTAATAGTGC+TGG | + | chr1_3:16888861-16888880 | Msa0106990:CDS | 40.0% | |
| TTTGCAGGTAAGAACAAAGG+AGG | + | chr1_3:16889045-16889064 | Msa0106990:intron | 40.0% | |
| TTGTCACAATCTTACGCTCA+TGG | + | chr1_3:16889144-16889163 | Msa0106990:CDS | 40.0% | |
| TGAGAACATGCCTATGAAAG+TGG | + | chr1_3:16889446-16889465 | Msa0106990:CDS | 40.0% | |
| AACTTCACCTCCACTTTCAT+AGG | - | chr1_3:16889459-16889478 | None:intergenic | 40.0% | |
| !! | TTTGGCTTGGGTGATAGTTA+TGG | - | chr1_3:16889610-16889629 | None:intergenic | 40.0% |
| ATAACTATCACCCAAGCCAA+AGG | + | chr1_3:16889609-16889628 | Msa0106990:CDS | 40.0% | |
| ! | GAAGGAAAAACCTTTGGCTT+GGG | - | chr1_3:16889622-16889641 | None:intergenic | 40.0% |
| TGAAGGAAAAACCTTTGGCT+TGG | - | chr1_3:16889623-16889642 | None:intergenic | 40.0% | |
| AGTACATACTCGAGAGATCA+TGG | - | chr1_3:16889817-16889836 | None:intergenic | 40.0% | |
| TGTGTTTCAGCAGACTTAGA+AGG | + | chr1_3:16890182-16890201 | Msa0106990:intron | 40.0% | |
| ! | CTTAGAAGGTGGTAATGTGA+TGG | + | chr1_3:16890196-16890215 | Msa0106990:CDS | 40.0% |
| ACACGAATCTCGATTGTGTT+CGG | - | chr1_3:16890224-16890243 | None:intergenic | 40.0% | |
| CATAAATAATCCTACCGGGT+AGG | - | chr1_3:16890255-16890274 | None:intergenic | 40.0% | |
| ATTCGTGCAGTTCACAAATG+GGG | + | chr1_3:16890391-16890410 | Msa0106990:CDS | 40.0% | |
| TCACAAATGGGGGAAAATCA+TGG | + | chr1_3:16890402-16890421 | Msa0106990:CDS | 40.0% | |
| AGAACTTGTAGGTTCTATGC+AGG | + | chr1_3:16890455-16890474 | Msa0106990:CDS | 40.0% | |
| ! | GAAGATTGCGGATTGAAGAT+TGG | + | chr1_3:16890494-16890513 | Msa0106990:CDS | 40.0% |
| GAAGTTGTTGAACTGAGTGA+TGG | + | chr1_3:16888843-16888862 | Msa0106990:CDS | 40.0% | |
| GATGGCAATGTTAATAGTGC+TGG | + | chr1_3:16888861-16888880 | Msa0106990:CDS | 40.0% | |
| TTTGCAGGTAAGAACAAAGG+AGG | + | chr1_3:16889045-16889064 | Msa0106990:intron | 40.0% | |
| TTGTCACAATCTTACGCTCA+TGG | + | chr1_3:16889144-16889163 | Msa0106990:CDS | 40.0% | |
| TGAGAACATGCCTATGAAAG+TGG | + | chr1_3:16889446-16889465 | Msa0106990:CDS | 40.0% | |
| AACTTCACCTCCACTTTCAT+AGG | - | chr1_3:16889459-16889478 | None:intergenic | 40.0% | |
| !! | TTTGGCTTGGGTGATAGTTA+TGG | - | chr1_3:16889610-16889629 | None:intergenic | 40.0% |
| ATAACTATCACCCAAGCCAA+AGG | + | chr1_3:16889609-16889628 | Msa0106990:CDS | 40.0% | |
| ! | GAAGGAAAAACCTTTGGCTT+GGG | - | chr1_3:16889622-16889641 | None:intergenic | 40.0% |
| TGAAGGAAAAACCTTTGGCT+TGG | - | chr1_3:16889623-16889642 | None:intergenic | 40.0% | |
| AGTACATACTCGAGAGATCA+TGG | - | chr1_3:16889817-16889836 | None:intergenic | 40.0% | |
| TGTGTTTCAGCAGACTTAGA+AGG | + | chr1_3:16890182-16890201 | Msa0106990:intron | 40.0% | |
| ! | CTTAGAAGGTGGTAATGTGA+TGG | + | chr1_3:16890196-16890215 | Msa0106990:CDS | 40.0% |
| ACACGAATCTCGATTGTGTT+CGG | - | chr1_3:16890224-16890243 | None:intergenic | 40.0% | |
| CATAAATAATCCTACCGGGT+AGG | - | chr1_3:16890255-16890274 | None:intergenic | 40.0% | |
| ATTCGTGCAGTTCACAAATG+GGG | + | chr1_3:16890391-16890410 | Msa0106990:CDS | 40.0% | |
| TCACAAATGGGGGAAAATCA+TGG | + | chr1_3:16890402-16890421 | Msa0106990:CDS | 40.0% | |
| AGAACTTGTAGGTTCTATGC+AGG | + | chr1_3:16890455-16890474 | Msa0106990:CDS | 40.0% | |
| ! | GAAGATTGCGGATTGAAGAT+TGG | + | chr1_3:16890494-16890513 | Msa0106990:CDS | 40.0% |
| GAGGGTTCCCAAGAAATTTG+TGG | + | chr1_3:16888545-16888564 | Msa0106990:intron | 45.0% | |
| ACTCCCAAATGGTGCTCAAA+AGG | + | chr1_3:16888608-16888627 | Msa0106990:CDS | 45.0% | |
| !! | ATATTTTGGGAGGAGCGTGA+AGG | + | chr1_3:16888633-16888652 | Msa0106990:CDS | 45.0% |
| !! | ATAGTGCTGGCACATCTCAA+AGG | + | chr1_3:16888874-16888893 | Msa0106990:CDS | 45.0% |
| TGCTTGCAGATGACCCTTTA+AGG | - | chr1_3:16889416-16889435 | None:intergenic | 45.0% | |
| GAACATGCCTATGAAAGTGG+AGG | + | chr1_3:16889449-16889468 | Msa0106990:CDS | 45.0% | |
| AGAACATGCATTGTGACCTC+TGG | + | chr1_3:16889498-16889517 | Msa0106990:CDS | 45.0% | |
| !! | GAGGCATTGAAGGAAGTTCA+AGG | + | chr1_3:16889786-16889805 | Msa0106990:CDS | 45.0% |
| GTTTCAGCAGACTTAGAAGG+TGG | + | chr1_3:16890185-16890204 | Msa0106990:intron | 45.0% | |
| TTCGTGCAGTTCACAAATGG+GGG | + | chr1_3:16890392-16890411 | Msa0106990:CDS | 45.0% | |
| CTTGTAGGTTCTATGCAGGT+TGG | + | chr1_3:16890459-16890478 | Msa0106990:CDS | 45.0% | |
| GAGGGTTCCCAAGAAATTTG+TGG | + | chr1_3:16888545-16888564 | Msa0106990:intron | 45.0% | |
| ACTCCCAAATGGTGCTCAAA+AGG | + | chr1_3:16888608-16888627 | Msa0106990:CDS | 45.0% | |
| !! | ATATTTTGGGAGGAGCGTGA+AGG | + | chr1_3:16888633-16888652 | Msa0106990:CDS | 45.0% |
| !! | ATAGTGCTGGCACATCTCAA+AGG | + | chr1_3:16888874-16888893 | Msa0106990:CDS | 45.0% |
| TGCTTGCAGATGACCCTTTA+AGG | - | chr1_3:16889416-16889435 | None:intergenic | 45.0% | |
| GAACATGCCTATGAAAGTGG+AGG | + | chr1_3:16889449-16889468 | Msa0106990:CDS | 45.0% | |
| AGAACATGCATTGTGACCTC+TGG | + | chr1_3:16889498-16889517 | Msa0106990:CDS | 45.0% | |
| !! | GAGGCATTGAAGGAAGTTCA+AGG | + | chr1_3:16889786-16889805 | Msa0106990:CDS | 45.0% |
| GTTTCAGCAGACTTAGAAGG+TGG | + | chr1_3:16890185-16890204 | Msa0106990:intron | 45.0% | |
| TTCGTGCAGTTCACAAATGG+GGG | + | chr1_3:16890392-16890411 | Msa0106990:CDS | 45.0% | |
| CTTGTAGGTTCTATGCAGGT+TGG | + | chr1_3:16890459-16890478 | Msa0106990:CDS | 45.0% | |
| ! | AGGAGCGTGAAGGTGATGTT+TGG | + | chr1_3:16888643-16888662 | Msa0106990:CDS | 50.0% |
| CATGCATTGTGACCTCTGGT+TGG | + | chr1_3:16889502-16889521 | Msa0106990:CDS | 50.0% | |
| TCGTGTGAACTCTACCTACC+CGG | + | chr1_3:16890238-16890257 | Msa0106990:CDS | 50.0% | |
| ! | AGGAGCGTGAAGGTGATGTT+TGG | + | chr1_3:16888643-16888662 | Msa0106990:CDS | 50.0% |
| CATGCATTGTGACCTCTGGT+TGG | + | chr1_3:16889502-16889521 | Msa0106990:CDS | 50.0% | |
| TCGTGTGAACTCTACCTACC+CGG | + | chr1_3:16890238-16890257 | Msa0106990:CDS | 50.0% | |
| GGCAAATGGCTTCCAACCAG+AGG | - | chr1_3:16889517-16889536 | None:intergenic | 55.0% | |
| GTGAACTCTACCTACCCGGT+AGG | + | chr1_3:16890242-16890261 | Msa0106990:intron | 55.0% | |
| GGCAAATGGCTTCCAACCAG+AGG | - | chr1_3:16889517-16889536 | None:intergenic | 55.0% | |
| GTGAACTCTACCTACCCGGT+AGG | + | chr1_3:16890242-16890261 | Msa0106990:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 16888251 | 16890595 | 16888251 | ID=Msa0106990;Name=Msa0106990 |
| chr1_3 | mRNA | 16888251 | 16890595 | 16888251 | ID=Msa0106990-mRNA-1;Parent=Msa0106990;Name=Msa0106990-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|0.57|0.62|8|0|406 |
| chr1_3 | exon | 16888251 | 16888319 | 16888251 | ID=Msa0106990-mRNA-1:exon:6378;Parent=Msa0106990-mRNA-1 |
| chr1_3 | exon | 16888546 | 16888719 | 16888546 | ID=Msa0106990-mRNA-1:exon:6379;Parent=Msa0106990-mRNA-1 |
| chr1_3 | exon | 16888753 | 16888939 | 16888753 | ID=Msa0106990-mRNA-1:exon:6380;Parent=Msa0106990-mRNA-1 |
| chr1_3 | exon | 16889052 | 16889176 | 16889052 | ID=Msa0106990-mRNA-1:exon:6381;Parent=Msa0106990-mRNA-1 |
| chr1_3 | exon | 16889372 | 16889630 | 16889372 | ID=Msa0106990-mRNA-1:exon:6382;Parent=Msa0106990-mRNA-1 |
| chr1_3 | exon | 16889741 | 16889827 | 16889741 | ID=Msa0106990-mRNA-1:exon:6383;Parent=Msa0106990-mRNA-1 |
| chr1_3 | exon | 16890192 | 16890259 | 16890192 | ID=Msa0106990-mRNA-1:exon:6384;Parent=Msa0106990-mRNA-1 |
| chr1_3 | exon | 16890344 | 16890595 | 16890344 | ID=Msa0106990-mRNA-1:exon:6385;Parent=Msa0106990-mRNA-1 |
| chr1_3 | CDS | 16888251 | 16888319 | 16888251 | ID=Msa0106990-mRNA-1:cds;Parent=Msa0106990-mRNA-1 |
| chr1_3 | CDS | 16888546 | 16888719 | 16888546 | ID=Msa0106990-mRNA-1:cds;Parent=Msa0106990-mRNA-1 |
| chr1_3 | CDS | 16888753 | 16888939 | 16888753 | ID=Msa0106990-mRNA-1:cds;Parent=Msa0106990-mRNA-1 |
| chr1_3 | CDS | 16889052 | 16889176 | 16889052 | ID=Msa0106990-mRNA-1:cds;Parent=Msa0106990-mRNA-1 |
| chr1_3 | CDS | 16889372 | 16889630 | 16889372 | ID=Msa0106990-mRNA-1:cds;Parent=Msa0106990-mRNA-1 |
| chr1_3 | CDS | 16889741 | 16889827 | 16889741 | ID=Msa0106990-mRNA-1:cds;Parent=Msa0106990-mRNA-1 |
| chr1_3 | CDS | 16890192 | 16890259 | 16890192 | ID=Msa0106990-mRNA-1:cds;Parent=Msa0106990-mRNA-1 |
| chr1_3 | CDS | 16890344 | 16890595 | 16890344 | ID=Msa0106990-mRNA-1:cds;Parent=Msa0106990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
