Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107000 | sp|Q84R27|Y3896_ARATH | 35.135 | 111 | 66 | 2 | 5 | 110 | 20 | 129 | 6.61e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107000 | A0A396JU70 | 77.778 | 360 | 32 | 4 | 1 | 317 | 1 | 355 | 6.89e-176 | 500 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0107000 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107000 | MtrunA17_Chr1g0163221 | 77.778 | 360 | 32 | 4 | 1 | 317 | 1 | 355 | 1.33e-179 | 500 |
| Msa0107000 | MtrunA17_Chr4g0067431 | 61.218 | 312 | 92 | 7 | 1 | 287 | 1 | 308 | 1.25e-122 | 354 |
| Msa0107000 | MtrunA17_Chr6g0467351 | 56.723 | 238 | 77 | 4 | 1 | 219 | 1 | 231 | 5.19e-86 | 258 |
| Msa0107000 | MtrunA17_Chr1g0163061 | 48.679 | 265 | 71 | 4 | 1 | 200 | 1 | 265 | 2.44e-60 | 194 |
| Msa0107000 | MtrunA17_Chr1g0163131 | 29.605 | 304 | 170 | 12 | 9 | 283 | 12 | 300 | 2.07e-28 | 111 |
| Msa0107000 | MtrunA17_Chr1g0163231 | 29.193 | 322 | 171 | 11 | 15 | 314 | 9 | 295 | 1.68e-26 | 106 |
| Msa0107000 | MtrunA17_Chr3g0131891 | 27.500 | 280 | 188 | 7 | 9 | 276 | 13 | 289 | 2.38e-25 | 103 |
| Msa0107000 | MtrunA17_Chr1g0163181 | 28.956 | 297 | 167 | 12 | 19 | 287 | 9 | 289 | 2.55e-25 | 105 |
| Msa0107000 | MtrunA17_Chr6g0467361 | 65.823 | 79 | 23 | 3 | 213 | 288 | 7 | 84 | 7.17e-25 | 96.3 |
| Msa0107000 | MtrunA17_Chr1g0163251 | 29.412 | 289 | 179 | 11 | 24 | 300 | 14 | 289 | 2.01e-24 | 102 |
| Msa0107000 | MtrunA17_Chr1g0163261 | 28.873 | 284 | 178 | 10 | 15 | 287 | 9 | 279 | 4.68e-24 | 99.8 |
| Msa0107000 | MtrunA17_Chr7g0233561 | 27.946 | 297 | 167 | 10 | 13 | 276 | 16 | 298 | 7.42e-24 | 99.8 |
| Msa0107000 | MtrunA17_Chr3g0103181 | 28.767 | 292 | 166 | 12 | 13 | 287 | 10 | 276 | 4.51e-23 | 96.7 |
| Msa0107000 | MtrunA17_Chr1g0208771 | 25.651 | 269 | 168 | 8 | 31 | 274 | 13 | 274 | 5.96e-23 | 98.6 |
| Msa0107000 | MtrunA17_Chr1g0163071 | 27.682 | 289 | 157 | 9 | 31 | 280 | 2 | 277 | 3.59e-22 | 94.7 |
| Msa0107000 | MtrunA17_Chr7g0233541 | 28.195 | 266 | 170 | 6 | 31 | 276 | 2 | 266 | 3.89e-22 | 94.4 |
| Msa0107000 | MtrunA17_Chr1g0163201 | 28.114 | 281 | 168 | 10 | 31 | 284 | 19 | 292 | 9.30e-22 | 94.7 |
| Msa0107000 | MtrunA17_Chr8g0390841 | 25.874 | 286 | 181 | 10 | 13 | 274 | 37 | 315 | 3.86e-21 | 93.6 |
| Msa0107000 | MtrunA17_Chr7g0233521 | 28.244 | 262 | 158 | 8 | 31 | 276 | 2 | 249 | 7.99e-21 | 90.5 |
| Msa0107000 | MtrunA17_Chr3g0103171 | 28.413 | 271 | 166 | 9 | 31 | 287 | 6 | 262 | 9.22e-21 | 89.7 |
| Msa0107000 | MtrunA17_Chr3g0103191 | 27.459 | 244 | 149 | 9 | 13 | 245 | 10 | 236 | 7.31e-20 | 87.0 |
| Msa0107000 | MtrunA17_Chr1g0171611 | 24.815 | 270 | 174 | 7 | 15 | 278 | 9 | 255 | 2.64e-19 | 86.3 |
| Msa0107000 | MtrunA17_Chr1g0163101 | 31.579 | 152 | 82 | 5 | 1 | 134 | 1 | 148 | 6.41e-18 | 80.1 |
| Msa0107000 | MtrunA17_Chr7g0233531 | 26.923 | 260 | 164 | 7 | 31 | 276 | 2 | 249 | 1.15e-17 | 81.6 |
| Msa0107000 | MtrunA17_Chr7g0233571 | 33.571 | 140 | 82 | 3 | 13 | 142 | 8 | 146 | 4.59e-17 | 78.6 |
| Msa0107000 | MtrunA17_Chr1g0154161 | 25.965 | 285 | 173 | 12 | 13 | 276 | 28 | 295 | 6.37e-17 | 80.1 |
| Msa0107000 | MtrunA17_Chr3g0103151 | 32.026 | 153 | 88 | 6 | 13 | 152 | 10 | 159 | 1.28e-16 | 75.9 |
| Msa0107000 | MtrunA17_Chr5g0419201 | 38.318 | 107 | 64 | 2 | 1 | 106 | 1 | 106 | 5.87e-16 | 75.1 |
| Msa0107000 | MtrunA17_Chr5g0429931 | 25.899 | 278 | 155 | 10 | 31 | 297 | 11 | 248 | 4.49e-15 | 73.6 |
| Msa0107000 | MtrunA17_Chr1g0154131 | 26.042 | 288 | 176 | 10 | 13 | 276 | 182 | 456 | 1.52e-14 | 73.9 |
| Msa0107000 | MtrunA17_Chr6g0476181 | 36.667 | 120 | 63 | 5 | 31 | 142 | 2 | 116 | 1.55e-14 | 70.5 |
| Msa0107000 | MtrunA17_Chr1g0163121 | 35.246 | 122 | 60 | 5 | 29 | 135 | 9 | 126 | 2.30e-14 | 69.3 |
| Msa0107000 | MtrunA17_Chr3g0077411 | 24.221 | 289 | 138 | 10 | 14 | 287 | 24 | 246 | 1.98e-13 | 70.9 |
| Msa0107000 | MtrunA17_Chr3g0077411 | 24.199 | 281 | 159 | 11 | 13 | 276 | 260 | 503 | 4.66e-12 | 66.6 |
| Msa0107000 | MtrunA17_Chr1g0163081 | 37.500 | 96 | 51 | 3 | 31 | 121 | 6 | 97 | 5.51e-13 | 65.5 |
| Msa0107000 | MtrunA17_Chr3g0077451 | 26.277 | 274 | 127 | 12 | 29 | 283 | 10 | 227 | 7.03e-13 | 67.4 |
| Msa0107000 | MtrunA17_Chr3g0077461 | 31.343 | 134 | 80 | 3 | 14 | 142 | 236 | 362 | 1.40e-12 | 68.2 |
| Msa0107000 | MtrunA17_Chr1g0162161 | 32.800 | 125 | 62 | 5 | 31 | 137 | 4 | 124 | 1.48e-12 | 64.7 |
| Msa0107000 | MtrunA17_Chr1g0163191 | 36.275 | 102 | 57 | 3 | 24 | 120 | 14 | 112 | 5.74e-12 | 63.2 |
| Msa0107000 | MtrunA17_Chr1g0154151 | 26.042 | 288 | 167 | 11 | 30 | 276 | 19 | 301 | 6.63e-12 | 65.5 |
| Msa0107000 | MtrunA17_Chr1g0163241 | 32.231 | 121 | 64 | 4 | 31 | 136 | 23 | 140 | 5.48e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107000 | AT3G18960.1 | 35.135 | 111 | 66 | 2 | 5 | 110 | 20 | 129 | 6.72e-14 | 70.1 |
| Msa0107000 | AT3G18960.2 | 35.135 | 111 | 66 | 2 | 5 | 110 | 20 | 129 | 6.88e-14 | 69.7 |
| Msa0107000 | AT4G33280.1 | 23.466 | 277 | 171 | 5 | 28 | 274 | 36 | 301 | 5.61e-13 | 68.9 |
| Msa0107000 | AT4G01580.1 | 33.333 | 111 | 68 | 2 | 5 | 110 | 20 | 129 | 1.86e-12 | 65.5 |
| Msa0107000 | AT1G49475.1 | 35.135 | 111 | 65 | 3 | 15 | 120 | 34 | 142 | 8.18e-12 | 63.5 |
Find 35 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTATCTTTGTCAACAAAA+AGG | 0.196489 | 1_3:-16925206 | None:intergenic |
| GAAGAGAATAATTTGAAATT+TGG | 0.198679 | 1_3:+16925291 | Msa0107000:CDS |
| CTCTATCAATGTATGACTTT+TGG | 0.220204 | 1_3:-16924814 | None:intergenic |
| TTTGGAAACCTTAGAGTAAC+TGG | 0.256715 | 1_3:-16924231 | None:intergenic |
| AAGTAGTTGTGATGATATTA+AGG | 0.299219 | 1_3:+16924718 | Msa0107000:CDS |
| ACTTCTCAAATACAAGCTTT+TGG | 0.302395 | 1_3:-16925581 | None:intergenic |
| TTCTTACAAACTTCCATAGA+TGG | 0.339692 | 1_3:-16924540 | None:intergenic |
| TAACAAACCCAGTTACTCTA+AGG | 0.363012 | 1_3:+16924223 | Msa0107000:CDS |
| ATTTCAAATTATTCTCTTCA+CGG | 0.368199 | 1_3:-16925287 | None:intergenic |
| GAGAAAATAACAACTTGAAA+TGG | 0.395512 | 1_3:-16925357 | None:intergenic |
| TGTGTCTTAACAAATTCATT+TGG | 0.404885 | 1_3:-16925150 | None:intergenic |
| CTTCCCTAGTTTCTCTTGAC+GGG | 0.422598 | 1_3:-16924437 | None:intergenic |
| CTTCATCATCACGGCGTAGA+AGG | 0.423115 | 1_3:+16924502 | Msa0107000:CDS |
| TGAATTTGTTAAGACACATA+TGG | 0.433535 | 1_3:+16925155 | Msa0107000:CDS |
| TCTTCCCTAGTTTCTCTTGA+CGG | 0.433773 | 1_3:-16924438 | None:intergenic |
| TCTAAGGTTTCCAAACATGA+TGG | 0.492653 | 1_3:+16924239 | Msa0107000:CDS |
| CTTCTACGCCGTGATGATGA+AGG | 0.500716 | 1_3:-16924501 | None:intergenic |
| GGGTTGGCTTGAATTTGTGA+AGG | 0.511802 | 1_3:+16925515 | Msa0107000:intron |
| GGTTGGCTTGAATTTGTGAA+GGG | 0.512460 | 1_3:+16925516 | Msa0107000:CDS |
| AATCTGCACTAACTTGTGGT+TGG | 0.523890 | 1_3:+16925256 | Msa0107000:CDS |
| AATACCCGTCAAGAGAAACT+AGG | 0.533719 | 1_3:+16924433 | Msa0107000:CDS |
| TTTGTGAAAAGGTATTGGAA+AGG | 0.553882 | 1_3:+16924198 | Msa0107000:CDS |
| GAACATGATCATCAGAGTAA+TGG | 0.556374 | 1_3:+16923707 | Msa0107000:CDS |
| TGATACTTGCCTATTGAAGA+TGG | 0.558738 | 1_3:+16925557 | Msa0107000:CDS |
| ATACCCGTCAAGAGAAACTA+GGG | 0.582374 | 1_3:+16924434 | Msa0107000:CDS |
| GTTGGCTTGAATTTGTGAAG+GGG | 0.584037 | 1_3:+16925517 | Msa0107000:CDS |
| TAAGACACATATGGACATGA+TGG | 0.584937 | 1_3:+16925164 | Msa0107000:CDS |
| AAACAATCTGCACTAACTTG+TGG | 0.589005 | 1_3:+16925252 | Msa0107000:CDS |
| ATCATGTTCTTGAGAAGACA+TGG | 0.597525 | 1_3:-16923693 | None:intergenic |
| TTCTACGCCGTGATGATGAA+GGG | 0.599752 | 1_3:-16924500 | None:intergenic |
| TTGGAAACCTTAGAGTAACT+GGG | 0.606122 | 1_3:-16924230 | None:intergenic |
| ATACATTGATAGAGATCACT+TGG | 0.608769 | 1_3:+16924823 | Msa0107000:CDS |
| TTGAGAACCCTTCATCATCA+CGG | 0.623310 | 1_3:+16924493 | Msa0107000:CDS |
| ACACATATGGACATGATGGA+AGG | 0.627742 | 1_3:+16925168 | Msa0107000:CDS |
| AAGCGTGAGCATGTGAACAA+TGG | 0.705898 | 1_3:+16924597 | Msa0107000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGATTTATGAAAAATTTA+TGG | + | chr1_3:16925437-16925456 | Msa0107000:intron | 10.0% |
| !! | TATGATTTATGAAAAATTTA+TGG | + | chr1_3:16925437-16925456 | Msa0107000:intron | 10.0% |
| !!! | TTTTTGCTACTAATTTTTTT+TGG | + | chr1_3:16924672-16924691 | Msa0107000:intron | 15.0% |
| !! | ATATAATTACCTTCAAAATA+AGG | - | chr1_3:16925405-16925424 | None:intergenic | 15.0% |
| !!! | TTTTTGCTACTAATTTTTTT+TGG | + | chr1_3:16924672-16924691 | Msa0107000:intron | 15.0% |
| !! | ATATAATTACCTTCAAAATA+AGG | - | chr1_3:16925405-16925424 | None:intergenic | 15.0% |
| !! | AAAATGTGATCTTATGATAT+TGG | + | chr1_3:16923973-16923992 | Msa0107000:intron | 20.0% |
| !! | AATAGTGATTGTTCAAATAT+AGG | + | chr1_3:16924017-16924036 | Msa0107000:intron | 20.0% |
| !!! | AATGAAGTTATATTTTGCAA+TGG | + | chr1_3:16924294-16924313 | Msa0107000:CDS | 20.0% |
| !!! | TTTGAATGAATCACAATTTT+TGG | + | chr1_3:16924344-16924363 | Msa0107000:CDS | 20.0% |
| !!! | GTTTTTAATGTGATTGTATT+CGG | + | chr1_3:16924390-16924409 | Msa0107000:CDS | 20.0% |
| !! | CCAATTATGGTATAATAATT+TGG | - | chr1_3:16924951-16924970 | None:intergenic | 20.0% |
| !! | CCAAATTATTATACCATAAT+TGG | + | chr1_3:16924948-16924967 | Msa0107000:intron | 20.0% |
| !!! | CTTTAAAAATACCTACATAA+TGG | + | chr1_3:16924998-16925017 | Msa0107000:intron | 20.0% |
| !! | AACTATATGTGTGTATTTAT+AGG | + | chr1_3:16925122-16925141 | Msa0107000:intron | 20.0% |
| !! | TTTATCTTTGTCAACAAAAA+GGG | - | chr1_3:16925208-16925227 | None:intergenic | 20.0% |
| !! | ATTTATCTTTGTCAACAAAA+AGG | - | chr1_3:16925209-16925228 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGACAAAGATAAA+TGG | + | chr1_3:16925208-16925227 | Msa0107000:CDS | 20.0% |
| !! | ATTTCAAATTATTCTCTTCA+CGG | - | chr1_3:16925290-16925309 | None:intergenic | 20.0% |
| !!! | GAAGAGAATAATTTGAAATT+TGG | + | chr1_3:16925291-16925310 | Msa0107000:CDS | 20.0% |
| !! | AAAATGTGATCTTATGATAT+TGG | + | chr1_3:16923973-16923992 | Msa0107000:intron | 20.0% |
| !! | AATAGTGATTGTTCAAATAT+AGG | + | chr1_3:16924017-16924036 | Msa0107000:intron | 20.0% |
| !!! | AATGAAGTTATATTTTGCAA+TGG | + | chr1_3:16924294-16924313 | Msa0107000:CDS | 20.0% |
| !!! | TTTGAATGAATCACAATTTT+TGG | + | chr1_3:16924344-16924363 | Msa0107000:CDS | 20.0% |
| !!! | GTTTTTAATGTGATTGTATT+CGG | + | chr1_3:16924390-16924409 | Msa0107000:CDS | 20.0% |
| !! | CCAATTATGGTATAATAATT+TGG | - | chr1_3:16924951-16924970 | None:intergenic | 20.0% |
| !! | CCAAATTATTATACCATAAT+TGG | + | chr1_3:16924948-16924967 | Msa0107000:intron | 20.0% |
| !!! | CTTTAAAAATACCTACATAA+TGG | + | chr1_3:16924998-16925017 | Msa0107000:intron | 20.0% |
| !! | AACTATATGTGTGTATTTAT+AGG | + | chr1_3:16925122-16925141 | Msa0107000:intron | 20.0% |
| !! | TTTATCTTTGTCAACAAAAA+GGG | - | chr1_3:16925208-16925227 | None:intergenic | 20.0% |
| !! | ATTTATCTTTGTCAACAAAA+AGG | - | chr1_3:16925209-16925228 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGACAAAGATAAA+TGG | + | chr1_3:16925208-16925227 | Msa0107000:CDS | 20.0% |
| !! | ATTTCAAATTATTCTCTTCA+CGG | - | chr1_3:16925290-16925309 | None:intergenic | 20.0% |
| !!! | GAAGAGAATAATTTGAAATT+TGG | + | chr1_3:16925291-16925310 | Msa0107000:CDS | 20.0% |
| ! | TGCATATTGTGAAAAATCAA+GGG | - | chr1_3:16923807-16923826 | None:intergenic | 25.0% |
| ! | TTGCATATTGTGAAAAATCA+AGG | - | chr1_3:16923808-16923827 | None:intergenic | 25.0% |
| ! | GAAAAACAATTCCTTCATTA+GGG | - | chr1_3:16923924-16923943 | None:intergenic | 25.0% |
| ! | AGAAAAACAATTCCTTCATT+AGG | - | chr1_3:16923925-16923944 | None:intergenic | 25.0% |
| !! | TACCTTTTCACAAAAGTTAT+GGG | - | chr1_3:16924192-16924211 | None:intergenic | 25.0% |
| !! | ATACCTTTTCACAAAAGTTA+TGG | - | chr1_3:16924193-16924212 | None:intergenic | 25.0% |
| !!! | TAACTTTTGTGAAAAGGTAT+TGG | + | chr1_3:16924193-16924212 | Msa0107000:CDS | 25.0% |
| !!! | TGATGGAAAAGAAAGTTTTT+TGG | + | chr1_3:16924256-16924275 | Msa0107000:CDS | 25.0% |
| !!! | GATGGAAAAGAAAGTTTTTT+GGG | + | chr1_3:16924257-16924276 | Msa0107000:CDS | 25.0% |
| !! | AAGTTATATTTTGCAATGGT+TGG | + | chr1_3:16924298-16924317 | Msa0107000:CDS | 25.0% |
| !!! | TGAATTCTTACTTTTTTAGC+AGG | + | chr1_3:16924695-16924714 | Msa0107000:intron | 25.0% |
| ! | AAGTAGTTGTGATGATATTA+AGG | + | chr1_3:16924718-16924737 | Msa0107000:CDS | 25.0% |
| ! | AATATAGCAAAGTCCAATTA+TGG | - | chr1_3:16924964-16924983 | None:intergenic | 25.0% |
| ! | TGTGTCTTAACAAATTCATT+TGG | - | chr1_3:16925153-16925172 | None:intergenic | 25.0% |
| !!! | TGAATTTGTTAAGACACATA+TGG | + | chr1_3:16925155-16925174 | Msa0107000:CDS | 25.0% |
| ! | GAGAAAATAACAACTTGAAA+TGG | - | chr1_3:16925360-16925379 | None:intergenic | 25.0% |
| !!! | TCAAGTTGTTATTTTCTCTT+TGG | + | chr1_3:16925362-16925381 | Msa0107000:intron | 25.0% |
| !!! | TGTTATTTTCTCTTTGGAAA+AGG | + | chr1_3:16925368-16925387 | Msa0107000:intron | 25.0% |
| ! | CAATATAGTAATTCATGTGT+TGG | + | chr1_3:16925481-16925500 | Msa0107000:intron | 25.0% |
| ! | TGCATATTGTGAAAAATCAA+GGG | - | chr1_3:16923807-16923826 | None:intergenic | 25.0% |
| ! | TTGCATATTGTGAAAAATCA+AGG | - | chr1_3:16923808-16923827 | None:intergenic | 25.0% |
| ! | GAAAAACAATTCCTTCATTA+GGG | - | chr1_3:16923924-16923943 | None:intergenic | 25.0% |
| ! | AGAAAAACAATTCCTTCATT+AGG | - | chr1_3:16923925-16923944 | None:intergenic | 25.0% |
| !! | TACCTTTTCACAAAAGTTAT+GGG | - | chr1_3:16924192-16924211 | None:intergenic | 25.0% |
| !! | ATACCTTTTCACAAAAGTTA+TGG | - | chr1_3:16924193-16924212 | None:intergenic | 25.0% |
| !!! | TAACTTTTGTGAAAAGGTAT+TGG | + | chr1_3:16924193-16924212 | Msa0107000:CDS | 25.0% |
| !!! | TGATGGAAAAGAAAGTTTTT+TGG | + | chr1_3:16924256-16924275 | Msa0107000:CDS | 25.0% |
| !!! | GATGGAAAAGAAAGTTTTTT+GGG | + | chr1_3:16924257-16924276 | Msa0107000:CDS | 25.0% |
| !! | AAGTTATATTTTGCAATGGT+TGG | + | chr1_3:16924298-16924317 | Msa0107000:CDS | 25.0% |
| !!! | TGAATTCTTACTTTTTTAGC+AGG | + | chr1_3:16924695-16924714 | Msa0107000:intron | 25.0% |
| ! | AAGTAGTTGTGATGATATTA+AGG | + | chr1_3:16924718-16924737 | Msa0107000:CDS | 25.0% |
| ! | AATATAGCAAAGTCCAATTA+TGG | - | chr1_3:16924964-16924983 | None:intergenic | 25.0% |
| ! | TGTGTCTTAACAAATTCATT+TGG | - | chr1_3:16925153-16925172 | None:intergenic | 25.0% |
| !!! | TGAATTTGTTAAGACACATA+TGG | + | chr1_3:16925155-16925174 | Msa0107000:CDS | 25.0% |
| ! | GAGAAAATAACAACTTGAAA+TGG | - | chr1_3:16925360-16925379 | None:intergenic | 25.0% |
| !!! | TCAAGTTGTTATTTTCTCTT+TGG | + | chr1_3:16925362-16925381 | Msa0107000:intron | 25.0% |
| !!! | TGTTATTTTCTCTTTGGAAA+AGG | + | chr1_3:16925368-16925387 | Msa0107000:intron | 25.0% |
| ! | CAATATAGTAATTCATGTGT+TGG | + | chr1_3:16925481-16925500 | Msa0107000:intron | 25.0% |
| !!! | TAATGGTGTCCACTTTTTTA+AGG | + | chr1_3:16923724-16923743 | Msa0107000:CDS | 30.0% |
| GACGAATAACCTTAAAAAAG+TGG | - | chr1_3:16923736-16923755 | None:intergenic | 30.0% | |
| ! | TACCAGTTTTTCTTCTTGAA+GGG | - | chr1_3:16923765-16923784 | None:intergenic | 30.0% |
| ! | TTACCAGTTTTTCTTCTTGA+AGG | - | chr1_3:16923766-16923785 | None:intergenic | 30.0% |
| CAAATATGCACTGCAAAATT+TGG | + | chr1_3:16923825-16923844 | Msa0107000:intron | 30.0% | |
| AGTGATTGTTCAAATATAGG+TGG | + | chr1_3:16924020-16924039 | Msa0107000:intron | 30.0% | |
| !! | TTTGTGAAAAGGTATTGGAA+AGG | + | chr1_3:16924198-16924217 | Msa0107000:CDS | 30.0% |
| ! | ACTTTCTTTTCCATCATGTT+TGG | - | chr1_3:16924252-16924271 | None:intergenic | 30.0% |
| ! | AAAATTTTCAGCACCATCTA+TGG | + | chr1_3:16924527-16924546 | Msa0107000:CDS | 30.0% |
| TTCTTACAAACTTCCATAGA+TGG | - | chr1_3:16924543-16924562 | None:intergenic | 30.0% | |
| !!! | CGAATTTTTTCTTCACTTTC+TGG | - | chr1_3:16924763-16924782 | None:intergenic | 30.0% |
| GAAAAAATTCGACTCTGATA+AGG | + | chr1_3:16924772-16924791 | Msa0107000:CDS | 30.0% | |
| ! | CTCTATCAATGTATGACTTT+TGG | - | chr1_3:16924817-16924836 | None:intergenic | 30.0% |
| ATACATTGATAGAGATCACT+TGG | + | chr1_3:16924823-16924842 | Msa0107000:CDS | 30.0% | |
| !! | TGTGTTTTTGTGCTAAACAA+AGG | + | chr1_3:16925321-16925340 | Msa0107000:CDS | 30.0% |
| !!! | TTGGAAACTCCTTATTTTGA+AGG | + | chr1_3:16925393-16925412 | Msa0107000:intron | 30.0% |
| ! | ACTTCTCAAATACAAGCTTT+TGG | - | chr1_3:16925584-16925603 | None:intergenic | 30.0% |
| !!! | TAATGGTGTCCACTTTTTTA+AGG | + | chr1_3:16923724-16923743 | Msa0107000:CDS | 30.0% |
| GACGAATAACCTTAAAAAAG+TGG | - | chr1_3:16923736-16923755 | None:intergenic | 30.0% | |
| ! | TACCAGTTTTTCTTCTTGAA+GGG | - | chr1_3:16923765-16923784 | None:intergenic | 30.0% |
| ! | TTACCAGTTTTTCTTCTTGA+AGG | - | chr1_3:16923766-16923785 | None:intergenic | 30.0% |
| CAAATATGCACTGCAAAATT+TGG | + | chr1_3:16923825-16923844 | Msa0107000:intron | 30.0% | |
| AGTGATTGTTCAAATATAGG+TGG | + | chr1_3:16924020-16924039 | Msa0107000:intron | 30.0% | |
| !! | TTTGTGAAAAGGTATTGGAA+AGG | + | chr1_3:16924198-16924217 | Msa0107000:CDS | 30.0% |
| ! | ACTTTCTTTTCCATCATGTT+TGG | - | chr1_3:16924252-16924271 | None:intergenic | 30.0% |
| ! | AAAATTTTCAGCACCATCTA+TGG | + | chr1_3:16924527-16924546 | Msa0107000:CDS | 30.0% |
| TTCTTACAAACTTCCATAGA+TGG | - | chr1_3:16924543-16924562 | None:intergenic | 30.0% | |
| !!! | CGAATTTTTTCTTCACTTTC+TGG | - | chr1_3:16924763-16924782 | None:intergenic | 30.0% |
| GAAAAAATTCGACTCTGATA+AGG | + | chr1_3:16924772-16924791 | Msa0107000:CDS | 30.0% | |
| ! | CTCTATCAATGTATGACTTT+TGG | - | chr1_3:16924817-16924836 | None:intergenic | 30.0% |
| ATACATTGATAGAGATCACT+TGG | + | chr1_3:16924823-16924842 | Msa0107000:CDS | 30.0% | |
| !! | TGTGTTTTTGTGCTAAACAA+AGG | + | chr1_3:16925321-16925340 | Msa0107000:CDS | 30.0% |
| !!! | TTGGAAACTCCTTATTTTGA+AGG | + | chr1_3:16925393-16925412 | Msa0107000:intron | 30.0% |
| ! | ACTTCTCAAATACAAGCTTT+TGG | - | chr1_3:16925584-16925603 | None:intergenic | 30.0% |
| GAACATGATCATCAGAGTAA+TGG | + | chr1_3:16923707-16923726 | Msa0107000:CDS | 35.0% | |
| TACCCTTCAAGAAGAAAAAC+TGG | + | chr1_3:16923760-16923779 | Msa0107000:CDS | 35.0% | |
| ! | TGCCCATAACTTTTGTGAAA+AGG | + | chr1_3:16924187-16924206 | Msa0107000:CDS | 35.0% |
| TAACAAACCCAGTTACTCTA+AGG | + | chr1_3:16924223-16924242 | Msa0107000:CDS | 35.0% | |
| TTGGAAACCTTAGAGTAACT+GGG | - | chr1_3:16924233-16924252 | None:intergenic | 35.0% | |
| TTTGGAAACCTTAGAGTAAC+TGG | - | chr1_3:16924234-16924253 | None:intergenic | 35.0% | |
| ! | TCTAAGGTTTCCAAACATGA+TGG | + | chr1_3:16924239-16924258 | Msa0107000:CDS | 35.0% |
| CCAATCACAATCCATTATGT+AGG | - | chr1_3:16925012-16925031 | None:intergenic | 35.0% | |
| !! | CCTACATAATGGATTGTGAT+TGG | + | chr1_3:16925009-16925028 | Msa0107000:intron | 35.0% |
| TAAGACACATATGGACATGA+TGG | + | chr1_3:16925164-16925183 | Msa0107000:CDS | 35.0% | |
| AAACAATCTGCACTAACTTG+TGG | + | chr1_3:16925252-16925271 | Msa0107000:CDS | 35.0% | |
| ! | TTTCTCTTTGGAAAAGGACT+TGG | + | chr1_3:16925374-16925393 | Msa0107000:intron | 35.0% |
| TGATACTTGCCTATTGAAGA+TGG | + | chr1_3:16925557-16925576 | Msa0107000:CDS | 35.0% | |
| GAACATGATCATCAGAGTAA+TGG | + | chr1_3:16923707-16923726 | Msa0107000:CDS | 35.0% | |
| TACCCTTCAAGAAGAAAAAC+TGG | + | chr1_3:16923760-16923779 | Msa0107000:CDS | 35.0% | |
| ! | TGCCCATAACTTTTGTGAAA+AGG | + | chr1_3:16924187-16924206 | Msa0107000:CDS | 35.0% |
| TAACAAACCCAGTTACTCTA+AGG | + | chr1_3:16924223-16924242 | Msa0107000:CDS | 35.0% | |
| TTGGAAACCTTAGAGTAACT+GGG | - | chr1_3:16924233-16924252 | None:intergenic | 35.0% | |
| TTTGGAAACCTTAGAGTAAC+TGG | - | chr1_3:16924234-16924253 | None:intergenic | 35.0% | |
| ! | TCTAAGGTTTCCAAACATGA+TGG | + | chr1_3:16924239-16924258 | Msa0107000:CDS | 35.0% |
| CCAATCACAATCCATTATGT+AGG | - | chr1_3:16925012-16925031 | None:intergenic | 35.0% | |
| !! | CCTACATAATGGATTGTGAT+TGG | + | chr1_3:16925009-16925028 | Msa0107000:intron | 35.0% |
| TAAGACACATATGGACATGA+TGG | + | chr1_3:16925164-16925183 | Msa0107000:CDS | 35.0% | |
| AAACAATCTGCACTAACTTG+TGG | + | chr1_3:16925252-16925271 | Msa0107000:CDS | 35.0% | |
| ! | TTTCTCTTTGGAAAAGGACT+TGG | + | chr1_3:16925374-16925393 | Msa0107000:intron | 35.0% |
| TGATACTTGCCTATTGAAGA+TGG | + | chr1_3:16925557-16925576 | Msa0107000:CDS | 35.0% | |
| ! | TAATCATCCCTAGCCTTTGT+TGG | + | chr1_3:16923892-16923911 | Msa0107000:intron | 40.0% |
| ATTAGGGTTGCATCCAACAA+AGG | - | chr1_3:16923908-16923927 | None:intergenic | 40.0% | |
| GTGATTGTATTCGGTAGATG+CGG | + | chr1_3:16924399-16924418 | Msa0107000:intron | 40.0% | |
| AATACCCGTCAAGAGAAACT+AGG | + | chr1_3:16924433-16924452 | Msa0107000:CDS | 40.0% | |
| ATACCCGTCAAGAGAAACTA+GGG | + | chr1_3:16924434-16924453 | Msa0107000:CDS | 40.0% | |
| TCTTCCCTAGTTTCTCTTGA+CGG | - | chr1_3:16924441-16924460 | None:intergenic | 40.0% | |
| TTGAGAACCCTTCATCATCA+CGG | + | chr1_3:16924493-16924512 | Msa0107000:CDS | 40.0% | |
| ! | ACACATATGGACATGATGGA+AGG | + | chr1_3:16925168-16925187 | Msa0107000:CDS | 40.0% |
| ! | AATCTGCACTAACTTGTGGT+TGG | + | chr1_3:16925256-16925275 | Msa0107000:CDS | 40.0% |
| !! | GGTTGGCTTGAATTTGTGAA+GGG | + | chr1_3:16925516-16925535 | Msa0107000:CDS | 40.0% |
| !! | GTTGGCTTGAATTTGTGAAG+GGG | + | chr1_3:16925517-16925536 | Msa0107000:CDS | 40.0% |
| ! | GCTTTTGGACCATCTTCAAT+AGG | - | chr1_3:16925569-16925588 | None:intergenic | 40.0% |
| ! | TAATCATCCCTAGCCTTTGT+TGG | + | chr1_3:16923892-16923911 | Msa0107000:intron | 40.0% |
| ATTAGGGTTGCATCCAACAA+AGG | - | chr1_3:16923908-16923927 | None:intergenic | 40.0% | |
| GTGATTGTATTCGGTAGATG+CGG | + | chr1_3:16924399-16924418 | Msa0107000:intron | 40.0% | |
| AATACCCGTCAAGAGAAACT+AGG | + | chr1_3:16924433-16924452 | Msa0107000:CDS | 40.0% | |
| ATACCCGTCAAGAGAAACTA+GGG | + | chr1_3:16924434-16924453 | Msa0107000:CDS | 40.0% | |
| TCTTCCCTAGTTTCTCTTGA+CGG | - | chr1_3:16924441-16924460 | None:intergenic | 40.0% | |
| TTGAGAACCCTTCATCATCA+CGG | + | chr1_3:16924493-16924512 | Msa0107000:CDS | 40.0% | |
| ! | ACACATATGGACATGATGGA+AGG | + | chr1_3:16925168-16925187 | Msa0107000:CDS | 40.0% |
| ! | AATCTGCACTAACTTGTGGT+TGG | + | chr1_3:16925256-16925275 | Msa0107000:CDS | 40.0% |
| !! | GGTTGGCTTGAATTTGTGAA+GGG | + | chr1_3:16925516-16925535 | Msa0107000:CDS | 40.0% |
| !! | GTTGGCTTGAATTTGTGAAG+GGG | + | chr1_3:16925517-16925536 | Msa0107000:CDS | 40.0% |
| ! | GCTTTTGGACCATCTTCAAT+AGG | - | chr1_3:16925569-16925588 | None:intergenic | 40.0% |
| GTTGCATCCAACAAAGGCTA+GGG | - | chr1_3:16923902-16923921 | None:intergenic | 45.0% | |
| GTTGGATGCAACCCTAATGA+AGG | + | chr1_3:16923910-16923929 | Msa0107000:intron | 45.0% | |
| CTTCCCTAGTTTCTCTTGAC+GGG | - | chr1_3:16924440-16924459 | None:intergenic | 45.0% | |
| ! | TTCTACGCCGTGATGATGAA+GGG | - | chr1_3:16924503-16924522 | None:intergenic | 45.0% |
| AAGCGTGAGCATGTGAACAA+TGG | + | chr1_3:16924597-16924616 | Msa0107000:CDS | 45.0% | |
| GTGAGCATGTGAACAATGGT+TGG | + | chr1_3:16924601-16924620 | Msa0107000:intron | 45.0% | |
| ATGTGTTGGACTATTGCGCA+GGG | + | chr1_3:16925495-16925514 | Msa0107000:intron | 45.0% | |
| !! | GGGTTGGCTTGAATTTGTGA+AGG | + | chr1_3:16925515-16925534 | Msa0107000:intron | 45.0% |
| GTTGCATCCAACAAAGGCTA+GGG | - | chr1_3:16923902-16923921 | None:intergenic | 45.0% | |
| GTTGGATGCAACCCTAATGA+AGG | + | chr1_3:16923910-16923929 | Msa0107000:intron | 45.0% | |
| CTTCCCTAGTTTCTCTTGAC+GGG | - | chr1_3:16924440-16924459 | None:intergenic | 45.0% | |
| ! | TTCTACGCCGTGATGATGAA+GGG | - | chr1_3:16924503-16924522 | None:intergenic | 45.0% |
| AAGCGTGAGCATGTGAACAA+TGG | + | chr1_3:16924597-16924616 | Msa0107000:CDS | 45.0% | |
| GTGAGCATGTGAACAATGGT+TGG | + | chr1_3:16924601-16924620 | Msa0107000:intron | 45.0% | |
| ATGTGTTGGACTATTGCGCA+GGG | + | chr1_3:16925495-16925514 | Msa0107000:intron | 45.0% | |
| !! | GGGTTGGCTTGAATTTGTGA+AGG | + | chr1_3:16925515-16925534 | Msa0107000:intron | 45.0% |
| GGTTGCATCCAACAAAGGCT+AGG | - | chr1_3:16923903-16923922 | None:intergenic | 50.0% | |
| ! | CTTCTACGCCGTGATGATGA+AGG | - | chr1_3:16924504-16924523 | None:intergenic | 50.0% |
| CTTCATCATCACGGCGTAGA+AGG | + | chr1_3:16924502-16924521 | Msa0107000:CDS | 50.0% | |
| CATGTGTTGGACTATTGCGC+AGG | + | chr1_3:16925494-16925513 | Msa0107000:intron | 50.0% | |
| GGTTGCATCCAACAAAGGCT+AGG | - | chr1_3:16923903-16923922 | None:intergenic | 50.0% | |
| ! | CTTCTACGCCGTGATGATGA+AGG | - | chr1_3:16924504-16924523 | None:intergenic | 50.0% |
| CTTCATCATCACGGCGTAGA+AGG | + | chr1_3:16924502-16924521 | Msa0107000:CDS | 50.0% | |
| CATGTGTTGGACTATTGCGC+AGG | + | chr1_3:16925494-16925513 | Msa0107000:intron | 50.0% | |
| GTTGGACTATTGCGCAGGGT+TGG | + | chr1_3:16925499-16925518 | Msa0107000:intron | 55.0% | |
| GTTGGACTATTGCGCAGGGT+TGG | + | chr1_3:16925499-16925518 | Msa0107000:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 16923695 | 16925611 | 16923695 | ID=Msa0107000;Name=Msa0107000 |
| chr1_3 | mRNA | 16923695 | 16925611 | 16923695 | ID=Msa0107000-mRNA-1;Parent=Msa0107000;Name=Msa0107000-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|0.83|0.6|0.5|6|0|318 |
| chr1_3 | exon | 16923695 | 16923781 | 16923695 | ID=Msa0107000-mRNA-1:exon:6386;Parent=Msa0107000-mRNA-1 |
| chr1_3 | exon | 16924183 | 16924411 | 16924183 | ID=Msa0107000-mRNA-1:exon:6387;Parent=Msa0107000-mRNA-1 |
| chr1_3 | exon | 16924427 | 16924618 | 16924427 | ID=Msa0107000-mRNA-1:exon:6388;Parent=Msa0107000-mRNA-1 |
| chr1_3 | exon | 16924717 | 16924844 | 16924717 | ID=Msa0107000-mRNA-1:exon:6389;Parent=Msa0107000-mRNA-1 |
| chr1_3 | exon | 16925144 | 16925368 | 16925144 | ID=Msa0107000-mRNA-1:exon:6390;Parent=Msa0107000-mRNA-1 |
| chr1_3 | exon | 16925516 | 16925611 | 16925516 | ID=Msa0107000-mRNA-1:exon:6391;Parent=Msa0107000-mRNA-1 |
| chr1_3 | CDS | 16923695 | 16923781 | 16923695 | ID=Msa0107000-mRNA-1:cds;Parent=Msa0107000-mRNA-1 |
| chr1_3 | CDS | 16924183 | 16924411 | 16924183 | ID=Msa0107000-mRNA-1:cds;Parent=Msa0107000-mRNA-1 |
| chr1_3 | CDS | 16924427 | 16924618 | 16924427 | ID=Msa0107000-mRNA-1:cds;Parent=Msa0107000-mRNA-1 |
| chr1_3 | CDS | 16924717 | 16924844 | 16924717 | ID=Msa0107000-mRNA-1:cds;Parent=Msa0107000-mRNA-1 |
| chr1_3 | CDS | 16925144 | 16925368 | 16925144 | ID=Msa0107000-mRNA-1:cds;Parent=Msa0107000-mRNA-1 |
| chr1_3 | CDS | 16925516 | 16925611 | 16925516 | ID=Msa0107000-mRNA-1:cds;Parent=Msa0107000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
