Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107010 | XP_039688434.1 | 63.529 | 425 | 68 | 6 | 1 | 340 | 1 | 423 | 1.69e-170 | 508 |
| Msa0107010 | XP_039688434.1 | 72.055 | 433 | 71 | 7 | 351 | 749 | 20 | 436 | 0.0 | 602 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107010 | A0A396JPN4 | 63.529 | 425 | 68 | 6 | 1 | 340 | 1 | 423 | 8.08e-171 | 508 |
| Msa0107010 | A0A396JPN4 | 72.055 | 433 | 71 | 7 | 351 | 749 | 20 | 436 | 0.0 | 602 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0107010 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107010 | MtrunA17_Chr1g0163181 | 72.055 | 433 | 71 | 7 | 351 | 749 | 20 | 436 | 0.0 | 602 |
| Msa0107010 | MtrunA17_Chr1g0163181 | 63.529 | 425 | 68 | 6 | 1 | 340 | 1 | 423 | 1.56e-174 | 508 |
| Msa0107010 | MtrunA17_Chr1g0163201 | 68.765 | 429 | 65 | 6 | 351 | 753 | 18 | 403 | 0.0 | 534 |
| Msa0107010 | MtrunA17_Chr1g0163201 | 68.750 | 384 | 65 | 6 | 20 | 348 | 18 | 401 | 1.71e-166 | 486 |
| Msa0107010 | MtrunA17_Chr1g0163151 | 73.953 | 215 | 53 | 1 | 129 | 340 | 1 | 215 | 2.67e-109 | 332 |
| Msa0107010 | MtrunA17_Chr1g0163151 | 61.417 | 254 | 47 | 3 | 509 | 743 | 1 | 222 | 3.19e-94 | 292 |
| Msa0107010 | MtrunA17_Chr1g0163111 | 65.234 | 256 | 43 | 7 | 509 | 744 | 1 | 230 | 2.57e-98 | 303 |
| Msa0107010 | MtrunA17_Chr1g0163111 | 67.401 | 227 | 54 | 4 | 129 | 340 | 1 | 222 | 3.77e-95 | 295 |
| Msa0107010 | MtrunA17_Chr1g0163251 | 48.387 | 372 | 138 | 11 | 351 | 685 | 20 | 374 | 3.53e-93 | 296 |
| Msa0107010 | MtrunA17_Chr1g0163251 | 44.638 | 345 | 116 | 6 | 1 | 285 | 1 | 330 | 4.67e-79 | 259 |
| Msa0107010 | MtrunA17_Chr1g0163261 | 41.581 | 291 | 121 | 6 | 351 | 613 | 24 | 293 | 1.39e-61 | 209 |
| Msa0107010 | MtrunA17_Chr1g0163261 | 34.653 | 303 | 136 | 5 | 1 | 250 | 1 | 294 | 8.98e-46 | 166 |
| Msa0107010 | MtrunA17_Chr1g0163231 | 43.571 | 280 | 112 | 9 | 351 | 606 | 24 | 281 | 7.22e-58 | 199 |
| Msa0107010 | MtrunA17_Chr1g0163231 | 38.966 | 290 | 117 | 10 | 1 | 240 | 1 | 280 | 5.79e-49 | 174 |
| Msa0107010 | MtrunA17_Chr1g0171611 | 42.500 | 280 | 103 | 8 | 351 | 606 | 24 | 269 | 4.31e-55 | 191 |
| Msa0107010 | MtrunA17_Chr1g0171611 | 37.288 | 295 | 103 | 9 | 1 | 240 | 1 | 268 | 2.26e-42 | 155 |
| Msa0107010 | MtrunA17_Chr1g0163241 | 57.386 | 176 | 56 | 5 | 329 | 503 | 5 | 162 | 2.82e-51 | 176 |
| Msa0107010 | MtrunA17_Chr1g0163241 | 45.570 | 158 | 32 | 5 | 1 | 120 | 7 | 148 | 2.22e-27 | 108 |
| Msa0107010 | MtrunA17_Chr1g0163191 | 68.750 | 144 | 43 | 1 | 351 | 494 | 20 | 161 | 2.38e-49 | 171 |
| Msa0107010 | MtrunA17_Chr1g0163191 | 63.125 | 160 | 21 | 2 | 1 | 123 | 1 | 159 | 9.86e-45 | 157 |
| Msa0107010 | MtrunA17_Chr6g0476171 | 37.089 | 213 | 122 | 5 | 138 | 340 | 29 | 239 | 2.75e-35 | 134 |
| Msa0107010 | MtrunA17_Chr6g0476171 | 32.526 | 289 | 123 | 10 | 479 | 741 | 2 | 244 | 1.75e-30 | 120 |
| Msa0107010 | MtrunA17_Chr1g0162151 | 37.838 | 222 | 111 | 8 | 129 | 342 | 1 | 203 | 3.62e-31 | 121 |
| Msa0107010 | MtrunA17_Chr1g0162151 | 33.333 | 258 | 95 | 7 | 509 | 741 | 1 | 206 | 3.76e-29 | 115 |
| Msa0107010 | MtrunA17_Chr8g0390841 | 23.881 | 469 | 273 | 13 | 351 | 741 | 54 | 516 | 2.68e-30 | 125 |
| Msa0107010 | MtrunA17_Chr8g0390841 | 24.590 | 305 | 153 | 11 | 14 | 250 | 48 | 343 | 5.32e-14 | 75.5 |
| Msa0107010 | MtrunA17_Chr1g0163091 | 40.559 | 143 | 76 | 4 | 129 | 263 | 1 | 142 | 1.31e-27 | 109 |
| Msa0107010 | MtrunA17_Chr1g0163091 | 40.152 | 132 | 55 | 3 | 509 | 616 | 1 | 132 | 1.96e-23 | 97.8 |
| Msa0107010 | MtrunA17_Chr1g0208771 | 24.835 | 455 | 272 | 16 | 349 | 741 | 10 | 456 | 1.17e-25 | 111 |
| Msa0107010 | MtrunA17_Chr1g0208771 | 25.418 | 299 | 158 | 8 | 20 | 256 | 12 | 307 | 2.91e-13 | 72.8 |
| Msa0107010 | MtrunA17_Chr1g0163131 | 30.325 | 277 | 164 | 10 | 352 | 603 | 34 | 306 | 5.00e-25 | 106 |
| Msa0107010 | MtrunA17_Chr1g0163131 | 55.696 | 79 | 31 | 2 | 668 | 744 | 232 | 308 | 1.40e-18 | 87.4 |
| Msa0107010 | MtrunA17_Chr1g0163131 | 39.344 | 122 | 67 | 4 | 221 | 338 | 180 | 298 | 1.28e-16 | 81.6 |
| Msa0107010 | MtrunA17_Chr1g0163131 | 26.573 | 286 | 143 | 9 | 14 | 238 | 27 | 306 | 2.17e-14 | 74.7 |
| Msa0107010 | MtrunA17_Chr1g0162161 | 36.538 | 156 | 85 | 4 | 349 | 503 | 1 | 143 | 1.11e-23 | 98.2 |
| Msa0107010 | MtrunA17_Chr1g0163101 | 43.119 | 109 | 60 | 2 | 352 | 459 | 33 | 140 | 2.50e-21 | 92.0 |
| Msa0107010 | MtrunA17_Chr1g0163101 | 32.886 | 149 | 46 | 4 | 14 | 122 | 26 | 160 | 2.85e-12 | 65.9 |
| Msa0107010 | MtrunA17_Chr7g0233521 | 28.571 | 280 | 155 | 9 | 352 | 604 | 2 | 263 | 3.29e-21 | 94.7 |
| Msa0107010 | MtrunA17_Chr7g0233561 | 25.915 | 328 | 201 | 7 | 316 | 612 | 4 | 320 | 5.00e-21 | 95.1 |
| Msa0107010 | MtrunA17_Chr7g0233561 | 26.000 | 300 | 146 | 8 | 8 | 237 | 17 | 310 | 1.30e-16 | 82.0 |
| Msa0107010 | MtrunA17_Chr7g0233541 | 27.875 | 287 | 165 | 9 | 352 | 604 | 2 | 280 | 6.43e-21 | 94.0 |
| Msa0107010 | MtrunA17_Chr3g0131891 | 29.032 | 279 | 162 | 9 | 352 | 604 | 35 | 303 | 7.45e-21 | 94.7 |
| Msa0107010 | MtrunA17_Chr3g0131891 | 26.690 | 281 | 142 | 9 | 14 | 237 | 28 | 301 | 1.52e-14 | 75.5 |
| Msa0107010 | MtrunA17_Chr1g0163121 | 44.037 | 109 | 58 | 2 | 348 | 454 | 7 | 114 | 1.30e-20 | 89.0 |
| Msa0107010 | MtrunA17_Chr1g0163221 | 26.053 | 380 | 180 | 15 | 14 | 339 | 20 | 352 | 3.44e-20 | 93.2 |
| Msa0107010 | MtrunA17_Chr3g0103171 | 24.648 | 284 | 162 | 7 | 349 | 602 | 3 | 264 | 2.87e-19 | 88.6 |
| Msa0107010 | MtrunA17_Chr3g0103171 | 25.670 | 261 | 150 | 7 | 20 | 237 | 5 | 264 | 5.65e-13 | 70.1 |
| Msa0107010 | MtrunA17_Chr1g0163081 | 34.043 | 141 | 91 | 2 | 348 | 487 | 2 | 141 | 1.09e-18 | 83.6 |
| Msa0107010 | MtrunA17_Chr6g0476181 | 34.615 | 156 | 94 | 4 | 352 | 503 | 2 | 153 | 1.64e-18 | 83.6 |
| Msa0107010 | MtrunA17_Chr7g0233571 | 26.749 | 243 | 122 | 6 | 324 | 539 | 4 | 217 | 7.16e-16 | 77.4 |
| Msa0107010 | MtrunA17_Chr7g0233531 | 28.214 | 280 | 156 | 9 | 352 | 604 | 2 | 263 | 7.29e-16 | 79.0 |
| Msa0107010 | MtrunA17_Chr1g0163141 | 32.727 | 165 | 93 | 3 | 344 | 505 | 3 | 152 | 1.58e-15 | 75.5 |
| Msa0107010 | MtrunA17_Chr1g0163071 | 24.333 | 300 | 184 | 9 | 352 | 611 | 2 | 298 | 1.93e-15 | 78.2 |
| Msa0107010 | MtrunA17_Chr1g0163161 | 39.175 | 97 | 56 | 2 | 364 | 458 | 1 | 96 | 7.79e-15 | 72.0 |
| Msa0107010 | MtrunA17_Chr5g0419201 | 30.909 | 165 | 100 | 5 | 329 | 491 | 15 | 167 | 8.43e-15 | 73.6 |
| Msa0107010 | MtrunA17_Chr3g0103181 | 25.000 | 264 | 176 | 7 | 351 | 602 | 25 | 278 | 1.23e-14 | 75.1 |
| Msa0107010 | MtrunA17_Chr4g0067431 | 26.117 | 291 | 177 | 11 | 330 | 590 | 15 | 297 | 1.10e-13 | 72.8 |
| Msa0107010 | MtrunA17_Chr3g0103191 | 27.536 | 207 | 122 | 7 | 351 | 548 | 25 | 212 | 1.59e-13 | 71.2 |
| Msa0107010 | MtrunA17_Chr3g0103151 | 30.769 | 104 | 70 | 1 | 351 | 452 | 25 | 128 | 9.39e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 142 sgRNAs with CRISPR-Local
Find 687 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTTTGGGCTTGGTTTCT+TGG | 0.120870 | 1_3:+16933809 | None:intergenic |
| CAACACCGTTTGGAAATTTA+AGG | 0.151014 | 1_3:+16935090 | None:intergenic |
| CTTTGGGATTGCTTCGTTTC+CGG | 0.173590 | 1_3:+16944699 | None:intergenic |
| TTTGCAAAGCCTTTCAAATA+TGG | 0.200041 | 1_3:-16935005 | Msa0107010:CDS |
| TTAATACCTTGTAGTTTCTT+TGG | 0.226171 | 1_3:+16944682 | None:intergenic |
| ACCAAAGGAGTTTATGAAAA+AGG | 0.244641 | 1_3:-16944094 | Msa0107010:CDS |
| GAAACACCTAGTAATTTCTT+TGG | 0.254190 | 1_3:+16933795 | None:intergenic |
| ATTGTCCTTTGAGCTTTCTT+TGG | 0.254871 | 1_3:+16945513 | None:intergenic |
| AAATATTGTGGAGTTGAAAA+TGG | 0.256652 | 1_3:-16932897 | Msa0107010:CDS |
| AAATATTGTGGAGTTGAAAA+TGG | 0.256652 | 1_3:-16944061 | Msa0107010:CDS |
| TTCATCAACTGATTTGATAT+TGG | 0.261684 | 1_3:+16945641 | None:intergenic |
| ACAAATATGTGGAGAAATAT+TGG | 0.262291 | 1_3:-16945878 | Msa0107010:CDS |
| CCCTCAAGAAAATTTCCTTT+TGG | 0.271368 | 1_3:+16933599 | None:intergenic |
| GTGGTGGTTGGAAAATATTC+AGG | 0.274486 | 1_3:-16944810 | Msa0107010:CDS |
| TATTTCTCCACATATATCTT+AGG | 0.281171 | 1_3:+16935140 | None:intergenic |
| GGAGTGTGGAAGTGGGTTTA+AGG | 0.287521 | 1_3:-16933974 | Msa0107010:intron |
| TGGAGAGTAATGGTGATATT+TGG | 0.287546 | 1_3:-16935049 | Msa0107010:CDS |
| GCATAACACATTCAAGGTTT+TGG | 0.294441 | 1_3:-16933067 | Msa0107010:CDS |
| GCATAACACATTCAAGGTTT+TGG | 0.294441 | 1_3:-16944233 | Msa0107010:CDS |
| TTTGGAAATTTAAGGAATAT+AGG | 0.302976 | 1_3:+16935098 | None:intergenic |
| TTCTCTCATCAATCAACTTA+AGG | 0.303800 | 1_3:+16932756 | None:intergenic |
| AAAGCTCAAAGGACAATAAA+TGG | 0.303877 | 1_3:-16945507 | Msa0107010:CDS |
| TTACACCAATGGCTATTTCT+TGG | 0.306445 | 1_3:-16945036 | Msa0107010:intron |
| TTTGGAAACTTAAGGAATAT+AGG | 0.310007 | 1_3:+16945840 | None:intergenic |
| CTCTTAACTTTCAAATTCAT+TGG | 0.314459 | 1_3:-16934978 | Msa0107010:CDS |
| ATTAGTTGTTTGTTCTCTTA+AGG | 0.317019 | 1_3:-16943861 | Msa0107010:intron |
| AGATATATGTGGAGAAATAT+TGG | 0.326941 | 1_3:-16935136 | Msa0107010:CDS |
| TTAATGGAACTGCAACAATA+AGG | 0.327052 | 1_3:-16944900 | Msa0107010:CDS |
| TATTTCTCCACATATTTGTT+TGG | 0.329296 | 1_3:+16945882 | None:intergenic |
| TAATACCTTGTAGTTTCTTT+GGG | 0.332861 | 1_3:+16944683 | None:intergenic |
| CTTGGAGAACAAACAGCTAA+TGG | 0.342183 | 1_3:+16932698 | None:intergenic |
| GTGTTTGATGTTTCAATTGC+AGG | 0.344942 | 1_3:-16932728 | Msa0107010:CDS |
| TTGGAAATTTAAGGAATATA+GGG | 0.346499 | 1_3:+16935099 | None:intergenic |
| TTGGAAACTTAAGGAATATA+GGG | 0.346499 | 1_3:+16945841 | None:intergenic |
| ATAGTAACAGTGAATAAAAT+TGG | 0.350107 | 1_3:+16933840 | None:intergenic |
| CAACACCGTTTGGAAACTTA+AGG | 0.350789 | 1_3:+16945832 | None:intergenic |
| CATTAACAGCTTCAGATGTT+TGG | 0.351304 | 1_3:+16945093 | None:intergenic |
| ATGCTCAGCTAATGGATTCT+TGG | 0.352041 | 1_3:+16932680 | None:intergenic |
| AAACACCTAGTAATTTCTTT+GGG | 0.357748 | 1_3:+16933796 | None:intergenic |
| GAGGTTAGTTTGAGGTATTA+TGG | 0.363534 | 1_3:-16944856 | Msa0107010:intron |
| AATATTATTCTATGAAAATC+TGG | 0.366274 | 1_3:+16946029 | None:intergenic |
| AATTATTATGAGAGTATTCA+TGG | 0.374261 | 1_3:-16932848 | Msa0107010:CDS |
| CCTAGTAATTTCTTTGGGCT+TGG | 0.381459 | 1_3:+16933801 | None:intergenic |
| GAATATAAATGCTCAGCTAA+TGG | 0.384102 | 1_3:+16932672 | None:intergenic |
| TGGCAAAAGAAAAGCAAGTA+TGG | 0.385288 | 1_3:-16934700 | Msa0107010:CDS |
| TTAAGAGAACAAACAACTAA+TGG | 0.398173 | 1_3:+16943863 | None:intergenic |
| ATAGTGACAGTGAATGAAAA+AGG | 0.401426 | 1_3:+16944730 | None:intergenic |
| ATAGTTTATTTCTAAAGTAT+TGG | 0.406626 | 1_3:+16945665 | None:intergenic |
| TCATTAACAGCTTCGGATGT+TGG | 0.413325 | 1_3:+16934202 | None:intergenic |
| AAAGAATGCAAAGTGGAGAT+TGG | 0.426567 | 1_3:-16932791 | Msa0107010:CDS |
| AGTATTCGTGGCTGCAGGTT+CGG | 0.433843 | 1_3:-16944000 | Msa0107010:CDS |
| CCAAGCCCAAAGAAATTACT+AGG | 0.436880 | 1_3:-16933801 | Msa0107010:intron |
| AAAGCATGCAGAGTGGAGAT+TGG | 0.451382 | 1_3:-16943955 | Msa0107010:CDS |
| AATATTGTGGAGTTGAAAAT+GGG | 0.451536 | 1_3:-16932896 | Msa0107010:CDS |
| GATGAAGCATAACACATTCA+AGG | 0.455053 | 1_3:-16933073 | Msa0107010:CDS |
| CAAGCTCAAAGGACAAGAAA+TGG | 0.458246 | 1_3:-16934720 | Msa0107010:CDS |
| GATGATGAAGCCACAGAAGA+AGG | 0.459646 | 1_3:-16934798 | Msa0107010:CDS |
| GGGATTCTCATTAACAGCTT+CGG | 0.464683 | 1_3:+16934195 | None:intergenic |
| CAAAGTGGCCATGGTGAAGA+AGG | 0.465563 | 1_3:-16934236 | Msa0107010:CDS |
| CAAAGTGGCCATGGTGAAGA+AGG | 0.465563 | 1_3:-16945126 | Msa0107010:CDS |
| TGTTCTCTTGAAAACTCACT+TGG | 0.469674 | 1_3:+16934044 | None:intergenic |
| TGTCATTATAACTTGAAAAG+AGG | 0.472819 | 1_3:+16934174 | None:intergenic |
| TGTCATTATAACTTCAAAAG+AGG | 0.475259 | 1_3:+16945064 | None:intergenic |
| TTAACTTTCAAATTCATTGG+TGG | 0.475675 | 1_3:-16934975 | Msa0107010:CDS |
| GTCATTATAACTTGAAAAGA+GGG | 0.482400 | 1_3:+16934175 | None:intergenic |
| GGTGCTGAAGCCACTGAAGA+AGG | 0.486856 | 1_3:-16934876 | Msa0107010:CDS |
| GGTGCTGAAGCCACTGAAGA+AGG | 0.489506 | 1_3:-16945618 | Msa0107010:CDS |
| GATGAAGCATAACACATTCA+AGG | 0.490908 | 1_3:-16944239 | Msa0107010:CDS |
| ACTACCAAACAAAATTTCTC+AGG | 0.491692 | 1_3:-16934669 | Msa0107010:intron |
| AATATTGTGGAGTTGAAAAT+GGG | 0.495187 | 1_3:-16944060 | Msa0107010:CDS |
| ATGAAAGTATTCGTGGCTGC+AGG | 0.495909 | 1_3:-16944005 | Msa0107010:CDS |
| GCTGCAGGTTCGGTAAAGAT+TGG | 0.496239 | 1_3:-16943990 | Msa0107010:CDS |
| TACTGTACAGAAGGTCATGA+TGG | 0.501012 | 1_3:-16944262 | Msa0107010:intron |
| TCATGGCTGCAGATTCAGTA+AGG | 0.502175 | 1_3:-16932831 | Msa0107010:CDS |
| TCATAGTAGTGTTGTAAAGA+AGG | 0.502465 | 1_3:-16933651 | Msa0107010:CDS |
| TGAAAATGGGGAGGAAGTCA+TGG | 0.505391 | 1_3:-16932883 | Msa0107010:CDS |
| GTCATTATAACTTCAAAAGA+GGG | 0.507540 | 1_3:+16945065 | None:intergenic |
| GGGATATCATGAAAATATTG+TGG | 0.510552 | 1_3:-16944073 | Msa0107010:CDS |
| ACTTTCTTTCCCTTCTTCTG+TGG | 0.511416 | 1_3:+16934788 | None:intergenic |
| AAAGAAAGATCTTGTTTGAG+TGG | 0.511955 | 1_3:-16944829 | Msa0107010:intron |
| GGAGTGTGGAGGTTAGTTTG+AGG | 0.513468 | 1_3:-16944864 | Msa0107010:CDS |
| ACTTTCTTTACCTTCTTCAG+TGG | 0.514754 | 1_3:+16945608 | None:intergenic |
| CCAAAGGAGTTCATGAAAAG+AGG | 0.514812 | 1_3:-16932929 | Msa0107010:CDS |
| ACTTTCTTGAACTTCTTCTG+TGG | 0.518992 | 1_3:+16934833 | None:intergenic |
| AAGAGATATCCATATTTGAA+AGG | 0.520085 | 1_3:+16934996 | None:intergenic |
| ATATTCCTTAAGTTTCCAAA+CGG | 0.523936 | 1_3:-16945837 | Msa0107010:CDS |
| AATTATTATGAAAGTATTCG+TGG | 0.525033 | 1_3:-16944012 | Msa0107010:CDS |
| GTTGTAAAGAAGGAAGACAT+TGG | 0.525708 | 1_3:-16933641 | Msa0107010:CDS |
| GAGTTCTGATGAAGTTGAAA+TGG | 0.525927 | 1_3:-16934748 | Msa0107010:CDS |
| AGGATGTCATGAAAATATTG+TGG | 0.531604 | 1_3:-16932909 | Msa0107010:CDS |
| GATCTTGTTTGAGTGGTGGT+TGG | 0.533761 | 1_3:-16944822 | Msa0107010:CDS |
| ATATTCCTTAAATTTCCAAA+CGG | 0.536219 | 1_3:-16935095 | Msa0107010:CDS |
| AATGGCAAGAGAAAATTCTC+AGG | 0.536390 | 1_3:-16945489 | Msa0107010:intron |
| AATATCAAATCAGTTGATGA+AGG | 0.540855 | 1_3:-16945639 | Msa0107010:CDS |
| AATATCAAAGCAGTTGATGA+AGG | 0.544297 | 1_3:-16934897 | Msa0107010:intron |
| GGAACTGCAACAATAAGGAT+TGG | 0.545715 | 1_3:-16944895 | Msa0107010:CDS |
| ACTTGACTCGCCTTCTTCAG+TGG | 0.548239 | 1_3:+16934866 | None:intergenic |
| TAATGAAAGGAGTGTGGAAG+TGG | 0.550991 | 1_3:-16933982 | Msa0107010:CDS |
| CAATAAGAGTTGGTAATGAA+AGG | 0.551596 | 1_3:-16933995 | Msa0107010:CDS |
| CAATAAGGATTGGTAATGAA+AGG | 0.554265 | 1_3:-16944885 | Msa0107010:CDS |
| GTAAATTTGAGATGATTCGA+CGG | 0.557247 | 1_3:-16944756 | Msa0107010:CDS |
| ACTTCTATGAGCCATCCAAA+AGG | 0.562331 | 1_3:-16933614 | Msa0107010:CDS |
| GGGACTGCAACAATAAGAGT+TGG | 0.570294 | 1_3:-16934005 | Msa0107010:CDS |
| GTATTTGCAGAGTGTACCAA+AGG | 0.570521 | 1_3:-16944109 | Msa0107010:intron |
| TGGTGGTTGGAAAATATTCA+GGG | 0.571283 | 1_3:-16944809 | Msa0107010:CDS |
| TTTGGTGAAGAACACAGCCC+CGG | 0.573521 | 1_3:-16944215 | Msa0107010:intron |
| AGTTGGTAATGAAAGGAGTG+TGG | 0.575242 | 1_3:-16933988 | Msa0107010:CDS |
| ATGATGAAGCCACAGAAGAA+GGG | 0.575475 | 1_3:-16934797 | Msa0107010:CDS |
| GAGGGTTCCAAACAAATATG+TGG | 0.582236 | 1_3:-16945889 | Msa0107010:CDS |
| ACTTACCAAGTGATAGCCAT+TGG | 0.585954 | 1_3:+16934141 | None:intergenic |
| GAGGGTTCCTAAGATATATG+TGG | 0.586451 | 1_3:-16935147 | Msa0107010:CDS |
| ACTTACCAAGAAATAGCCAT+TGG | 0.587587 | 1_3:+16945031 | None:intergenic |
| GTATTTGTAGAGTGTACCAA+AGG | 0.588430 | 1_3:-16932945 | Msa0107010:intron |
| AGGTAGTAACAAAGTGGCCA+TGG | 0.588636 | 1_3:-16934245 | Msa0107010:CDS |
| TGAAAATGGGAAGAAAGTCA+TGG | 0.592127 | 1_3:-16944047 | Msa0107010:CDS |
| GATTGGTAATGAAAGGAGTG+TGG | 0.593114 | 1_3:-16944878 | Msa0107010:CDS |
| ACTGTCACTATTACTCATGC+CGG | 0.593593 | 1_3:-16944718 | Msa0107010:CDS |
| AGGTTGTAACAAAGTGGCCA+TGG | 0.594476 | 1_3:-16945135 | Msa0107010:CDS |
| GCAATCCCAAAGAAACTACA+AGG | 0.598347 | 1_3:-16944688 | Msa0107010:intron |
| CTTTACAGGTTGTAACAAAG+TGG | 0.599398 | 1_3:-16945141 | Msa0107010:intron |
| TGGTAATGAAAGGAGTGTGG+AGG | 0.599510 | 1_3:-16944875 | Msa0107010:CDS |
| ATGACACAATCTTACGCCAA+TGG | 0.605919 | 1_3:-16934157 | Msa0107010:CDS |
| ATGACACAATCTTACACCAA+TGG | 0.609025 | 1_3:-16945047 | Msa0107010:CDS |
| ATTTATGAAAGAATGCAAAG+TGG | 0.609427 | 1_3:-16932798 | Msa0107010:CDS |
| TTACGCCAATGGCTATCACT+TGG | 0.610546 | 1_3:-16934146 | Msa0107010:intron |
| GAAAGATCTTGTTTGAGTGG+TGG | 0.614967 | 1_3:-16944826 | Msa0107010:CDS |
| TATGTGGAGAAATATTGGAA+AGG | 0.617787 | 1_3:-16935131 | Msa0107010:CDS |
| TATGTGGAGAAATATTGGAA+AGG | 0.617787 | 1_3:-16945873 | Msa0107010:CDS |
| GTTCTCTTGAAAACTCACTT+GGG | 0.618431 | 1_3:+16934045 | None:intergenic |
| GCTGCAGATTCAGTAAGGGA+TGG | 0.619047 | 1_3:-16932826 | Msa0107010:CDS |
| TTTGGTGAAGAACACAGACC+CGG | 0.625237 | 1_3:-16933049 | Msa0107010:intron |
| AAATGGCAAAGCAAGCTCAA+AGG | 0.625671 | 1_3:-16934731 | Msa0107010:CDS |
| AAGTGATGAAGAGAGTGATG+AGG | 0.629681 | 1_3:-16945544 | Msa0107010:CDS |
| TTGTGGAGTTGAAAATGGGG+AGG | 0.632079 | 1_3:-16932892 | Msa0107010:CDS |
| CATGGCTGCAGATTCAGTAA+GGG | 0.636738 | 1_3:-16932830 | Msa0107010:CDS |
| AATGAAAGGAGTGTGGAAGT+GGG | 0.647980 | 1_3:-16933981 | Msa0107010:CDS |
| TGTTCTCTTGAAAACTCACA+TGG | 0.651484 | 1_3:+16944934 | None:intergenic |
| CTTTGCAGGTAGTAACAAAG+TGG | 0.652952 | 1_3:-16934251 | Msa0107010:intron |
| AAATGCCAAAGAAAGCTCAA+AGG | 0.663329 | 1_3:-16945518 | Msa0107010:CDS |
| ACTGTACAGAAGGTCATGAT+GGG | 0.685690 | 1_3:-16944261 | Msa0107010:intron |
| ATTTATGAAAGCATGCAGAG+TGG | 0.691626 | 1_3:-16943962 | Msa0107010:CDS |
| ATATTGTGGAGTTGAAAATG+GGG | 0.692849 | 1_3:-16932895 | Msa0107010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAAAATATGTTTTTTTTTA+TGG | - | chr1_3:16933305-16933324 | Msa0107010:intron | 10.0% |
| !! | ATCATTTATGATAAAAAATT+TGG | - | chr1_3:16933349-16933368 | Msa0107010:intron | 10.0% |
| !!! | TATAGATTTTATTATTGTAA+AGG | - | chr1_3:16934024-16934043 | Msa0107010:CDS | 10.0% |
| !!! | AATTAAAAAAGTTTTCAATT+TGG | - | chr1_3:16934084-16934103 | Msa0107010:intron | 10.0% |
| !!! | ATGAATAATTTATAAGTTTT+TGG | - | chr1_3:16934118-16934137 | Msa0107010:intron | 10.0% |
| !! | CATATAATATATAGTTAATT+AGG | + | chr1_3:16934212-16934231 | None:intergenic | 10.0% |
| !! | ATAACAATATATATTGAATT+TGG | - | chr1_3:16935433-16935452 | Msa0107010:intron | 10.0% |
| !!! | ATTAATTTTAGATTTTACTT+TGG | + | chr1_3:16935741-16935760 | None:intergenic | 10.0% |
| !!! | TAAAATCTAAAATTAATTGA+AGG | - | chr1_3:16935744-16935763 | Msa0107010:intron | 10.0% |
| !!! | AAAATCTAAAATTAATTGAA+GGG | - | chr1_3:16935745-16935764 | Msa0107010:intron | 10.0% |
| !! | AATTAAATAATATAGACATT+CGG | - | chr1_3:16935903-16935922 | Msa0107010:intron | 10.0% |
| !!! | AGTGATTTATTTTTAAAAAA+TGG | + | chr1_3:16937909-16937928 | None:intergenic | 10.0% |
| !!! | TTATATAAAAATATGTGTTT+TGG | - | chr1_3:16938052-16938071 | Msa0107010:intron | 10.0% |
| !!! | AACAAGATATATTTTATTTT+CGG | - | chr1_3:16939766-16939785 | Msa0107010:intron | 10.0% |
| !!! | GTATTATTTATAAGTTTTTA+AGG | + | chr1_3:16940254-16940273 | None:intergenic | 10.0% |
| !!! | TTTTTTTATATAGTTTATGT+TGG | + | chr1_3:16942502-16942521 | None:intergenic | 10.0% |
| !! | ATGAAGTTTATATTTATAAT+AGG | - | chr1_3:16942576-16942595 | Msa0107010:intron | 10.0% |
| !!! | ATAATTTATTTCTAAAGTAT+TGG | + | chr1_3:16943679-16943698 | None:intergenic | 10.0% |
| !!! | TTTTATTTTCAGATAATTTT+TGG | - | chr1_3:16944150-16944169 | Msa0107010:intron | 10.0% |
| !!! | TATAATAATCTATTTTGTTT+AGG | + | chr1_3:16944318-16944337 | None:intergenic | 10.0% |
| !!! | GTATTTTAAATTTAAGATTA+AGG | + | chr1_3:16945193-16945212 | None:intergenic | 10.0% |
| !! | TTAAAATTATTTCAAATTCA+CGG | + | chr1_3:16945216-16945235 | None:intergenic | 10.0% |
| !! | TTAAAATTATTTCAAATTCA+CGG | + | chr1_3:16945216-16945235 | None:intergenic | 10.0% |
| !!! | TCAAATATATCTAATTTTTT+TGG | - | chr1_3:16945441-16945460 | Msa0107010:intron | 10.0% |
| !!! | CAAATATATCTAATTTTTTT+GGG | - | chr1_3:16945442-16945461 | Msa0107010:intron | 10.0% |
| !! | AATATTATTCTATGAAAATC+TGG | + | chr1_3:16932573-16932592 | None:intergenic | 15.0% |
| !!! | TGTTGAACAAAAAATATTTT+GGG | - | chr1_3:16932785-16932804 | Msa0107010:CDS | 15.0% |
| !!! | TATTTTAAGGTTAAGATATT+TGG | - | chr1_3:16932909-16932928 | Msa0107010:CDS | 15.0% |
| !!! | ATAGTTTATTTCTAAAGTAT+TGG | + | chr1_3:16932937-16932956 | None:intergenic | 15.0% |
| !!! | AATATGTTTTTTTTTATGGA+AGG | - | chr1_3:16933309-16933328 | Msa0107010:intron | 15.0% |
| !! | ATTATATCTTTAAACTTTAC+AGG | - | chr1_3:16933444-16933463 | Msa0107010:intron | 15.0% |
| !!! | AGTTTTTAATAGTTAGTAAT+TGG | - | chr1_3:16934145-16934164 | Msa0107010:intron | 15.0% |
| !!! | TTCAAATATCTCTAAATTTT+TGG | - | chr1_3:16934271-16934290 | Msa0107010:intron | 15.0% |
| !!! | TCAAATATCTCTAAATTTTT+GGG | - | chr1_3:16934272-16934291 | Msa0107010:intron | 15.0% |
| !!! | AATTATTTTAAGTTTCCTTT+TGG | - | chr1_3:16935130-16935149 | Msa0107010:CDS | 15.0% |
| !!! | CTTTTATGATTTCAATTAAA+TGG | - | chr1_3:16936335-16936354 | Msa0107010:intron | 15.0% |
| !! | TTAAATGGTATTCTATTAAA+TGG | - | chr1_3:16936350-16936369 | Msa0107010:intron | 15.0% |
| !!! | AAAACACAATTTTTATTGAT+TGG | + | chr1_3:16937246-16937265 | None:intergenic | 15.0% |
| !!! | ATTTTTCAACTTCTAAATTT+TGG | + | chr1_3:16938881-16938900 | None:intergenic | 15.0% |
| !!! | ATTTTAGTTAACCAAATATA+TGG | + | chr1_3:16939050-16939069 | None:intergenic | 15.0% |
| !!! | TTAACTAAAATTTTCTAGAA+TGG | - | chr1_3:16939059-16939078 | Msa0107010:intron | 15.0% |
| !!! | TGTTCTTAATTTATTTTAAG+TGG | - | chr1_3:16939575-16939594 | Msa0107010:intron | 15.0% |
| !!! | GTTCTTAATTTATTTTAAGT+GGG | - | chr1_3:16939576-16939595 | Msa0107010:intron | 15.0% |
| !!! | CTTTTAACTTTTAAATACAT+AGG | - | chr1_3:16939861-16939880 | Msa0107010:intron | 15.0% |
| !! | TATTTCAAGGTTAAAATATT+TGG | - | chr1_3:16939891-16939910 | Msa0107010:intron | 15.0% |
| !! | AATAGTTTACTTCTAAATAT+TGG | + | chr1_3:16939919-16939938 | None:intergenic | 15.0% |
| !! | ATAAGTTTCTTTATAACTTA+GGG | + | chr1_3:16940342-16940361 | None:intergenic | 15.0% |
| !! | TATAAGTTTCTTTATAACTT+AGG | + | chr1_3:16940343-16940362 | None:intergenic | 15.0% |
| !! | TATGATCATATCTATATTTA+AGG | - | chr1_3:16940802-16940821 | Msa0107010:intron | 15.0% |
| !! | ATGATCATATCTATATTTAA+GGG | - | chr1_3:16940803-16940822 | Msa0107010:intron | 15.0% |
| !! | ATGAAAATTATATAATATGG+CGG | + | chr1_3:16941188-16941207 | None:intergenic | 15.0% |
| !! | TGCATGAAAATTATATAATA+TGG | + | chr1_3:16941191-16941210 | None:intergenic | 15.0% |
| !!! | TAAAATTTCTATTTTTGTCA+AGG | + | chr1_3:16941383-16941402 | None:intergenic | 15.0% |
| !! | TAAATATAAACTTCATTGTT+AGG | + | chr1_3:16942572-16942591 | None:intergenic | 15.0% |
| !!! | TTGCAAATATAAACATTTTT+AGG | + | chr1_3:16942616-16942635 | None:intergenic | 15.0% |
| !!! | ATTTTCTATCTAATTTTTTC+TGG | + | chr1_3:16943038-16943057 | None:intergenic | 15.0% |
| !!! | TGTTGAACAAAAAATATTTT+GGG | - | chr1_3:16932785-16932804 | Msa0107010:CDS | 15.0% |
| !!! | ATATTTGGTTTCAAAAAAAT+TGG | - | chr1_3:16943565-16943584 | Msa0107010:intron | 15.0% |
| !!! | TATTTGGTTTCAAAAAAATT+GGG | - | chr1_3:16943566-16943585 | Msa0107010:intron | 15.0% |
| !!! | TATTTTAAGGTTAAGATATA+TGG | - | chr1_3:16943651-16943670 | Msa0107010:intron | 15.0% |
| !!! | TGATTTTTCTCTTTTTTTTT+TGG | - | chr1_3:16943953-16943972 | Msa0107010:CDS | 15.0% |
| !!! | TAAAAATATGTGACTTTTTT+TGG | - | chr1_3:16944188-16944207 | Msa0107010:intron | 15.0% |
| !!! | ATGAATAACTTATTAGTTTT+TGG | - | chr1_3:16945146-16945165 | Msa0107010:intron | 15.0% |
| !! | TAAAATTATTTCAAATTCAC+GGG | + | chr1_3:16945215-16945234 | None:intergenic | 15.0% |
| !! | TAAAATTATTTCAAATTCAC+GGG | + | chr1_3:16945215-16945234 | None:intergenic | 15.0% |
| !! | ATTTGAATAGATTTATAGTT+AGG | + | chr1_3:16945427-16945446 | None:intergenic | 15.0% |
| !! | GAAATCATACATTAACAATA+GGG | + | chr1_3:16932673-16932692 | None:intergenic | 20.0% |
| !! | AGAAATCATACATTAACAAT+AGG | + | chr1_3:16932674-16932693 | None:intergenic | 20.0% |
| !!! | GTGTTGAACAAAAAATATTT+TGG | - | chr1_3:16932784-16932803 | Msa0107010:CDS | 20.0% |
| !! | ATATATGGTTTCAGAAAAAT+TGG | - | chr1_3:16932823-16932842 | Msa0107010:CDS | 20.0% |
| !! | TATATGGTTTCAGAAAAATT+GGG | - | chr1_3:16932824-16932843 | Msa0107010:CDS | 20.0% |
| !!! | TAAATCATTATTTGAAACAG+TGG | - | chr1_3:16933639-16933658 | Msa0107010:CDS | 20.0% |
| !!! | CAAATATCTCTAAATTTTTG+GGG | - | chr1_3:16934273-16934292 | Msa0107010:intron | 20.0% |
| !!! | TTTTATACAATTAATCCTAC+CGG | + | chr1_3:16934406-16934425 | None:intergenic | 20.0% |
| !!! | AATTATTATGAAAGTATTCG+TGG | - | chr1_3:16934587-16934606 | Msa0107010:intron | 20.0% |
| !! | TTGTTTGATGTTTCAATTAT+AGG | - | chr1_3:16934707-16934726 | Msa0107010:CDS | 20.0% |
| !! | TGTAGAAATAAATATCCAAA+GGG | + | chr1_3:16934793-16934812 | None:intergenic | 20.0% |
| !! | TTGTAGAAATAAATATCCAA+AGG | + | chr1_3:16934794-16934813 | None:intergenic | 20.0% |
| !!! | TTAATCTGTCACTTTATATA+AGG | + | chr1_3:16934994-16935013 | None:intergenic | 20.0% |
| !!! | AAAAAAATAGTATTGGAGAA+GGG | + | chr1_3:16935482-16935501 | None:intergenic | 20.0% |
| !!! | AAAAAAAATAGTATTGGAGA+AGG | + | chr1_3:16935483-16935502 | None:intergenic | 20.0% |
| !! | GGAACTAAAAAAAATAGTAT+TGG | + | chr1_3:16935489-16935508 | None:intergenic | 20.0% |
| !! | TTAGTTCCTTCAAATTAAAA+TGG | - | chr1_3:16935501-16935520 | Msa0107010:intron | 20.0% |
| !! | ATTAGAAATGTTAGACAATT+TGG | + | chr1_3:16935677-16935696 | None:intergenic | 20.0% |
| !! | GTCTAACATTTCTAATTTAA+AGG | - | chr1_3:16935681-16935700 | Msa0107010:intron | 20.0% |
| !! | CTATAGGTAAAATTATACTT+TGG | + | chr1_3:16935772-16935791 | None:intergenic | 20.0% |
| !! | GTTGTAATTAATTAAGGATT+AGG | - | chr1_3:16935925-16935944 | Msa0107010:intron | 20.0% |
| !! | TTTCTTTCAATCTAAATAAG+TGG | - | chr1_3:16936605-16936624 | Msa0107010:intron | 20.0% |
| !! | TTTATTTCCTATTGAAAGAT+TGG | - | chr1_3:16936748-16936767 | Msa0107010:intron | 20.0% |
| !! | NNNNNNNCCAATCTTTCAAT+AGG | + | chr1_3:16936758-16936777 | None:intergenic | 20.0% |
| !! | TACAAATTCAACCAATAATT+TGG | - | chr1_3:16936882-16936901 | Msa0107010:intron | 20.0% |
| !! | ACAAATTCAACCAATAATTT+GGG | - | chr1_3:16936883-16936902 | Msa0107010:intron | 20.0% |
| !!! | GGTTTTATCATATTATTTGT+AGG | - | chr1_3:16936950-16936969 | Msa0107010:intron | 20.0% |
| !!! | TCTATTTCTAGTTTATATTG+TGG | - | chr1_3:16937473-16937492 | Msa0107010:intron | 20.0% |
| !! | ACTCATTTAGTATTAGATTA+AGG | - | chr1_3:16937868-16937887 | Msa0107010:intron | 20.0% |
| !! | CTCATTTAGTATTAGATTAA+GGG | - | chr1_3:16937869-16937888 | Msa0107010:intron | 20.0% |
| !! | TCATTTAGTATTAGATTAAG+GGG | - | chr1_3:16937870-16937889 | Msa0107010:intron | 20.0% |
| !!! | TACTTTTTAAGAGTTATTCA+TGG | - | chr1_3:16937947-16937966 | Msa0107010:intron | 20.0% |
| !! | TATATCTGTATTTGATTCTT+TGG | - | chr1_3:16938176-16938195 | Msa0107010:intron | 20.0% |
| !!! | AAATTGTTTGATTTTAGTCA+TGG | - | chr1_3:16938263-16938282 | Msa0107010:intron | 20.0% |
| !! | AAATCAACATAAGTCTTAAA+GGG | + | chr1_3:16938336-16938355 | None:intergenic | 20.0% |
| !! | AAAATCAACATAAGTCTTAA+AGG | + | chr1_3:16938337-16938356 | None:intergenic | 20.0% |
| !!! | AAGACTTATGTTGATTTTTT+TGG | - | chr1_3:16938339-16938358 | Msa0107010:intron | 20.0% |
| !! | TTAAAATAGTTCATCTATCA+TGG | + | chr1_3:16938391-16938410 | None:intergenic | 20.0% |
| !!! | TAAGTTTTATTATTGTTCCT+TGG | + | chr1_3:16938573-16938592 | None:intergenic | 20.0% |
| !! | ATAAAACTCAAATTTGTACA+TGG | - | chr1_3:16938609-16938628 | Msa0107010:intron | 20.0% |
| !!! | TCTAAATTTTGGAAAAATAG+TGG | + | chr1_3:16938870-16938889 | None:intergenic | 20.0% |
| !!! | AAATTCTGGAAAAAAAATAG+CGG | - | chr1_3:16938993-16939012 | Msa0107010:intron | 20.0% |
| !!! | TTTACTTTTTGTATTCTAGT+TGG | + | chr1_3:16939198-16939217 | None:intergenic | 20.0% |
| !!! | TTTATGTTCTTCAAACATTT+TGG | - | chr1_3:16939480-16939499 | Msa0107010:intron | 20.0% |
| !!! | AAGATATATTTTATTTTCGG+TGG | - | chr1_3:16939769-16939788 | Msa0107010:intron | 20.0% |
| !!! | TTTTCAAAGTCTCTTAAATA+TGG | - | chr1_3:16939834-16939853 | Msa0107010:intron | 20.0% |
| !!! | TTAACTTTTAAATACATAGG+TGG | - | chr1_3:16939864-16939883 | Msa0107010:intron | 20.0% |
| !!! | TTCATCAACAGATTTTATAT+TGG | + | chr1_3:16939942-16939961 | None:intergenic | 20.0% |
| !! | GAGATTATATAAAACAACTT+AGG | + | chr1_3:16940296-16940315 | None:intergenic | 20.0% |
| !! | ATAAAGAAACTTATACATCA+AGG | - | chr1_3:16940348-16940367 | Msa0107010:intron | 20.0% |
| !! | TAAAGAAACTTATACATCAA+GGG | - | chr1_3:16940349-16940368 | Msa0107010:intron | 20.0% |
| !! | TATAAAATAAAATTGAGCGA+GGG | - | chr1_3:16940444-16940463 | Msa0107010:intron | 20.0% |
| !! | TCAACAAAATTGTCATTAAA+TGG | - | chr1_3:16940639-16940658 | Msa0107010:intron | 20.0% |
| !! | TGTATTGTAATTCTTCAATT+TGG | - | chr1_3:16941987-16942006 | Msa0107010:intron | 20.0% |
| !!! | ACTGTTTTTTAACTGATTTT+TGG | - | chr1_3:16942020-16942039 | Msa0107010:intron | 20.0% |
| !!! | CTGTTTTTTAACTGATTTTT+GGG | - | chr1_3:16942021-16942040 | Msa0107010:intron | 20.0% |
| !!! | TAATCTGCCATTTTTATATA+AGG | + | chr1_3:16942819-16942838 | None:intergenic | 20.0% |
| !! | TATATAAAAATGGCAGATTA+AGG | - | chr1_3:16942819-16942838 | Msa0107010:intron | 20.0% |
| !! | ATATAAAAATGGCAGATTAA+GGG | - | chr1_3:16942820-16942839 | Msa0107010:intron | 20.0% |
| !!! | TAAAGACATTTTTTGTAGTA+TGG | + | chr1_3:16943117-16943136 | None:intergenic | 20.0% |
| !! | AAAATTATCCTATGAAAATC+TGG | + | chr1_3:16943298-16943317 | None:intergenic | 20.0% |
| !! | TTGGAAATTTAAGGAATATA+GGG | + | chr1_3:16943503-16943522 | None:intergenic | 20.0% |
| !! | TTTGGAAATTTAAGGAATAT+AGG | + | chr1_3:16943504-16943523 | None:intergenic | 20.0% |
| !! | ATATTCCTTAAATTTCCAAA+CGG | - | chr1_3:16943504-16943523 | Msa0107010:intron | 20.0% |
| !!! | GTGTTGAACAAAAAATATTT+TGG | - | chr1_3:16932784-16932803 | Msa0107010:CDS | 20.0% |
| !!! | TACTTTTAAGACTTATTCAA+TGG | - | chr1_3:16944062-16944081 | Msa0107010:CDS | 20.0% |
| !!! | AACACTTGAAAGATTTTAAA+GGG | - | chr1_3:16944574-16944593 | Msa0107010:intron | 20.0% |
| !! | ATAGTAACAGTGAATAAAAT+TGG | + | chr1_3:16944762-16944781 | None:intergenic | 20.0% |
| !! | CATGATAAGGTTATAAAAAA+GGG | - | chr1_3:16944917-16944936 | Msa0107010:CDS | 20.0% |
| !! | ATGATAAGGTTATAAAAAAG+GGG | - | chr1_3:16944918-16944937 | Msa0107010:CDS | 20.0% |
| !! | TAACAGAAAAAATTGAATAC+CGG | + | chr1_3:16945285-16945304 | None:intergenic | 20.0% |
| !! | TAACAGAAAAAATTGAATAC+CGG | + | chr1_3:16945285-16945304 | None:intergenic | 20.0% |
| !!! | TTTTATGTAATTAATCCTAC+CGG | + | chr1_3:16945572-16945591 | None:intergenic | 20.0% |
| !!! | AATTATTATGAGAGTATTCA+TGG | - | chr1_3:16945751-16945770 | Msa0107010:intron | 20.0% |
| !!! | GATTGTTTGTAATGTTTTTT+TGG | - | chr1_3:16946032-16946051 | Msa0107010:CDS | 20.0% |
| ! | TATTTCTCCACATATTTGTT+TGG | + | chr1_3:16932720-16932739 | None:intergenic | 25.0% |
| ! | ACAAATATGTGGAGAAATAT+TGG | - | chr1_3:16932721-16932740 | Msa0107010:CDS | 25.0% |
| ! | TTGGAAACTTAAGGAATATA+GGG | + | chr1_3:16932761-16932780 | None:intergenic | 25.0% |
| ! | TTTGGAAACTTAAGGAATAT+AGG | + | chr1_3:16932762-16932781 | None:intergenic | 25.0% |
| ! | ATATTCCTTAAGTTTCCAAA+CGG | - | chr1_3:16932762-16932781 | Msa0107010:CDS | 25.0% |
| !!! | TGAACAAAAAATATTTTGGG+TGG | - | chr1_3:16932788-16932807 | Msa0107010:CDS | 25.0% |
| ! | AAGAGATATCCATATTTGAA+AGG | + | chr1_3:16932864-16932883 | None:intergenic | 25.0% |
| ! | CTCTTAACTTTCAAATTCAT+TGG | - | chr1_3:16932879-16932898 | Msa0107010:CDS | 25.0% |
| ! | TTAACTTTCAAATTCATTGG+TGG | - | chr1_3:16932882-16932901 | Msa0107010:CDS | 25.0% |
| !!! | TTCATCAACTGATTTGATAT+TGG | + | chr1_3:16932961-16932980 | None:intergenic | 25.0% |
| !!! | AATATCAAATCAGTTGATGA+AGG | - | chr1_3:16932960-16932979 | Msa0107010:intron | 25.0% |
| !!! | AACTTTTAAGAGTTATTCCA+TGG | - | chr1_3:16933186-16933205 | Msa0107010:intron | 25.0% |
| ! | GTCATTATAACTTCAAAAGA+GGG | + | chr1_3:16933537-16933556 | None:intergenic | 25.0% |
| ! | TGTCATTATAACTTCAAAAG+AGG | + | chr1_3:16933538-16933557 | None:intergenic | 25.0% |
| !! | GAACACTTGAAAGATTTTAA+TGG | - | chr1_3:16933683-16933702 | Msa0107010:intron | 25.0% |
| ! | TAATACCTTGTAGTTTCTTT+GGG | + | chr1_3:16933919-16933938 | None:intergenic | 25.0% |
| ! | TTAATACCTTGTAGTTTCTT+TGG | + | chr1_3:16933920-16933939 | None:intergenic | 25.0% |
| ! | AATTGAATCCAAGATAAGTT+AGG | + | chr1_3:16934171-16934190 | None:intergenic | 25.0% |
| ! | TTTATACAATTAATCCTACC+GGG | + | chr1_3:16934405-16934424 | None:intergenic | 25.0% |
| ! | AAATATTGTGGAGTTGAAAA+TGG | - | chr1_3:16934538-16934557 | Msa0107010:intron | 25.0% |
| ! | AATATTGTGGAGTTGAAAAT+GGG | - | chr1_3:16934539-16934558 | Msa0107010:intron | 25.0% |
| ! | TTAAGAGAACAAACAACTAA+TGG | + | chr1_3:16934739-16934758 | None:intergenic | 25.0% |
| ! | ATTAGTTGTTTGTTCTCTTA+AGG | - | chr1_3:16934738-16934757 | Msa0107010:CDS | 25.0% |
| !!! | TGATTGCATGTAATGTTTTT+TGG | - | chr1_3:16934873-16934892 | Msa0107010:CDS | 25.0% |
| ! | GATTGAATGTAAATTGCATA+TGG | - | chr1_3:16935031-16935050 | Msa0107010:CDS | 25.0% |
| ! | AACAAACTTAAATGACCAAA+AGG | + | chr1_3:16935148-16935167 | None:intergenic | 25.0% |
| ! | TAAACCCAGAAAAACTTAAA+GGG | + | chr1_3:16935216-16935235 | None:intergenic | 25.0% |
| ! | TTAAACCCAGAAAAACTTAA+AGG | + | chr1_3:16935217-16935236 | None:intergenic | 25.0% |
| ! | AGTATAAACGTTTAACACTT+TGG | - | chr1_3:16935251-16935270 | Msa0107010:intron | 25.0% |
| ! | TCCTTCAAATTAAAATGGTT+TGG | - | chr1_3:16935506-16935525 | Msa0107010:intron | 25.0% |
| !!! | ACCAAACCATTTTAATTTGA+AGG | + | chr1_3:16935510-16935529 | None:intergenic | 25.0% |
| !!! | AAGAATTGAAAGTTTTAGGA+GGG | + | chr1_3:16935566-16935585 | None:intergenic | 25.0% |
| !!! | AAAGAATTGAAAGTTTTAGG+AGG | + | chr1_3:16935567-16935586 | None:intergenic | 25.0% |
| !! | TGGAAAGAATTGAAAGTTTT+AGG | + | chr1_3:16935570-16935589 | None:intergenic | 25.0% |
| !!! | ATGCTGCTTTGATTTTTTTT+TGG | - | chr1_3:16935801-16935820 | Msa0107010:intron | 25.0% |
| ! | CATTCGGTTGTAATTAATTA+AGG | - | chr1_3:16935919-16935938 | Msa0107010:intron | 25.0% |
| ! | AATCCTAAAACTGAAGATAA+TGG | - | chr1_3:16935954-16935973 | Msa0107010:intron | 25.0% |
| ! | GATTATATTTCAGTGAAAGT+TGG | + | chr1_3:16936295-16936314 | None:intergenic | 25.0% |
| !!! | GTAAAAAGTGTTTGACATTT+AGG | + | chr1_3:16936418-16936437 | None:intergenic | 25.0% |
| ! | GTATGTCTAGTTGAATAATT+TGG | + | chr1_3:16937208-16937227 | None:intergenic | 25.0% |
| ! | AAAATGAATGCAACAAAGTA+AGG | - | chr1_3:16937266-16937285 | Msa0107010:intron | 25.0% |
| !!! | TGTTTTTAACATCAAAGCAA+AGG | - | chr1_3:16937389-16937408 | Msa0107010:intron | 25.0% |
| !!! | GAGTTAATTTTGGAGTAAAT+AGG | + | chr1_3:16937505-16937524 | None:intergenic | 25.0% |
| !! | GAACATGGATTTTGAATATT+GGG | + | chr1_3:16937649-16937668 | None:intergenic | 25.0% |
| !! | TGAACATGGATTTTGAATAT+TGG | + | chr1_3:16937650-16937669 | None:intergenic | 25.0% |
| ! | ATCATAGAACAAAAATCCAA+AGG | + | chr1_3:16938130-16938149 | None:intergenic | 25.0% |
| !! | GATTTTTGTTCTATGATTGT+TGG | - | chr1_3:16938133-16938152 | Msa0107010:intron | 25.0% |
| !! | TATTTGATTCTTTGGAAACA+AGG | - | chr1_3:16938184-16938203 | Msa0107010:intron | 25.0% |
| ! | AGTCATATTGTCTTTAATGA+AGG | + | chr1_3:16938442-16938461 | None:intergenic | 25.0% |
| ! | TGTATCTCATTAATATGTCA+TGG | + | chr1_3:16938535-16938554 | None:intergenic | 25.0% |
| !!! | CAAGTGTTTTGATAATAATC+TGG | - | chr1_3:16938687-16938706 | Msa0107010:intron | 25.0% |
| !! | ACAAAAGTGTACAACTTAAA+AGG | + | chr1_3:16938780-16938799 | None:intergenic | 25.0% |
| !!! | AATTTTCTAGAATGGTACAA+AGG | - | chr1_3:16939067-16939086 | Msa0107010:intron | 25.0% |
| ! | ATTTCGTTTCGAAAAATGAT+AGG | + | chr1_3:16939116-16939135 | None:intergenic | 25.0% |
| ! | TCTTTCATTGAAGATATTGT+TGG | + | chr1_3:16939159-16939178 | None:intergenic | 25.0% |
| ! | ACAATATCTTCAATGAAAGA+AGG | - | chr1_3:16939159-16939178 | Msa0107010:intron | 25.0% |
| ! | AAAGGTAAAACTTGAGATAT+GGG | + | chr1_3:16939252-16939271 | None:intergenic | 25.0% |
| ! | TAACCAATATGGAATCAATT+GGG | + | chr1_3:16939325-16939344 | None:intergenic | 25.0% |
| !!! | CAAACATTGTATTTTTGCAT+TGG | + | chr1_3:16939557-16939576 | None:intergenic | 25.0% |
| !! | GTTTTTATGTTCTATACCAT+TGG | + | chr1_3:16939675-16939694 | None:intergenic | 25.0% |
| !!! | ATTTTTATCTTGCCATTTCT+TGG | + | chr1_3:16940040-16940059 | None:intergenic | 25.0% |
| ! | TAGAGAAGTTTAAATCACAA+CGG | - | chr1_3:16940406-16940425 | Msa0107010:intron | 25.0% |
| ! | GTATAAAATAAAATTGAGCG+AGG | - | chr1_3:16940443-16940462 | Msa0107010:intron | 25.0% |
| !!! | TTGTTTTTCTCACTTCTTAT+TGG | + | chr1_3:16940614-16940633 | None:intergenic | 25.0% |
| ! | ATCATATCTATATTTAAGGG+TGG | - | chr1_3:16940806-16940825 | Msa0107010:intron | 25.0% |
| ! | TCATATCTATATTTAAGGGT+GGG | - | chr1_3:16940807-16940826 | Msa0107010:intron | 25.0% |
| ! | AATTCGAAATGCAAACAATT+TGG | + | chr1_3:16940903-16940922 | None:intergenic | 25.0% |
| ! | AATAACATTTCGGAATAGTT+CGG | + | chr1_3:16940949-16940968 | None:intergenic | 25.0% |
| ! | CTATTCCGAAATGTTATTAT+TGG | - | chr1_3:16940951-16940970 | Msa0107010:intron | 25.0% |
| ! | TGGTACCAATAATAACATTT+CGG | + | chr1_3:16940959-16940978 | None:intergenic | 25.0% |
| !! | AAAGATTCCGATTCATTTTA+GGG | - | chr1_3:16941589-16941608 | Msa0107010:intron | 25.0% |
| ! | AGATGAAAATAGAGAAATGA+TGG | + | chr1_3:16941647-16941666 | None:intergenic | 25.0% |
| ! | TTGCTTACTAGTAAATGAAA+AGG | + | chr1_3:16942182-16942201 | None:intergenic | 25.0% |
| ! | TTTACTAGTAAGCAATTGTT+TGG | - | chr1_3:16942187-16942206 | Msa0107010:intron | 25.0% |
| ! | GTTCAATGGATATTATAGTT+AGG | - | chr1_3:16942234-16942253 | Msa0107010:intron | 25.0% |
| !!! | AGTTTTGATGATACACAAAT+AGG | - | chr1_3:16942465-16942484 | Msa0107010:intron | 25.0% |
| !!! | TTTTTATATAAGGTACTGTC+TGG | + | chr1_3:16942809-16942828 | None:intergenic | 25.0% |
| ! | GACAGTACCTTATATAAAAA+TGG | - | chr1_3:16942809-16942828 | Msa0107010:intron | 25.0% |
| ! | TAGTACAATTCAGTGAAAAT+TGG | + | chr1_3:16942953-16942972 | None:intergenic | 25.0% |
| ! | TATTTCTCCACATATATCTT+AGG | + | chr1_3:16943462-16943481 | None:intergenic | 25.0% |
| ! | AGATATATGTGGAGAAATAT+TGG | - | chr1_3:16943463-16943482 | Msa0107010:intron | 25.0% |
| !!! | TGAACAAAAAATATTTTGGG+TGG | - | chr1_3:16932788-16932807 | Msa0107010:CDS | 25.0% |
| ! | AAGAGATATCCATATTTGAA+AGG | + | chr1_3:16932864-16932883 | None:intergenic | 25.0% |
| ! | CTCTTAACTTTCAAATTCAT+TGG | - | chr1_3:16932879-16932898 | Msa0107010:CDS | 25.0% |
| ! | TTAACTTTCAAATTCATTGG+TGG | - | chr1_3:16932882-16932901 | Msa0107010:CDS | 25.0% |
| !!! | TGTTGCAATTTTTTGTCTAA+AGG | - | chr1_3:16944087-16944106 | Msa0107010:CDS | 25.0% |
| ! | AATTATGAAGCAGATTTAGT+TGG | - | chr1_3:16944127-16944146 | Msa0107010:intron | 25.0% |
| !!! | AATATGTGACTTTTTTTGGT+AGG | - | chr1_3:16944192-16944211 | Msa0107010:intron | 25.0% |
| ! | TATATCTCTTTAAACTTTGC+AGG | - | chr1_3:16944334-16944353 | Msa0107010:intron | 25.0% |
| ! | GTCATTATAACTTGAAAAGA+GGG | + | chr1_3:16944427-16944446 | None:intergenic | 25.0% |
| ! | TGTCATTATAACTTGAAAAG+AGG | + | chr1_3:16944428-16944447 | None:intergenic | 25.0% |
| !! | GAACACTTGAAAGATTTTAA+AGG | - | chr1_3:16933683-16933702 | Msa0107010:intron | 25.0% |
| !! | TTTAAGGTATTATGATACCA+AGG | - | chr1_3:16944641-16944660 | Msa0107010:intron | 25.0% |
| ! | AAACACCTAGTAATTTCTTT+GGG | + | chr1_3:16944806-16944825 | None:intergenic | 25.0% |
| !! | TATTTCTTTTGTCCATGATA+AGG | - | chr1_3:16944904-16944923 | Msa0107010:CDS | 25.0% |
| !!! | CCTTTTTTATAACCTTATCA+TGG | + | chr1_3:16944919-16944938 | None:intergenic | 25.0% |
| ! | CCATGATAAGGTTATAAAAA+AGG | - | chr1_3:16944916-16944935 | Msa0107010:CDS | 25.0% |
| ! | TTTATGTAATTAATCCTACC+GGG | + | chr1_3:16945571-16945590 | None:intergenic | 25.0% |
| ! | AAATATTGTGGAGTTGAAAA+TGG | - | chr1_3:16934538-16934557 | Msa0107010:intron | 25.0% |
| ! | AATATTGTGGAGTTGAAAAT+GGG | - | chr1_3:16934539-16934558 | Msa0107010:intron | 25.0% |
| ! | ATTTATGAAAGAATGCAAAG+TGG | - | chr1_3:16945801-16945820 | Msa0107010:intron | 25.0% |
| ACATTAACAATAGGGTTTAC+AGG | + | chr1_3:16932665-16932684 | None:intergenic | 30.0% | |
| TATGTGGAGAAATATTGGAA+AGG | - | chr1_3:16932726-16932745 | Msa0107010:CDS | 30.0% | |
| !!! | ATTTTTTGTTCAACACCGTT+TGG | + | chr1_3:16932780-16932799 | None:intergenic | 30.0% |
| TTTGCAAAGCCTTTCAAATA+TGG | - | chr1_3:16932852-16932871 | Msa0107010:CDS | 30.0% | |
| !! | CATTGGTGGATCATATTTTA+AGG | - | chr1_3:16932896-16932915 | Msa0107010:CDS | 30.0% |
| ! | ACTTTCTTCATCTTCTTTTG+TGG | + | chr1_3:16933039-16933058 | None:intergenic | 30.0% |
| AAAGCTCAAAGGACAATAAA+TGG | - | chr1_3:16933092-16933111 | Msa0107010:intron | 30.0% | |
| GAAAAAATCACAACAAACCA+TGG | + | chr1_3:16933206-16933225 | None:intergenic | 30.0% | |
| TCTGAAAGCTTGTAAATCTA+AGG | - | chr1_3:16933226-16933245 | Msa0107010:intron | 30.0% | |
| TTAATGGAACTGCAACAATA+AGG | - | chr1_3:16933699-16933718 | Msa0107010:intron | 30.0% | |
| !! | CAATAAGGATTGGTAATGAA+AGG | - | chr1_3:16933714-16933733 | Msa0107010:intron | 30.0% |
| ! | AAAGAAAGATCTTGTTTGAG+TGG | - | chr1_3:16933770-16933789 | Msa0107010:intron | 30.0% |
| ! | GTAAATTTGAGATGATTCGA+CGG | - | chr1_3:16933843-16933862 | Msa0107010:CDS | 30.0% |
| ATAGTGACAGTGAATGAAAA+AGG | + | chr1_3:16933872-16933891 | None:intergenic | 30.0% | |
| TTATACAATTAATCCTACCG+GGG | + | chr1_3:16934404-16934423 | None:intergenic | 30.0% | |
| ACCAAAGGAGTTTATGAAAA+AGG | - | chr1_3:16934505-16934524 | Msa0107010:intron | 30.0% | |
| CCAAAGGAGTTTATGAAAAA+GGG | - | chr1_3:16934506-16934525 | Msa0107010:intron | 30.0% | |
| GGGATATCATGAAAATATTG+TGG | - | chr1_3:16934526-16934545 | Msa0107010:intron | 30.0% | |
| ATTGCATATGGTTCTTAGAA+CGG | - | chr1_3:16935043-16935062 | Msa0107010:CDS | 30.0% | |
| !! | TTGATCCCTTTAAGTTTTTC+TGG | - | chr1_3:16935208-16935227 | Msa0107010:intron | 30.0% |
| !! | TGATCCCTTTAAGTTTTTCT+GGG | - | chr1_3:16935209-16935228 | Msa0107010:intron | 30.0% |
| !!! | AGAATTGAAAGTTTTAGGAG+GGG | + | chr1_3:16935565-16935584 | None:intergenic | 30.0% |
| GAAAAAAAGGAAGAAAGAAG+TGG | + | chr1_3:16935590-16935609 | None:intergenic | 30.0% | |
| AGGGACCAAAATAAAACTTA+AGG | - | chr1_3:16935649-16935668 | Msa0107010:intron | 30.0% | |
| GGGACCAAAATAAAACTTAA+GGG | - | chr1_3:16935650-16935669 | Msa0107010:intron | 30.0% | |
| !!! | TGGTCCCTTAAGTTTTATTT+TGG | + | chr1_3:16935657-16935676 | None:intergenic | 30.0% |
| ! | GTACCATTATCTTCAGTTTT+AGG | + | chr1_3:16935960-16935979 | None:intergenic | 30.0% |
| TGCGTCTAATCAAATTTAAC+AGG | + | chr1_3:16936248-16936267 | None:intergenic | 30.0% | |
| GTTTCTCTTACTAGAGAAAT+TGG | + | chr1_3:16936484-16936503 | None:intergenic | 30.0% | |
| AAGAAAGTTTAGAGAGAAGT+TGG | + | chr1_3:16936508-16936527 | None:intergenic | 30.0% | |
| AAAGAGAAAAAAGATGTCGA+GGG | + | chr1_3:16936587-16936606 | None:intergenic | 30.0% | |
| AAAAGAGAAAAAAGATGTCG+AGG | + | chr1_3:16936588-16936607 | None:intergenic | 30.0% | |
| CCCAAGTTAATAGCATAAAA+CGG | + | chr1_3:16936983-16937002 | None:intergenic | 30.0% | |
| ! | CCGTTTTATGCTATTAACTT+GGG | - | chr1_3:16936980-16936999 | Msa0107010:intron | 30.0% |
| ATGTACTTATAGTATGAGCT+TGG | + | chr1_3:16937144-16937163 | None:intergenic | 30.0% | |
| AAGCTCATACTATAAGTACA+TGG | - | chr1_3:16937143-16937162 | Msa0107010:intron | 30.0% | |
| CGCAAAGTAAAATGTAGATT+TGG | + | chr1_3:16937452-16937471 | None:intergenic | 30.0% | |
| ATGTTATAAAGTCGATAGGT+TGG | + | chr1_3:16937567-16937586 | None:intergenic | 30.0% | |
| CTATCCAACAAAAATTCTCA+AGG | - | chr1_3:16937810-16937829 | Msa0107010:intron | 30.0% | |
| ! | TCAACCTTGAGAATTTTTGT+TGG | + | chr1_3:16937817-16937836 | None:intergenic | 30.0% |
| !! | AGGCTAATACGATACTTTTT+AGG | + | chr1_3:16938110-16938129 | None:intergenic | 30.0% |
| !! | AAAAGTATCGTATTAGCCTT+TGG | - | chr1_3:16938111-16938130 | Msa0107010:intron | 30.0% |
| TAAAGACAATATGACTTCCT+TGG | - | chr1_3:16938446-16938465 | Msa0107010:intron | 30.0% | |
| CATTAATATGTCATGGTACA+TGG | + | chr1_3:16938528-16938547 | None:intergenic | 30.0% | |
| !!! | CTTTTGACTTGAAATGCAAA+TGG | - | chr1_3:16938651-16938670 | Msa0107010:intron | 30.0% |
| GTTCACACAGAGAATATATT+TGG | + | chr1_3:16938827-16938846 | None:intergenic | 30.0% | |
| CACGCATAAATTCTAAATTC+TGG | - | chr1_3:16938979-16938998 | Msa0107010:intron | 30.0% | |
| CATTGAAGATATTGTTGGAT+TGG | + | chr1_3:16939154-16939173 | None:intergenic | 30.0% | |
| GAAAGGTAAAACTTGAGATA+TGG | + | chr1_3:16939253-16939272 | None:intergenic | 30.0% | |
| !! | CTACATGATTTTTCGATGAA+AGG | + | chr1_3:16939270-16939289 | None:intergenic | 30.0% |
| CTAACCAATATGGAATCAAT+TGG | + | chr1_3:16939326-16939345 | None:intergenic | 30.0% | |
| ATCACACATTCTAACCAATA+TGG | + | chr1_3:16939336-16939355 | None:intergenic | 30.0% | |
| ! | ATGTTCTTCAAACATTTTGG+TGG | - | chr1_3:16939483-16939502 | Msa0107010:intron | 30.0% |
| !! | TGTTCTTCAAACATTTTGGT+GGG | - | chr1_3:16939484-16939503 | Msa0107010:intron | 30.0% |
| AACATAGGATAGAACAACAT+TGG | - | chr1_3:16939714-16939733 | Msa0107010:intron | 30.0% | |
| AGAAGCAACTAAAGAAAATG+TGG | - | chr1_3:16939982-16940001 | Msa0107010:intron | 30.0% | |
| ATGTATCTAAGCAATCTCAA+AGG | - | chr1_3:16940014-16940033 | Msa0107010:intron | 30.0% | |
| !!! | TTGTTTTGGCTTTGATGTAA+GGG | + | chr1_3:16940095-16940114 | None:intergenic | 30.0% |
| !!! | ATTGTTTTGGCTTTGATGTA+AGG | + | chr1_3:16940096-16940115 | None:intergenic | 30.0% |
| CATCAAAGCCAAAACAATTT+AGG | - | chr1_3:16940098-16940117 | Msa0107010:intron | 30.0% | |
| AAAATAAGCTCAAACCAAAC+GGG | + | chr1_3:16940125-16940144 | None:intergenic | 30.0% | |
| CAAAATAAGCTCAAACCAAA+CGG | + | chr1_3:16940126-16940145 | None:intergenic | 30.0% | |
| TTTATAACTTAGGGTTCGTT+TGG | + | chr1_3:16940333-16940352 | None:intergenic | 30.0% | |
| !!! | AACCACTTTTTGACAACTTT+TGG | - | chr1_3:16940516-16940535 | Msa0107010:intron | 30.0% |
| AAAACAATGGAGAGAGAAAA+AGG | + | chr1_3:16940588-16940607 | None:intergenic | 30.0% | |
| ! | TTTTCTCTCTCCATTGTTTT+TGG | - | chr1_3:16940588-16940607 | Msa0107010:intron | 30.0% |
| TTCTTATTGGCCAAAAACAA+TGG | + | chr1_3:16940601-16940620 | None:intergenic | 30.0% | |
| GCAAATAGTTCAGTTTAGTT+CGG | + | chr1_3:16940861-16940880 | None:intergenic | 30.0% | |
| GAACTCACACAATTTAATTG+TGG | + | chr1_3:16941347-16941366 | None:intergenic | 30.0% | |
| ! | CAAAGATTCCGATTCATTTT+AGG | - | chr1_3:16941588-16941607 | Msa0107010:intron | 30.0% |
| ACAAAGACCCTAAAATGAAT+CGG | + | chr1_3:16941599-16941618 | None:intergenic | 30.0% | |
| AGAAAACTGAAACAAGAAGA+AGG | - | chr1_3:16941842-16941861 | Msa0107010:intron | 30.0% | |
| ! | TGATAGTGTTTCTCTATTGA+TGG | - | chr1_3:16942063-16942082 | Msa0107010:intron | 30.0% |
| TTTATTGCCGAAGAAAGAAT+AGG | - | chr1_3:16942212-16942231 | Msa0107010:intron | 30.0% | |
| CATTGAACCTATTCTTTCTT+CGG | + | chr1_3:16942222-16942241 | None:intergenic | 30.0% | |
| ! | GCATATTTTGTTCTTAGCAT+AGG | - | chr1_3:16942308-16942327 | Msa0107010:intron | 30.0% |
| ! | GATGAGTAACTTTGTGATTT+TGG | - | chr1_3:16942364-16942383 | Msa0107010:intron | 30.0% |
| ! | TAGTTTATGTTGGATTTGCT+TGG | + | chr1_3:16942492-16942511 | None:intergenic | 30.0% |
| !!! | CTTTTAATTTGCCACAAAAG+TGG | + | chr1_3:16942752-16942771 | None:intergenic | 30.0% |
| !! | TTCTAGCTTACATTGTAAGA+TGG | - | chr1_3:16942782-16942801 | Msa0107010:intron | 30.0% |
| GCATACACTCAAAAATACAT+TGG | + | chr1_3:16942880-16942899 | None:intergenic | 30.0% | |
| !! | TATGACACGATAAAAGTGTT+TGG | + | chr1_3:16942980-16942999 | None:intergenic | 30.0% |
| ! | CACTTTTATCGTGTCATAAA+TGG | - | chr1_3:16942982-16943001 | Msa0107010:intron | 30.0% |
| !!! | TTTTTCTGGTGTTACTACTT+TGG | + | chr1_3:16943024-16943043 | None:intergenic | 30.0% |
| !!! | GACATTTTTTGTAGTATGGT+AGG | + | chr1_3:16943113-16943132 | None:intergenic | 30.0% |
| ! | AACATGTTCCAGATTTTCAT+AGG | - | chr1_3:16932562-16932581 | Msa0107010:three_prime_UTR | 30.0% |
| TATGTGGAGAAATATTGGAA+AGG | - | chr1_3:16932726-16932745 | Msa0107010:CDS | 30.0% | |
| !!! | ATTTTTTGTTCAACACCGTT+TGG | + | chr1_3:16932780-16932799 | None:intergenic | 30.0% |
| TTTGCAAAGCCTTTCAAATA+TGG | - | chr1_3:16932852-16932871 | Msa0107010:CDS | 30.0% | |
| !! | CATTGGTGGATCATATTTTA+AGG | - | chr1_3:16932896-16932915 | Msa0107010:CDS | 30.0% |
| !! | AATATCAAAGCAGTTGATGA+AGG | - | chr1_3:16943702-16943721 | Msa0107010:intron | 30.0% |
| ACTACCAAACAAAATTTCTC+AGG | - | chr1_3:16943930-16943949 | Msa0107010:CDS | 30.0% | |
| ! | ATCACCTGAGAAATTTTGTT+TGG | + | chr1_3:16943937-16943956 | None:intergenic | 30.0% |
| ! | ATTACTCATTTGCTAGACTA+AGG | - | chr1_3:16943982-16944001 | Msa0107010:CDS | 30.0% |
| ! | TAATCCATGATTTGAAACAG+TGG | - | chr1_3:16944529-16944548 | Msa0107010:intron | 30.0% |
| !! | CAATAAGAGTTGGTAATGAA+AGG | - | chr1_3:16944604-16944623 | Msa0107010:intron | 30.0% |
| GAAACACCTAGTAATTTCTT+TGG | + | chr1_3:16944807-16944826 | None:intergenic | 30.0% | |
| TCATAGTAGTGTTGTAAAGA+AGG | - | chr1_3:16944948-16944967 | Msa0107010:intron | 30.0% | |
| ! | CAAGAAAATTTCCTTTTGGA+TGG | + | chr1_3:16944999-16945018 | None:intergenic | 30.0% |
| ! | TCCAAAAGGAAATTTTCTTG+AGG | - | chr1_3:16944999-16945018 | Msa0107010:intron | 30.0% |
| ! | CCAAAAGGAAATTTTCTTGA+GGG | - | chr1_3:16945000-16945019 | Msa0107010:intron | 30.0% |
| AATTGAATACCGGATAAGTT+AGG | + | chr1_3:16945275-16945294 | None:intergenic | 30.0% | |
| AATTGAATACCGGATAAGTT+AGG | + | chr1_3:16945275-16945294 | None:intergenic | 30.0% | |
| !! | TTTTGTTATGCATGTACAGA+AGG | - | chr1_3:16945494-16945513 | Msa0107010:CDS | 30.0% |
| AGGATGTCATGAAAATATTG+TGG | - | chr1_3:16945690-16945709 | Msa0107010:intron | 30.0% | |
| ATATTGTGGAGTTGAAAATG+GGG | - | chr1_3:16934540-16934559 | Msa0107010:intron | 30.0% | |
| TTCTCTCATCAATCAACTTA+AGG | + | chr1_3:16934682-16934701 | None:intergenic | 30.0% | |
| GAATATAAATGCTCAGCTAA+TGG | + | chr1_3:16945930-16945949 | None:intergenic | 30.0% | |
| ! | ATCTTTGAACTTTTGCTCTA+TGG | - | chr1_3:16946010-16946029 | Msa0107010:intron | 30.0% |
| ! | TCTGATTTTCTTTGTTGCAG+AGG | - | chr1_3:16932691-16932710 | Msa0107010:CDS | 35.0% |
| ! | CTGATTTTCTTTGTTGCAGA+GGG | - | chr1_3:16932692-16932711 | Msa0107010:CDS | 35.0% |
| !! | ATATTTTGGGTGGAGAGTAA+TGG | - | chr1_3:16932798-16932817 | Msa0107010:CDS | 35.0% |
| TGGAGAGTAATGGTGATATA+TGG | - | chr1_3:16932808-16932827 | Msa0107010:CDS | 35.0% | |
| ACTTTCTTTACCTTCTTCAG+TGG | + | chr1_3:16932994-16933013 | None:intergenic | 35.0% | |
| AAATGCCAAAGAAAGCTCAA+AGG | - | chr1_3:16933081-16933100 | Msa0107010:CDS | 35.0% | |
| ATTGTCCTTTGAGCTTTCTT+TGG | + | chr1_3:16933089-16933108 | None:intergenic | 35.0% | |
| AATGGCAAGAGAAAATTCTC+AGG | - | chr1_3:16933110-16933129 | Msa0107010:intron | 35.0% | |
| GAAAATTCTCAGGTGAGTTT+AGG | - | chr1_3:16933120-16933139 | Msa0107010:intron | 35.0% | |
| AGTGTCTTGAAAATCGTGTT+TGG | - | chr1_3:16933258-16933277 | Msa0107010:intron | 35.0% | |
| CTTTACAGGTTGTAACAAAG+TGG | - | chr1_3:16933458-16933477 | Msa0107010:intron | 35.0% | |
| CATTAACAGCTTCAGATGTT+TGG | + | chr1_3:16933509-16933528 | None:intergenic | 35.0% | |
| ATGACACAATCTTACACCAA+TGG | - | chr1_3:16933552-16933571 | Msa0107010:intron | 35.0% | |
| !! | TTACACCAATGGCTATTTCT+TGG | - | chr1_3:16933563-16933582 | Msa0107010:intron | 35.0% |
| ACTTACCAAGAAATAGCCAT+TGG | + | chr1_3:16933571-16933590 | None:intergenic | 35.0% | |
| TGTTCTCTTGAAAACTCACA+TGG | + | chr1_3:16933668-16933687 | None:intergenic | 35.0% | |
| !! | GAGGTTAGTTTGAGGTATTA+TGG | - | chr1_3:16933743-16933762 | Msa0107010:intron | 35.0% |
| TGGTGGTTGGAAAATATTCA+GGG | - | chr1_3:16933790-16933809 | Msa0107010:intron | 35.0% | |
| ! | GTAATTGGCCTAACTTATCT+TGG | - | chr1_3:16934160-16934179 | Msa0107010:CDS | 35.0% |
| TTATGCTTGTACTGTACAGA+AGG | - | chr1_3:16934328-16934347 | Msa0107010:intron | 35.0% | |
| GATGAAGCATAACACATTCA+AGG | - | chr1_3:16934360-16934379 | Msa0107010:intron | 35.0% | |
| ! | GCATAACACATTCAAGGTTT+TGG | - | chr1_3:16934366-16934385 | Msa0107010:intron | 35.0% |
| !! | CCCTTTTTCATAAACTCCTT+TGG | + | chr1_3:16934509-16934528 | None:intergenic | 35.0% |
| TGAAAATGGGAAGAAAGTCA+TGG | - | chr1_3:16934552-16934571 | Msa0107010:intron | 35.0% | |
| ! | ATTTATGAAAGCATGCAGAG+TGG | - | chr1_3:16934637-16934656 | Msa0107010:intron | 35.0% |
| TGTTTATTTGCTTTGCCCTT+TGG | - | chr1_3:16934775-16934794 | Msa0107010:CDS | 35.0% | |
| !! | ACTTTATATAAGGTACCGTC+CGG | + | chr1_3:16934984-16935003 | None:intergenic | 35.0% |
| ATATCTGACACATGTGGATT+TGG | - | chr1_3:16935092-16935111 | Msa0107010:CDS | 35.0% | |
| ACTCCCAAACAACACTTTAA+GGG | + | chr1_3:16935278-16935297 | None:intergenic | 35.0% | |
| AACTCCCAAACAACACTTTA+AGG | + | chr1_3:16935279-16935298 | None:intergenic | 35.0% | |
| !! | TAAAGTGTTGTTTGGGAGTT+TGG | - | chr1_3:16935279-16935298 | Msa0107010:intron | 35.0% |
| !!! | GAGAAGGGTTTTAGAAGTTT+GGG | + | chr1_3:16935467-16935486 | None:intergenic | 35.0% |
| AAACTCCCAAATAGAGCATA+AGG | - | chr1_3:16935629-16935648 | Msa0107010:intron | 35.0% | |
| AACTCCCAAATAGAGCATAA+GGG | - | chr1_3:16935630-16935649 | Msa0107010:intron | 35.0% | |
| ! | TTTTTGAATGTGTGCAGTGT+TGG | - | chr1_3:16936025-16936044 | Msa0107010:intron | 35.0% |
| CTTGTGTGACATTAATGTCA+CGG | + | chr1_3:16936201-16936220 | None:intergenic | 35.0% | |
| TTACTAGAGAAATTGGTCCT+TGG | + | chr1_3:16936477-16936496 | None:intergenic | 35.0% | |
| AAGAGAAAAAAGATGTCGAG+GGG | + | chr1_3:16936586-16936605 | None:intergenic | 35.0% | |
| !! | GCCGTTTTATGCTATTAACT+TGG | - | chr1_3:16936979-16936998 | Msa0107010:intron | 35.0% |
| ACATCGCTAAAAACGTAAGA+GGG | + | chr1_3:16937031-16937050 | None:intergenic | 35.0% | |
| AACATCGCTAAAAACGTAAG+AGG | + | chr1_3:16937032-16937051 | None:intergenic | 35.0% | |
| !! | AAAGGCAAAGACACTTTTTG+TGG | - | chr1_3:16937407-16937426 | Msa0107010:intron | 35.0% |
| GTGGATGTTATAAAGTCGAT+AGG | + | chr1_3:16937571-16937590 | None:intergenic | 35.0% | |
| TTATAACATCCACACTTCAC+AGG | - | chr1_3:16937578-16937597 | Msa0107010:intron | 35.0% | |
| GTTATAAATCCTGTGAAGTG+TGG | + | chr1_3:16937590-16937609 | None:intergenic | 35.0% | |
| ! | GGATTTTGAATATTGGGCTA+AGG | + | chr1_3:16937643-16937662 | None:intergenic | 35.0% |
| TGGAAAGAGAAAAGTGAACA+TGG | + | chr1_3:16937664-16937683 | None:intergenic | 35.0% | |
| ! | TTTTGCTGAAGGACAAGAAA+TGG | + | chr1_3:16937684-16937703 | None:intergenic | 35.0% |
| CAAGCTCAAAGGACAATAAA+TGG | - | chr1_3:16937758-16937777 | Msa0107010:intron | 35.0% | |
| TGGCAAGAGAGAAATGAATA+TGG | - | chr1_3:16937778-16937797 | Msa0107010:intron | 35.0% | |
| ATAAATGAATACCAGAGCCA+AGG | + | chr1_3:16938466-16938485 | None:intergenic | 35.0% | |
| ! | TTTGGTTTCATTGTGTTGCA+AGG | + | chr1_3:16938738-16938757 | None:intergenic | 35.0% |
| TGAAACCAAAGAGCAATGAT+AGG | - | chr1_3:16938748-16938767 | Msa0107010:intron | 35.0% | |
| ! | TGTACACTTTTGTACTACTC+TGG | - | chr1_3:16938787-16938806 | Msa0107010:intron | 35.0% |
| TTATGACGAAATGCAAGCTA+TGG | + | chr1_3:16938934-16938953 | None:intergenic | 35.0% | |
| AGTCACAGAGACCATATATT+TGG | - | chr1_3:16939036-16939055 | Msa0107010:intron | 35.0% | |
| ! | CTTCCCAATTGATTCCATAT+TGG | - | chr1_3:16939319-16939338 | Msa0107010:intron | 35.0% |
| AATCTCTCCACATATTCCTT+TGG | + | chr1_3:16939403-16939422 | None:intergenic | 35.0% | |
| ! | AGGAATATGTGGAGAGATTT+TGG | - | chr1_3:16939404-16939423 | Msa0107010:intron | 35.0% |
| !! | TATGTGGAGAGATTTTGGTA+TGG | - | chr1_3:16939409-16939428 | Msa0107010:intron | 35.0% |
| !! | TAGATGCTCTAAGGAGTATT+GGG | + | chr1_3:16939444-16939463 | None:intergenic | 35.0% |
| GTTGTTCTTGAATTTCCATG+TGG | + | chr1_3:16939520-16939539 | None:intergenic | 35.0% | |
| AGTGTTCTCCAATGTTCTTT+AGG | - | chr1_3:16939610-16939629 | Msa0107010:intron | 35.0% | |
| TATGTTCTATACCATTGGAG+TGG | + | chr1_3:16939670-16939689 | None:intergenic | 35.0% | |
| AAACAAGTTCTTATGACCAC+AGG | - | chr1_3:16939691-16939710 | Msa0107010:intron | 35.0% | |
| ! | TTATTTTCGGTGGAGAGTAA+TGG | - | chr1_3:16939779-16939798 | Msa0107010:intron | 35.0% |
| CATAGGTGGATCATATTTCA+AGG | - | chr1_3:16939878-16939897 | Msa0107010:intron | 35.0% | |
| !!! | TGTTTTGGCTTTGATGTAAG+GGG | + | chr1_3:16940094-16940113 | None:intergenic | 35.0% |
| AAATAAGCTCAAACCAAACG+GGG | + | chr1_3:16940124-16940143 | None:intergenic | 35.0% | |
| GTCCAAAAGTTGTCAAAAAG+TGG | + | chr1_3:16940521-16940540 | None:intergenic | 35.0% | |
| TCGAATCCGAAAATTGCATT+GGG | + | chr1_3:16941146-16941165 | None:intergenic | 35.0% | |
| ATCGAATCCGAAAATTGCAT+TGG | + | chr1_3:16941147-16941166 | None:intergenic | 35.0% | |
| ATTGATGAGCTGATCATACT+AGG | - | chr1_3:16941217-16941236 | Msa0107010:intron | 35.0% | |
| ! | TTGTGTGAGTTCTAGTCAAT+AGG | - | chr1_3:16941355-16941374 | Msa0107010:intron | 35.0% |
| !!! | ATTTTAGGGTCTTTGTTCCA+TGG | - | chr1_3:16941603-16941622 | Msa0107010:intron | 35.0% |
| GAAAACAACGAGAGATCAAT+CGG | + | chr1_3:16941747-16941766 | None:intergenic | 35.0% | |
| TCCAATGATTAGAGATGCAA+CGG | - | chr1_3:16941765-16941784 | Msa0107010:intron | 35.0% | |
| CGAAGAAAGAATAGGTTCAA+TGG | - | chr1_3:16942220-16942239 | Msa0107010:intron | 35.0% | |
| !! | ACAAAGCAAATCCACTTTTG+TGG | - | chr1_3:16942738-16942757 | Msa0107010:intron | 35.0% |
| ACAATTCAGTGAAAATTGGC+TGG | + | chr1_3:16942949-16942968 | None:intergenic | 35.0% | |
| TCTCTATAAATGACCTGTAC+TGG | - | chr1_3:16943066-16943085 | Msa0107010:intron | 35.0% | |
| ACTTTATTACTGTCCAGTAC+AGG | + | chr1_3:16943082-16943101 | None:intergenic | 35.0% | |
| ACTGGACAGTAATAAAGTCT+TGG | - | chr1_3:16943084-16943103 | Msa0107010:intron | 35.0% | |
| TTTCACACTTTACACTTCAC+AGG | - | chr1_3:16943148-16943167 | Msa0107010:intron | 35.0% | |
| TCTGAATTTCTTTGTTGCAG+AGG | - | chr1_3:16943433-16943452 | Msa0107010:intron | 35.0% | |
| CTGAATTTCTTTGTTGCAGA+GGG | - | chr1_3:16943434-16943453 | Msa0107010:intron | 35.0% | |
| CAACACCGTTTGGAAATTTA+AGG | + | chr1_3:16943512-16943531 | None:intergenic | 35.0% | |
| !! | ATATTTTGGGTGGAGAGTAA+TGG | - | chr1_3:16932798-16932817 | Msa0107010:CDS | 35.0% |
| TGGAGAGTAATGGTGATATT+TGG | - | chr1_3:16943550-16943569 | Msa0107010:intron | 35.0% | |
| ACTTTCTTGAACTTCTTCTG+TGG | + | chr1_3:16943769-16943788 | None:intergenic | 35.0% | |
| ! | GAGTTCTGATGAAGTTGAAA+TGG | - | chr1_3:16943851-16943870 | Msa0107010:intron | 35.0% |
| TGGCAAAAGAAAAGCAAGTA+TGG | - | chr1_3:16943899-16943918 | Msa0107010:intron | 35.0% | |
| GTTCTCTTGAAAACTCACTT+GGG | + | chr1_3:16944557-16944576 | None:intergenic | 35.0% | |
| TGTTCTCTTGAAAACTCACT+TGG | + | chr1_3:16944558-16944577 | None:intergenic | 35.0% | |
| TACCAAGGAAAACTCTTGTA+TGG | - | chr1_3:16944656-16944675 | Msa0107010:intron | 35.0% | |
| ACCAAGGAAAACTCTTGTAT+GGG | - | chr1_3:16944657-16944676 | Msa0107010:intron | 35.0% | |
| GTTGTAAAGAAGGAAGACAT+TGG | - | chr1_3:16944958-16944977 | Msa0107010:intron | 35.0% | |
| ! | CCCTCAAGAAAATTTCCTTT+TGG | + | chr1_3:16945003-16945022 | None:intergenic | 35.0% |
| AGTGATAGACCTAACTTATC+CGG | - | chr1_3:16945263-16945282 | Msa0107010:intron | 35.0% | |
| AGTGATAGACCTAACTTATC+CGG | - | chr1_3:16945263-16945282 | Msa0107010:intron | 35.0% | |
| GATGAAGCATAACACATTCA+AGG | - | chr1_3:16934360-16934379 | Msa0107010:intron | 35.0% | |
| ! | GCATAACACATTCAAGGTTT+TGG | - | chr1_3:16934366-16934385 | Msa0107010:intron | 35.0% |
| GTATTTGTAGAGTGTACCAA+AGG | - | chr1_3:16945654-16945673 | Msa0107010:CDS | 35.0% | |
| AAAGAATGCAAAGTGGAGAT+TGG | - | chr1_3:16945808-16945827 | Msa0107010:intron | 35.0% | |
| GTGTTTGATGTTTCAATTGC+AGG | - | chr1_3:16945871-16945890 | Msa0107010:CDS | 35.0% | |
| GAGGGTTCCAAACAAATATG+TGG | - | chr1_3:16932710-16932729 | Msa0107010:CDS | 40.0% | |
| CAACACCGTTTGGAAACTTA+AGG | + | chr1_3:16932770-16932789 | None:intergenic | 40.0% | |
| AAGTGATGAAGAGAGTGATG+AGG | - | chr1_3:16933055-16933074 | Msa0107010:CDS | 40.0% | |
| !! | TTTTCTAGCCTTCTTCACCA+TGG | + | chr1_3:16933484-16933503 | None:intergenic | 40.0% |
| GGAACTGCAACAATAAGGAT+TGG | - | chr1_3:16933704-16933723 | Msa0107010:intron | 40.0% | |
| !! | GATTGGTAATGAAAGGAGTG+TGG | - | chr1_3:16933721-16933740 | Msa0107010:intron | 40.0% |
| ! | GAAAGATCTTGTTTGAGTGG+TGG | - | chr1_3:16933773-16933792 | Msa0107010:intron | 40.0% |
| GTGGTGGTTGGAAAATATTC+AGG | - | chr1_3:16933789-16933808 | Msa0107010:intron | 40.0% | |
| ACTGTCACTATTACTCATGC+CGG | - | chr1_3:16933881-16933900 | Msa0107010:CDS | 40.0% | |
| GCAATCCCAAAGAAACTACA+AGG | - | chr1_3:16933911-16933930 | Msa0107010:intron | 40.0% | |
| TACTGTACAGAAGGTCATGA+TGG | - | chr1_3:16934337-16934356 | Msa0107010:intron | 40.0% | |
| ACTGTACAGAAGGTCATGAT+GGG | - | chr1_3:16934338-16934357 | Msa0107010:intron | 40.0% | |
| GTATTTGCAGAGTGTACCAA+AGG | - | chr1_3:16934490-16934509 | Msa0107010:intron | 40.0% | |
| CATTGTGAGCTCATGTGAAA+TGG | - | chr1_3:16934957-16934976 | Msa0107010:CDS | 40.0% | |
| !! | TGGTCCCTTAAAGTGTTGTT+TGG | - | chr1_3:16935271-16935290 | Msa0107010:intron | 40.0% |
| !! | GGTCCCTTAAAGTGTTGTTT+GGG | - | chr1_3:16935272-16935291 | Msa0107010:intron | 40.0% |
| TTGGAGGGAAAAGACTTTAG+AGG | - | chr1_3:16935298-16935317 | Msa0107010:intron | 40.0% | |
| TGGAGGGAAAAGACTTTAGA+GGG | - | chr1_3:16935299-16935318 | Msa0107010:intron | 40.0% | |
| !!! | GGAGAAGGGTTTTAGAAGTT+TGG | + | chr1_3:16935468-16935487 | None:intergenic | 40.0% |
| GAATGGAGGGCTTGAAAAAA+AGG | + | chr1_3:16935603-16935622 | None:intergenic | 40.0% | |
| TTTGGGAGTTTGAACAGGAA+TGG | + | chr1_3:16935620-16935639 | None:intergenic | 40.0% | |
| CTCTATTTGGGAGTTTGAAC+AGG | + | chr1_3:16935625-16935644 | None:intergenic | 40.0% | |
| TGGTCCCTTATGCTCTATTT+GGG | + | chr1_3:16935637-16935656 | None:intergenic | 40.0% | |
| TTGGTCCCTTATGCTCTATT+TGG | + | chr1_3:16935638-16935657 | None:intergenic | 40.0% | |
| GCAGCATGCATGAAAACTAT+AGG | + | chr1_3:16935788-16935807 | None:intergenic | 40.0% | |
| TGTTGGATTATCAAGCAAGC+AGG | - | chr1_3:16936050-16936069 | Msa0107010:intron | 40.0% | |
| GTTGGATTATCAAGCAAGCA+GGG | - | chr1_3:16936051-16936070 | Msa0107010:intron | 40.0% | |
| GCAATGACAATGACAATGTG+TGG | + | chr1_3:16936121-16936140 | None:intergenic | 40.0% | |
| GTGACATTAGATGTGTTGTG+TGG | + | chr1_3:16936151-16936170 | None:intergenic | 40.0% | |
| ATCTAATGTCACCCAATGTG+TGG | - | chr1_3:16936159-16936178 | Msa0107010:intron | 40.0% | |
| TTAAATCTGGGCCACACATT+GGG | + | chr1_3:16936173-16936192 | None:intergenic | 40.0% | |
| ATTAAATCTGGGCCACACAT+TGG | + | chr1_3:16936174-16936193 | None:intergenic | 40.0% | |
| GTCACGGTGACATTAAATCT+GGG | + | chr1_3:16936185-16936204 | None:intergenic | 40.0% | |
| TGTCACGGTGACATTAAATC+TGG | + | chr1_3:16936186-16936205 | None:intergenic | 40.0% | |
| GAAAACACATACCCTAACCA+AGG | - | chr1_3:16936457-16936476 | Msa0107010:intron | 40.0% | |
| GAGAAATTGGTCCTTGGTTA+GGG | + | chr1_3:16936471-16936490 | None:intergenic | 40.0% | |
| AGAGAAATTGGTCCTTGGTT+AGG | + | chr1_3:16936472-16936491 | None:intergenic | 40.0% | |
| AACGTTGACGCCCAAATTAT+TGG | + | chr1_3:16936896-16936915 | None:intergenic | 40.0% | |
| ! | ATCCGGAAGCATGTGAATTT+CGG | - | chr1_3:16936920-16936939 | Msa0107010:intron | 40.0% |
| CATGTGAATTTCGGTGACTT+AGG | - | chr1_3:16936929-16936948 | Msa0107010:intron | 40.0% | |
| ! | AGGTGCTTGGGAGTTAATTT+TGG | + | chr1_3:16937515-16937534 | None:intergenic | 40.0% |
| !! | TAAAGTCGATAGGTTGGTGA+AGG | + | chr1_3:16937561-16937580 | None:intergenic | 40.0% |
| TCTTGTCCTTCAGCAAAAGA+CGG | - | chr1_3:16937686-16937705 | Msa0107010:intron | 40.0% | |
| ATCTGAACTGATCTCATCAG+TGG | + | chr1_3:16937720-16937739 | None:intergenic | 40.0% | |
| TGATGAGATCAGTTCAGATG+AGG | - | chr1_3:16937721-16937740 | Msa0107010:intron | 40.0% | |
| AAATGCCAAAGCAAGCTCAA+AGG | - | chr1_3:16937747-16937766 | Msa0107010:intron | 40.0% | |
| ! | ATTGTCCTTTGAGCTTGCTT+TGG | + | chr1_3:16937755-16937774 | None:intergenic | 40.0% |
| CTTCTTGAGATTTCTCCGTT+TGG | - | chr1_3:16938299-16938318 | Msa0107010:intron | 40.0% | |
| CAACATTACAACGTCTACCA+AGG | - | chr1_3:16938553-16938572 | Msa0107010:intron | 40.0% | |
| GTCAACCTATCATTGCTCTT+TGG | + | chr1_3:16938756-16938775 | None:intergenic | 40.0% | |
| ATGGAACGACGAAATGCAAA+TGG | + | chr1_3:16938915-16938934 | None:intergenic | 40.0% | |
| GACGATTCCAAAGGAATATG+TGG | - | chr1_3:16939393-16939412 | Msa0107010:intron | 40.0% | |
| !! | GTAGATGCTCTAAGGAGTAT+TGG | + | chr1_3:16939445-16939464 | None:intergenic | 40.0% |
| ! | ACTCCTTAGAGCATCTACAA+TGG | - | chr1_3:16939447-16939466 | Msa0107010:intron | 40.0% |
| CTACCATTGTAGATGCTCTA+AGG | + | chr1_3:16939453-16939472 | None:intergenic | 40.0% | |
| GAATTTCCATGTGGCAATGA+TGG | + | chr1_3:16939511-16939530 | None:intergenic | 40.0% | |
| CGGTTCTTCCTAAAGAACAT+TGG | + | chr1_3:16939621-16939640 | None:intergenic | 40.0% | |
| TCTTATGACCACAGGAACAT+AGG | - | chr1_3:16939699-16939718 | Msa0107010:intron | 40.0% | |
| TGTTCTATCCTATGTTCCTG+TGG | + | chr1_3:16939710-16939729 | None:intergenic | 40.0% | |
| GTTGCTCTTAGACTCTCAAA+TGG | - | chr1_3:16939738-16939757 | Msa0107010:intron | 40.0% | |
| CAATCTCAAAGGCCAAGAAA+TGG | - | chr1_3:16940025-16940044 | Msa0107010:intron | 40.0% | |
| !!! | GTTTTGGCTTTGATGTAAGG+GGG | + | chr1_3:16940093-16940112 | None:intergenic | 40.0% |
| ! | AAACGGGGCCTAAATTGTTT+TGG | + | chr1_3:16940109-16940128 | None:intergenic | 40.0% |
| AAAACAATTTAGGCCCCGTT+TGG | - | chr1_3:16940108-16940127 | Msa0107010:intron | 40.0% | |
| AGAGAGAAAAAGGAAGAGAG+AGG | + | chr1_3:16940578-16940597 | None:intergenic | 40.0% | |
| CAACTTATGTAGCACTTGCA+TGG | + | chr1_3:16940706-16940725 | None:intergenic | 40.0% | |
| TCTATATTTAAGGGTGGGCA+TGG | - | chr1_3:16940812-16940831 | Msa0107010:intron | 40.0% | |
| ! | CGGTTCGATTTGAAACAGTT+TGG | + | chr1_3:16940929-16940948 | None:intergenic | 40.0% |
| AATTCAACGACATCGACCTT+CGG | + | chr1_3:16941109-16941128 | None:intergenic | 40.0% | |
| ! | TCCGATCCCAATGCAATTTT+CGG | - | chr1_3:16941137-16941156 | Msa0107010:intron | 40.0% |
| TCCGAAAATTGCATTGGGAT+CGG | + | chr1_3:16941141-16941160 | None:intergenic | 40.0% | |
| TACCAACTGAGCTAAGCTAA+CGG | + | chr1_3:16941267-16941286 | None:intergenic | 40.0% | |
| ! | TTAGCTTAGCTCAGTTGGTA+GGG | - | chr1_3:16941267-16941286 | Msa0107010:intron | 40.0% |
| CATATTATATGCATGAGCCG+AGG | - | chr1_3:16941296-16941315 | Msa0107010:intron | 40.0% | |
| GGTAAATGACGAGATCGATT+GGG | + | chr1_3:16941720-16941739 | None:intergenic | 40.0% | |
| AGGTAAATGACGAGATCGAT+TGG | + | chr1_3:16941721-16941740 | None:intergenic | 40.0% | |
| AACGAGAGATCAATCGGAAA+AGG | + | chr1_3:16941741-16941760 | None:intergenic | 40.0% | |
| ACCGTTGCATCTCTAATCAT+TGG | + | chr1_3:16941769-16941788 | None:intergenic | 40.0% | |
| CGGTGAAGATAGACTTCAAT+TGG | - | chr1_3:16941785-16941804 | Msa0107010:intron | 40.0% | |
| !! | GTGAAAGAAAACGCTGATTC+CGG | - | chr1_3:16941810-16941829 | Msa0107010:intron | 40.0% |
| TCATCTTCATCCAACAGACA+TGG | - | chr1_3:16941879-16941898 | Msa0107010:intron | 40.0% | |
| TCTGTGTTCTGCATGTGAAA+TGG | - | chr1_3:16942417-16942436 | Msa0107010:intron | 40.0% | |
| ATGGCAGATTAAGGGATCAA+AGG | - | chr1_3:16942828-16942847 | Msa0107010:intron | 40.0% | |
| TGGCAGATTAAGGGATCAAA+GGG | - | chr1_3:16942829-16942848 | Msa0107010:intron | 40.0% | |
| !! | TGGTGTTACTACTTTGGTGT+TGG | + | chr1_3:16943018-16943037 | None:intergenic | 40.0% |
| !! | GTTCAGTCTGTTTTTCTCTC+AGG | + | chr1_3:16943190-16943209 | None:intergenic | 40.0% |
| GATGCTAGTGAGTGAGTATT+GGG | + | chr1_3:16943249-16943268 | None:intergenic | 40.0% | |
| TGATGCTAGTGAGTGAGTAT+TGG | + | chr1_3:16943250-16943269 | None:intergenic | 40.0% | |
| GAGGGTTCCTAAGATATATG+TGG | - | chr1_3:16943452-16943471 | Msa0107010:intron | 40.0% | |
| ATGATGAAGCCACAGAAGAA+GGG | - | chr1_3:16943757-16943776 | Msa0107010:intron | 40.0% | |
| ACTTTCTTTCCCTTCTTCTG+TGG | + | chr1_3:16943814-16943833 | None:intergenic | 40.0% | |
| AAATGGCAAAGCAAGCTCAA+AGG | - | chr1_3:16943868-16943887 | Msa0107010:CDS | 40.0% | |
| CAAGCTCAAAGGACAAGAAA+TGG | - | chr1_3:16943879-16943898 | Msa0107010:intron | 40.0% | |
| CTTTGCAGGTAGTAACAAAG+TGG | - | chr1_3:16944348-16944367 | Msa0107010:intron | 40.0% | |
| !! | TTTTCTAGCCTTCTTCACCA+TGG | + | chr1_3:16933484-16933503 | None:intergenic | 40.0% |
| TCATTAACAGCTTCGGATGT+TGG | + | chr1_3:16944400-16944419 | None:intergenic | 40.0% | |
| GGGATTCTCATTAACAGCTT+CGG | + | chr1_3:16933517-16933536 | None:intergenic | 40.0% | |
| ATGACACAATCTTACGCCAA+TGG | - | chr1_3:16944442-16944461 | Msa0107010:intron | 40.0% | |
| ACTTACCAAGTGATAGCCAT+TGG | + | chr1_3:16944461-16944480 | None:intergenic | 40.0% | |
| GGAACCACTGTTTCAAATCA+TGG | + | chr1_3:16944536-16944555 | None:intergenic | 40.0% | |
| !! | AGTTGGTAATGAAAGGAGTG+TGG | - | chr1_3:16944611-16944630 | Msa0107010:intron | 40.0% |
| ! | TAATGAAAGGAGTGTGGAAG+TGG | - | chr1_3:16944617-16944636 | Msa0107010:intron | 40.0% |
| ! | AATGAAAGGAGTGTGGAAGT+GGG | - | chr1_3:16944618-16944637 | Msa0107010:intron | 40.0% |
| ! | TCCCATACAAGAGTTTTCCT+TGG | + | chr1_3:16944661-16944680 | None:intergenic | 40.0% |
| AAGGAAAACTCTTGTATGGG+AGG | - | chr1_3:16944660-16944679 | Msa0107010:intron | 40.0% | |
| GAGGTGGTTGGAAAATATTC+AGG | - | chr1_3:16944679-16944698 | Msa0107010:intron | 40.0% | |
| ! | TTTCTTTGGGCTTGGTTTCT+TGG | + | chr1_3:16944793-16944812 | None:intergenic | 40.0% |
| CCTAGTAATTTCTTTGGGCT+TGG | + | chr1_3:16944801-16944820 | None:intergenic | 40.0% | |
| CCAAGCCCAAAGAAATTACT+AGG | - | chr1_3:16944798-16944817 | Msa0107010:CDS | 40.0% | |
| ACTTCTATGAGCCATCCAAA+AGG | - | chr1_3:16944985-16945004 | Msa0107010:intron | 40.0% | |
| ! | CCTCTTTTCATGAACTCCTT+TGG | + | chr1_3:16945673-16945692 | None:intergenic | 40.0% |
| CCAAAGGAGTTCATGAAAAG+AGG | - | chr1_3:16945670-16945689 | Msa0107010:CDS | 40.0% | |
| CTTGGAGAACAAACAGCTAA+TGG | + | chr1_3:16945904-16945923 | None:intergenic | 40.0% | |
| !! | ATGCTCAGCTAATGGATTCT+TGG | + | chr1_3:16945922-16945941 | None:intergenic | 40.0% |
| AGGTTGTAACAAAGTGGCCA+TGG | - | chr1_3:16933464-16933483 | Msa0107010:intron | 45.0% | |
| ! | TGGTAATGAAAGGAGTGTGG+AGG | - | chr1_3:16933724-16933743 | Msa0107010:intron | 45.0% |
| ! | GATCTTGTTTGAGTGGTGGT+TGG | - | chr1_3:16933777-16933796 | Msa0107010:intron | 45.0% |
| !! | CTTTGGGATTGCTTCGTTTC+CGG | + | chr1_3:16933903-16933922 | None:intergenic | 45.0% |
| !! | ATGAAAGTATTCGTGGCTGC+AGG | - | chr1_3:16934594-16934613 | Msa0107010:intron | 45.0% |
| AAAGCATGCAGAGTGGAGAT+TGG | - | chr1_3:16934644-16934663 | Msa0107010:intron | 45.0% | |
| TGAGCTCATGTGAAATGGAC+CGG | - | chr1_3:16934962-16934981 | Msa0107010:CDS | 45.0% | |
| CGCGACACACGTAATTATAG+AGG | + | chr1_3:16935072-16935091 | None:intergenic | 45.0% | |
| !! | AGTGTTGTTTGGGAGTTTGG+AGG | - | chr1_3:16935282-16935301 | Msa0107010:intron | 45.0% |
| !! | GTGTTGTTTGGGAGTTTGGA+GGG | - | chr1_3:16935283-16935302 | Msa0107010:intron | 45.0% |
| TAGGAGGGGAGAACTTTGAA+GGG | + | chr1_3:16935551-16935570 | None:intergenic | 45.0% | |
| TTAGGAGGGGAGAACTTTGA+AGG | + | chr1_3:16935552-16935571 | None:intergenic | 45.0% | |
| GGAGTTTGAACAGGAATGGA+GGG | + | chr1_3:16935616-16935635 | None:intergenic | 45.0% | |
| TCTTTCTCCTTCGTTCATCG+AGG | - | chr1_3:16936524-16936543 | Msa0107010:intron | 45.0% | |
| GTGATTTCGTCGTCTAAGTG+CGG | - | chr1_3:16936667-16936686 | Msa0107010:intron | 45.0% | |
| ! | TTTGATTTCGCGTCTTGTCG+CGG | - | chr1_3:16936719-16936738 | Msa0107010:intron | 45.0% |
| CACCGAAATTCACATGCTTC+CGG | + | chr1_3:16936925-16936944 | None:intergenic | 45.0% | |
| TGAAGTGAGGTTAGGTGCTT+GGG | + | chr1_3:16937527-16937546 | None:intergenic | 45.0% | |
| GGCTAAGGCTTAAAGAAGTG+AGG | + | chr1_3:16937628-16937647 | None:intergenic | 45.0% | |
| ! | TCTTCACCGTCTTTTGCTGA+AGG | + | chr1_3:16937695-16937714 | None:intergenic | 45.0% |
| TGAGATCAGTTCAGATGAGG+TGG | - | chr1_3:16937724-16937743 | Msa0107010:intron | 45.0% | |
| TTGAGATTTCTCCGTTTGGC+TGG | - | chr1_3:16938303-16938322 | Msa0107010:intron | 45.0% | |
| AGGGACTAAAACCAGCCAAA+CGG | + | chr1_3:16938317-16938336 | None:intergenic | 45.0% | |
| CAATATGACTTCCTTGGCTC+TGG | - | chr1_3:16938452-16938471 | Msa0107010:intron | 45.0% | |
| CTTGTTGCAGACGATTCCAA+AGG | - | chr1_3:16939384-16939403 | Msa0107010:intron | 45.0% | |
| ATTGGAGAACACTGACGTGA+AGG | + | chr1_3:16939603-16939622 | None:intergenic | 45.0% | |
| AACATGCTCGTACTCAATCG+TGG | + | chr1_3:16940380-16940399 | None:intergenic | 45.0% | |
| CGATTGAGTACGAGCATGTT+TGG | - | chr1_3:16940380-16940399 | Msa0107010:intron | 45.0% | |
| ! | TTTTAATCGCTTGAGCCCGA+AGG | - | chr1_3:16941090-16941109 | Msa0107010:intron | 45.0% |
| ATTCAACGACATCGACCTTC+GGG | + | chr1_3:16941108-16941127 | None:intergenic | 45.0% | |
| ACCAACTGAGCTAAGCTAAC+GGG | + | chr1_3:16941266-16941285 | None:intergenic | 45.0% | |
| ! | GTTAGCTTAGCTCAGTTGGT+AGG | - | chr1_3:16941266-16941285 | Msa0107010:intron | 45.0% |
| TTGTGGAGAAGTTGAGTGTC+CGG | + | chr1_3:16941330-16941349 | None:intergenic | 45.0% | |
| TGAAGAGTGAAGACTGAGTG+TGG | + | chr1_3:16941564-16941583 | None:intergenic | 45.0% | |
| GATGGAGAAGAAGAAGCTGA+AGG | + | chr1_3:16941678-16941697 | None:intergenic | 45.0% | |
| GGATCAAAGGGAAAGACACA+CGG | - | chr1_3:16942841-16942860 | Msa0107010:intron | 45.0% | |
| !! | AGTGAGTGAGTATTGGGCTA+AGG | + | chr1_3:16943243-16943262 | None:intergenic | 45.0% |
| GATGATGAAGCCACAGAAGA+AGG | - | chr1_3:16943756-16943775 | Msa0107010:intron | 45.0% | |
| AGGTAGTAACAAAGTGGCCA+TGG | - | chr1_3:16944354-16944373 | Msa0107010:intron | 45.0% | |
| TTACGCCAATGGCTATCACT+TGG | - | chr1_3:16944453-16944472 | Msa0107010:intron | 45.0% | |
| GGGACTGCAACAATAAGAGT+TGG | - | chr1_3:16944594-16944613 | Msa0107010:intron | 45.0% | |
| GAAAACTCTTGTATGGGAGG+TGG | - | chr1_3:16944663-16944682 | Msa0107010:intron | 45.0% | |
| TTTGGTGAAGAACACAGACC+CGG | - | chr1_3:16945550-16945569 | Msa0107010:CDS | 45.0% | |
| TTGTGGAGTTGAAAATGGGG+AGG | - | chr1_3:16945707-16945726 | Msa0107010:intron | 45.0% | |
| TGAAAATGGGGAGGAAGTCA+TGG | - | chr1_3:16945716-16945735 | Msa0107010:intron | 45.0% | |
| TCATGGCTGCAGATTCAGTA+AGG | - | chr1_3:16945768-16945787 | Msa0107010:intron | 45.0% | |
| CATGGCTGCAGATTCAGTAA+GGG | - | chr1_3:16945769-16945788 | Msa0107010:intron | 45.0% | |
| !!! | ATAATTTGTTTTAAAAAAAT+TGG | - | chr1_3:16939804-16939823 | Msa0107010:intron | 5.0% |
| !!! | TAATTTGTTTTAAAAAAATT+GGG | - | chr1_3:16939805-16939824 | Msa0107010:intron | 5.0% |
| !!! | TATTTTATACAAAATTATAA+TGG | + | chr1_3:16940433-16940452 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTAATATTTTCAA+TGG | + | chr1_3:16940979-16940998 | None:intergenic | 5.0% |
| !!! | AAAATAAATAAATTTTCATT+TGG | - | chr1_3:16941511-16941530 | Msa0107010:intron | 5.0% |
| !! | TATGATAAAAATTATATATT+TGG | - | chr1_3:16944233-16944252 | Msa0107010:CDS | 5.0% |
| !!! | TTAAATTTTATAATTGTAAA+TGG | - | chr1_3:16945048-16945067 | Msa0107010:CDS | 5.0% |
| !!! | TAAATTTTATAATTGTAAAT+GGG | - | chr1_3:16945049-16945068 | Msa0107010:CDS | 5.0% |
| !!! | CATATATATAATTTTTAATT+TGG | - | chr1_3:16945112-16945131 | Msa0107010:CDS | 5.0% |
| CAAAGTGGCCATGGTGAAGA+AGG | - | chr1_3:16933473-16933492 | Msa0107010:intron | 50.0% | |
| !! | GGAGTGTGGAGGTTAGTTTG+AGG | - | chr1_3:16933735-16933754 | Msa0107010:intron | 50.0% |
| TTTGGTGAAGAACACAGCCC+CGG | - | chr1_3:16934384-16934403 | Msa0107010:intron | 50.0% | |
| AGTATTCGTGGCTGCAGGTT+CGG | - | chr1_3:16934599-16934618 | Msa0107010:intron | 50.0% | |
| ! | GCTGCAGGTTCGGTAAAGAT+TGG | - | chr1_3:16934609-16934628 | Msa0107010:intron | 50.0% |
| CTCATGTGAAATGGACCGGA+CGG | - | chr1_3:16934966-16934985 | Msa0107010:CDS | 50.0% | |
| GTCGCGATATCTGACACATG+TGG | - | chr1_3:16935086-16935105 | Msa0107010:CDS | 50.0% | |
| GGGAGTTTGAACAGGAATGG+AGG | + | chr1_3:16935617-16935636 | None:intergenic | 50.0% | |
| ! | TGTGTGCAGTGTTGGACTGT+TGG | - | chr1_3:16936033-16936052 | Msa0107010:intron | 50.0% |
| GGATTATCAAGCAAGCAGGG+TGG | - | chr1_3:16936054-16936073 | Msa0107010:intron | 50.0% | |
| AATGTGTGGCCCAGATGCAA+TGG | + | chr1_3:16936107-16936126 | None:intergenic | 50.0% | |
| ACAGGCATGCATGCTTGCTT+GGG | + | chr1_3:16936230-16936249 | None:intergenic | 50.0% | |
| AACAGGCATGCATGCTTGCT+TGG | + | chr1_3:16936231-16936250 | None:intergenic | 50.0% | |
| TTCTCCTTCGTTCATCGAGG+AGG | - | chr1_3:16936527-16936546 | Msa0107010:intron | 50.0% | |
| TCTCCTTCGTTCATCGAGGA+GGG | - | chr1_3:16936528-16936547 | Msa0107010:intron | 50.0% | |
| GTGAAGTGAGGTTAGGTGCT+TGG | + | chr1_3:16937528-16937547 | None:intergenic | 50.0% | |
| GGAAGAACCGTTCTCCAACA+TGG | - | chr1_3:16939631-16939650 | Msa0107010:intron | 50.0% | |
| GTGGATGCCATGTTGGAGAA+CGG | + | chr1_3:16939641-16939660 | None:intergenic | 50.0% | |
| GAATGACGTGGATGCCATGT+TGG | + | chr1_3:16939648-16939667 | None:intergenic | 50.0% | |
| TCCACGTCATTCCACTCCAA+TGG | - | chr1_3:16939656-16939675 | Msa0107010:intron | 50.0% | |
| ACCATTGGAGTGGAATGACG+TGG | + | chr1_3:16939660-16939679 | None:intergenic | 50.0% | |
| CCAACTGAGCTAAGCTAACG+GGG | + | chr1_3:16941265-16941284 | None:intergenic | 50.0% | |
| TGTGGAGAAGTTGAGTGTCC+GGG | + | chr1_3:16941329-16941348 | None:intergenic | 50.0% | |
| !! | AATGAGTACAGAGAGCGCCA+TGG | + | chr1_3:16941623-16941642 | None:intergenic | 50.0% |
| CGAAGGAGGATGAGAATGGA+TGG | + | chr1_3:16941696-16941715 | None:intergenic | 50.0% | |
| ! | TCAGTTTTCTCTTCCGCTGC+CGG | + | chr1_3:16941832-16941851 | None:intergenic | 50.0% |
| AACGACACTGCCATGTCTGT+TGG | + | chr1_3:16941892-16941911 | None:intergenic | 50.0% | |
| GAGCTTGGCTGAACTGCAAT+CGG | + | chr1_3:16941918-16941937 | None:intergenic | 50.0% | |
| GGCTAAGGCTTAGAGAAGTG+AGG | + | chr1_3:16943228-16943247 | None:intergenic | 50.0% | |
| ! | ACTTGACTCGCCTTCTTCAG+TGG | + | chr1_3:16943736-16943755 | None:intergenic | 50.0% |
| CAAAGTGGCCATGGTGAAGA+AGG | - | chr1_3:16933473-16933492 | Msa0107010:intron | 50.0% | |
| ! | GGAGTGTGGAAGTGGGTTTA+AGG | - | chr1_3:16944625-16944644 | Msa0107010:intron | 50.0% |
| ACTCTTGTATGGGAGGTGGT+TGG | - | chr1_3:16944667-16944686 | Msa0107010:intron | 50.0% | |
| GCTGCAGATTCAGTAAGGGA+TGG | - | chr1_3:16945773-16945792 | Msa0107010:intron | 50.0% | |
| ! | GGTGCTGAAGCCACTGAAGA+AGG | - | chr1_3:16932981-16933000 | Msa0107010:intron | 55.0% |
| AAGCAAGCAGGGTGGCACTT+TGG | - | chr1_3:16936062-16936081 | Msa0107010:intron | 55.0% | |
| ! | TGTCACCGTGCCATTGCATC+TGG | - | chr1_3:16936094-16936113 | Msa0107010:intron | 55.0% |
| ! | GTCACCGTGCCATTGCATCT+GGG | - | chr1_3:16936095-16936114 | Msa0107010:intron | 55.0% |
| CAGGCATGCATGCTTGCTTG+GGG | + | chr1_3:16936229-16936248 | None:intergenic | 55.0% | |
| CTCCTTCGTTCATCGAGGAG+GGG | - | chr1_3:16936529-16936548 | Msa0107010:intron | 55.0% | |
| ! | CATCGAGGAGGGGTGGTTTT+AGG | - | chr1_3:16936539-16936558 | Msa0107010:intron | 55.0% |
| GGGCGTCAACGTTGAAGATC+CGG | - | chr1_3:16936903-16936922 | Msa0107010:intron | 55.0% | |
| GTGGGTCCATCATTGCCACA+TGG | - | chr1_3:16939502-16939521 | Msa0107010:intron | 55.0% | |
| ! | CCCCGTTAGCTTAGCTCAGT+TGG | - | chr1_3:16941262-16941281 | Msa0107010:intron | 55.0% |
| GTGGAGAAGTTGAGTGTCCG+GGG | + | chr1_3:16941328-16941347 | None:intergenic | 55.0% | |
| GGGACGAAGGAGGATGAGAA+TGG | + | chr1_3:16941700-16941719 | None:intergenic | 55.0% | |
| GAGATCGATTGGGACGAAGG+AGG | + | chr1_3:16941710-16941729 | None:intergenic | 55.0% | |
| GACGAGATCGATTGGGACGA+AGG | + | chr1_3:16941713-16941732 | None:intergenic | 55.0% | |
| !! | GAAAACGCTGATTCCGGCAG+CGG | - | chr1_3:16941816-16941835 | Msa0107010:intron | 55.0% |
| TGCAGTTCAGCCAAGCTCAG+CGG | - | chr1_3:16941920-16941939 | Msa0107010:intron | 55.0% | |
| AGCCAAGCTCAGCGGCAATT+CGG | - | chr1_3:16941928-16941947 | Msa0107010:intron | 55.0% | |
| TACCGAATTGCCGCTGAGCT+TGG | + | chr1_3:16941933-16941952 | None:intergenic | 55.0% | |
| AGCTCAGCGGCAATTCGGTA+AGG | - | chr1_3:16941933-16941952 | Msa0107010:intron | 55.0% | |
| ! | GGTGCTGAAGCCACTGAAGA+AGG | - | chr1_3:16932981-16933000 | Msa0107010:intron | 55.0% |
| GTGAAGAACACAGACCCGGT+AGG | - | chr1_3:16945554-16945573 | Msa0107010:CDS | 55.0% | |
| GTGAAGAACACAGCCCCGGT+AGG | - | chr1_3:16934388-16934407 | Msa0107010:intron | 60.0% | |
| GTGGCCCAGATGCAATGGCA+CGG | + | chr1_3:16936102-16936121 | None:intergenic | 60.0% | |
| CACCCCTCCTCGATGAACGA+AGG | + | chr1_3:16936534-16936553 | None:intergenic | 60.0% | |
| CTTCGTTCATCGAGGAGGGG+TGG | - | chr1_3:16936532-16936551 | Msa0107010:intron | 60.0% | |
| ATGAGCCGAGGTTCGAACCC+CGG | - | chr1_3:16941308-16941327 | Msa0107010:intron | 60.0% | |
| AGTGTCCGGGGTTCGAACCT+CGG | + | chr1_3:16941316-16941335 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 16932552 | 16946069 | 16932552 | ID=Msa0107010;Name=Msa0107010 |
| chr1_3 | mRNA | 16932552 | 16946069 | 16932552 | ID=Msa0107010-mRNA-1;Parent=Msa0107010;Name=Msa0107010-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.5|0.29|1|0.75|0.70|17|136|755 |
| chr1_3 | exon | 16932552 | 16932957 | 16932552 | ID=Msa0107010-mRNA-1:exon:6411;Parent=Msa0107010-mRNA-1 |
| chr1_3 | exon | 16933050 | 16933108 | 16933050 | ID=Msa0107010-mRNA-1:exon:6410;Parent=Msa0107010-mRNA-1 |
| chr1_3 | exon | 16933600 | 16933695 | 16933600 | ID=Msa0107010-mRNA-1:exon:6409;Parent=Msa0107010-mRNA-1 |
| chr1_3 | exon | 16933802 | 16933920 | 16933802 | ID=Msa0107010-mRNA-1:exon:6408;Parent=Msa0107010-mRNA-1 |
| chr1_3 | exon | 16933975 | 16934072 | 16933975 | ID=Msa0107010-mRNA-1:exon:6407;Parent=Msa0107010-mRNA-1 |
| chr1_3 | exon | 16934147 | 16934265 | 16934147 | ID=Msa0107010-mRNA-1:exon:6406;Parent=Msa0107010-mRNA-1 |
| chr1_3 | exon | 16934670 | 16934906 | 16934670 | ID=Msa0107010-mRNA-1:exon:6405;Parent=Msa0107010-mRNA-1 |
| chr1_3 | exon | 16934949 | 16935168 | 16934949 | ID=Msa0107010-mRNA-1:exon:6404;Parent=Msa0107010-mRNA-1 |
| chr1_3 | exon | 16943862 | 16943892 | 16943862 | ID=Msa0107010-mRNA-1:exon:6403;Parent=Msa0107010-mRNA-1 |
| chr1_3 | exon | 16943913 | 16944121 | 16943913 | ID=Msa0107010-mRNA-1:exon:6402;Parent=Msa0107010-mRNA-1 |
| chr1_3 | exon | 16944216 | 16944274 | 16944216 | ID=Msa0107010-mRNA-1:exon:6401;Parent=Msa0107010-mRNA-1 |
| chr1_3 | exon | 16944689 | 16944847 | 16944689 | ID=Msa0107010-mRNA-1:exon:6400;Parent=Msa0107010-mRNA-1 |
| chr1_3 | exon | 16944857 | 16944962 | 16944857 | ID=Msa0107010-mRNA-1:exon:6399;Parent=Msa0107010-mRNA-1 |
| chr1_3 | exon | 16945037 | 16945155 | 16945037 | ID=Msa0107010-mRNA-1:exon:6398;Parent=Msa0107010-mRNA-1 |
| chr1_3 | exon | 16945490 | 16945703 | 16945490 | ID=Msa0107010-mRNA-1:exon:6397;Parent=Msa0107010-mRNA-1 |
| chr1_3 | exon | 16945815 | 16945910 | 16945815 | ID=Msa0107010-mRNA-1:exon:6396;Parent=Msa0107010-mRNA-1 |
| chr1_3 | exon | 16946013 | 16946069 | 16946013 | ID=Msa0107010-mRNA-1:exon:6395;Parent=Msa0107010-mRNA-1 |
| chr1_3 | CDS | 16946013 | 16946069 | 16946013 | ID=Msa0107010-mRNA-1:cds;Parent=Msa0107010-mRNA-1 |
| chr1_3 | CDS | 16945815 | 16945910 | 16945815 | ID=Msa0107010-mRNA-1:cds;Parent=Msa0107010-mRNA-1 |
| chr1_3 | CDS | 16945490 | 16945703 | 16945490 | ID=Msa0107010-mRNA-1:cds;Parent=Msa0107010-mRNA-1 |
| chr1_3 | CDS | 16945037 | 16945155 | 16945037 | ID=Msa0107010-mRNA-1:cds;Parent=Msa0107010-mRNA-1 |
| chr1_3 | CDS | 16944857 | 16944962 | 16944857 | ID=Msa0107010-mRNA-1:cds;Parent=Msa0107010-mRNA-1 |
| chr1_3 | CDS | 16944689 | 16944847 | 16944689 | ID=Msa0107010-mRNA-1:cds;Parent=Msa0107010-mRNA-1 |
| chr1_3 | CDS | 16944216 | 16944274 | 16944216 | ID=Msa0107010-mRNA-1:cds;Parent=Msa0107010-mRNA-1 |
| chr1_3 | CDS | 16943913 | 16944121 | 16943913 | ID=Msa0107010-mRNA-1:cds;Parent=Msa0107010-mRNA-1 |
| chr1_3 | CDS | 16943862 | 16943892 | 16943862 | ID=Msa0107010-mRNA-1:cds;Parent=Msa0107010-mRNA-1 |
| chr1_3 | CDS | 16934949 | 16935168 | 16934949 | ID=Msa0107010-mRNA-1:cds;Parent=Msa0107010-mRNA-1 |
| chr1_3 | CDS | 16934670 | 16934906 | 16934670 | ID=Msa0107010-mRNA-1:cds;Parent=Msa0107010-mRNA-1 |
| chr1_3 | CDS | 16934147 | 16934265 | 16934147 | ID=Msa0107010-mRNA-1:cds;Parent=Msa0107010-mRNA-1 |
| chr1_3 | CDS | 16933975 | 16934072 | 16933975 | ID=Msa0107010-mRNA-1:cds;Parent=Msa0107010-mRNA-1 |
| chr1_3 | CDS | 16933802 | 16933920 | 16933802 | ID=Msa0107010-mRNA-1:cds;Parent=Msa0107010-mRNA-1 |
| chr1_3 | CDS | 16933600 | 16933695 | 16933600 | ID=Msa0107010-mRNA-1:cds;Parent=Msa0107010-mRNA-1 |
| chr1_3 | CDS | 16933050 | 16933108 | 16933050 | ID=Msa0107010-mRNA-1:cds;Parent=Msa0107010-mRNA-1 |
| chr1_3 | CDS | 16932688 | 16932957 | 16932688 | ID=Msa0107010-mRNA-1:cds;Parent=Msa0107010-mRNA-1 |
| chr1_3 | three_prime_UTR | 16932552 | 16932687 | 16932552 | ID=Msa0107010-mRNA-1:three_prime_utr;Parent=Msa0107010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
