AlfalfaGEDB | Msa0107030

M. sativa cultivar zhongmu-4 / Msa0107030

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0107030	sp\|Q8L3W1\|VRN1_ARATH	23.585	318	207	10	26	313	22	333	1.65e-16	84.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0107030	A0A072U9K2	63.089	382	104	9	25	382	33	401	5.77e-146	439
Msa0107030	A0A072U9K2	65.217	92	25	2	313	398	174	264	2.15e-21	108
Msa0107030	A0A072U9K2	71.642	134	37	1	399	532	334	466	3.78e-55	203

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TFs/TRs:

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Gene ID	Type	Classification
Msa0107030	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0107030	MtrunA17_Chr1g0163141	87.500	160	19	1	25	184	10	168	7.58e-88	270
Msa0107030	MtrunA17_Chr6g0476171	57.025	242	65	7	328	532	2	241	3.72e-76	241
Msa0107030	MtrunA17_Chr6g0476171	75.000	148	33	2	185	329	2	148	4.29e-65	213
Msa0107030	MtrunA17_Chr6g0476181	73.750	160	34	2	25	184	1	152	5.33e-73	230
Msa0107030	MtrunA17_Chr1g0163131	40.328	305	137	9	25	315	33	306	1.86e-62	208
Msa0107030	MtrunA17_Chr1g0163131	44.048	84	45	1	449	532	221	302	1.01e-13	72.4
Msa0107030	MtrunA17_Chr1g0162161	61.728	162	42	2	23	184	1	142	4.03e-62	202
Msa0107030	MtrunA17_Chr1g0163101	61.250	160	40	2	25	184	32	169	1.32e-59	196
Msa0107030	MtrunA17_Chr1g0163081	59.375	160	40	3	23	182	3	137	1.32e-53	179
Msa0107030	MtrunA17_Chr1g0163121	54.375	160	42	2	25	184	10	138	4.16e-49	167

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0107030	AT3G18990.1	23.585	318	207	10	26	313	22	333	1.68e-17	84.7
Msa0107030	AT3G18990.2	22.956	318	209	9	26	313	22	333	1.98e-17	84.7

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Find 105 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAGAAAGCAGGCCTA+AGG	0.562718	1_3:-16972819	Msa0107030:intron
AAACAGTCCACTTAAAGAGT+TGG	0.543129	1_3:+16978346	None:intergenic
AAACTAAAAGATCTCCGCAT+CGG	0.638428	1_3:+16977690	None:intergenic
AACAATTAGAAGTGTTGGAG+AGG	0.604246	1_3:-16976490	Msa0107030:CDS
AAGAAGCATGGTATATTTAG+TGG	0.374789	1_3:-16973181	Msa0107030:CDS
AAGAGAACCGCCAACTCAAA+TGG	0.462516	1_3:-16977470	Msa0107030:CDS
AAGGAACATGACTTGAAAGT+TGG	0.470859	1_3:-16976387	Msa0107030:CDS
AAGGCAACAATTAGAAGTGT+TGG	0.504037	1_3:-16976495	Msa0107030:CDS
AAGGCAACAATTAGAAGTGT+TGG	0.542696	1_3:-16975341	Msa0107030:intron
AATCTGACCCTCCTTTGTAT+CGG	0.568734	1_3:+16977666	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAATAGAGCAAGAATGAAT+AGG	+	chr1_3:16972861-16972880	None:intergenic	30.0%
TTAATGCAGCAAAGTATACA+TGG	+	chr1_3:16973185-16973204	None:intergenic	30.0%
AAAACCAATGAGTTTCAACA+TGG	+	chr1_3:16973227-16973246	None:intergenic	30.0%
GATAATATGAGAGTGAAACT+AGG	+	chr1_3:16974123-16974142	None:intergenic	30.0%
AACTAGAAGAAGAGACATTT+AGG	-	chr1_3:16974429-16974448	Msa0107030:intron	30.0%
TATTCTTTCGAAAACCAACT+AGG	+	chr1_3:16974569-16974588	None:intergenic	30.0%
TACATGAATGAGTTATTGCA+AGG	-	chr1_3:16974587-16974606	Msa0107030:intron	30.0%
ACATGAATGAGTTATTGCAA+GGG	-	chr1_3:16974588-16974607	Msa0107030:intron	30.0%
ATAATATGAGAGTGAAGCTA+GGG	+	chr1_3:16975332-16975351	None:intergenic	30.0%
TAGCTTCACTCTCATATTAT+CGG	-	chr1_3:16975332-16975351	Msa0107030:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	16972714	16978414	16972714	ID=Msa0107030;Name=Msa0107030
chr1_3	mRNA	16972714	16978414	16972714	ID=Msa0107030-mRNA-1;Parent=Msa0107030;Name=Msa0107030-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0\|0\|0\|0.8\|1\|1\|10\|0\|571
chr1_3	exon	16978343	16978414	16978343	ID=Msa0107030-mRNA-1:exon:6421;Parent=Msa0107030-mRNA-1
chr1_3	exon	16977384	16977864	16977384	ID=Msa0107030-mRNA-1:exon:6420;Parent=Msa0107030-mRNA-1
chr1_3	exon	16976955	16977103	16976955	ID=Msa0107030-mRNA-1:exon:6419;Parent=Msa0107030-mRNA-1
chr1_3	exon	16976289	16976568	16976289	ID=Msa0107030-mRNA-1:exon:6418;Parent=Msa0107030-mRNA-1
chr1_3	exon	16975745	16975884	16975745	ID=Msa0107030-mRNA-1:exon:6417;Parent=Msa0107030-mRNA-1
chr1_3	exon	16975342	16975414	16975342	ID=Msa0107030-mRNA-1:exon:6416;Parent=Msa0107030-mRNA-1
chr1_3	exon	16973464	16973577	16973464	ID=Msa0107030-mRNA-1:exon:6415;Parent=Msa0107030-mRNA-1
chr1_3	exon	16973314	16973372	16973314	ID=Msa0107030-mRNA-1:exon:6414;Parent=Msa0107030-mRNA-1
chr1_3	exon	16973003	16973230	16973003	ID=Msa0107030-mRNA-1:exon:6413;Parent=Msa0107030-mRNA-1
chr1_3	exon	16972714	16972833	16972714	ID=Msa0107030-mRNA-1:exon:6412;Parent=Msa0107030-mRNA-1
chr1_3	CDS	16978343	16978414	16978343	ID=Msa0107030-mRNA-1:cds;Parent=Msa0107030-mRNA-1
chr1_3	CDS	16977384	16977864	16977384	ID=Msa0107030-mRNA-1:cds;Parent=Msa0107030-mRNA-1
chr1_3	CDS	16976955	16977103	16976955	ID=Msa0107030-mRNA-1:cds;Parent=Msa0107030-mRNA-1
chr1_3	CDS	16976289	16976568	16976289	ID=Msa0107030-mRNA-1:cds;Parent=Msa0107030-mRNA-1
chr1_3	CDS	16975745	16975884	16975745	ID=Msa0107030-mRNA-1:cds;Parent=Msa0107030-mRNA-1
chr1_3	CDS	16975342	16975414	16975342	ID=Msa0107030-mRNA-1:cds;Parent=Msa0107030-mRNA-1
chr1_3	CDS	16973464	16973577	16973464	ID=Msa0107030-mRNA-1:cds;Parent=Msa0107030-mRNA-1
chr1_3	CDS	16973314	16973372	16973314	ID=Msa0107030-mRNA-1:cds;Parent=Msa0107030-mRNA-1
chr1_3	CDS	16973003	16973230	16973003	ID=Msa0107030-mRNA-1:cds;Parent=Msa0107030-mRNA-1
chr1_3	CDS	16972714	16972833	16972714	ID=Msa0107030-mRNA-1:cds;Parent=Msa0107030-mRNA-1

Gene Sequence

>Msa0107030

ATGGAATTGGTTTTTCGCTCGACTTGTGCTCAATCACTTGGTCATACCAACTCTTTAAGTGGACTGTTTAAGATGATTCCAAGGAATTTTGGAGAGAGATATTGGAAAGATGTACCAAATCCAATATCTCTTAAACTTCCAAATGGGTCAGTGTGCAAAATGAATTGGGTGCAACGCAGCGATGGTATTTGGCTTCAAAATTGGAAGAGGTTTGCAAGTTTGCTCCGATGCGGAGATCTTTTAGTTTTCCGATACAAAGGAGGGTCAGATTTTCATGTCATTGTATTAGATGATAGTCAATTAGAAATTGACTATTCAAGTATGAGATGCAACGACGATCAAGAAAATACTAAAGAGAGTGATGATGATGATGATGACGACGACGATTATGAGTGTGTTGAGATTCCTAGTGACATTGAAAATACTAAAATTCCCCTCAAGAAAAAGAGAACCGCCAACTCAAATGGCATTGCTACTACTACTGTTACACCTCAACGGACTAACATTGACAAGAGAAAAACTAATATCAACGCAACCCAGCAAAAAGTTTCTGAGGCTAATGGAAACACAGGAGGCATGGGTAAGAAAGCTAAAAATGCACAAAAACTAAATGAGAGTAGTTGCGCCATTGAGCATCCCAATGAGAATCCTAGTTTCACTCTCATATTATCACCATATCACGTTGAAGGTGATAGAAGATTGGCGATACCTAGTTGGTTTTCGAAAGAATACATGAATGAGTTATTGCAAGGGAAGGCAACAATTAGAAGTGTTGGAGAGGACAGGGCATGGTACGTGACATTAAACTTTCATAAAAGCAAGAGTAGTTTTGTAATGACGCTTGGTTGGAAGTCATTTTCAAAGGAACATGACTTGAAAGTTGGTGATGTATGTAAAGTTGAGATGACGCAACGCGAACCACTATCATTCACAATTACTATTATCCCAACCACAAAGGAATCATGTCCAGAGCAGTTTCAAGAGGCTAATGGAAACAGGGATAAGAAATGCACAAAAACTGAAGATGTCAATGAGAGAAACTGCAAAAATTCTCATCCCAATGAGAACCCTAGCTTCACTCTCATATTATCGGCATGTCATGTTGAAGGTGATAATAGATTGGCGATACCTAGTTGGTTTTCGAAAGAATACATGAATGAGTTATTGCAAGGGAAGGCAACAATTAGAAGTGTTGAAAACCAAGGAGTCCAAGAAAAATCAGAGACAACACCCGTAAAAGATATAGAATATGCGGGCAGTTTTGGAGATGGAATTTCAAGGAGCTGCACAATAACACATGGTTTTAGGGATTCTGTAAGTCTGAATTTACATGAGATGTTCAAGGTTCTTATAACATCATCAGACAAGTTGGTTGTACTACCATGTGAGCTGTTGAAGAAGCATGGTATATTTAGTGGAAATTCCGTGGAGTTGAGAGTAGGGGAAGGAACATGGTTTGTAGAGGTGAATTATAATGAACATCTCGACTATGGTTGGTTCCCTAAAGGTTGGCAAGAATTTGTGAGAGATTGCAAAGTAAAGGCTGGAGACACTTGCTTGTTTGAGACGATTGATGTGCAAAATCATGTGTTCAAGAAAGCAGGCCTAAGGTATGATGCTTCCTCCAATTCTCAAGGTTCATCAAGACATTGCCTTCCTCGATCATCTTTAATCAAAGCTTCTTCAACCACAACATTAACAGTAAGCAACCTATGA

Protein sequence

>Msa0107030

MELVFRSTCAQSLGHTNSLSGLFKMIPRNFGERYWKDVPNPISLKLPNGSVCKMNWVQRSDGIWLQNWKRFASLLRCGDLLVFRYKGGSDFHVIVLDDSQLEIDYSSMRCNDDQENTKESDDDDDDDDDYECVEIPSDIENTKIPLKKKRTANSNGIATTTVTPQRTNIDKRKTNINATQQKVSEANGNTGGMGKKAKNAQKLNESSCAIEHPNENPSFTLILSPYHVEGDRRLAIPSWFSKEYMNELLQGKATIRSVGEDRAWYVTLNFHKSKSSFVMTLGWKSFSKEHDLKVGDVCKVEMTQREPLSFTITIIPTTKESCPEQFQEANGNRDKKCTKTEDVNERNCKNSHPNENPSFTLILSACHVEGDNRLAIPSWFSKEYMNELLQGKATIRSVENQGVQEKSETTPVKDIEYAGSFGDGISRSCTITHGFRDSVSLNLHEMFKVLITSSDKLVVLPCELLKKHGIFSGNSVELRVGEGTWFVEVNYNEHLDYGWFPKGWQEFVRDCKVKAGDTCLFETIDVQNHVFKKAGLRYDASSNSQGSSRHCLPRSSLIKASSTTTLTVSNL*