Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107090 | RHN78227.1 | 78.000 | 300 | 27 | 2 | 31 | 292 | 57 | 355 | 1.43e-143 | 418 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107090 | sp|Q8RYD1|REM16_ARATH | 24.691 | 243 | 147 | 5 | 32 | 249 | 70 | 301 | 1.31e-12 | 70.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107090 | A0A396JU70 | 78.000 | 300 | 27 | 2 | 31 | 292 | 57 | 355 | 6.81e-144 | 418 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0107090 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107090 | MtrunA17_Chr1g0163221 | 78.000 | 300 | 27 | 2 | 31 | 292 | 57 | 355 | 1.31e-147 | 418 |
| Msa0107090 | MtrunA17_Chr4g0067431 | 62.055 | 253 | 72 | 6 | 30 | 262 | 60 | 308 | 9.81e-97 | 288 |
| Msa0107090 | MtrunA17_Chr6g0467351 | 56.742 | 178 | 56 | 3 | 31 | 194 | 61 | 231 | 3.64e-61 | 194 |
| Msa0107090 | MtrunA17_Chr1g0163061 | 42.672 | 232 | 73 | 3 | 4 | 175 | 34 | 265 | 3.81e-37 | 133 |
| Msa0107090 | MtrunA17_Chr6g0467361 | 64.557 | 79 | 24 | 3 | 188 | 263 | 7 | 84 | 2.96e-24 | 94.0 |
| Msa0107090 | MtrunA17_Chr1g0163071 | 28.679 | 265 | 144 | 9 | 25 | 255 | 24 | 277 | 1.50e-21 | 92.4 |
| Msa0107090 | MtrunA17_Chr1g0208771 | 26.493 | 268 | 164 | 9 | 5 | 249 | 17 | 274 | 2.88e-21 | 93.2 |
| Msa0107090 | MtrunA17_Chr3g0131891 | 26.786 | 224 | 155 | 5 | 35 | 251 | 68 | 289 | 2.13e-19 | 86.7 |
| Msa0107090 | MtrunA17_Chr7g0233541 | 27.155 | 232 | 154 | 4 | 35 | 251 | 35 | 266 | 1.47e-18 | 84.0 |
| Msa0107090 | MtrunA17_Chr7g0233561 | 27.660 | 235 | 149 | 7 | 35 | 251 | 67 | 298 | 3.35e-17 | 80.5 |
| Msa0107090 | MtrunA17_Chr7g0233521 | 28.054 | 221 | 145 | 5 | 37 | 251 | 37 | 249 | 5.50e-17 | 79.3 |
| Msa0107090 | MtrunA17_Chr7g0233531 | 25.446 | 224 | 151 | 5 | 35 | 251 | 35 | 249 | 1.14e-16 | 78.2 |
| Msa0107090 | MtrunA17_Chr3g0103171 | 27.273 | 242 | 153 | 8 | 30 | 262 | 35 | 262 | 3.10e-15 | 73.9 |
| Msa0107090 | MtrunA17_Chr8g0390841 | 25.322 | 233 | 149 | 8 | 36 | 249 | 89 | 315 | 8.19e-15 | 74.3 |
| Msa0107090 | MtrunA17_Chr1g0163251 | 26.786 | 280 | 181 | 12 | 5 | 275 | 25 | 289 | 7.53e-14 | 71.2 |
| Msa0107090 | MtrunA17_Chr3g0103181 | 28.049 | 246 | 140 | 11 | 30 | 262 | 55 | 276 | 1.35e-13 | 69.7 |
| Msa0107090 | MtrunA17_Chr3g0103191 | 27.411 | 197 | 122 | 7 | 30 | 220 | 55 | 236 | 4.72e-13 | 67.8 |
| Msa0107090 | MtrunA17_Chr3g0103201 | 26.991 | 226 | 139 | 8 | 44 | 258 | 4 | 214 | 5.61e-13 | 67.0 |
| Msa0107090 | MtrunA17_Chr1g0163201 | 25.000 | 296 | 188 | 10 | 5 | 278 | 23 | 306 | 5.96e-13 | 68.6 |
| Msa0107090 | MtrunA17_Chr5g0429931 | 27.530 | 247 | 133 | 10 | 32 | 272 | 42 | 248 | 7.76e-13 | 67.0 |
| Msa0107090 | MtrunA17_Chr1g0154131 | 26.446 | 242 | 139 | 11 | 34 | 251 | 230 | 456 | 8.55e-13 | 68.2 |
| Msa0107090 | MtrunA17_Chr1g0163131 | 28.519 | 270 | 158 | 12 | 4 | 251 | 37 | 293 | 5.54e-12 | 65.1 |
| Msa0107090 | MtrunA17_Chr1g0154161 | 25.630 | 238 | 137 | 10 | 34 | 251 | 78 | 295 | 1.21e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107090 | AT4G33280.1 | 24.691 | 243 | 147 | 5 | 32 | 249 | 70 | 301 | 1.33e-13 | 70.5 |
Find 34 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTATCTTTGTCAACAAAA+AGG | 0.196489 | 1_3:-17049595 | None:intergenic |
| GAAGAGAATAATTTGAAATT+TGG | 0.198679 | 1_3:+17049680 | Msa0107090:CDS |
| CTCTATCAATGTATGACTTT+TGG | 0.220204 | 1_3:-17049204 | None:intergenic |
| CTTCATCATCACGGGTTAAA+AGG | 0.256061 | 1_3:+17048892 | Msa0107090:CDS |
| TTTGGAAACCTTAGAGTAAC+TGG | 0.256715 | 1_3:-17048622 | None:intergenic |
| AAGTAGTTGTGATGATATTA+AGG | 0.299219 | 1_3:+17049108 | Msa0107090:CDS |
| ACTTCTCAAATACAAGCTTT+TGG | 0.302395 | 1_3:-17049971 | None:intergenic |
| GTCTTTAATGTGATTGTATT+CGG | 0.330391 | 1_3:+17048780 | Msa0107090:CDS |
| TTCTTACAAACTTCCATAGA+TGG | 0.339692 | 1_3:-17048930 | None:intergenic |
| TAACAAACCCAGTTACTCTA+AGG | 0.363012 | 1_3:+17048614 | Msa0107090:CDS |
| ATTTCAAATTATTCTCTTCA+CGG | 0.368199 | 1_3:-17049676 | None:intergenic |
| GAGAAAATAACAACTTGAAA+TGG | 0.395512 | 1_3:-17049746 | None:intergenic |
| TGTTTCTTGACAAATTCATT+TGG | 0.414955 | 1_3:-17049539 | None:intergenic |
| CTTCCCTAGTTTCTCTTGAC+GGG | 0.422598 | 1_3:-17048827 | None:intergenic |
| TCTTCCCTAGTTTCTCTTGA+CGG | 0.433773 | 1_3:-17048828 | None:intergenic |
| TGAATTTGTCAAGAAACATA+TGG | 0.468376 | 1_3:+17049544 | Msa0107090:CDS |
| TCTAAGGTTTCCAAACATGA+TGG | 0.492653 | 1_3:+17048630 | Msa0107090:CDS |
| TGAGAACCCTTCATCATCAC+GGG | 0.503349 | 1_3:+17048884 | Msa0107090:CDS |
| CAAGAAACATATGGACATGA+TGG | 0.508763 | 1_3:+17049553 | Msa0107090:CDS |
| GGGTTGGCTTGAATTTGTGA+AGG | 0.511802 | 1_3:+17049905 | Msa0107090:intron |
| GGTTGGCTTGAATTTGTGAA+GGG | 0.512460 | 1_3:+17049906 | Msa0107090:CDS |
| AATACCCGTCAAGAGAAACT+AGG | 0.533719 | 1_3:+17048823 | Msa0107090:CDS |
| ATACATTGATAGAGATCGCT+TGG | 0.539899 | 1_3:+17049213 | Msa0107090:CDS |
| TTTGTGAAAAGGTATTGGAA+AGG | 0.553882 | 1_3:+17048589 | Msa0107090:CDS |
| TGATACTTGCCTATTGAAGA+TGG | 0.558738 | 1_3:+17049947 | Msa0107090:CDS |
| AATCTGCACTAACTTGTGGT+TGG | 0.573287 | 1_3:+17049645 | Msa0107090:CDS |
| TTGAGAACCCTTCATCATCA+CGG | 0.575621 | 1_3:+17048883 | Msa0107090:CDS |
| ATACCCGTCAAGAGAAACTA+GGG | 0.582374 | 1_3:+17048824 | Msa0107090:CDS |
| GTTGGCTTGAATTTGTGAAG+GGG | 0.584037 | 1_3:+17049907 | Msa0107090:CDS |
| AAACAATCTGCACTAACTTG+TGG | 0.589005 | 1_3:+17049641 | Msa0107090:CDS |
| AAACATATGGACATGATGGA+AGG | 0.599445 | 1_3:+17049557 | Msa0107090:CDS |
| GTGATTGTATTCGGTAGATG+CGG | 0.604317 | 1_3:+17048789 | Msa0107090:CDS |
| TTGGAAACCTTAGAGTAACT+GGG | 0.606122 | 1_3:-17048621 | None:intergenic |
| AAGCGTGAGCATGTGAACAA+TGG | 0.705898 | 1_3:+17048987 | Msa0107090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGATTTATGAAAAATTTA+TGG | + | chr1_3:17049826-17049845 | Msa0107090:intron | 10.0% |
| !! | TATGATTTATGAAAAATTTA+TGG | + | chr1_3:17049826-17049845 | Msa0107090:intron | 10.0% |
| !!! | TTTTTGCTACTAATTTTTTT+TGG | + | chr1_3:17049062-17049081 | Msa0107090:intron | 15.0% |
| !! | ATATAATTACCTTCAAAATA+AGG | - | chr1_3:17049794-17049813 | None:intergenic | 15.0% |
| !!! | TTTTTGCTACTAATTTTTTT+TGG | + | chr1_3:17049062-17049081 | Msa0107090:intron | 15.0% |
| !! | ATATAATTACCTTCAAAATA+AGG | - | chr1_3:17049794-17049813 | None:intergenic | 15.0% |
| !!! | AATGAAGTTATATTTTGCAA+TGG | + | chr1_3:17048684-17048703 | Msa0107090:CDS | 20.0% |
| !!! | TTTGAATGAATCACAATTTT+TGG | + | chr1_3:17048734-17048753 | Msa0107090:CDS | 20.0% |
| !!! | TGAATTCTTATTTTTTTAGC+AGG | + | chr1_3:17049085-17049104 | Msa0107090:intron | 20.0% |
| !! | AACTATATGTGTGTATTTAT+AGG | + | chr1_3:17049511-17049530 | Msa0107090:intron | 20.0% |
| !! | TTTATCTTTGTCAACAAAAA+GGG | - | chr1_3:17049597-17049616 | None:intergenic | 20.0% |
| !! | ATTTATCTTTGTCAACAAAA+AGG | - | chr1_3:17049598-17049617 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGACAAAGATAAA+TGG | + | chr1_3:17049597-17049616 | Msa0107090:CDS | 20.0% |
| !! | ATTTCAAATTATTCTCTTCA+CGG | - | chr1_3:17049679-17049698 | None:intergenic | 20.0% |
| !!! | GAAGAGAATAATTTGAAATT+TGG | + | chr1_3:17049680-17049699 | Msa0107090:CDS | 20.0% |
| !!! | AATGAAGTTATATTTTGCAA+TGG | + | chr1_3:17048684-17048703 | Msa0107090:CDS | 20.0% |
| !!! | TTTGAATGAATCACAATTTT+TGG | + | chr1_3:17048734-17048753 | Msa0107090:CDS | 20.0% |
| !!! | TGAATTCTTATTTTTTTAGC+AGG | + | chr1_3:17049085-17049104 | Msa0107090:intron | 20.0% |
| !! | AACTATATGTGTGTATTTAT+AGG | + | chr1_3:17049511-17049530 | Msa0107090:intron | 20.0% |
| !! | TTTATCTTTGTCAACAAAAA+GGG | - | chr1_3:17049597-17049616 | None:intergenic | 20.0% |
| !! | ATTTATCTTTGTCAACAAAA+AGG | - | chr1_3:17049598-17049617 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGACAAAGATAAA+TGG | + | chr1_3:17049597-17049616 | Msa0107090:CDS | 20.0% |
| !! | ATTTCAAATTATTCTCTTCA+CGG | - | chr1_3:17049679-17049698 | None:intergenic | 20.0% |
| !!! | GAAGAGAATAATTTGAAATT+TGG | + | chr1_3:17049680-17049699 | Msa0107090:CDS | 20.0% |
| !! | TACCTTTTCACAAAAGTTAT+GGG | - | chr1_3:17048583-17048602 | None:intergenic | 25.0% |
| !! | ATACCTTTTCACAAAAGTTA+TGG | - | chr1_3:17048584-17048603 | None:intergenic | 25.0% |
| !!! | TAACTTTTGTGAAAAGGTAT+TGG | + | chr1_3:17048584-17048603 | Msa0107090:CDS | 25.0% |
| !!! | ATGATGGAAAAGAAAGTTTT+TGG | + | chr1_3:17048646-17048665 | Msa0107090:CDS | 25.0% |
| !! | TGATGGAAAAGAAAGTTTTT+GGG | + | chr1_3:17048647-17048666 | Msa0107090:CDS | 25.0% |
| !! | AAGTTATATTTTGCAATGGT+TGG | + | chr1_3:17048688-17048707 | Msa0107090:CDS | 25.0% |
| ! | GTCTTTAATGTGATTGTATT+CGG | + | chr1_3:17048780-17048799 | Msa0107090:CDS | 25.0% |
| ! | AAGTAGTTGTGATGATATTA+AGG | + | chr1_3:17049108-17049127 | Msa0107090:CDS | 25.0% |
| ! | CCAATTATGGTATACTAATT+TGG | - | chr1_3:17049341-17049360 | None:intergenic | 25.0% |
| ! | CCAAATTAGTATACCATAAT+TGG | + | chr1_3:17049338-17049357 | Msa0107090:intron | 25.0% |
| ! | AATATAGCAAAGTCCAATTA+TGG | - | chr1_3:17049354-17049373 | None:intergenic | 25.0% |
| !!! | CTTTAAAAGTACCTACATAA+TGG | + | chr1_3:17049387-17049406 | Msa0107090:intron | 25.0% |
| ! | TGTTTCTTGACAAATTCATT+TGG | - | chr1_3:17049542-17049561 | None:intergenic | 25.0% |
| ! | TGAATTTGTCAAGAAACATA+TGG | + | chr1_3:17049544-17049563 | Msa0107090:CDS | 25.0% |
| ! | GAGAAAATAACAACTTGAAA+TGG | - | chr1_3:17049749-17049768 | None:intergenic | 25.0% |
| !!! | TCAAGTTGTTATTTTCTCTT+TGG | + | chr1_3:17049751-17049770 | Msa0107090:intron | 25.0% |
| !!! | TGTTATTTTCTCTTTGGAAA+AGG | + | chr1_3:17049757-17049776 | Msa0107090:intron | 25.0% |
| ! | CAATATAGTAATTCATGTGT+TGG | + | chr1_3:17049871-17049890 | Msa0107090:intron | 25.0% |
| !! | TACCTTTTCACAAAAGTTAT+GGG | - | chr1_3:17048583-17048602 | None:intergenic | 25.0% |
| !! | ATACCTTTTCACAAAAGTTA+TGG | - | chr1_3:17048584-17048603 | None:intergenic | 25.0% |
| !!! | TAACTTTTGTGAAAAGGTAT+TGG | + | chr1_3:17048584-17048603 | Msa0107090:CDS | 25.0% |
| !!! | ATGATGGAAAAGAAAGTTTT+TGG | + | chr1_3:17048646-17048665 | Msa0107090:CDS | 25.0% |
| !! | TGATGGAAAAGAAAGTTTTT+GGG | + | chr1_3:17048647-17048666 | Msa0107090:CDS | 25.0% |
| !! | AAGTTATATTTTGCAATGGT+TGG | + | chr1_3:17048688-17048707 | Msa0107090:CDS | 25.0% |
| ! | GTCTTTAATGTGATTGTATT+CGG | + | chr1_3:17048780-17048799 | Msa0107090:CDS | 25.0% |
| ! | AAGTAGTTGTGATGATATTA+AGG | + | chr1_3:17049108-17049127 | Msa0107090:CDS | 25.0% |
| ! | CCAATTATGGTATACTAATT+TGG | - | chr1_3:17049341-17049360 | None:intergenic | 25.0% |
| ! | CCAAATTAGTATACCATAAT+TGG | + | chr1_3:17049338-17049357 | Msa0107090:intron | 25.0% |
| ! | AATATAGCAAAGTCCAATTA+TGG | - | chr1_3:17049354-17049373 | None:intergenic | 25.0% |
| !!! | CTTTAAAAGTACCTACATAA+TGG | + | chr1_3:17049387-17049406 | Msa0107090:intron | 25.0% |
| ! | TGTTTCTTGACAAATTCATT+TGG | - | chr1_3:17049542-17049561 | None:intergenic | 25.0% |
| ! | TGAATTTGTCAAGAAACATA+TGG | + | chr1_3:17049544-17049563 | Msa0107090:CDS | 25.0% |
| ! | GAGAAAATAACAACTTGAAA+TGG | - | chr1_3:17049749-17049768 | None:intergenic | 25.0% |
| !!! | TCAAGTTGTTATTTTCTCTT+TGG | + | chr1_3:17049751-17049770 | Msa0107090:intron | 25.0% |
| !!! | TGTTATTTTCTCTTTGGAAA+AGG | + | chr1_3:17049757-17049776 | Msa0107090:intron | 25.0% |
| ! | CAATATAGTAATTCATGTGT+TGG | + | chr1_3:17049871-17049890 | Msa0107090:intron | 25.0% |
| !! | TTTGTGAAAAGGTATTGGAA+AGG | + | chr1_3:17048589-17048608 | Msa0107090:CDS | 30.0% |
| ! | ACTTTCTTTTCCATCATGTT+TGG | - | chr1_3:17048643-17048662 | None:intergenic | 30.0% |
| ! | AAAATTTTCAGCACCATCTA+TGG | + | chr1_3:17048917-17048936 | Msa0107090:CDS | 30.0% |
| TTCTTACAAACTTCCATAGA+TGG | - | chr1_3:17048933-17048952 | None:intergenic | 30.0% | |
| AAGAAACACAACATGATGAT+AGG | - | chr1_3:17049023-17049042 | None:intergenic | 30.0% | |
| !!! | CGAATTTTTTCTTCACTTTC+TGG | - | chr1_3:17049153-17049172 | None:intergenic | 30.0% |
| GAAAAAATTCGACTCTGATA+AGG | + | chr1_3:17049162-17049181 | Msa0107090:CDS | 30.0% | |
| ! | CTCTATCAATGTATGACTTT+TGG | - | chr1_3:17049207-17049226 | None:intergenic | 30.0% |
| !! | TGTGTTTTTGTGCTAAACAA+AGG | + | chr1_3:17049710-17049729 | Msa0107090:CDS | 30.0% |
| !!! | TTGGAAACTCCTTATTTTGA+AGG | + | chr1_3:17049782-17049801 | Msa0107090:intron | 30.0% |
| ! | ACTTCTCAAATACAAGCTTT+TGG | - | chr1_3:17049974-17049993 | None:intergenic | 30.0% |
| !! | TTTGTGAAAAGGTATTGGAA+AGG | + | chr1_3:17048589-17048608 | Msa0107090:CDS | 30.0% |
| ! | ACTTTCTTTTCCATCATGTT+TGG | - | chr1_3:17048643-17048662 | None:intergenic | 30.0% |
| ! | AAAATTTTCAGCACCATCTA+TGG | + | chr1_3:17048917-17048936 | Msa0107090:CDS | 30.0% |
| TTCTTACAAACTTCCATAGA+TGG | - | chr1_3:17048933-17048952 | None:intergenic | 30.0% | |
| AAGAAACACAACATGATGAT+AGG | - | chr1_3:17049023-17049042 | None:intergenic | 30.0% | |
| !!! | CGAATTTTTTCTTCACTTTC+TGG | - | chr1_3:17049153-17049172 | None:intergenic | 30.0% |
| GAAAAAATTCGACTCTGATA+AGG | + | chr1_3:17049162-17049181 | Msa0107090:CDS | 30.0% | |
| ! | CTCTATCAATGTATGACTTT+TGG | - | chr1_3:17049207-17049226 | None:intergenic | 30.0% |
| !! | TGTGTTTTTGTGCTAAACAA+AGG | + | chr1_3:17049710-17049729 | Msa0107090:CDS | 30.0% |
| !!! | TTGGAAACTCCTTATTTTGA+AGG | + | chr1_3:17049782-17049801 | Msa0107090:intron | 30.0% |
| ! | ACTTCTCAAATACAAGCTTT+TGG | - | chr1_3:17049974-17049993 | None:intergenic | 30.0% |
| ! | TGCCCATAACTTTTGTGAAA+AGG | + | chr1_3:17048578-17048597 | Msa0107090:CDS | 35.0% |
| TAACAAACCCAGTTACTCTA+AGG | + | chr1_3:17048614-17048633 | Msa0107090:CDS | 35.0% | |
| TTGGAAACCTTAGAGTAACT+GGG | - | chr1_3:17048624-17048643 | None:intergenic | 35.0% | |
| TTTGGAAACCTTAGAGTAAC+TGG | - | chr1_3:17048625-17048644 | None:intergenic | 35.0% | |
| ! | TCTAAGGTTTCCAAACATGA+TGG | + | chr1_3:17048630-17048649 | Msa0107090:CDS | 35.0% |
| !! | TTTTAACCCGTGATGATGAA+GGG | - | chr1_3:17048893-17048912 | None:intergenic | 35.0% |
| ATACATTGATAGAGATCGCT+TGG | + | chr1_3:17049213-17049232 | Msa0107090:CDS | 35.0% | |
| CCAATCACAATCCATTATGT+AGG | - | chr1_3:17049401-17049420 | None:intergenic | 35.0% | |
| !! | CCTACATAATGGATTGTGAT+TGG | + | chr1_3:17049398-17049417 | Msa0107090:intron | 35.0% |
| CAAGAAACATATGGACATGA+TGG | + | chr1_3:17049553-17049572 | Msa0107090:CDS | 35.0% | |
| ! | AAACATATGGACATGATGGA+AGG | + | chr1_3:17049557-17049576 | Msa0107090:CDS | 35.0% |
| AAACAATCTGCACTAACTTG+TGG | + | chr1_3:17049641-17049660 | Msa0107090:CDS | 35.0% | |
| ! | TTTCTCTTTGGAAAAGGACT+TGG | + | chr1_3:17049763-17049782 | Msa0107090:intron | 35.0% |
| TGATACTTGCCTATTGAAGA+TGG | + | chr1_3:17049947-17049966 | Msa0107090:CDS | 35.0% | |
| ! | TGCCCATAACTTTTGTGAAA+AGG | + | chr1_3:17048578-17048597 | Msa0107090:CDS | 35.0% |
| TAACAAACCCAGTTACTCTA+AGG | + | chr1_3:17048614-17048633 | Msa0107090:CDS | 35.0% | |
| TTGGAAACCTTAGAGTAACT+GGG | - | chr1_3:17048624-17048643 | None:intergenic | 35.0% | |
| TTTGGAAACCTTAGAGTAAC+TGG | - | chr1_3:17048625-17048644 | None:intergenic | 35.0% | |
| ! | TCTAAGGTTTCCAAACATGA+TGG | + | chr1_3:17048630-17048649 | Msa0107090:CDS | 35.0% |
| !! | TTTTAACCCGTGATGATGAA+GGG | - | chr1_3:17048893-17048912 | None:intergenic | 35.0% |
| ATACATTGATAGAGATCGCT+TGG | + | chr1_3:17049213-17049232 | Msa0107090:CDS | 35.0% | |
| CCAATCACAATCCATTATGT+AGG | - | chr1_3:17049401-17049420 | None:intergenic | 35.0% | |
| !! | CCTACATAATGGATTGTGAT+TGG | + | chr1_3:17049398-17049417 | Msa0107090:intron | 35.0% |
| CAAGAAACATATGGACATGA+TGG | + | chr1_3:17049553-17049572 | Msa0107090:CDS | 35.0% | |
| ! | AAACATATGGACATGATGGA+AGG | + | chr1_3:17049557-17049576 | Msa0107090:CDS | 35.0% |
| AAACAATCTGCACTAACTTG+TGG | + | chr1_3:17049641-17049660 | Msa0107090:CDS | 35.0% | |
| ! | TTTCTCTTTGGAAAAGGACT+TGG | + | chr1_3:17049763-17049782 | Msa0107090:intron | 35.0% |
| TGATACTTGCCTATTGAAGA+TGG | + | chr1_3:17049947-17049966 | Msa0107090:CDS | 35.0% | |
| GTGATTGTATTCGGTAGATG+CGG | + | chr1_3:17048789-17048808 | Msa0107090:CDS | 40.0% | |
| AATACCCGTCAAGAGAAACT+AGG | + | chr1_3:17048823-17048842 | Msa0107090:CDS | 40.0% | |
| ATACCCGTCAAGAGAAACTA+GGG | + | chr1_3:17048824-17048843 | Msa0107090:CDS | 40.0% | |
| TCTTCCCTAGTTTCTCTTGA+CGG | - | chr1_3:17048831-17048850 | None:intergenic | 40.0% | |
| TTGAGAACCCTTCATCATCA+CGG | + | chr1_3:17048883-17048902 | Msa0107090:CDS | 40.0% | |
| !! | CTTTTAACCCGTGATGATGA+AGG | - | chr1_3:17048894-17048913 | None:intergenic | 40.0% |
| ! | CTTCATCATCACGGGTTAAA+AGG | + | chr1_3:17048892-17048911 | Msa0107090:CDS | 40.0% |
| ! | AATCTGCACTAACTTGTGGT+TGG | + | chr1_3:17049645-17049664 | Msa0107090:CDS | 40.0% |
| !! | GGTTGGCTTGAATTTGTGAA+GGG | + | chr1_3:17049906-17049925 | Msa0107090:CDS | 40.0% |
| !! | GTTGGCTTGAATTTGTGAAG+GGG | + | chr1_3:17049907-17049926 | Msa0107090:CDS | 40.0% |
| ! | GCTTTTGGACCATCTTCAAT+AGG | - | chr1_3:17049959-17049978 | None:intergenic | 40.0% |
| GTGATTGTATTCGGTAGATG+CGG | + | chr1_3:17048789-17048808 | Msa0107090:CDS | 40.0% | |
| AATACCCGTCAAGAGAAACT+AGG | + | chr1_3:17048823-17048842 | Msa0107090:CDS | 40.0% | |
| ATACCCGTCAAGAGAAACTA+GGG | + | chr1_3:17048824-17048843 | Msa0107090:CDS | 40.0% | |
| TCTTCCCTAGTTTCTCTTGA+CGG | - | chr1_3:17048831-17048850 | None:intergenic | 40.0% | |
| TTGAGAACCCTTCATCATCA+CGG | + | chr1_3:17048883-17048902 | Msa0107090:CDS | 40.0% | |
| !! | CTTTTAACCCGTGATGATGA+AGG | - | chr1_3:17048894-17048913 | None:intergenic | 40.0% |
| ! | CTTCATCATCACGGGTTAAA+AGG | + | chr1_3:17048892-17048911 | Msa0107090:CDS | 40.0% |
| ! | AATCTGCACTAACTTGTGGT+TGG | + | chr1_3:17049645-17049664 | Msa0107090:CDS | 40.0% |
| !! | GGTTGGCTTGAATTTGTGAA+GGG | + | chr1_3:17049906-17049925 | Msa0107090:CDS | 40.0% |
| !! | GTTGGCTTGAATTTGTGAAG+GGG | + | chr1_3:17049907-17049926 | Msa0107090:CDS | 40.0% |
| ! | GCTTTTGGACCATCTTCAAT+AGG | - | chr1_3:17049959-17049978 | None:intergenic | 40.0% |
| CTTCCCTAGTTTCTCTTGAC+GGG | - | chr1_3:17048830-17048849 | None:intergenic | 45.0% | |
| TGAGAACCCTTCATCATCAC+GGG | + | chr1_3:17048884-17048903 | Msa0107090:CDS | 45.0% | |
| AAGCGTGAGCATGTGAACAA+TGG | + | chr1_3:17048987-17049006 | Msa0107090:CDS | 45.0% | |
| GTGAGCATGTGAACAATGGT+TGG | + | chr1_3:17048991-17049010 | Msa0107090:intron | 45.0% | |
| ATGTGTTGGACTATTGCGCA+GGG | + | chr1_3:17049885-17049904 | Msa0107090:intron | 45.0% | |
| !! | GGGTTGGCTTGAATTTGTGA+AGG | + | chr1_3:17049905-17049924 | Msa0107090:intron | 45.0% |
| CTTCCCTAGTTTCTCTTGAC+GGG | - | chr1_3:17048830-17048849 | None:intergenic | 45.0% | |
| TGAGAACCCTTCATCATCAC+GGG | + | chr1_3:17048884-17048903 | Msa0107090:CDS | 45.0% | |
| AAGCGTGAGCATGTGAACAA+TGG | + | chr1_3:17048987-17049006 | Msa0107090:CDS | 45.0% | |
| GTGAGCATGTGAACAATGGT+TGG | + | chr1_3:17048991-17049010 | Msa0107090:intron | 45.0% | |
| ATGTGTTGGACTATTGCGCA+GGG | + | chr1_3:17049885-17049904 | Msa0107090:intron | 45.0% | |
| !! | GGGTTGGCTTGAATTTGTGA+AGG | + | chr1_3:17049905-17049924 | Msa0107090:intron | 45.0% |
| CATGTGTTGGACTATTGCGC+AGG | + | chr1_3:17049884-17049903 | Msa0107090:intron | 50.0% | |
| CATGTGTTGGACTATTGCGC+AGG | + | chr1_3:17049884-17049903 | Msa0107090:intron | 50.0% | |
| GTTGGACTATTGCGCAGGGT+TGG | + | chr1_3:17049889-17049908 | Msa0107090:intron | 55.0% | |
| GTTGGACTATTGCGCAGGGT+TGG | + | chr1_3:17049889-17049908 | Msa0107090:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 17048576 | 17050001 | 17048576 | ID=Msa0107090;Name=Msa0107090 |
| chr1_3 | mRNA | 17048576 | 17050001 | 17048576 | ID=Msa0107090-mRNA-1;Parent=Msa0107090;Name=Msa0107090-mRNA-1;_AED=0.12;_eAED=0.13;_QI=0|0|0|1|0.66|0.75|4|0|293 |
| chr1_3 | exon | 17048576 | 17049008 | 17048576 | ID=Msa0107090-mRNA-1:exon:6422;Parent=Msa0107090-mRNA-1 |
| chr1_3 | exon | 17049107 | 17049234 | 17049107 | ID=Msa0107090-mRNA-1:exon:6423;Parent=Msa0107090-mRNA-1 |
| chr1_3 | exon | 17049533 | 17049757 | 17049533 | ID=Msa0107090-mRNA-1:exon:6424;Parent=Msa0107090-mRNA-1 |
| chr1_3 | exon | 17049906 | 17050001 | 17049906 | ID=Msa0107090-mRNA-1:exon:6425;Parent=Msa0107090-mRNA-1 |
| chr1_3 | CDS | 17048576 | 17049008 | 17048576 | ID=Msa0107090-mRNA-1:cds;Parent=Msa0107090-mRNA-1 |
| chr1_3 | CDS | 17049107 | 17049234 | 17049107 | ID=Msa0107090-mRNA-1:cds;Parent=Msa0107090-mRNA-1 |
| chr1_3 | CDS | 17049533 | 17049757 | 17049533 | ID=Msa0107090-mRNA-1:cds;Parent=Msa0107090-mRNA-1 |
| chr1_3 | CDS | 17049906 | 17050001 | 17049906 | ID=Msa0107090-mRNA-1:cds;Parent=Msa0107090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
