Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107110 | XP_024630388.1 | 90.104 | 384 | 35 | 1 | 1 | 381 | 1 | 384 | 0.0 | 681 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107110 | sp|Q8L3W1|VRN1_ARATH | 25.000 | 336 | 182 | 10 | 7 | 275 | 4 | 336 | 2.87e-18 | 88.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107110 | A0A072VFJ7 | 82.234 | 394 | 58 | 3 | 1 | 382 | 1 | 394 | 0.0 | 637 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0107110 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107110 | MtrunA17_Chr1g0163181 | 72.558 | 430 | 67 | 5 | 1 | 381 | 1 | 428 | 0.0 | 610 |
| Msa0107110 | MtrunA17_Chr1g0163201 | 81.600 | 375 | 57 | 3 | 20 | 382 | 18 | 392 | 0.0 | 598 |
| Msa0107110 | MtrunA17_Chr1g0163151 | 75.455 | 220 | 54 | 0 | 162 | 381 | 1 | 220 | 7.40e-119 | 343 |
| Msa0107110 | MtrunA17_Chr1g0163251 | 56.478 | 301 | 104 | 4 | 1 | 285 | 1 | 290 | 4.36e-112 | 333 |
| Msa0107110 | MtrunA17_Chr1g0163111 | 71.121 | 232 | 50 | 3 | 162 | 381 | 1 | 227 | 6.00e-108 | 316 |
| Msa0107110 | MtrunA17_Chr1g0163191 | 84.906 | 159 | 21 | 1 | 1 | 156 | 1 | 159 | 3.88e-83 | 250 |
| Msa0107110 | MtrunA17_Chr1g0163261 | 42.953 | 298 | 152 | 3 | 1 | 285 | 1 | 293 | 1.86e-76 | 238 |
| Msa0107110 | MtrunA17_Chr1g0163231 | 45.455 | 286 | 140 | 8 | 1 | 276 | 1 | 280 | 2.99e-76 | 238 |
| Msa0107110 | MtrunA17_Chr1g0171611 | 45.704 | 291 | 120 | 8 | 1 | 276 | 1 | 268 | 3.42e-73 | 230 |
| Msa0107110 | MtrunA17_Chr1g0163241 | 63.636 | 154 | 43 | 3 | 1 | 153 | 7 | 148 | 1.02e-59 | 191 |
| Msa0107110 | MtrunA17_Chr6g0476171 | 39.726 | 219 | 121 | 5 | 171 | 381 | 29 | 244 | 4.31e-40 | 142 |
| Msa0107110 | MtrunA17_Chr1g0162151 | 38.839 | 224 | 113 | 5 | 162 | 380 | 1 | 205 | 2.20e-38 | 137 |
| Msa0107110 | MtrunA17_Chr7g0233521 | 35.075 | 268 | 155 | 8 | 21 | 275 | 2 | 263 | 2.03e-33 | 125 |
| Msa0107110 | MtrunA17_Chr7g0233561 | 31.894 | 301 | 167 | 8 | 8 | 275 | 17 | 312 | 1.05e-32 | 125 |
| Msa0107110 | MtrunA17_Chr3g0131891 | 32.624 | 282 | 164 | 8 | 14 | 275 | 28 | 303 | 1.20e-32 | 125 |
| Msa0107110 | MtrunA17_Chr1g0208771 | 25.110 | 454 | 239 | 14 | 20 | 381 | 12 | 456 | 1.82e-32 | 127 |
| Msa0107110 | MtrunA17_Chr1g0163131 | 32.526 | 289 | 158 | 10 | 14 | 274 | 27 | 306 | 1.98e-32 | 124 |
| Msa0107110 | MtrunA17_Chr1g0163131 | 39.062 | 128 | 71 | 4 | 257 | 380 | 180 | 304 | 2.51e-17 | 82.0 |
| Msa0107110 | MtrunA17_Chr7g0233541 | 33.449 | 287 | 151 | 10 | 21 | 275 | 2 | 280 | 7.47e-32 | 122 |
| Msa0107110 | MtrunA17_Chr8g0390841 | 28.339 | 307 | 173 | 11 | 14 | 285 | 48 | 342 | 1.55e-30 | 122 |
| Msa0107110 | MtrunA17_Chr1g0163091 | 41.958 | 143 | 77 | 2 | 162 | 299 | 1 | 142 | 1.34e-29 | 112 |
| Msa0107110 | MtrunA17_Chr1g0163101 | 43.151 | 146 | 68 | 5 | 14 | 155 | 26 | 160 | 8.87e-28 | 108 |
| Msa0107110 | MtrunA17_Chr1g0163221 | 26.478 | 389 | 215 | 15 | 14 | 382 | 20 | 357 | 1.76e-27 | 111 |
| Msa0107110 | MtrunA17_Chr7g0233531 | 33.813 | 278 | 145 | 10 | 21 | 275 | 2 | 263 | 4.11e-27 | 108 |
| Msa0107110 | MtrunA17_Chr3g0103171 | 26.592 | 267 | 176 | 6 | 20 | 273 | 5 | 264 | 1.85e-25 | 103 |
| Msa0107110 | MtrunA17_Chr3g0103181 | 26.429 | 280 | 178 | 9 | 9 | 273 | 12 | 278 | 1.17e-24 | 102 |
| Msa0107110 | MtrunA17_Chr1g0163121 | 43.636 | 110 | 59 | 2 | 19 | 126 | 9 | 117 | 1.06e-23 | 95.9 |
| Msa0107110 | MtrunA17_Chr1g0162161 | 38.028 | 142 | 69 | 5 | 21 | 155 | 4 | 133 | 1.10e-23 | 96.3 |
| Msa0107110 | MtrunA17_Chr1g0163141 | 38.168 | 131 | 80 | 1 | 17 | 147 | 7 | 136 | 4.29e-23 | 95.5 |
| Msa0107110 | MtrunA17_Chr6g0476181 | 42.276 | 123 | 65 | 3 | 21 | 143 | 2 | 118 | 9.37e-23 | 94.0 |
| Msa0107110 | MtrunA17_Chr4g0067431 | 27.368 | 285 | 173 | 10 | 9 | 261 | 15 | 297 | 1.47e-22 | 97.1 |
| Msa0107110 | MtrunA17_Chr1g0163071 | 25.085 | 295 | 172 | 7 | 21 | 275 | 2 | 287 | 5.98e-22 | 95.1 |
| Msa0107110 | MtrunA17_Chr1g0163081 | 40.741 | 108 | 61 | 2 | 21 | 126 | 6 | 112 | 7.46e-22 | 90.9 |
| Msa0107110 | MtrunA17_Chr7g0233571 | 29.648 | 199 | 120 | 4 | 14 | 192 | 19 | 217 | 6.58e-20 | 87.4 |
| Msa0107110 | MtrunA17_Chr3g0103151 | 36.885 | 122 | 70 | 4 | 9 | 126 | 12 | 130 | 2.09e-19 | 84.7 |
| Msa0107110 | MtrunA17_Chr3g0103191 | 27.586 | 203 | 135 | 6 | 9 | 201 | 12 | 212 | 3.67e-19 | 86.3 |
| Msa0107110 | MtrunA17_Chr5g0419201 | 31.138 | 167 | 99 | 5 | 14 | 167 | 25 | 188 | 1.99e-18 | 82.8 |
| Msa0107110 | MtrunA17_Chr1g0163161 | 36.522 | 115 | 62 | 2 | 33 | 147 | 1 | 104 | 3.87e-17 | 77.4 |
| Msa0107110 | MtrunA17_Chr6g0467351 | 35.135 | 111 | 69 | 2 | 13 | 120 | 23 | 133 | 9.65e-16 | 75.9 |
| Msa0107110 | MtrunA17_Chr4g0033961 | 35.644 | 101 | 59 | 2 | 7 | 101 | 4 | 104 | 1.18e-12 | 68.9 |
| Msa0107110 | MtrunA17_Chr1g0162441 | 33.663 | 101 | 61 | 2 | 7 | 101 | 5 | 105 | 2.13e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107110 | AT3G18990.1 | 25.000 | 336 | 182 | 10 | 7 | 275 | 4 | 336 | 2.92e-19 | 88.6 |
| Msa0107110 | AT3G18990.2 | 24.189 | 339 | 187 | 9 | 7 | 278 | 4 | 339 | 1.42e-18 | 86.7 |
Find 77 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTAGCTGTGCTTCTTTA+AGG | 0.101734 | 1_3:-17108842 | Msa0107110:CDS |
| CAACACCGTTTGGAAATTTA+AGG | 0.151014 | 1_3:+17110644 | None:intergenic |
| CTTTGGGATTGCTTCGTTTC+CGG | 0.165431 | 1_3:+17109524 | None:intergenic |
| TATTTCTCTGCATATTTCTT+AGG | 0.182822 | 1_3:+17110694 | None:intergenic |
| TTTGCAAAGCCTTTCAAATA+TGG | 0.200041 | 1_3:-17110559 | Msa0107110:CDS |
| TAAATATCCAGCACTTAAAA+AGG | 0.203599 | 1_3:+17108792 | None:intergenic |
| TTAAAACCTAGTAGTTTCTT+TGG | 0.230973 | 1_3:+17109507 | None:intergenic |
| ATTGTCCTTTGAGCTTTCTT+TGG | 0.254871 | 1_3:+17110337 | None:intergenic |
| AGAAATATGCAGAGAAATAT+TGG | 0.272878 | 1_3:-17110690 | Msa0107110:CDS |
| TTAATGGAACTGCAACAATA+AGG | 0.277244 | 1_3:-17109725 | Msa0107110:CDS |
| ACATAACACATTCAAGGTTT+TGG | 0.285361 | 1_3:-17109194 | Msa0107110:CDS |
| TGGAGAGTAATGGTGATATT+TGG | 0.287546 | 1_3:-17110603 | Msa0107110:CDS |
| TTGGAGATACTTGTCTCTTT+AGG | 0.296651 | 1_3:-17108899 | Msa0107110:CDS |
| TTTGGAAATTTAAGGAATAT+AGG | 0.302976 | 1_3:+17110652 | None:intergenic |
| AAAGCTCAAAGGACAATAAA+TGG | 0.303877 | 1_3:-17110331 | Msa0107110:CDS |
| ATATTTGGTTTCAAAAGAAT+TGG | 0.305799 | 1_3:-17110588 | Msa0107110:CDS |
| TTACACCAATGGCTATTTCT+TGG | 0.306445 | 1_3:-17109861 | Msa0107110:intron |
| CTCTTAACTTTCAAATTCAT+TGG | 0.314459 | 1_3:-17110532 | Msa0107110:CDS |
| GTGGTGGTTGGAAAATATTC+AGG | 0.328531 | 1_3:-17109635 | Msa0107110:CDS |
| TTGGAAATTTAAGGAATATA+GGG | 0.346499 | 1_3:+17110653 | None:intergenic |
| CATTAACAGCTTCAGATGTT+TGG | 0.351304 | 1_3:+17109918 | None:intergenic |
| TTATAAAGAAAGATCTTGTT+TGG | 0.355178 | 1_3:-17109658 | Msa0107110:CDS |
| GAGGTTAGTTTGAGGTATTA+TGG | 0.363534 | 1_3:-17109681 | Msa0107110:CDS |
| AATATTATTCTATGAAAATC+TGG | 0.366274 | 1_3:+17110841 | None:intergenic |
| TAAAACCTAGTAGTTTCTTT+GGG | 0.368375 | 1_3:+17109508 | None:intergenic |
| TAATGGAACTGCAACAATAA+GGG | 0.376410 | 1_3:-17109724 | Msa0107110:CDS |
| ATTGTGACAATGAATGAAAA+AGG | 0.410109 | 1_3:+17109555 | None:intergenic |
| TATTTGGTTTCAAAAGAATT+GGG | 0.412169 | 1_3:-17110587 | Msa0107110:CDS |
| ATAATTTATTTCTAAAGTAT+TGG | 0.414924 | 1_3:+17110477 | None:intergenic |
| GTGTTATGTTTCATCACATC+AGG | 0.425287 | 1_3:+17109208 | None:intergenic |
| TATAAAGAAAGATCTTGTTT+GGG | 0.427295 | 1_3:-17109657 | Msa0107110:CDS |
| GATGAAACATAACACATTCA+AGG | 0.454763 | 1_3:-17109200 | Msa0107110:CDS |
| AAGTGATGAAGAGAGTGATA+AGG | 0.461668 | 1_3:-17110368 | Msa0107110:CDS |
| AAAGAATGCAATGTGGAGAT+TGG | 0.464528 | 1_3:-17108918 | Msa0107110:CDS |
| CAAAGTGGCCATGGTGAAGA+AGG | 0.465563 | 1_3:-17109951 | Msa0107110:CDS |
| TGTCATTATAACTTCAAAAG+AGG | 0.475259 | 1_3:+17109889 | None:intergenic |
| TTAACTTTCAAATTCATTGG+TGG | 0.475675 | 1_3:-17110529 | Msa0107110:CDS |
| AGTATTCGTGGCTGTAGGTT+CGG | 0.481056 | 1_3:-17108963 | Msa0107110:CDS |
| GCTGTAGGTTCGGTAAAGAT+TGG | 0.487428 | 1_3:-17108953 | Msa0107110:CDS |
| GGTGCTGAAGCCACTGAAGA+AGG | 0.489506 | 1_3:-17110430 | Msa0107110:CDS |
| CCAAAGGAATTTATGAAAAG+AGG | 0.492978 | 1_3:-17109056 | Msa0107110:CDS |
| GCAATCCCAAAGAAACTACT+AGG | 0.493084 | 1_3:-17109513 | Msa0107110:intron |
| GATCTTGTTTGGGTGGTGGT+TGG | 0.501988 | 1_3:-17109647 | Msa0107110:CDS |
| GTCATTATAACTTCAAAAGA+GGG | 0.507540 | 1_3:+17109890 | None:intergenic |
| GGAGTGTGGAGGTTAGTTTG+AGG | 0.513468 | 1_3:-17109689 | Msa0107110:CDS |
| ACTTTCTTTACCTTCTTCAG+TGG | 0.514754 | 1_3:+17110420 | None:intergenic |
| GATGAGGAAGCCACTGAAGA+AGG | 0.517797 | 1_3:-17110397 | Msa0107110:CDS |
| AAGAGATATCCATATTTGAA+AGG | 0.520085 | 1_3:+17110550 | None:intergenic |
| ACTTTCTTCACCTTCTTCAG+TGG | 0.520796 | 1_3:+17110387 | None:intergenic |
| AACTATTATGAGAGTATTCG+TGG | 0.521105 | 1_3:-17108975 | Msa0107110:CDS |
| AGGATGTCATGAAAATATTG+TGG | 0.531604 | 1_3:-17109036 | Msa0107110:CDS |
| ATTGTCACAATTACTCGTGC+CGG | 0.532896 | 1_3:-17109543 | Msa0107110:CDS |
| ATATTCCTTAAATTTCCAAA+CGG | 0.536219 | 1_3:-17110649 | Msa0107110:CDS |
| AATGGCAAGAGAAAATTCTC+AGG | 0.536390 | 1_3:-17110313 | Msa0107110:intron |
| AAAGAAAGATCTTGTTTGGG+TGG | 0.538945 | 1_3:-17109654 | Msa0107110:CDS |
| AATATCAAAGCAGTTGATGA+AGG | 0.544297 | 1_3:-17110451 | Msa0107110:CDS |
| GAAAGATCTTGTTTGGGTGG+TGG | 0.546468 | 1_3:-17109651 | Msa0107110:CDS |
| CAATAAGGGTTGGTAATGAA+AGG | 0.551596 | 1_3:-17109710 | Msa0107110:CDS |
| TCTTTAGGTTAATTGATGAA+AGG | 0.553116 | 1_3:-17108884 | Msa0107110:CDS |
| GTAAATTTGAGATGATTCGA+CGG | 0.557247 | 1_3:-17109581 | Msa0107110:CDS |
| TTTGGTGAAGAACACAGCCC+CGG | 0.573521 | 1_3:-17109176 | Msa0107110:intron |
| GGAACTGCAACAATAAGGGT+TGG | 0.581562 | 1_3:-17109720 | Msa0107110:CDS |
| GTATTTGCAGAGTGTACCAA+AGG | 0.583029 | 1_3:-17109072 | Msa0107110:intron |
| ACTTACCAAGAAATAGCCAT+TGG | 0.587587 | 1_3:+17109856 | None:intergenic |
| GAGAAAGTCATGGTTCGTAA+AGG | 0.590660 | 1_3:-17109000 | Msa0107110:CDS |
| AGGTTGTAACAAAGTGGCCA+TGG | 0.594476 | 1_3:-17109960 | Msa0107110:CDS |
| CTTTACAGGTTGTAACAAAG+TGG | 0.599398 | 1_3:-17109966 | Msa0107110:intron |
| AGAAGGTAAAGAAAGTGATG+AGG | 0.601536 | 1_3:-17110413 | Msa0107110:CDS |
| TGGTGGTTGGAAAATATTCA+GGG | 0.603185 | 1_3:-17109634 | Msa0107110:CDS |
| ATGACACAATCTTACACCAA+TGG | 0.609025 | 1_3:-17109872 | Msa0107110:CDS |
| TATGCAGAGAAATATTGGAA+AGG | 0.611326 | 1_3:-17110685 | Msa0107110:CDS |
| GGTTGGTAATGAAAGGAGTG+TGG | 0.615653 | 1_3:-17109703 | Msa0107110:CDS |
| ATGAGAGTATTCGTGGCTGT+AGG | 0.616385 | 1_3:-17108968 | Msa0107110:CDS |
| TGGTAATGAAAGGAGTGTGG+AGG | 0.642373 | 1_3:-17109700 | Msa0107110:CDS |
| TGTTCTCTTGAAAACTCACA+TGG | 0.651484 | 1_3:+17109759 | None:intergenic |
| AAATGCCAAAGAAAGCTCAA+AGG | 0.663329 | 1_3:-17110342 | Msa0107110:CDS |
| ATTCATGAAAGAATGCAATG+TGG | 0.699756 | 1_3:-17108925 | Msa0107110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTTATTTCTAAAGTAT+TGG | + | chr1_3:17109145-17109164 | None:intergenic | 10.0% |
| !! | ATCATTTATGATAAAAAATT+TGG | - | chr1_3:17109544-17109563 | Msa0107110:CDS | 10.0% |
| !!! | ATAATTTATTTCTAAAGTAT+TGG | + | chr1_3:17109145-17109164 | None:intergenic | 10.0% |
| !! | ATCATTTATGATAAAAAATT+TGG | - | chr1_3:17109544-17109563 | Msa0107110:CDS | 10.0% |
| !! | AATATTATTCTATGAAAATC+TGG | + | chr1_3:17108781-17108800 | None:intergenic | 15.0% |
| !!! | TGTTGAACAAAAAATATTTT+GGG | - | chr1_3:17108993-17109012 | Msa0107110:CDS | 15.0% |
| !!! | TATTTTAAGGTTAAGATATT+TGG | - | chr1_3:17109117-17109136 | Msa0107110:intron | 15.0% |
| !!! | AAATATGTTTTTTTTATGGA+AGG | - | chr1_3:17109504-17109523 | Msa0107110:intron | 15.0% |
| !! | ATTATATCTTTAAACTTTAC+AGG | - | chr1_3:17109639-17109658 | Msa0107110:CDS | 15.0% |
| !!! | TCAAATATCTCTAAATTTTT+TGG | - | chr1_3:17110328-17110347 | Msa0107110:CDS | 15.0% |
| !!! | CAAATATCTCTAAATTTTTT+GGG | - | chr1_3:17110329-17110348 | Msa0107110:CDS | 15.0% |
| !! | AATATTATTCTATGAAAATC+TGG | + | chr1_3:17108781-17108800 | None:intergenic | 15.0% |
| !!! | TGTTGAACAAAAAATATTTT+GGG | - | chr1_3:17108993-17109012 | Msa0107110:CDS | 15.0% |
| !!! | TATTTTAAGGTTAAGATATT+TGG | - | chr1_3:17109117-17109136 | Msa0107110:intron | 15.0% |
| !!! | AAATATGTTTTTTTTATGGA+AGG | - | chr1_3:17109504-17109523 | Msa0107110:intron | 15.0% |
| !! | ATTATATCTTTAAACTTTAC+AGG | - | chr1_3:17109639-17109658 | Msa0107110:CDS | 15.0% |
| !!! | TCAAATATCTCTAAATTTTT+TGG | - | chr1_3:17110328-17110347 | Msa0107110:CDS | 15.0% |
| !!! | CAAATATCTCTAAATTTTTT+GGG | - | chr1_3:17110329-17110348 | Msa0107110:CDS | 15.0% |
| !! | GAAATCATACATTAACAATA+GGG | + | chr1_3:17108881-17108900 | None:intergenic | 20.0% |
| !! | AGAAATCATACATTAACAAT+AGG | + | chr1_3:17108882-17108901 | None:intergenic | 20.0% |
| !! | TTGGAAATTTAAGGAATATA+GGG | + | chr1_3:17108969-17108988 | None:intergenic | 20.0% |
| !! | TTTGGAAATTTAAGGAATAT+AGG | + | chr1_3:17108970-17108989 | None:intergenic | 20.0% |
| !! | ATATTCCTTAAATTTCCAAA+CGG | - | chr1_3:17108970-17108989 | Msa0107110:CDS | 20.0% |
| !!! | GTGTTGAACAAAAAATATTT+TGG | - | chr1_3:17108992-17109011 | Msa0107110:CDS | 20.0% |
| !!! | ATATTTGGTTTCAAAAGAAT+TGG | - | chr1_3:17109031-17109050 | Msa0107110:CDS | 20.0% |
| !!! | TATTTGGTTTCAAAAGAATT+GGG | - | chr1_3:17109032-17109051 | Msa0107110:CDS | 20.0% |
| !!! | TAAATCATTATTTGAAACAG+TGG | - | chr1_3:17109834-17109853 | Msa0107110:intron | 20.0% |
| !! | TTATAAAGAAAGATCTTGTT+TGG | - | chr1_3:17109961-17109980 | Msa0107110:CDS | 20.0% |
| !!! | TATAAAGAAAGATCTTGTTT+GGG | - | chr1_3:17109962-17109981 | Msa0107110:intron | 20.0% |
| !! | TATGAAAAAGGTTATAAGAA+AGG | - | chr1_3:17110181-17110200 | Msa0107110:intron | 20.0% |
| !! | ATGAAAAAGGTTATAAGAAA+GGG | - | chr1_3:17110182-17110201 | Msa0107110:intron | 20.0% |
| !! | TAAACATACAATATACAGTT+AGG | + | chr1_3:17110272-17110291 | None:intergenic | 20.0% |
| !!! | TTTTATGTAATTAATCCTAC+CGG | + | chr1_3:17110465-17110484 | None:intergenic | 20.0% |
| !! | AAATATTGTGGAGTTAAAAA+TGG | - | chr1_3:17110595-17110614 | Msa0107110:CDS | 20.0% |
| !! | AATATTGTGGAGTTAAAAAT+GGG | - | chr1_3:17110596-17110615 | Msa0107110:CDS | 20.0% |
| !! | GAAATCATACATTAACAATA+GGG | + | chr1_3:17108881-17108900 | None:intergenic | 20.0% |
| !! | AGAAATCATACATTAACAAT+AGG | + | chr1_3:17108882-17108901 | None:intergenic | 20.0% |
| !! | TTGGAAATTTAAGGAATATA+GGG | + | chr1_3:17108969-17108988 | None:intergenic | 20.0% |
| !! | TTTGGAAATTTAAGGAATAT+AGG | + | chr1_3:17108970-17108989 | None:intergenic | 20.0% |
| !! | ATATTCCTTAAATTTCCAAA+CGG | - | chr1_3:17108970-17108989 | Msa0107110:CDS | 20.0% |
| !!! | GTGTTGAACAAAAAATATTT+TGG | - | chr1_3:17108992-17109011 | Msa0107110:CDS | 20.0% |
| !!! | ATATTTGGTTTCAAAAGAAT+TGG | - | chr1_3:17109031-17109050 | Msa0107110:CDS | 20.0% |
| !!! | TATTTGGTTTCAAAAGAATT+GGG | - | chr1_3:17109032-17109051 | Msa0107110:CDS | 20.0% |
| !!! | TAAATCATTATTTGAAACAG+TGG | - | chr1_3:17109834-17109853 | Msa0107110:intron | 20.0% |
| !! | TTATAAAGAAAGATCTTGTT+TGG | - | chr1_3:17109961-17109980 | Msa0107110:CDS | 20.0% |
| !!! | TATAAAGAAAGATCTTGTTT+GGG | - | chr1_3:17109962-17109981 | Msa0107110:intron | 20.0% |
| !! | TATGAAAAAGGTTATAAGAA+AGG | - | chr1_3:17110181-17110200 | Msa0107110:intron | 20.0% |
| !! | ATGAAAAAGGTTATAAGAAA+GGG | - | chr1_3:17110182-17110201 | Msa0107110:intron | 20.0% |
| !! | TAAACATACAATATACAGTT+AGG | + | chr1_3:17110272-17110291 | None:intergenic | 20.0% |
| !!! | TTTTATGTAATTAATCCTAC+CGG | + | chr1_3:17110465-17110484 | None:intergenic | 20.0% |
| !! | AAATATTGTGGAGTTAAAAA+TGG | - | chr1_3:17110595-17110614 | Msa0107110:CDS | 20.0% |
| !! | AATATTGTGGAGTTAAAAAT+GGG | - | chr1_3:17110596-17110615 | Msa0107110:CDS | 20.0% |
| ! | TATTTCTCTGCATATTTCTT+AGG | + | chr1_3:17108928-17108947 | None:intergenic | 25.0% |
| ! | AGAAATATGCAGAGAAATAT+TGG | - | chr1_3:17108929-17108948 | Msa0107110:CDS | 25.0% |
| !!! | TGAACAAAAAATATTTTGGG+TGG | - | chr1_3:17108996-17109015 | Msa0107110:CDS | 25.0% |
| ! | AAGAGATATCCATATTTGAA+AGG | + | chr1_3:17109072-17109091 | None:intergenic | 25.0% |
| ! | CTCTTAACTTTCAAATTCAT+TGG | - | chr1_3:17109087-17109106 | Msa0107110:intron | 25.0% |
| ! | TTAACTTTCAAATTCATTGG+TGG | - | chr1_3:17109090-17109109 | Msa0107110:intron | 25.0% |
| !!! | AACTTTTAAGAGTTATTCCA+TGG | - | chr1_3:17109382-17109401 | Msa0107110:intron | 25.0% |
| ! | GTCATTATAACTTCAAAAGA+GGG | + | chr1_3:17109732-17109751 | None:intergenic | 25.0% |
| ! | TGTCATTATAACTTCAAAAG+AGG | + | chr1_3:17109733-17109752 | None:intergenic | 25.0% |
| !! | GAACACTTGAAAGATTTTAA+TGG | - | chr1_3:17109878-17109897 | Msa0107110:CDS | 25.0% |
| ! | ATTGTGACAATGAATGAAAA+AGG | + | chr1_3:17110067-17110086 | None:intergenic | 25.0% |
| ! | TAAAACCTAGTAGTTTCTTT+GGG | + | chr1_3:17110114-17110133 | None:intergenic | 25.0% |
| ! | TTAAAACCTAGTAGTTTCTT+TGG | + | chr1_3:17110115-17110134 | None:intergenic | 25.0% |
| ! | TGAAAAAGGTTATAAGAAAG+GGG | - | chr1_3:17110183-17110202 | Msa0107110:intron | 25.0% |
| ! | TTTATGTAATTAATCCTACC+GGG | + | chr1_3:17110464-17110483 | None:intergenic | 25.0% |
| ! | ATATTGTGGAGTTAAAAATG+GGG | - | chr1_3:17110597-17110616 | Msa0107110:CDS | 25.0% |
| !! | TCTTTAGGTTAATTGATGAA+AGG | - | chr1_3:17110735-17110754 | Msa0107110:intron | 25.0% |
| ! | AAATATCCAGCACTTAAAAA+GGG | + | chr1_3:17110829-17110848 | None:intergenic | 25.0% |
| ! | TAAATATCCAGCACTTAAAA+AGG | + | chr1_3:17110830-17110849 | None:intergenic | 25.0% |
| ! | TATTTCTCTGCATATTTCTT+AGG | + | chr1_3:17108928-17108947 | None:intergenic | 25.0% |
| ! | AGAAATATGCAGAGAAATAT+TGG | - | chr1_3:17108929-17108948 | Msa0107110:CDS | 25.0% |
| !!! | TGAACAAAAAATATTTTGGG+TGG | - | chr1_3:17108996-17109015 | Msa0107110:CDS | 25.0% |
| ! | AAGAGATATCCATATTTGAA+AGG | + | chr1_3:17109072-17109091 | None:intergenic | 25.0% |
| ! | CTCTTAACTTTCAAATTCAT+TGG | - | chr1_3:17109087-17109106 | Msa0107110:intron | 25.0% |
| ! | TTAACTTTCAAATTCATTGG+TGG | - | chr1_3:17109090-17109109 | Msa0107110:intron | 25.0% |
| !!! | AACTTTTAAGAGTTATTCCA+TGG | - | chr1_3:17109382-17109401 | Msa0107110:intron | 25.0% |
| ! | GTCATTATAACTTCAAAAGA+GGG | + | chr1_3:17109732-17109751 | None:intergenic | 25.0% |
| ! | TGTCATTATAACTTCAAAAG+AGG | + | chr1_3:17109733-17109752 | None:intergenic | 25.0% |
| !! | GAACACTTGAAAGATTTTAA+TGG | - | chr1_3:17109878-17109897 | Msa0107110:CDS | 25.0% |
| ! | ATTGTGACAATGAATGAAAA+AGG | + | chr1_3:17110067-17110086 | None:intergenic | 25.0% |
| ! | TAAAACCTAGTAGTTTCTTT+GGG | + | chr1_3:17110114-17110133 | None:intergenic | 25.0% |
| ! | TTAAAACCTAGTAGTTTCTT+TGG | + | chr1_3:17110115-17110134 | None:intergenic | 25.0% |
| ! | TGAAAAAGGTTATAAGAAAG+GGG | - | chr1_3:17110183-17110202 | Msa0107110:intron | 25.0% |
| ! | TTTATGTAATTAATCCTACC+GGG | + | chr1_3:17110464-17110483 | None:intergenic | 25.0% |
| ! | ATATTGTGGAGTTAAAAATG+GGG | - | chr1_3:17110597-17110616 | Msa0107110:CDS | 25.0% |
| !! | TCTTTAGGTTAATTGATGAA+AGG | - | chr1_3:17110735-17110754 | Msa0107110:intron | 25.0% |
| ! | AAATATCCAGCACTTAAAAA+GGG | + | chr1_3:17110829-17110848 | None:intergenic | 25.0% |
| ! | TAAATATCCAGCACTTAAAA+AGG | + | chr1_3:17110830-17110849 | None:intergenic | 25.0% |
| TATGCAGAGAAATATTGGAA+AGG | - | chr1_3:17108934-17108953 | Msa0107110:CDS | 30.0% | |
| !!! | ATTTTTTGTTCAACACCGTT+TGG | + | chr1_3:17108988-17109007 | None:intergenic | 30.0% |
| TTTGCAAAGCCTTTCAAATA+TGG | - | chr1_3:17109060-17109079 | Msa0107110:CDS | 30.0% | |
| !! | CATTGGTGGATCATATTTTA+AGG | - | chr1_3:17109104-17109123 | Msa0107110:intron | 30.0% |
| !! | AATATCAAAGCAGTTGATGA+AGG | - | chr1_3:17109168-17109187 | Msa0107110:intron | 30.0% |
| AAAGCTCAAAGGACAATAAA+TGG | - | chr1_3:17109288-17109307 | Msa0107110:intron | 30.0% | |
| GAAAAAATCACAACAAACCA+TGG | + | chr1_3:17109402-17109421 | None:intergenic | 30.0% | |
| TCTGAAAGCTTGTAAATCTA+AGG | - | chr1_3:17109422-17109441 | Msa0107110:intron | 30.0% | |
| ! | AGTGTCTTGAAAATCGTTTT+TGG | - | chr1_3:17109454-17109473 | Msa0107110:intron | 30.0% |
| TTAATGGAACTGCAACAATA+AGG | - | chr1_3:17109894-17109913 | Msa0107110:CDS | 30.0% | |
| TAATGGAACTGCAACAATAA+GGG | - | chr1_3:17109895-17109914 | Msa0107110:CDS | 30.0% | |
| ! | GTAAATTTGAGATGATTCGA+CGG | - | chr1_3:17110038-17110057 | Msa0107110:intron | 30.0% |
| CTAAAAAAGAAACTGAATCC+TGG | + | chr1_3:17110242-17110261 | None:intergenic | 30.0% | |
| GATGAAACATAACACATTCA+AGG | - | chr1_3:17110419-17110438 | Msa0107110:CDS | 30.0% | |
| ! | ACATAACACATTCAAGGTTT+TGG | - | chr1_3:17110425-17110444 | Msa0107110:CDS | 30.0% |
| TTATGTAATTAATCCTACCG+GGG | + | chr1_3:17110463-17110482 | None:intergenic | 30.0% | |
| ! | CCTCTTTTCATAAATTCCTT+TGG | + | chr1_3:17110566-17110585 | None:intergenic | 30.0% |
| CCAAAGGAATTTATGAAAAG+AGG | - | chr1_3:17110563-17110582 | Msa0107110:CDS | 30.0% | |
| AGGATGTCATGAAAATATTG+TGG | - | chr1_3:17110583-17110602 | Msa0107110:CDS | 30.0% | |
| !! | AACTATTATGAGAGTATTCG+TGG | - | chr1_3:17110644-17110663 | Msa0107110:CDS | 30.0% |
| ATTCATGAAAGAATGCAATG+TGG | - | chr1_3:17110694-17110713 | Msa0107110:CDS | 30.0% | |
| TATGCAGAGAAATATTGGAA+AGG | - | chr1_3:17108934-17108953 | Msa0107110:CDS | 30.0% | |
| !!! | ATTTTTTGTTCAACACCGTT+TGG | + | chr1_3:17108988-17109007 | None:intergenic | 30.0% |
| TTTGCAAAGCCTTTCAAATA+TGG | - | chr1_3:17109060-17109079 | Msa0107110:CDS | 30.0% | |
| !! | CATTGGTGGATCATATTTTA+AGG | - | chr1_3:17109104-17109123 | Msa0107110:intron | 30.0% |
| !! | AATATCAAAGCAGTTGATGA+AGG | - | chr1_3:17109168-17109187 | Msa0107110:intron | 30.0% |
| AAAGCTCAAAGGACAATAAA+TGG | - | chr1_3:17109288-17109307 | Msa0107110:intron | 30.0% | |
| GAAAAAATCACAACAAACCA+TGG | + | chr1_3:17109402-17109421 | None:intergenic | 30.0% | |
| TCTGAAAGCTTGTAAATCTA+AGG | - | chr1_3:17109422-17109441 | Msa0107110:intron | 30.0% | |
| ! | AGTGTCTTGAAAATCGTTTT+TGG | - | chr1_3:17109454-17109473 | Msa0107110:intron | 30.0% |
| TTAATGGAACTGCAACAATA+AGG | - | chr1_3:17109894-17109913 | Msa0107110:CDS | 30.0% | |
| TAATGGAACTGCAACAATAA+GGG | - | chr1_3:17109895-17109914 | Msa0107110:CDS | 30.0% | |
| ! | GTAAATTTGAGATGATTCGA+CGG | - | chr1_3:17110038-17110057 | Msa0107110:intron | 30.0% |
| CTAAAAAAGAAACTGAATCC+TGG | + | chr1_3:17110242-17110261 | None:intergenic | 30.0% | |
| GATGAAACATAACACATTCA+AGG | - | chr1_3:17110419-17110438 | Msa0107110:CDS | 30.0% | |
| ! | ACATAACACATTCAAGGTTT+TGG | - | chr1_3:17110425-17110444 | Msa0107110:CDS | 30.0% |
| TTATGTAATTAATCCTACCG+GGG | + | chr1_3:17110463-17110482 | None:intergenic | 30.0% | |
| ! | CCTCTTTTCATAAATTCCTT+TGG | + | chr1_3:17110566-17110585 | None:intergenic | 30.0% |
| CCAAAGGAATTTATGAAAAG+AGG | - | chr1_3:17110563-17110582 | Msa0107110:CDS | 30.0% | |
| AGGATGTCATGAAAATATTG+TGG | - | chr1_3:17110583-17110602 | Msa0107110:CDS | 30.0% | |
| !! | AACTATTATGAGAGTATTCG+TGG | - | chr1_3:17110644-17110663 | Msa0107110:CDS | 30.0% |
| ATTCATGAAAGAATGCAATG+TGG | - | chr1_3:17110694-17110713 | Msa0107110:CDS | 30.0% | |
| TCTGAATTTCTTTGTTGCAG+AGG | - | chr1_3:17108899-17108918 | Msa0107110:CDS | 35.0% | |
| CTGAATTTCTTTGTTGCAGA+GGG | - | chr1_3:17108900-17108919 | Msa0107110:CDS | 35.0% | |
| CAACACCGTTTGGAAATTTA+AGG | + | chr1_3:17108978-17108997 | None:intergenic | 35.0% | |
| !! | ATATTTTGGGTGGAGAGTAA+TGG | - | chr1_3:17109006-17109025 | Msa0107110:CDS | 35.0% |
| TGGAGAGTAATGGTGATATT+TGG | - | chr1_3:17109016-17109035 | Msa0107110:CDS | 35.0% | |
| ACTTTCTTTACCTTCTTCAG+TGG | + | chr1_3:17109202-17109221 | None:intergenic | 35.0% | |
| AGAAGGTAAAGAAAGTGATG+AGG | - | chr1_3:17109206-17109225 | Msa0107110:CDS | 35.0% | |
| AAGTGATGAAGAGAGTGATA+AGG | - | chr1_3:17109251-17109270 | Msa0107110:intron | 35.0% | |
| AAATGCCAAAGAAAGCTCAA+AGG | - | chr1_3:17109277-17109296 | Msa0107110:intron | 35.0% | |
| ATTGTCCTTTGAGCTTTCTT+TGG | + | chr1_3:17109285-17109304 | None:intergenic | 35.0% | |
| AATGGCAAGAGAAAATTCTC+AGG | - | chr1_3:17109306-17109325 | Msa0107110:intron | 35.0% | |
| GAAAATTCTCAGGTGAGTTT+AGG | - | chr1_3:17109316-17109335 | Msa0107110:intron | 35.0% | |
| CTTTACAGGTTGTAACAAAG+TGG | - | chr1_3:17109653-17109672 | Msa0107110:CDS | 35.0% | |
| CATTAACAGCTTCAGATGTT+TGG | + | chr1_3:17109704-17109723 | None:intergenic | 35.0% | |
| ATGACACAATCTTACACCAA+TGG | - | chr1_3:17109747-17109766 | Msa0107110:CDS | 35.0% | |
| !! | TTACACCAATGGCTATTTCT+TGG | - | chr1_3:17109758-17109777 | Msa0107110:CDS | 35.0% |
| ACTTACCAAGAAATAGCCAT+TGG | + | chr1_3:17109766-17109785 | None:intergenic | 35.0% | |
| TGTTCTCTTGAAAACTCACA+TGG | + | chr1_3:17109863-17109882 | None:intergenic | 35.0% | |
| !! | CAATAAGGGTTGGTAATGAA+AGG | - | chr1_3:17109909-17109928 | Msa0107110:CDS | 35.0% |
| !! | GAGGTTAGTTTGAGGTATTA+TGG | - | chr1_3:17109938-17109957 | Msa0107110:CDS | 35.0% |
| ! | AAAGAAAGATCTTGTTTGGG+TGG | - | chr1_3:17109965-17109984 | Msa0107110:intron | 35.0% |
| TGGTGGTTGGAAAATATTCA+GGG | - | chr1_3:17109985-17110004 | Msa0107110:intron | 35.0% | |
| AACTGAATCCTGGATAACTT+AGG | + | chr1_3:17110232-17110251 | None:intergenic | 35.0% | |
| GTTTATGCCTATTGTACAGA+AGG | - | chr1_3:17110387-17110406 | Msa0107110:CDS | 35.0% | |
| GTGTTATGTTTCATCACATC+AGG | + | chr1_3:17110414-17110433 | None:intergenic | 35.0% | |
| TAAAAATGGGGAGAAAGTCA+TGG | - | chr1_3:17110609-17110628 | Msa0107110:CDS | 35.0% | |
| AAAGAATGCAATGTGGAGAT+TGG | - | chr1_3:17110701-17110720 | Msa0107110:CDS | 35.0% | |
| TTGGAGATACTTGTCTCTTT+AGG | - | chr1_3:17110720-17110739 | Msa0107110:intron | 35.0% | |
| CAATTAGCTGTGCTTCTTTA+AGG | - | chr1_3:17110777-17110796 | Msa0107110:intron | 35.0% | |
| TCTGAATTTCTTTGTTGCAG+AGG | - | chr1_3:17108899-17108918 | Msa0107110:CDS | 35.0% | |
| CTGAATTTCTTTGTTGCAGA+GGG | - | chr1_3:17108900-17108919 | Msa0107110:CDS | 35.0% | |
| CAACACCGTTTGGAAATTTA+AGG | + | chr1_3:17108978-17108997 | None:intergenic | 35.0% | |
| !! | ATATTTTGGGTGGAGAGTAA+TGG | - | chr1_3:17109006-17109025 | Msa0107110:CDS | 35.0% |
| TGGAGAGTAATGGTGATATT+TGG | - | chr1_3:17109016-17109035 | Msa0107110:CDS | 35.0% | |
| ACTTTCTTTACCTTCTTCAG+TGG | + | chr1_3:17109202-17109221 | None:intergenic | 35.0% | |
| AGAAGGTAAAGAAAGTGATG+AGG | - | chr1_3:17109206-17109225 | Msa0107110:CDS | 35.0% | |
| AAGTGATGAAGAGAGTGATA+AGG | - | chr1_3:17109251-17109270 | Msa0107110:intron | 35.0% | |
| AAATGCCAAAGAAAGCTCAA+AGG | - | chr1_3:17109277-17109296 | Msa0107110:intron | 35.0% | |
| ATTGTCCTTTGAGCTTTCTT+TGG | + | chr1_3:17109285-17109304 | None:intergenic | 35.0% | |
| AATGGCAAGAGAAAATTCTC+AGG | - | chr1_3:17109306-17109325 | Msa0107110:intron | 35.0% | |
| GAAAATTCTCAGGTGAGTTT+AGG | - | chr1_3:17109316-17109335 | Msa0107110:intron | 35.0% | |
| CTTTACAGGTTGTAACAAAG+TGG | - | chr1_3:17109653-17109672 | Msa0107110:CDS | 35.0% | |
| CATTAACAGCTTCAGATGTT+TGG | + | chr1_3:17109704-17109723 | None:intergenic | 35.0% | |
| ATGACACAATCTTACACCAA+TGG | - | chr1_3:17109747-17109766 | Msa0107110:CDS | 35.0% | |
| !! | TTACACCAATGGCTATTTCT+TGG | - | chr1_3:17109758-17109777 | Msa0107110:CDS | 35.0% |
| ACTTACCAAGAAATAGCCAT+TGG | + | chr1_3:17109766-17109785 | None:intergenic | 35.0% | |
| TGTTCTCTTGAAAACTCACA+TGG | + | chr1_3:17109863-17109882 | None:intergenic | 35.0% | |
| !! | CAATAAGGGTTGGTAATGAA+AGG | - | chr1_3:17109909-17109928 | Msa0107110:CDS | 35.0% |
| !! | GAGGTTAGTTTGAGGTATTA+TGG | - | chr1_3:17109938-17109957 | Msa0107110:CDS | 35.0% |
| ! | AAAGAAAGATCTTGTTTGGG+TGG | - | chr1_3:17109965-17109984 | Msa0107110:intron | 35.0% |
| TGGTGGTTGGAAAATATTCA+GGG | - | chr1_3:17109985-17110004 | Msa0107110:intron | 35.0% | |
| AACTGAATCCTGGATAACTT+AGG | + | chr1_3:17110232-17110251 | None:intergenic | 35.0% | |
| GTTTATGCCTATTGTACAGA+AGG | - | chr1_3:17110387-17110406 | Msa0107110:CDS | 35.0% | |
| GTGTTATGTTTCATCACATC+AGG | + | chr1_3:17110414-17110433 | None:intergenic | 35.0% | |
| TAAAAATGGGGAGAAAGTCA+TGG | - | chr1_3:17110609-17110628 | Msa0107110:CDS | 35.0% | |
| AAAGAATGCAATGTGGAGAT+TGG | - | chr1_3:17110701-17110720 | Msa0107110:CDS | 35.0% | |
| TTGGAGATACTTGTCTCTTT+AGG | - | chr1_3:17110720-17110739 | Msa0107110:intron | 35.0% | |
| CAATTAGCTGTGCTTCTTTA+AGG | - | chr1_3:17110777-17110796 | Msa0107110:intron | 35.0% | |
| ACTTTCTTCACCTTCTTCAG+TGG | + | chr1_3:17109235-17109254 | None:intergenic | 40.0% | |
| !! | TTTTCTAGCCTTCTTCACCA+TGG | + | chr1_3:17109679-17109698 | None:intergenic | 40.0% |
| GTGGTGGTTGGAAAATATTC+AGG | - | chr1_3:17109984-17110003 | Msa0107110:intron | 40.0% | |
| ATTGTCACAATTACTCGTGC+CGG | - | chr1_3:17110076-17110095 | Msa0107110:intron | 40.0% | |
| GCAATCCCAAAGAAACTACT+AGG | - | chr1_3:17110106-17110125 | Msa0107110:intron | 40.0% | |
| GTTAGTAGCCTAAGTTATCC+AGG | - | chr1_3:17110221-17110240 | Msa0107110:intron | 40.0% | |
| ATCAGGACCTTCTGTACAAT+AGG | + | chr1_3:17110397-17110416 | None:intergenic | 40.0% | |
| GTATTTGCAGAGTGTACCAA+AGG | - | chr1_3:17110547-17110566 | Msa0107110:CDS | 40.0% | |
| GAGAAAGTCATGGTTCGTAA+AGG | - | chr1_3:17110619-17110638 | Msa0107110:CDS | 40.0% | |
| ACTTTCTTCACCTTCTTCAG+TGG | + | chr1_3:17109235-17109254 | None:intergenic | 40.0% | |
| !! | TTTTCTAGCCTTCTTCACCA+TGG | + | chr1_3:17109679-17109698 | None:intergenic | 40.0% |
| GTGGTGGTTGGAAAATATTC+AGG | - | chr1_3:17109984-17110003 | Msa0107110:intron | 40.0% | |
| ATTGTCACAATTACTCGTGC+CGG | - | chr1_3:17110076-17110095 | Msa0107110:intron | 40.0% | |
| GCAATCCCAAAGAAACTACT+AGG | - | chr1_3:17110106-17110125 | Msa0107110:intron | 40.0% | |
| GTTAGTAGCCTAAGTTATCC+AGG | - | chr1_3:17110221-17110240 | Msa0107110:intron | 40.0% | |
| ATCAGGACCTTCTGTACAAT+AGG | + | chr1_3:17110397-17110416 | None:intergenic | 40.0% | |
| GTATTTGCAGAGTGTACCAA+AGG | - | chr1_3:17110547-17110566 | Msa0107110:CDS | 40.0% | |
| GAGAAAGTCATGGTTCGTAA+AGG | - | chr1_3:17110619-17110638 | Msa0107110:CDS | 40.0% | |
| AGGTTGTAACAAAGTGGCCA+TGG | - | chr1_3:17109659-17109678 | Msa0107110:CDS | 45.0% | |
| GGAACTGCAACAATAAGGGT+TGG | - | chr1_3:17109899-17109918 | Msa0107110:CDS | 45.0% | |
| !! | GGTTGGTAATGAAAGGAGTG+TGG | - | chr1_3:17109916-17109935 | Msa0107110:CDS | 45.0% |
| ! | TGGTAATGAAAGGAGTGTGG+AGG | - | chr1_3:17109919-17109938 | Msa0107110:CDS | 45.0% |
| ! | GAAAGATCTTGTTTGGGTGG+TGG | - | chr1_3:17109968-17109987 | Msa0107110:intron | 45.0% |
| !! | CTTTGGGATTGCTTCGTTTC+CGG | + | chr1_3:17110098-17110117 | None:intergenic | 45.0% |
| !! | ATGAGAGTATTCGTGGCTGT+AGG | - | chr1_3:17110651-17110670 | Msa0107110:CDS | 45.0% |
| AGTATTCGTGGCTGTAGGTT+CGG | - | chr1_3:17110656-17110675 | Msa0107110:CDS | 45.0% | |
| ! | GCTGTAGGTTCGGTAAAGAT+TGG | - | chr1_3:17110666-17110685 | Msa0107110:CDS | 45.0% |
| !!! | GCTTTGCCCTTTTTAAGTGC+TGG | - | chr1_3:17110820-17110839 | Msa0107110:intron | 45.0% |
| AGGTTGTAACAAAGTGGCCA+TGG | - | chr1_3:17109659-17109678 | Msa0107110:CDS | 45.0% | |
| GGAACTGCAACAATAAGGGT+TGG | - | chr1_3:17109899-17109918 | Msa0107110:CDS | 45.0% | |
| !! | GGTTGGTAATGAAAGGAGTG+TGG | - | chr1_3:17109916-17109935 | Msa0107110:CDS | 45.0% |
| ! | TGGTAATGAAAGGAGTGTGG+AGG | - | chr1_3:17109919-17109938 | Msa0107110:CDS | 45.0% |
| ! | GAAAGATCTTGTTTGGGTGG+TGG | - | chr1_3:17109968-17109987 | Msa0107110:intron | 45.0% |
| !! | CTTTGGGATTGCTTCGTTTC+CGG | + | chr1_3:17110098-17110117 | None:intergenic | 45.0% |
| !! | ATGAGAGTATTCGTGGCTGT+AGG | - | chr1_3:17110651-17110670 | Msa0107110:CDS | 45.0% |
| AGTATTCGTGGCTGTAGGTT+CGG | - | chr1_3:17110656-17110675 | Msa0107110:CDS | 45.0% | |
| ! | GCTGTAGGTTCGGTAAAGAT+TGG | - | chr1_3:17110666-17110685 | Msa0107110:CDS | 45.0% |
| !!! | GCTTTGCCCTTTTTAAGTGC+TGG | - | chr1_3:17110820-17110839 | Msa0107110:intron | 45.0% |
| !!! | ATAAAAATATGTTTTTTTTA+TGG | - | chr1_3:17109500-17109519 | Msa0107110:intron | 5.0% |
| !!! | TTATAATTTTTTTATGAAAA+AGG | - | chr1_3:17110169-17110188 | Msa0107110:intron | 5.0% |
| !!! | ATAAAAATATGTTTTTTTTA+TGG | - | chr1_3:17109500-17109519 | Msa0107110:intron | 5.0% |
| !!! | TTATAATTTTTTTATGAAAA+AGG | - | chr1_3:17110169-17110188 | Msa0107110:intron | 5.0% |
| GATGAGGAAGCCACTGAAGA+AGG | - | chr1_3:17109222-17109241 | Msa0107110:intron | 50.0% | |
| CAAAGTGGCCATGGTGAAGA+AGG | - | chr1_3:17109668-17109687 | Msa0107110:CDS | 50.0% | |
| !! | GGAGTGTGGAGGTTAGTTTG+AGG | - | chr1_3:17109930-17109949 | Msa0107110:CDS | 50.0% |
| ! | GATCTTGTTTGGGTGGTGGT+TGG | - | chr1_3:17109972-17109991 | Msa0107110:intron | 50.0% |
| TTTGGTGAAGAACACAGCCC+CGG | - | chr1_3:17110443-17110462 | Msa0107110:CDS | 50.0% | |
| GATGAGGAAGCCACTGAAGA+AGG | - | chr1_3:17109222-17109241 | Msa0107110:intron | 50.0% | |
| CAAAGTGGCCATGGTGAAGA+AGG | - | chr1_3:17109668-17109687 | Msa0107110:CDS | 50.0% | |
| !! | GGAGTGTGGAGGTTAGTTTG+AGG | - | chr1_3:17109930-17109949 | Msa0107110:CDS | 50.0% |
| ! | GATCTTGTTTGGGTGGTGGT+TGG | - | chr1_3:17109972-17109991 | Msa0107110:intron | 50.0% |
| TTTGGTGAAGAACACAGCCC+CGG | - | chr1_3:17110443-17110462 | Msa0107110:CDS | 50.0% | |
| ! | GGTGCTGAAGCCACTGAAGA+AGG | - | chr1_3:17109189-17109208 | Msa0107110:CDS | 55.0% |
| ! | GGTGCTGAAGCCACTGAAGA+AGG | - | chr1_3:17109189-17109208 | Msa0107110:CDS | 55.0% |
| GTGAAGAACACAGCCCCGGT+AGG | - | chr1_3:17110447-17110466 | Msa0107110:CDS | 60.0% | |
| GTGAAGAACACAGCCCCGGT+AGG | - | chr1_3:17110447-17110466 | Msa0107110:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 17108760 | 17110881 | 17108760 | ID=Msa0107110;Name=Msa0107110 |
| chr1_3 | mRNA | 17108760 | 17110881 | 17108760 | ID=Msa0107110-mRNA-1;Parent=Msa0107110;Name=Msa0107110-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.8|0.66|1|1|1|6|76|388 |
| chr1_3 | exon | 17108760 | 17109084 | 17108760 | ID=Msa0107110-mRNA-1:exon:6476;Parent=Msa0107110-mRNA-1 |
| chr1_3 | exon | 17109177 | 17109235 | 17109177 | ID=Msa0107110-mRNA-1:exon:6475;Parent=Msa0107110-mRNA-1 |
| chr1_3 | exon | 17109514 | 17109787 | 17109514 | ID=Msa0107110-mRNA-1:exon:6474;Parent=Msa0107110-mRNA-1 |
| chr1_3 | exon | 17109862 | 17109980 | 17109862 | ID=Msa0107110-mRNA-1:exon:6473;Parent=Msa0107110-mRNA-1 |
| chr1_3 | exon | 17110314 | 17110722 | 17110314 | ID=Msa0107110-mRNA-1:exon:6472;Parent=Msa0107110-mRNA-1 |
| chr1_3 | exon | 17110825 | 17110881 | 17110825 | ID=Msa0107110-mRNA-1:exon:6471;Parent=Msa0107110-mRNA-1 |
| chr1_3 | CDS | 17110825 | 17110881 | 17110825 | ID=Msa0107110-mRNA-1:cds;Parent=Msa0107110-mRNA-1 |
| chr1_3 | CDS | 17110314 | 17110722 | 17110314 | ID=Msa0107110-mRNA-1:cds;Parent=Msa0107110-mRNA-1 |
| chr1_3 | CDS | 17109862 | 17109980 | 17109862 | ID=Msa0107110-mRNA-1:cds;Parent=Msa0107110-mRNA-1 |
| chr1_3 | CDS | 17109514 | 17109787 | 17109514 | ID=Msa0107110-mRNA-1:cds;Parent=Msa0107110-mRNA-1 |
| chr1_3 | CDS | 17109177 | 17109235 | 17109177 | ID=Msa0107110-mRNA-1:cds;Parent=Msa0107110-mRNA-1 |
| chr1_3 | CDS | 17108836 | 17109084 | 17108836 | ID=Msa0107110-mRNA-1:cds;Parent=Msa0107110-mRNA-1 |
| chr1_3 | three_prime_UTR | 17108760 | 17108835 | 17108760 | ID=Msa0107110-mRNA-1:three_prime_utr;Parent=Msa0107110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
