Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107130 | A0A072U9K2 | 46.364 | 440 | 137 | 9 | 1 | 343 | 33 | 470 | 4.80e-105 | 331 |
| Msa0107130 | A0A072U9K2 | 67.871 | 249 | 71 | 3 | 252 | 493 | 224 | 470 | 4.74e-107 | 336 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0107130 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107130 | MtrunA17_Chr6g0476171 | 57.028 | 249 | 60 | 4 | 252 | 493 | 37 | 245 | 1.55e-85 | 263 |
| Msa0107130 | MtrunA17_Chr6g0476171 | 42.279 | 272 | 95 | 7 | 106 | 343 | 2 | 245 | 3.98e-54 | 182 |
| Msa0107130 | MtrunA17_Chr6g0476181 | 55.921 | 152 | 20 | 1 | 1 | 105 | 1 | 152 | 9.50e-46 | 157 |
| Msa0107130 | MtrunA17_Chr1g0162161 | 57.143 | 140 | 25 | 1 | 1 | 105 | 3 | 142 | 5.13e-45 | 155 |
| Msa0107130 | MtrunA17_Chr1g0163131 | 35.507 | 276 | 111 | 6 | 1 | 211 | 33 | 306 | 6.99e-44 | 157 |
| Msa0107130 | MtrunA17_Chr1g0163131 | 45.455 | 88 | 46 | 1 | 406 | 493 | 221 | 306 | 4.32e-16 | 79.0 |
| Msa0107130 | MtrunA17_Chr1g0163101 | 55.797 | 138 | 28 | 2 | 1 | 105 | 32 | 169 | 6.67e-41 | 145 |
| Msa0107130 | MtrunA17_Chr1g0163141 | 90.000 | 70 | 7 | 0 | 1 | 70 | 10 | 79 | 6.08e-40 | 142 |
| Msa0107130 | MtrunA17_Chr1g0163181 | 27.400 | 427 | 207 | 13 | 2 | 343 | 21 | 429 | 2.57e-39 | 147 |
| Msa0107130 | MtrunA17_Chr1g0163181 | 33.457 | 269 | 151 | 11 | 233 | 493 | 181 | 429 | 1.49e-31 | 126 |
| Msa0107130 | MtrunA17_Chr1g0163261 | 35.612 | 278 | 117 | 9 | 2 | 224 | 25 | 295 | 5.03e-36 | 135 |
| Msa0107130 | MtrunA17_Chr1g0163261 | 44.086 | 93 | 42 | 4 | 270 | 355 | 205 | 294 | 1.86e-13 | 71.2 |
| Msa0107130 | MtrunA17_Chr1g0163201 | 26.585 | 410 | 195 | 12 | 2 | 342 | 19 | 391 | 1.98e-35 | 136 |
| Msa0107130 | MtrunA17_Chr1g0163201 | 35.931 | 231 | 96 | 8 | 270 | 493 | 207 | 392 | 3.06e-30 | 122 |
| Msa0107130 | MtrunA17_Chr1g0163111 | 35.600 | 250 | 117 | 10 | 252 | 493 | 15 | 228 | 2.27e-35 | 131 |
| Msa0107130 | MtrunA17_Chr1g0163111 | 27.711 | 249 | 126 | 9 | 130 | 346 | 5 | 231 | 2.02e-18 | 84.3 |
| Msa0107130 | MtrunA17_Chr1g0163121 | 74.667 | 75 | 19 | 0 | 1 | 75 | 10 | 84 | 1.77e-34 | 126 |
| Msa0107130 | MtrunA17_Chr1g0163081 | 52.239 | 134 | 32 | 2 | 1 | 103 | 5 | 137 | 2.36e-34 | 126 |
| Msa0107130 | MtrunA17_Chr1g0163231 | 34.831 | 267 | 102 | 8 | 2 | 210 | 25 | 277 | 5.45e-33 | 127 |
| Msa0107130 | MtrunA17_Chr1g0163231 | 42.105 | 95 | 35 | 2 | 262 | 342 | 189 | 277 | 9.25e-12 | 65.9 |
| Msa0107130 | MtrunA17_Chr1g0163251 | 32.131 | 305 | 155 | 8 | 2 | 256 | 21 | 323 | 8.34e-33 | 129 |
| Msa0107130 | MtrunA17_Chr1g0163251 | 40.000 | 120 | 62 | 4 | 243 | 355 | 175 | 291 | 1.58e-14 | 75.5 |
| Msa0107130 | MtrunA17_Chr1g0163151 | 33.473 | 239 | 107 | 7 | 262 | 493 | 28 | 221 | 9.42e-32 | 121 |
| Msa0107130 | MtrunA17_Chr1g0163161 | 50.000 | 128 | 27 | 2 | 14 | 105 | 1 | 127 | 1.21e-29 | 112 |
| Msa0107130 | MtrunA17_Chr1g0171611 | 32.932 | 249 | 119 | 8 | 2 | 210 | 25 | 265 | 4.31e-29 | 116 |
| Msa0107130 | MtrunA17_Chr1g0171611 | 43.333 | 90 | 41 | 2 | 262 | 342 | 177 | 265 | 3.89e-12 | 67.0 |
| Msa0107130 | MtrunA17_Chr1g0162151 | 30.204 | 245 | 88 | 9 | 261 | 492 | 32 | 206 | 3.10e-20 | 89.4 |
| Msa0107130 | MtrunA17_Chr1g0162151 | 46.667 | 75 | 39 | 1 | 149 | 223 | 57 | 130 | 6.78e-14 | 70.9 |
| Msa0107130 | MtrunA17_Chr1g0163091 | 47.525 | 101 | 43 | 4 | 262 | 355 | 33 | 130 | 2.78e-19 | 85.1 |
| Msa0107130 | MtrunA17_Chr1g0163091 | 36.296 | 135 | 56 | 3 | 114 | 223 | 1 | 130 | 1.73e-15 | 74.3 |
| Msa0107130 | MtrunA17_Chr7g0233531 | 27.341 | 267 | 139 | 8 | 1 | 214 | 1 | 265 | 4.71e-18 | 84.3 |
| Msa0107130 | MtrunA17_Chr1g0163241 | 45.238 | 84 | 44 | 2 | 2 | 83 | 23 | 106 | 2.11e-16 | 77.0 |
| Msa0107130 | MtrunA17_Chr7g0233541 | 26.502 | 283 | 138 | 10 | 1 | 214 | 1 | 282 | 3.36e-16 | 79.3 |
| Msa0107130 | MtrunA17_Chr5g0419211 | 37.755 | 98 | 48 | 3 | 267 | 355 | 8 | 101 | 1.22e-13 | 67.4 |
| Msa0107130 | MtrunA17_Chr1g0163191 | 40.476 | 84 | 48 | 2 | 2 | 83 | 21 | 104 | 6.10e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 90 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGAATATGCGGGCAATTT+TGG | 0.164513 | 1_3:-17140847 | Msa0107130:CDS |
| TAGCTTCACTCTCATATTAT+TGG | 0.182224 | 1_3:-17143012 | Msa0107130:CDS |
| TTTGGAAGTTTAAGAGATAT+TGG | 0.253059 | 1_3:+17145040 | None:intergenic |
| ATGGTATTTGGCTTCAAAAT+TGG | 0.298035 | 1_3:-17144979 | Msa0107130:CDS |
| CTATCACCTTCAACGTGATA+TGG | 0.333665 | 1_3:+17144202 | None:intergenic |
| AGTTTAAGAGATATTGGATT+TGG | 0.342240 | 1_3:+17145046 | None:intergenic |
| CTCTGGACATGATTCCTTTG+TGG | 0.350591 | 1_3:+17143537 | None:intergenic |
| TGCAACGCAGTGATGGTATT+TGG | 0.352991 | 1_3:-17144991 | Msa0107130:CDS |
| AAGAAGCATGGTATATTTAG+TGG | 0.374789 | 1_3:-17140520 | Msa0107130:CDS |
| AATCTGACCCTCCTTTGTAT+TGG | 0.385935 | 1_3:+17144912 | None:intergenic |
| TATAATGAACATCTCGACTA+TGG | 0.388378 | 1_3:-17140445 | Msa0107130:CDS |
| TTCCGAGCCTGGTTCCTTTG+TGG | 0.399802 | 1_3:+17142381 | None:intergenic |
| GACAACACCCGTAAAAGATA+TGG | 0.404989 | 1_3:-17140866 | Msa0107130:CDS |
| TTGCAAAGGCTAATGGAAAC+CGG | 0.406149 | 1_3:-17143106 | Msa0107130:CDS |
| GACATGATTCCTTTGTGGTT+GGG | 0.406491 | 1_3:+17143542 | None:intergenic |
| GGACATGATTCCTTTGTGGT+TGG | 0.429402 | 1_3:+17143541 | None:intergenic |
| TATCTCTCTACAAAATTCCT+TGG | 0.444892 | 1_3:+17145082 | None:intergenic |
| GGTCAGTGTGCAAAATGAAT+TGG | 0.447786 | 1_3:-17145015 | Msa0107130:CDS |
| TTAGAAGTGTTGGTGAGGAC+AGG | 0.455257 | 1_3:-17143723 | Msa0107130:CDS |
| AGCAATGCCATTTGAGTTGG+CGG | 0.456539 | 1_3:+17144703 | None:intergenic |
| ATATCTCTTAAACTTCCAAA+TGG | 0.460593 | 1_3:-17145037 | Msa0107130:CDS |
| TGCTTCTTCAACAGCTCACT+TGG | 0.461685 | 1_3:+17140535 | None:intergenic |
| AAGAGAACCGCCAACTCAAA+TGG | 0.462516 | 1_3:-17144710 | Msa0107130:CDS |
| GAATTTACATGAGATGTTCA+AGG | 0.464486 | 1_3:-17140676 | Msa0107130:CDS |
| AAGGAACATGACTTGAAAGT+TGG | 0.470859 | 1_3:-17143625 | Msa0107130:CDS |
| GACTATGGTTGGTTCACTAA+AGG | 0.474605 | 1_3:-17140430 | Msa0107130:CDS |
| TGAGAGTAGGGGAAGGAACA+TGG | 0.483751 | 1_3:-17140483 | Msa0107130:CDS |
| ATAATACCTTGAAACTGCTC+TGG | 0.488121 | 1_3:+17143520 | None:intergenic |
| TGTGAGAGATTGCAAAGTAA+AGG | 0.489991 | 1_3:-17140395 | Msa0107130:CDS |
| AGTGAAACTAGGATTCTCAT+TGG | 0.490637 | 1_3:+17144237 | None:intergenic |
| TATCTCTTAAACTTCCAAAT+GGG | 0.498661 | 1_3:-17145036 | Msa0107130:CDS |
| ATAGTAATCGTGAATGAAAG+TGG | 0.499531 | 1_3:+17142412 | None:intergenic |
| AGTGAAGCTAGGATTCTCAT+TGG | 0.504117 | 1_3:+17143025 | None:intergenic |
| AACCACAAAGGAACCAGGCT+CGG | 0.517483 | 1_3:-17142383 | Msa0107130:CDS |
| TTTGGCTTCAAAATTGGAAG+AGG | 0.520115 | 1_3:-17144973 | Msa0107130:CDS |
| TAATGGAAACACAGGAGGCA+TGG | 0.520474 | 1_3:-17144317 | Msa0107130:CDS |
| TGTGCAAAATCATGTGTTCA+AGG | 0.521657 | 1_3:-17140341 | Msa0107130:CDS |
| ATAGTAATTGTGAATGATAG+TGG | 0.521706 | 1_3:+17143568 | None:intergenic |
| TATTCTTTCGAAAACCAACT+AGG | 0.522446 | 1_3:+17142625 | None:intergenic |
| ATTCTCATTGGGATGCTCAA+TGG | 0.528590 | 1_3:+17144249 | None:intergenic |
| CCAGGCTCGGAAAAGTTTCA+AGG | 0.529291 | 1_3:-17142370 | Msa0107130:intron |
| AGTAGCAATGCCATTTGAGT+TGG | 0.533991 | 1_3:+17144700 | None:intergenic |
| GTGAAGCTAGGATTCTCATT+GGG | 0.534567 | 1_3:+17143026 | None:intergenic |
| GTGAAACTAGGATTCTCATT+GGG | 0.534567 | 1_3:+17144238 | None:intergenic |
| AGAGATTGCAAAGTAAAGGC+TGG | 0.538378 | 1_3:-17140391 | Msa0107130:CDS |
| AAGGCAACAATTAGAAGTGT+TGG | 0.542696 | 1_3:-17142580 | Msa0107130:CDS |
| AAGGCAACAATTAGAAGTGT+TGG | 0.542696 | 1_3:-17143733 | Msa0107130:CDS |
| TCATGTCCAGAGCAGTTTCA+AGG | 0.542874 | 1_3:-17143526 | Msa0107130:intron |
| AATGGAAACACAGGAGGCAT+GGG | 0.543418 | 1_3:-17144316 | Msa0107130:CDS |
| TACATGAATGAGTTATTGCA+AGG | 0.543984 | 1_3:-17142604 | Msa0107130:CDS |
| ATGAACATCTCGACTATGGT+TGG | 0.544359 | 1_3:-17140441 | Msa0107130:CDS |
| ATTCCGTGGAGTTGAGAGTA+GGG | 0.547073 | 1_3:-17140495 | Msa0107130:CDS |
| GTCAGTGTGCAAAATGAATT+GGG | 0.549331 | 1_3:-17145014 | Msa0107130:CDS |
| TGAAACAGGCGATACCTAGT+TGG | 0.550112 | 1_3:-17142639 | Msa0107130:intron |
| TGTTCTTGCAGATGATTCCA+AGG | 0.559130 | 1_3:-17145099 | None:intergenic |
| TGCAAAGGCTAATGGAAACC+GGG | 0.564594 | 1_3:-17143105 | Msa0107130:CDS |
| ATCTCAACCACAAAGGAACC+AGG | 0.564790 | 1_3:-17142388 | Msa0107130:CDS |
| TATATTTAGTGGAAATTCCG+TGG | 0.570238 | 1_3:-17140509 | Msa0107130:CDS |
| AATTAGAAGTGTTGGTGAGG+AGG | 0.570785 | 1_3:-17142572 | Msa0107130:CDS |
| ATGGTTGGTTCACTAAAGGT+TGG | 0.573713 | 1_3:-17140426 | Msa0107130:CDS |
| GTAAAAGATATGGAATATGC+GGG | 0.574921 | 1_3:-17140856 | Msa0107130:CDS |
| TTATTGGCATGTCATGTTGA+AGG | 0.578517 | 1_3:-17142996 | Msa0107130:intron |
| AATAATATGAGAGTGAAGCT+AGG | 0.582815 | 1_3:+17143014 | None:intergenic |
| GTGTTGGTGAGGACAGGGTA+TGG | 0.583705 | 1_3:-17143717 | Msa0107130:CDS |
| TAGAAGTGTTGGTGAGGACA+GGG | 0.584202 | 1_3:-17143722 | Msa0107130:CDS |
| AATTCCGTGGAGTTGAGAGT+AGG | 0.585424 | 1_3:-17140496 | Msa0107130:CDS |
| GATAATATGAGAGTGAAACT+AGG | 0.591398 | 1_3:+17144226 | None:intergenic |
| TTGTCAATGTTAGTCCGTTG+AGG | 0.593883 | 1_3:+17144665 | None:intergenic |
| AACAATTAGAAGTGTTGGTG+AGG | 0.594775 | 1_3:-17142575 | Msa0107130:CDS |
| GCAGAGGCTAATGGAAACAC+AGG | 0.596384 | 1_3:-17144325 | Msa0107130:intron |
| CGTAAAAGATATGGAATATG+CGG | 0.600766 | 1_3:-17140857 | Msa0107130:CDS |
| AACAATTAGAAGTGTTGGTG+AGG | 0.601806 | 1_3:-17143728 | Msa0107130:CDS |
| CTACTACTGTTACACCTCAA+CGG | 0.609207 | 1_3:-17144679 | Msa0107130:CDS |
| AGTGAGCTGTTGAAGAAGCA+TGG | 0.617628 | 1_3:-17140532 | Msa0107130:CDS |
| AATTGGGTGCAACGCAGTGA+TGG | 0.620819 | 1_3:-17144998 | Msa0107130:CDS |
| TACTATTATCCCAACCACAA+AGG | 0.624953 | 1_3:-17143551 | Msa0107130:CDS |
| AAACTAAAAGATCTCCGCAT+CGG | 0.625099 | 1_3:+17144936 | None:intergenic |
| TTCCCCTACTCTCAACTCCA+CGG | 0.627106 | 1_3:+17140492 | None:intergenic |
| GGAAGGAACATGGTTTGTAG+AGG | 0.629163 | 1_3:-17140473 | Msa0107130:CDS |
| CGGGAACATAACTTGCAAGT+CGG | 0.642213 | 1_3:-17142469 | Msa0107130:CDS |
| GAATGAGTTATTGCAAGGGA+AGG | 0.643476 | 1_3:-17142599 | Msa0107130:CDS |
| TTTGCAAGTTTGCTCCGATG+CGG | 0.646883 | 1_3:-17144950 | Msa0107130:CDS |
| TACTATCATCTCAACCACAA+AGG | 0.651551 | 1_3:-17142395 | Msa0107130:CDS |
| TTCCGTGGAGTTGAGAGTAG+GGG | 0.660437 | 1_3:-17140494 | Msa0107130:CDS |
| ACATGAATGAGTTATTGCAA+GGG | 0.661417 | 1_3:-17142603 | Msa0107130:CDS |
| GTGGAGTTGAGAGTAGGGGA+AGG | 0.685462 | 1_3:-17140490 | Msa0107130:CDS |
| TCTTATAACATCATCAGACA+AGG | 0.698207 | 1_3:-17140652 | Msa0107130:intron |
| GAGGCTAATGGAAACACAGG+AGG | 0.702704 | 1_3:-17144322 | Msa0107130:CDS |
| TGGACATGTGCAGAAAACCA+AGG | 0.707757 | 1_3:-17140907 | Msa0107130:intron |
| TTGGTGAGGAGGATAGAACA+TGG | 0.724838 | 1_3:-17142561 | Msa0107130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTATTTTAATTATCACT+AGG | + | chr1_3:17141984-17142003 | None:intergenic | 10.0% |
| !! | AAAATATACATTAATAAAGT+GGG | + | chr1_3:17142177-17142196 | None:intergenic | 10.0% |
| !! | AAAAATATACATTAATAAAG+TGG | + | chr1_3:17142178-17142197 | None:intergenic | 10.0% |
| !!! | AAAACTTCAAAAATTATTTT+CGG | + | chr1_3:17142291-17142310 | None:intergenic | 10.0% |
| !! | TTATTGAATAAATTTACTTT+AGG | + | chr1_3:17142633-17142652 | None:intergenic | 10.0% |
| !!! | TAAAATATACAAATTTTTCA+AGG | - | chr1_3:17144286-17144305 | Msa0107130:CDS | 10.0% |
| !!! | CTAAGATTAATTTTTATATA+CGG | - | chr1_3:17144345-17144364 | Msa0107130:intron | 10.0% |
| !! | TAAACAGATGAATAATTAAA+AGG | + | chr1_3:17140833-17140852 | None:intergenic | 15.0% |
| !!! | CAAATGTGTAAAATATTTTA+AGG | - | chr1_3:17143185-17143204 | Msa0107130:intron | 15.0% |
| !!! | ATATTTTAAGGTTTAAATCT+TGG | - | chr1_3:17143197-17143216 | Msa0107130:intron | 15.0% |
| !! | TGCTTGTAATAAATTAATTA+AGG | + | chr1_3:17143721-17143740 | None:intergenic | 15.0% |
| !!! | CTATTTTATTTTACAGTTAT+TGG | + | chr1_3:17144103-17144122 | None:intergenic | 15.0% |
| !!! | TTAGTATTTTCAATGTCATT+AGG | + | chr1_3:17140669-17140688 | None:intergenic | 20.0% |
| !!! | AATTTGTATGGATTAAAAAG+TGG | + | chr1_3:17140920-17140939 | None:intergenic | 20.0% |
| !!! | TAAAAACTATTTTCAGCATT+TGG | + | chr1_3:17141063-17141082 | None:intergenic | 20.0% |
| !! | TATTACTGAAAAAGTAGTAT+AGG | + | chr1_3:17141254-17141273 | None:intergenic | 20.0% |
| !! | TATTAACAAGAAAGACATTT+GGG | + | chr1_3:17141355-17141374 | None:intergenic | 20.0% |
| !! | ACTAATAGAAAACATATTCA+AGG | - | chr1_3:17141393-17141412 | Msa0107130:intron | 20.0% |
| !!! | TTGATTTTCTTTTTCTTGAA+GGG | + | chr1_3:17142011-17142030 | None:intergenic | 20.0% |
| !!! | ATTGATTTTCTTTTTCTTGA+AGG | + | chr1_3:17142012-17142031 | None:intergenic | 20.0% |
| !!! | ATTTGTATGGATTAAAAAGT+GGG | + | chr1_3:17140919-17140938 | None:intergenic | 20.0% |
| !!! | AATTTGTATGGATTAAAAAG+TGG | + | chr1_3:17140920-17140939 | None:intergenic | 20.0% |
| !!! | TAATTTTTGAAGTTTTGCAA+AGG | - | chr1_3:17142295-17142314 | Msa0107130:intron | 20.0% |
| !! | TTCAATACAACTATTAACAA+AGG | + | chr1_3:17142581-17142600 | None:intergenic | 20.0% |
| !! | TACTAACAAAAACATATTCA+AGG | - | chr1_3:17142607-17142626 | Msa0107130:CDS | 20.0% |
| !!! | GAGAAAGAAGTTTATTTTAA+TGG | + | chr1_3:17143695-17143714 | None:intergenic | 20.0% |
| !!! | GATTTTAGTCATTCTAATAA+TGG | - | chr1_3:17144210-17144229 | Msa0107130:intron | 20.0% |
| !!! | TTTAAATATGTTTTTTGTCC+TGG | + | chr1_3:17144397-17144416 | None:intergenic | 20.0% |
| !! | AACAAAGAAAACATAGTTTA+AGG | + | chr1_3:17144692-17144711 | None:intergenic | 20.0% |
| !! | TTTATTCATATATATGCAGT+TGG | - | chr1_3:17144849-17144868 | Msa0107130:intron | 20.0% |
| ! | AGTTTAAGAGATATTGGATT+TGG | + | chr1_3:17140372-17140391 | None:intergenic | 25.0% |
| ! | TTTGGAAGTTTAAGAGATAT+TGG | + | chr1_3:17140378-17140397 | None:intergenic | 25.0% |
| ! | ATATCTCTTAAACTTCCAAA+TGG | - | chr1_3:17140378-17140397 | Msa0107130:CDS | 25.0% |
| ! | TATCTCTTAAACTTCCAAAT+GGG | - | chr1_3:17140379-17140398 | Msa0107130:CDS | 25.0% |
| !!! | CTTTTAGTTTTCCAATACAA+AGG | - | chr1_3:17140492-17140511 | Msa0107130:CDS | 25.0% |
| !! | CAAAATTTGAGATGAACTAA+GGG | + | chr1_3:17140881-17140900 | None:intergenic | 25.0% |
| !! | ATGTACTTTGGTAATTTGTA+TGG | + | chr1_3:17140932-17140951 | None:intergenic | 25.0% |
| ! | AGAACTAAAAACATGTACTT+TGG | + | chr1_3:17140944-17140963 | None:intergenic | 25.0% |
| !!! | TAGTTTTTAAAGTTTTGCAG+AGG | - | chr1_3:17141074-17141093 | Msa0107130:intron | 25.0% |
| ! | ATTAACAAGAAAGACATTTG+GGG | + | chr1_3:17141354-17141373 | None:intergenic | 25.0% |
| ! | CTATTAACAAGAAAGACATT+TGG | + | chr1_3:17141356-17141375 | None:intergenic | 25.0% |
| ! | ATATGAATGAGTTATTGCAA+GGG | - | chr1_3:17141659-17141678 | Msa0107130:intron | 25.0% |
| ! | ATAGTAATTGTGAATGATAG+TGG | + | chr1_3:17141850-17141869 | None:intergenic | 25.0% |
| !! | TGATTTTCTTTTTCTTGAAG+GGG | + | chr1_3:17142010-17142029 | None:intergenic | 25.0% |
| !!! | ATAAAGACATTGATTTAGCT+GGG | + | chr1_3:17142072-17142091 | None:intergenic | 25.0% |
| !!! | AATAAAGACATTGATTTAGC+TGG | + | chr1_3:17142073-17142092 | None:intergenic | 25.0% |
| ! | CACTATTACTGAGAAAAAAA+AGG | + | chr1_3:17142472-17142491 | None:intergenic | 25.0% |
| ! | AAACAAAAGAGAAAACGTAT+AGG | - | chr1_3:17142659-17142678 | Msa0107130:intron | 25.0% |
| !! | ATCCAGAATAAATTTTCGAA+TGG | - | chr1_3:17142900-17142919 | Msa0107130:intron | 25.0% |
| !! | TCCAGAATAAATTTTCGAAT+GGG | - | chr1_3:17142901-17142920 | Msa0107130:intron | 25.0% |
| !! | TTTGATTGATTGTAGTTTGT+TGG | + | chr1_3:17143169-17143188 | None:intergenic | 25.0% |
| ! | ATGTTAATGTTACTGTCATT+AGG | - | chr1_3:17143315-17143334 | Msa0107130:intron | 25.0% |
| ! | TGTTAATGTTACTGTCATTA+GGG | - | chr1_3:17143316-17143335 | Msa0107130:intron | 25.0% |
| ! | CATAACAAATACTTGTTCAA+CGG | - | chr1_3:17143379-17143398 | Msa0107130:intron | 25.0% |
| ! | ACAAAAACAACAGTAATAAG+TGG | + | chr1_3:17143512-17143531 | None:intergenic | 25.0% |
| !!! | ATTGTCATGTTTACCTTTTT+TGG | - | chr1_3:17143649-17143668 | Msa0107130:CDS | 25.0% |
| ! | AATAGAAAAAATGACTGATG+TGG | - | chr1_3:17144118-17144137 | Msa0107130:intron | 25.0% |
| ! | TTAAACACACTATCATCTAT+TGG | + | chr1_3:17144145-17144164 | None:intergenic | 25.0% |
| !! | AATAGATGATAGTGTGTTTA+AGG | - | chr1_3:17144144-17144163 | Msa0107130:intron | 25.0% |
| !! | ATAGATGATAGTGTGTTTAA+GGG | - | chr1_3:17144145-17144164 | Msa0107130:intron | 25.0% |
| !!! | TACAAAAACACATGGTTTTA+GGG | - | chr1_3:17144612-17144631 | Msa0107130:intron | 25.0% |
| TATCTCTCTACAAAATTCCT+TGG | + | chr1_3:17140336-17140355 | None:intergenic | 30.0% | |
| ! | GGAATTTTGTAGAGAGATAT+TGG | - | chr1_3:17140337-17140356 | Msa0107130:CDS | 30.0% |
| ! | ATGGTATTTGGCTTCAAAAT+TGG | - | chr1_3:17140436-17140455 | Msa0107130:CDS | 30.0% |
| !! | TTAGTTTTCCAATACAAAGG+AGG | - | chr1_3:17140495-17140514 | Msa0107130:CDS | 30.0% |
| ! | TAGTTTTCCAATACAAAGGA+GGG | - | chr1_3:17140496-17140515 | Msa0107130:CDS | 30.0% |
| ! | CCAAAATTTGAGATGAACTA+AGG | + | chr1_3:17140882-17140901 | None:intergenic | 30.0% |
| ! | CCTTAGTTCATCTCAAATTT+TGG | - | chr1_3:17140879-17140898 | Msa0107130:CDS | 30.0% |
| ! | AACTATTTTCAGCATTTGGA+AGG | + | chr1_3:17141059-17141078 | None:intergenic | 30.0% |
| GATAATATGAGAGTGAAACT+AGG | + | chr1_3:17141192-17141211 | None:intergenic | 30.0% | |
| AACTAGAAGAAGAGACATTT+AGG | - | chr1_3:17141498-17141517 | Msa0107130:intron | 30.0% | |
| TATTCTTTCGAAAACCAACT+AGG | + | chr1_3:17141638-17141657 | None:intergenic | 30.0% | |
| CATATGAATGAGTTATTGCA+AGG | - | chr1_3:17141658-17141677 | Msa0107130:intron | 30.0% | |
| !! | ATGCGCTTTTGTAATTTGTA+TGG | + | chr1_3:17142140-17142159 | None:intergenic | 30.0% |
| ! | ATCTGAAGGGTACAAAAAAA+AGG | + | chr1_3:17142267-17142286 | None:intergenic | 30.0% |
| ! | AATTATTTTCGGCATCTGAA+GGG | + | chr1_3:17142280-17142299 | None:intergenic | 30.0% |
| ! | AAATTATTTTCGGCATCTGA+AGG | + | chr1_3:17142281-17142300 | None:intergenic | 30.0% |
| ! | TTTTTGTGCATTTCTTATCC+CGG | + | chr1_3:17142331-17142350 | None:intergenic | 30.0% |
| AAATGCACAAAAACTGAAGA+TGG | - | chr1_3:17142338-17142357 | Msa0107130:intron | 30.0% | |
| AATGCACAAAAACTGAAGAT+GGG | - | chr1_3:17142339-17142358 | Msa0107130:intron | 30.0% | |
| AATAATATGAGAGTGAAGCT+AGG | + | chr1_3:17142404-17142423 | None:intergenic | 30.0% | |
| TAGCTTCACTCTCATATTAT+TGG | - | chr1_3:17142403-17142422 | Msa0107130:CDS | 30.0% | |
| TGTTGAAGGTGATAATAGAT+TGG | - | chr1_3:17142433-17142452 | Msa0107130:CDS | 30.0% | |
| ACTATACGAACTGATTGTAT+TGG | - | chr1_3:17142528-17142547 | Msa0107130:intron | 30.0% | |
| CTATTAACAAAGGAGACATT+TGG | + | chr1_3:17142571-17142590 | None:intergenic | 30.0% | |
| TTGATCTTCAAATGTGTCTT+TGG | + | chr1_3:17141475-17141494 | None:intergenic | 30.0% | |
| TATTCTTTCGAAAACCAACT+AGG | + | chr1_3:17141638-17141657 | None:intergenic | 30.0% | |
| TACATGAATGAGTTATTGCA+AGG | - | chr1_3:17142811-17142830 | Msa0107130:intron | 30.0% | |
| ACATGAATGAGTTATTGCAA+GGG | - | chr1_3:17142812-17142831 | Msa0107130:intron | 30.0% | |
| TCCCATTCGAAAATTTATTC+TGG | + | chr1_3:17142905-17142924 | None:intergenic | 30.0% | |
| ! | ATAAATTTTCGAATGGGAAG+TGG | - | chr1_3:17142907-17142926 | Msa0107130:intron | 30.0% |
| ATAGTAATCGTGAATGAAAG+TGG | + | chr1_3:17143006-17143025 | None:intergenic | 30.0% | |
| AACGCAATAAAATAGAGCTT+GGG | + | chr1_3:17143283-17143302 | None:intergenic | 30.0% | |
| !! | AGTATTTGTTATGGTTACGT+CGG | + | chr1_3:17143372-17143391 | None:intergenic | 30.0% |
| ! | CGTTGAACAAGTATTTGTTA+TGG | + | chr1_3:17143381-17143400 | None:intergenic | 30.0% |
| AAACAACAGTAATAAGTGGA+CGG | + | chr1_3:17143508-17143527 | None:intergenic | 30.0% | |
| GAGATATGAAAAGCCAAAAA+AGG | + | chr1_3:17143665-17143684 | None:intergenic | 30.0% | |
| ! | GCATATTCCATATCTTTTAC+GGG | + | chr1_3:17144559-17144578 | None:intergenic | 30.0% |
| ! | CGCATATTCCATATCTTTTA+CGG | + | chr1_3:17144560-17144579 | None:intergenic | 30.0% |
| CGTAAAAGATATGGAATATG+CGG | - | chr1_3:17144558-17144577 | Msa0107130:intron | 30.0% | |
| GTAAAAGATATGGAATATGC+GGG | - | chr1_3:17144559-17144578 | Msa0107130:intron | 30.0% | |
| !! | ATTTTGGAGATGGAATTTCA+AGG | - | chr1_3:17144584-17144603 | Msa0107130:intron | 30.0% |
| ! | GTACAAAAACACATGGTTTT+AGG | - | chr1_3:17144611-17144630 | Msa0107130:intron | 30.0% |
| !!! | ACAAAAACACATGGTTTTAG+GGG | - | chr1_3:17144613-17144632 | Msa0107130:intron | 30.0% |
| GAATTTACATGAGATGTTCA+AGG | - | chr1_3:17144739-17144758 | Msa0107130:intron | 30.0% | |
| TCTTATAACATCATCAGACA+AGG | - | chr1_3:17144763-17144782 | Msa0107130:intron | 30.0% | |
| ! | AAGAAGCATGGTATATTTAG+TGG | - | chr1_3:17144895-17144914 | Msa0107130:intron | 30.0% |
| TATATTTAGTGGAAATTCCG+TGG | - | chr1_3:17144906-17144925 | Msa0107130:CDS | 30.0% | |
| TATAATGAACATCTCGACTA+TGG | - | chr1_3:17144970-17144989 | Msa0107130:CDS | 30.0% | |
| GTCAGTGTGCAAAATGAATT+GGG | - | chr1_3:17140401-17140420 | Msa0107130:CDS | 35.0% | |
| ! | TTTGGCTTCAAAATTGGAAG+AGG | - | chr1_3:17140442-17140461 | Msa0107130:CDS | 35.0% |
| AAACTAAAAGATCTCCGCAT+CGG | + | chr1_3:17140482-17140501 | None:intergenic | 35.0% | |
| ! | CTTACCAGAAACTTTTTGCT+GGG | + | chr1_3:17140799-17140818 | None:intergenic | 35.0% |
| ! | ACTTACCAGAAACTTTTTGC+TGG | + | chr1_3:17140800-17140819 | None:intergenic | 35.0% |
| ! | TAAAGTTTTGCAGAGGCTAA+TGG | - | chr1_3:17141081-17141100 | Msa0107130:intron | 35.0% |
| GTGAAACTAGGATTCTCATT+GGG | + | chr1_3:17141180-17141199 | None:intergenic | 35.0% | |
| AGTGAAACTAGGATTCTCAT+TGG | + | chr1_3:17141181-17141200 | None:intergenic | 35.0% | |
| TTATCACCATATCACGTTGA+AGG | - | chr1_3:17141207-17141226 | Msa0107130:intron | 35.0% | |
| ! | AGAGGCTTTCATTTTACTAG+AGG | - | chr1_3:17141299-17141318 | Msa0107130:intron | 35.0% |
| ATTCATGCATGAAATGTGCA+AGG | + | chr1_3:17141568-17141587 | None:intergenic | 35.0% | |
| TTTATACCATGACCTGAAAC+AGG | - | chr1_3:17141607-17141626 | Msa0107130:intron | 35.0% | |
| ! | AAGGCAACAATTAGAAGTGT+TGG | - | chr1_3:17141682-17141701 | Msa0107130:intron | 35.0% |
| !! | AACAATTAGAAGTGTTGGTG+AGG | - | chr1_3:17141687-17141706 | Msa0107130:intron | 35.0% |
| !!! | AGTAGTTTTGTAATGACGCT+TGG | - | chr1_3:17141751-17141770 | Msa0107130:intron | 35.0% |
| !! | TGGTTGGAAGTCATTTTCAA+AGG | - | chr1_3:17141771-17141790 | Msa0107130:intron | 35.0% |
| AAGGAACATGACTTGAAAGT+TGG | - | chr1_3:17141790-17141809 | Msa0107130:intron | 35.0% | |
| TACTATTATCCCAACCACAA+AGG | - | chr1_3:17141864-17141883 | Msa0107130:intron | 35.0% | |
| ATAATACCTTGAAACTGCTC+TGG | + | chr1_3:17141898-17141917 | None:intergenic | 35.0% | |
| !!! | AAAAGCGCATGTTTTAATCC+TGG | - | chr1_3:17142150-17142169 | Msa0107130:intron | 35.0% |
| TACATTAATAAAGTGGGTCC+AGG | + | chr1_3:17142171-17142190 | None:intergenic | 35.0% | |
| ! | TGAAGTTTTGCAAAGGCTAA+TGG | - | chr1_3:17142302-17142321 | Msa0107130:intron | 35.0% |
| TTATTGGCATGTCATGTTGA+AGG | - | chr1_3:17142419-17142438 | Msa0107130:CDS | 35.0% | |
| TTTAAACCATGACCTGAAAC+AGG | - | chr1_3:17142762-17142781 | Msa0107130:intron | 35.0% | |
| ! | AAGGCAACAATTAGAAGTGT+TGG | - | chr1_3:17141682-17141701 | Msa0107130:intron | 35.0% |
| !! | AACAATTAGAAGTGTTGGTG+AGG | - | chr1_3:17141687-17141706 | Msa0107130:intron | 35.0% |
| TACTATCATCTCAACCACAA+AGG | - | chr1_3:17143020-17143039 | Msa0107130:CDS | 35.0% | |
| ACGCAATAAAATAGAGCTTG+GGG | + | chr1_3:17143282-17143301 | None:intergenic | 35.0% | |
| CAACGCAATAAAATAGAGCT+TGG | + | chr1_3:17143284-17143303 | None:intergenic | 35.0% | |
| ! | CAAGCTCTATTTTATTGCGT+TGG | - | chr1_3:17143282-17143301 | Msa0107130:intron | 35.0% |
| ACAAATACTTGTTCAACGGT+CGG | - | chr1_3:17143383-17143402 | Msa0107130:intron | 35.0% | |
| TGAGACAAATCAGTTTCACA+TGG | - | chr1_3:17143430-17143449 | Msa0107130:intron | 35.0% | |
| CAAATCAGTTTCACATGGTT+TGG | - | chr1_3:17143435-17143454 | Msa0107130:intron | 35.0% | |
| TTCTGTCAAAATGGAATGAG+CGG | - | chr1_3:17143473-17143492 | Msa0107130:intron | 35.0% | |
| AACAACAGTAATAAGTGGAC+GGG | + | chr1_3:17143507-17143526 | None:intergenic | 35.0% | |
| AGAGAGAAGAAACAAGAACA+GGG | - | chr1_3:17143773-17143792 | Msa0107130:intron | 35.0% | |
| !! | ATGAGGTTTTATGACAGCAA+GGG | + | chr1_3:17144036-17144055 | None:intergenic | 35.0% |
| GTCATAAAACCTCATGATGA+AGG | - | chr1_3:17144041-17144060 | Msa0107130:intron | 35.0% | |
| AACCTCATGATGAAGGATAA+TGG | - | chr1_3:17144048-17144067 | Msa0107130:intron | 35.0% | |
| ! | TCATGATGAAGGATAATGGT+GGG | - | chr1_3:17144052-17144071 | Msa0107130:intron | 35.0% |
| CTAAAAGTGATATATCTGCC+AGG | - | chr1_3:17144376-17144395 | Msa0107130:intron | 35.0% | |
| ! | GTGTTGTCTCTGATTTTTCT+TGG | + | chr1_3:17144537-17144556 | None:intergenic | 35.0% |
| CACACACATAGCTATATACA+TGG | + | chr1_3:17144813-17144832 | None:intergenic | 35.0% | |
| TGTGAGAGATTGCAAAGTAA+AGG | - | chr1_3:17145020-17145039 | Msa0107130:CDS | 35.0% | |
| TGTGCAAAATCATGTGTTCA+AGG | - | chr1_3:17145074-17145093 | Msa0107130:CDS | 35.0% | |
| ! | ATTTTGCACACTGACCCATT+TGG | + | chr1_3:17140396-17140415 | None:intergenic | 40.0% |
| GGTCAGTGTGCAAAATGAAT+TGG | - | chr1_3:17140400-17140419 | Msa0107130:CDS | 40.0% | |
| AATCTGACCCTCCTTTGTAT+TGG | + | chr1_3:17140506-17140525 | None:intergenic | 40.0% | |
| ! | AGTAGCAATGCCATTTGAGT+TGG | + | chr1_3:17140718-17140737 | None:intergenic | 40.0% |
| CTACTACTGTTACACCTCAA+CGG | - | chr1_3:17140736-17140755 | Msa0107130:intron | 40.0% | |
| TTGTCAATGTTAGTCCGTTG+AGG | + | chr1_3:17140753-17140772 | None:intergenic | 40.0% | |
| ATTCTCATTGGGATGCTCAA+TGG | + | chr1_3:17141169-17141188 | None:intergenic | 40.0% | |
| CTATCACCTTCAACGTGATA+TGG | + | chr1_3:17141216-17141235 | None:intergenic | 40.0% | |
| CGTTGAAGGTGATAGAAGAT+TGG | - | chr1_3:17141221-17141240 | Msa0107130:intron | 40.0% | |
| TTTGTACCAAACTGTGTGAG+AGG | - | chr1_3:17141281-17141300 | Msa0107130:intron | 40.0% | |
| GAATGAGTTATTGCAAGGGA+AGG | - | chr1_3:17141663-17141682 | Msa0107130:intron | 40.0% | |
| ! | GTTTTGTAATGACGCTTGGT+TGG | - | chr1_3:17141755-17141774 | Msa0107130:intron | 40.0% |
| GACATGATTCCTTTGTGGTT+GGG | + | chr1_3:17141876-17141895 | None:intergenic | 40.0% | |
| TTGCAAAGGCTAATGGAAAC+CGG | - | chr1_3:17142309-17142328 | Msa0107130:intron | 40.0% | |
| GTGAAGCTAGGATTCTCATT+GGG | + | chr1_3:17142392-17142411 | None:intergenic | 40.0% | |
| AGTGAAGCTAGGATTCTCAT+TGG | + | chr1_3:17142393-17142412 | None:intergenic | 40.0% | |
| GAATGAGTTATTGCAAGGGA+AGG | - | chr1_3:17141663-17141682 | Msa0107130:intron | 40.0% | |
| !! | AATTAGAAGTGTTGGTGAGG+AGG | - | chr1_3:17141690-17141709 | Msa0107130:intron | 40.0% |
| ! | ATTTTCGAATGGGAAGTGGT+TGG | - | chr1_3:17142911-17142930 | Msa0107130:intron | 40.0% |
| !! | GTGGTTGGAAGTCATTTTCA+CGG | - | chr1_3:17142926-17142945 | Msa0107130:intron | 40.0% |
| !! | TGGTTGGAAGTCATTTTCAC+GGG | - | chr1_3:17142927-17142946 | Msa0107130:intron | 40.0% |
| CGCAATAAAATAGAGCTTGG+GGG | + | chr1_3:17143281-17143300 | None:intergenic | 40.0% | |
| GTTATGGTTACGTCGGATTT+CGG | + | chr1_3:17143365-17143384 | None:intergenic | 40.0% | |
| ! | CAGTTTCACATGGTTTGGAA+CGG | - | chr1_3:17143440-17143459 | Msa0107130:intron | 40.0% |
| ACATACATTGGACAGTGTGT+AGG | + | chr1_3:17143596-17143615 | None:intergenic | 40.0% | |
| ! | GTTTGATGGCACACATACAT+TGG | + | chr1_3:17143608-17143627 | None:intergenic | 40.0% |
| ATGTATGTGTGCCATCAAAC+AGG | - | chr1_3:17143608-17143627 | Msa0107130:CDS | 40.0% | |
| TGTATGTGTGCCATCAAACA+GGG | - | chr1_3:17143609-17143628 | Msa0107130:CDS | 40.0% | |
| ! | TTGTTTCTTCTCTCTGGTAG+TGG | + | chr1_3:17143768-17143787 | None:intergenic | 40.0% |
| ! | CTGTTCTTGTTTCTTCTCTC+TGG | + | chr1_3:17143774-17143793 | None:intergenic | 40.0% |
| CAGAGAGAAGAAACAAGAAC+AGG | - | chr1_3:17143772-17143791 | Msa0107130:intron | 40.0% | |
| GAGATGAGAGATATACAGAG+AGG | - | chr1_3:17143814-17143833 | Msa0107130:intron | 40.0% | |
| !! | TGAGGTTTTATGACAGCAAG+GGG | + | chr1_3:17144035-17144054 | None:intergenic | 40.0% |
| !! | CATGAGGTTTTATGACAGCA+AGG | + | chr1_3:17144037-17144056 | None:intergenic | 40.0% |
| CACCATTATCCTTCATCATG+AGG | + | chr1_3:17144053-17144072 | None:intergenic | 40.0% | |
| ! | CTCATGATGAAGGATAATGG+TGG | - | chr1_3:17144051-17144070 | Msa0107130:intron | 40.0% |
| GTTGTGGGTAGTGTAAATTG+TGG | - | chr1_3:17144074-17144093 | Msa0107130:intron | 40.0% | |
| AGGGATCTACTGAAGAAGTT+GGG | + | chr1_3:17144478-17144497 | None:intergenic | 40.0% | |
| ACATGTCCACAAACTTCTCA+GGG | + | chr1_3:17144497-17144516 | None:intergenic | 40.0% | |
| ! | CTGATTTTTCTTGGACTCCT+TGG | + | chr1_3:17144528-17144547 | None:intergenic | 40.0% |
| GACAACACCCGTAAAAGATA+TGG | - | chr1_3:17144549-17144568 | Msa0107130:intron | 40.0% | |
| ! | ATGGAATATGCGGGCAATTT+TGG | - | chr1_3:17144568-17144587 | Msa0107130:intron | 40.0% |
| AGGAGCTGTACAAAAACACA+TGG | - | chr1_3:17144604-17144623 | Msa0107130:intron | 40.0% | |
| ATGAACATCTCGACTATGGT+TGG | - | chr1_3:17144974-17144993 | Msa0107130:CDS | 40.0% | |
| ! | GACTATGGTTGGTTCACTAA+AGG | - | chr1_3:17144985-17145004 | Msa0107130:CDS | 40.0% |
| ! | ATGGTTGGTTCACTAAAGGT+TGG | - | chr1_3:17144989-17145008 | Msa0107130:CDS | 40.0% |
| AGAGATTGCAAAGTAAAGGC+TGG | - | chr1_3:17145024-17145043 | Msa0107130:CDS | 40.0% | |
| TGCAACGCAGTGATGGTATT+TGG | - | chr1_3:17140424-17140443 | Msa0107130:CDS | 45.0% | |
| ! | TTTGCAAGTTTGCTCCGATG+CGG | - | chr1_3:17140465-17140484 | Msa0107130:CDS | 45.0% |
| ! | GCGGTTCTCTTTTTCTTGAG+GGG | + | chr1_3:17140696-17140715 | None:intergenic | 45.0% |
| ! | GGCGGTTCTCTTTTTCTTGA+GGG | + | chr1_3:17140697-17140716 | None:intergenic | 45.0% |
| ! | TGGCGGTTCTCTTTTTCTTG+AGG | + | chr1_3:17140698-17140717 | None:intergenic | 45.0% |
| AAGAGAACCGCCAACTCAAA+TGG | - | chr1_3:17140705-17140724 | Msa0107130:intron | 45.0% | |
| !! | AGCAATGCCATTTGAGTTGG+CGG | + | chr1_3:17140715-17140734 | None:intergenic | 45.0% |
| GCAACCCAGCAAAAAGTTTC+TGG | - | chr1_3:17140792-17140811 | Msa0107130:intron | 45.0% | |
| TAATGGAAACACAGGAGGCA+TGG | - | chr1_3:17141098-17141117 | Msa0107130:intron | 45.0% | |
| ! | AATGGAAACACAGGAGGCAT+GGG | - | chr1_3:17141099-17141118 | Msa0107130:intron | 45.0% |
| TGAAAGCCTCTCACACAGTT+TGG | + | chr1_3:17141290-17141309 | None:intergenic | 45.0% | |
| AACTAGGTAACGCCTGTTTC+AGG | + | chr1_3:17141622-17141641 | None:intergenic | 45.0% | |
| TGAAACAGGCGTTACCTAGT+TGG | - | chr1_3:17141621-17141640 | Msa0107130:intron | 45.0% | |
| !! | TTAGAAGTGTTGGTGAGGAC+AGG | - | chr1_3:17141692-17141711 | Msa0107130:intron | 45.0% |
| !! | TAGAAGTGTTGGTGAGGACA+GGG | - | chr1_3:17141693-17141712 | Msa0107130:intron | 45.0% |
| GGACATGATTCCTTTGTGGT+TGG | + | chr1_3:17141877-17141896 | None:intergenic | 45.0% | |
| CTCTGGACATGATTCCTTTG+TGG | + | chr1_3:17141881-17141900 | None:intergenic | 45.0% | |
| TCATGTCCAGAGCAGTTTCA+AGG | - | chr1_3:17141889-17141908 | Msa0107130:intron | 45.0% | |
| TGCAAAGGCTAATGGAAACC+GGG | - | chr1_3:17142310-17142329 | Msa0107130:intron | 45.0% | |
| ! | AACTAGGTATCGCCTGTTTC+AGG | + | chr1_3:17142777-17142796 | None:intergenic | 45.0% |
| TGAAACAGGCGATACCTAGT+TGG | - | chr1_3:17142776-17142795 | Msa0107130:intron | 45.0% | |
| TTGGTGAGGAGGATAGAACA+TGG | - | chr1_3:17142854-17142873 | Msa0107130:intron | 45.0% | |
| ! | CGGGAACATAACTTGCAAGT+CGG | - | chr1_3:17142946-17142965 | Msa0107130:intron | 45.0% |
| ATCTCAACCACAAAGGAACC+AGG | - | chr1_3:17143027-17143046 | Msa0107130:CDS | 45.0% | |
| CGAAAGCGGTTCTGTCAAAA+TGG | - | chr1_3:17143464-17143483 | Msa0107130:intron | 45.0% | |
| ! | CAGTAATAAGTGGACGGGTT+CGG | + | chr1_3:17143502-17143521 | None:intergenic | 45.0% |
| TCAAGACACACCCTGTTTGA+TGG | + | chr1_3:17143622-17143641 | None:intergenic | 45.0% | |
| !! | TTCTTCTCTCTGGTAGTGGT+GGG | + | chr1_3:17143764-17143783 | None:intergenic | 45.0% |
| !! | TTTCTTCTCTCTGGTAGTGG+TGG | + | chr1_3:17143765-17143784 | None:intergenic | 45.0% |
| GGTCTAACGGAATAACAGGT+GGG | + | chr1_3:17143895-17143914 | None:intergenic | 45.0% | |
| GACCGTTTCAACGTCAGTTT+CGG | + | chr1_3:17143927-17143946 | None:intergenic | 45.0% | |
| GAAACTGACGTTGAAACGGT+CGG | - | chr1_3:17143926-17143945 | Msa0107130:intron | 45.0% | |
| AAACTGACGTTGAAACGGTC+GGG | - | chr1_3:17143927-17143946 | Msa0107130:intron | 45.0% | |
| GGTTCACGTGTTCTGATCTA+CGG | - | chr1_3:17143953-17143972 | Msa0107130:intron | 45.0% | |
| GTTCACGTGTTCTGATCTAC+GGG | - | chr1_3:17143954-17143973 | Msa0107130:intron | 45.0% | |
| TCTGATCTACGGGTGTTCTT+CGG | - | chr1_3:17143964-17143983 | Msa0107130:intron | 45.0% | |
| TTCTTCGGTGAGCAGTTGTT+GGG | - | chr1_3:17143979-17143998 | Msa0107130:intron | 45.0% | |
| !! | TGAAGGATAATGGTGGGTTG+TGG | - | chr1_3:17144058-17144077 | Msa0107130:intron | 45.0% |
| !! | GAAGGATAATGGTGGGTTGT+GGG | - | chr1_3:17144059-17144078 | Msa0107130:intron | 45.0% |
| GGGATCTACTGAAGAAGTTG+GGG | + | chr1_3:17144477-17144496 | None:intergenic | 45.0% | |
| CAGGGATCTACTGAAGAAGT+TGG | + | chr1_3:17144479-17144498 | None:intergenic | 45.0% | |
| GTAGATCCCTGAGAAGTTTG+TGG | - | chr1_3:17144488-17144507 | Msa0107130:intron | 45.0% | |
| CACATGTCCACAAACTTCTC+AGG | + | chr1_3:17144498-17144517 | None:intergenic | 45.0% | |
| TGGACATGTGCAGAAAACCA+AGG | - | chr1_3:17144508-17144527 | Msa0107130:intron | 45.0% | |
| !! | TATGCGGGCAATTTTGGAGA+TGG | - | chr1_3:17144574-17144593 | Msa0107130:intron | 45.0% |
| TGCTTCTTCAACAGCTCACT+TGG | + | chr1_3:17144883-17144902 | None:intergenic | 45.0% | |
| AGTGAGCTGTTGAAGAAGCA+TGG | - | chr1_3:17144883-17144902 | Msa0107130:intron | 45.0% | |
| AATTCCGTGGAGTTGAGAGT+AGG | - | chr1_3:17144919-17144938 | Msa0107130:CDS | 45.0% | |
| ATTCCGTGGAGTTGAGAGTA+GGG | - | chr1_3:17144920-17144939 | Msa0107130:CDS | 45.0% | |
| ! | GGAAGGAACATGGTTTGTAG+AGG | - | chr1_3:17144942-17144961 | Msa0107130:CDS | 45.0% |
| !! | AAAATATACATAAATAAAAT+GGG | + | chr1_3:17140970-17140989 | None:intergenic | 5.0% |
| !! | AAAAATATACATAAATAAAA+TGG | + | chr1_3:17140971-17140990 | None:intergenic | 5.0% |
| AATTGGGTGCAACGCAGTGA+TGG | - | chr1_3:17140417-17140436 | Msa0107130:CDS | 50.0% | |
| GCAGAGGCTAATGGAAACAC+AGG | - | chr1_3:17141090-17141109 | Msa0107130:intron | 50.0% | |
| GAGGCTAATGGAAACACAGG+AGG | - | chr1_3:17141093-17141112 | Msa0107130:intron | 50.0% | |
| ! | GTAACGCCTGTTTCAGGTCA+TGG | + | chr1_3:17141616-17141635 | None:intergenic | 50.0% |
| TTTGTGCCTAGCTGTGTGAG+AGG | - | chr1_3:17142495-17142514 | Msa0107130:CDS | 50.0% | |
| TGAAAGCCTCTCACACAGCT+AGG | + | chr1_3:17142504-17142523 | None:intergenic | 50.0% | |
| ! | GTATCGCCTGTTTCAGGTCA+TGG | + | chr1_3:17142771-17142790 | None:intergenic | 50.0% |
| AACCACAAAGGAACCAGGCT+CGG | - | chr1_3:17143032-17143051 | Msa0107130:CDS | 50.0% | |
| ! | CCTTGAAACTTTTCCGAGCC+TGG | + | chr1_3:17143048-17143067 | None:intergenic | 50.0% |
| CCAGGCTCGGAAAAGTTTCA+AGG | - | chr1_3:17143045-17143064 | Msa0107130:CDS | 50.0% | |
| TGGTTACGTCGGATTTCGGT+CGG | + | chr1_3:17143361-17143380 | None:intergenic | 50.0% | |
| GTTCAACGGTCGGATGTGTA+CGG | - | chr1_3:17143393-17143412 | Msa0107130:intron | 50.0% | |
| TTCAACGGTCGGATGTGTAC+GGG | - | chr1_3:17143394-17143413 | Msa0107130:intron | 50.0% | |
| ! | TGGTTTGGAACGGACGAAAG+CGG | - | chr1_3:17143450-17143469 | Msa0107130:intron | 50.0% |
| TAACGGAATAACAGGTGGGC+CGG | + | chr1_3:17143891-17143910 | None:intergenic | 50.0% | |
| GGGTCTAACGGAATAACAGG+TGG | + | chr1_3:17143896-17143915 | None:intergenic | 50.0% | |
| GACGGGTCTAACGGAATAAC+AGG | + | chr1_3:17143899-17143918 | None:intergenic | 50.0% | |
| GTTTCAACGTCAGTTTCGGC+GGG | + | chr1_3:17143923-17143942 | None:intergenic | 50.0% | |
| CGTTTCAACGTCAGTTTCGG+CGG | + | chr1_3:17143924-17143943 | None:intergenic | 50.0% | |
| CGCCGAAACTGACGTTGAAA+CGG | - | chr1_3:17143922-17143941 | Msa0107130:intron | 50.0% | |
| GTTCTTCGGTGAGCAGTTGT+TGG | - | chr1_3:17143978-17143997 | Msa0107130:intron | 50.0% | |
| GTGTGTAGAGTGTGTGTTCG+CGG | - | chr1_3:17144169-17144188 | Msa0107130:intron | 50.0% | |
| TTCCGTGGAGTTGAGAGTAG+GGG | - | chr1_3:17144921-17144940 | Msa0107130:CDS | 50.0% | |
| TTCCCCTACTCTCAACTCCA+CGG | + | chr1_3:17144926-17144945 | None:intergenic | 50.0% | |
| TGAGAGTAGGGGAAGGAACA+TGG | - | chr1_3:17144932-17144951 | Msa0107130:CDS | 50.0% | |
| ! | GTGTTGGTGAGGACAGGGTA+TGG | - | chr1_3:17141698-17141717 | Msa0107130:intron | 55.0% |
| TTCCGAGCCTGGTTCCTTTG+TGG | + | chr1_3:17143037-17143056 | None:intergenic | 55.0% | |
| !! | AGCTTGGGGGACTAGCTGAA+GGG | + | chr1_3:17143268-17143287 | None:intergenic | 55.0% |
| ! | TACAACCGAGCCAAAGCACC+CGG | - | chr1_3:17143869-17143888 | Msa0107130:intron | 55.0% |
| AACGGAATAACAGGTGGGCC+GGG | + | chr1_3:17143890-17143909 | None:intergenic | 55.0% | |
| GACGTTGAAACGGTCGGGAA+TGG | - | chr1_3:17143932-17143951 | Msa0107130:intron | 55.0% | |
| GTGGAGTTGAGAGTAGGGGA+AGG | - | chr1_3:17144925-17144944 | Msa0107130:CDS | 55.0% | |
| !! | GAGCTTGGGGGACTAGCTGA+AGG | + | chr1_3:17143269-17143288 | None:intergenic | 60.0% |
| GGTCGGATGTGTACGGGCTT+CGG | - | chr1_3:17143400-17143419 | Msa0107130:intron | 60.0% | |
| ACGTCAGTTTCGGCGGGTGA+CGG | + | chr1_3:17143917-17143936 | None:intergenic | 60.0% | |
| TGACAGCAAGGGGTGAGCAC+CGG | + | chr1_3:17144025-17144044 | None:intergenic | 60.0% | |
| TCTCACACTTCACGCGCGCG+TGG | + | chr1_3:17143546-17143565 | None:intergenic | 65.0% | |
| AACAGGTGGGCCGGGTGCTT+TGG | + | chr1_3:17143882-17143901 | None:intergenic | 65.0% | |
| !! | TCGGCGGGTGACGGGTCTAA+CGG | + | chr1_3:17143908-17143927 | None:intergenic | 65.0% |
| CGTCAGTTTCGGCGGGTGAC+GGG | + | chr1_3:17143916-17143935 | None:intergenic | 65.0% | |
| ! | CGGTCGGTTACGGGCGGATT+CGG | + | chr1_3:17144005-17144024 | None:intergenic | 65.0% |
| CGAATCCGCCCGTAACCGAC+CGG | - | chr1_3:17144003-17144022 | Msa0107130:intron | 65.0% | |
| !! | GGTGAGCACCGGTCGGTTAC+GGG | + | chr1_3:17144014-17144033 | None:intergenic | 65.0% |
| !! | GGGTGAGCACCGGTCGGTTA+CGG | + | chr1_3:17144015-17144034 | None:intergenic | 65.0% |
| !! | AGCAAGGGGTGAGCACCGGT+CGG | + | chr1_3:17144021-17144040 | None:intergenic | 65.0% |
| GTGGGCCGGGTGCTTTGGCT+CGG | + | chr1_3:17143877-17143896 | None:intergenic | 70.0% | |
| !! | GAGCACCGGTCGGTTACGGG+CGG | + | chr1_3:17144011-17144030 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 17140327 | 17145110 | 17140327 | ID=Msa0107130;Name=Msa0107130 |
| chr1_3 | mRNA | 17140327 | 17145110 | 17140327 | ID=Msa0107130-mRNA-1;Parent=Msa0107130;Name=Msa0107130-mRNA-1;_AED=0.17;_eAED=0.24;_QI=0|0|0|1|0.55|0.3|10|0|493 |
| chr1_3 | exon | 17144901 | 17145110 | 17144901 | ID=Msa0107130-mRNA-1:exon:6494;Parent=Msa0107130-mRNA-1 |
| chr1_3 | exon | 17144624 | 17144729 | 17144624 | ID=Msa0107130-mRNA-1:exon:6493;Parent=Msa0107130-mRNA-1 |
| chr1_3 | exon | 17144216 | 17144343 | 17144216 | ID=Msa0107130-mRNA-1:exon:6492;Parent=Msa0107130-mRNA-1 |
| chr1_3 | exon | 17143527 | 17143752 | 17143527 | ID=Msa0107130-mRNA-1:exon:6491;Parent=Msa0107130-mRNA-1 |
| chr1_3 | exon | 17142997 | 17143130 | 17142997 | ID=Msa0107130-mRNA-1:exon:6490;Parent=Msa0107130-mRNA-1 |
| chr1_3 | exon | 17142553 | 17142653 | 17142553 | ID=Msa0107130-mRNA-1:exon:6489;Parent=Msa0107130-mRNA-1 |
| chr1_3 | exon | 17142371 | 17142531 | 17142371 | ID=Msa0107130-mRNA-1:exon:6488;Parent=Msa0107130-mRNA-1 |
| chr1_3 | exon | 17140803 | 17140916 | 17140803 | ID=Msa0107130-mRNA-1:exon:6487;Parent=Msa0107130-mRNA-1 |
| chr1_3 | exon | 17140653 | 17140711 | 17140653 | ID=Msa0107130-mRNA-1:exon:6486;Parent=Msa0107130-mRNA-1 |
| chr1_3 | exon | 17140327 | 17140569 | 17140327 | ID=Msa0107130-mRNA-1:exon:6485;Parent=Msa0107130-mRNA-1 |
| chr1_3 | CDS | 17144901 | 17145110 | 17144901 | ID=Msa0107130-mRNA-1:cds;Parent=Msa0107130-mRNA-1 |
| chr1_3 | CDS | 17144624 | 17144729 | 17144624 | ID=Msa0107130-mRNA-1:cds;Parent=Msa0107130-mRNA-1 |
| chr1_3 | CDS | 17144216 | 17144343 | 17144216 | ID=Msa0107130-mRNA-1:cds;Parent=Msa0107130-mRNA-1 |
| chr1_3 | CDS | 17143527 | 17143752 | 17143527 | ID=Msa0107130-mRNA-1:cds;Parent=Msa0107130-mRNA-1 |
| chr1_3 | CDS | 17142997 | 17143130 | 17142997 | ID=Msa0107130-mRNA-1:cds;Parent=Msa0107130-mRNA-1 |
| chr1_3 | CDS | 17142553 | 17142653 | 17142553 | ID=Msa0107130-mRNA-1:cds;Parent=Msa0107130-mRNA-1 |
| chr1_3 | CDS | 17142371 | 17142531 | 17142371 | ID=Msa0107130-mRNA-1:cds;Parent=Msa0107130-mRNA-1 |
| chr1_3 | CDS | 17140803 | 17140916 | 17140803 | ID=Msa0107130-mRNA-1:cds;Parent=Msa0107130-mRNA-1 |
| chr1_3 | CDS | 17140653 | 17140711 | 17140653 | ID=Msa0107130-mRNA-1:cds;Parent=Msa0107130-mRNA-1 |
| chr1_3 | CDS | 17140327 | 17140569 | 17140327 | ID=Msa0107130-mRNA-1:cds;Parent=Msa0107130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
