Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107170 | XP_024630388.1 | 88.554 | 332 | 35 | 1 | 1 | 329 | 1 | 332 | 0.0 | 572 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107170 | sp|Q8L3W1|VRN1_ARATH | 24.405 | 336 | 184 | 9 | 7 | 275 | 4 | 336 | 5.82e-18 | 87.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107170 | A0A072VFJ7 | 79.765 | 341 | 57 | 3 | 1 | 329 | 1 | 341 | 0.0 | 530 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0107170 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107170 | MtrunA17_Chr1g0163181 | 70.370 | 378 | 61 | 5 | 1 | 329 | 1 | 376 | 0.0 | 511 |
| Msa0107170 | MtrunA17_Chr1g0163201 | 78.882 | 322 | 56 | 3 | 20 | 329 | 18 | 339 | 2.60e-174 | 491 |
| Msa0107170 | MtrunA17_Chr1g0163251 | 52.959 | 338 | 119 | 6 | 1 | 322 | 1 | 314 | 6.23e-114 | 337 |
| Msa0107170 | MtrunA17_Chr1g0163191 | 84.906 | 159 | 21 | 1 | 1 | 156 | 1 | 159 | 1.26e-83 | 251 |
| Msa0107170 | MtrunA17_Chr1g0163151 | 71.687 | 166 | 47 | 0 | 162 | 327 | 1 | 166 | 4.70e-79 | 242 |
| Msa0107170 | MtrunA17_Chr1g0163261 | 42.953 | 298 | 152 | 3 | 1 | 285 | 1 | 293 | 6.79e-77 | 239 |
| Msa0107170 | MtrunA17_Chr1g0163231 | 45.455 | 286 | 140 | 8 | 1 | 276 | 1 | 280 | 1.56e-76 | 238 |
| Msa0107170 | MtrunA17_Chr1g0171611 | 45.704 | 291 | 120 | 8 | 1 | 276 | 1 | 268 | 1.94e-73 | 230 |
| Msa0107170 | MtrunA17_Chr1g0163111 | 64.444 | 180 | 47 | 4 | 162 | 329 | 1 | 175 | 6.75e-68 | 214 |
| Msa0107170 | MtrunA17_Chr1g0163241 | 63.636 | 154 | 43 | 3 | 1 | 153 | 7 | 148 | 2.92e-60 | 192 |
| Msa0107170 | MtrunA17_Chr7g0233521 | 35.075 | 268 | 155 | 8 | 21 | 275 | 2 | 263 | 1.87e-33 | 125 |
| Msa0107170 | MtrunA17_Chr7g0233561 | 32.000 | 300 | 166 | 8 | 9 | 275 | 18 | 312 | 4.24e-33 | 125 |
| Msa0107170 | MtrunA17_Chr1g0163131 | 32.759 | 290 | 156 | 11 | 14 | 274 | 27 | 306 | 6.34e-33 | 125 |
| Msa0107170 | MtrunA17_Chr3g0131891 | 32.624 | 282 | 164 | 8 | 14 | 275 | 28 | 303 | 1.00e-32 | 125 |
| Msa0107170 | MtrunA17_Chr7g0233541 | 33.449 | 287 | 151 | 10 | 21 | 275 | 2 | 280 | 4.27e-32 | 122 |
| Msa0107170 | MtrunA17_Chr8g0390841 | 28.339 | 307 | 173 | 11 | 14 | 285 | 48 | 342 | 1.73e-30 | 122 |
| Msa0107170 | MtrunA17_Chr1g0163091 | 41.958 | 143 | 77 | 2 | 162 | 299 | 1 | 142 | 8.38e-30 | 112 |
| Msa0107170 | MtrunA17_Chr1g0163101 | 43.151 | 146 | 68 | 5 | 14 | 155 | 26 | 160 | 1.66e-28 | 109 |
| Msa0107170 | MtrunA17_Chr1g0208771 | 29.452 | 292 | 165 | 10 | 20 | 279 | 12 | 294 | 2.90e-27 | 112 |
| Msa0107170 | MtrunA17_Chr7g0233531 | 33.813 | 278 | 145 | 10 | 21 | 275 | 2 | 263 | 3.19e-27 | 108 |
| Msa0107170 | MtrunA17_Chr3g0103171 | 26.592 | 267 | 176 | 6 | 20 | 273 | 5 | 264 | 2.50e-25 | 103 |
| Msa0107170 | MtrunA17_Chr1g0162151 | 41.085 | 129 | 71 | 1 | 162 | 285 | 1 | 129 | 5.04e-25 | 101 |
| Msa0107170 | MtrunA17_Chr3g0103181 | 26.429 | 280 | 178 | 9 | 9 | 273 | 12 | 278 | 1.11e-24 | 102 |
| Msa0107170 | MtrunA17_Chr1g0163121 | 43.636 | 110 | 59 | 2 | 19 | 126 | 9 | 117 | 2.87e-24 | 97.1 |
| Msa0107170 | MtrunA17_Chr1g0162161 | 38.028 | 142 | 69 | 5 | 21 | 155 | 4 | 133 | 2.95e-24 | 97.8 |
| Msa0107170 | MtrunA17_Chr1g0163141 | 38.168 | 131 | 80 | 1 | 17 | 147 | 7 | 136 | 1.75e-23 | 96.3 |
| Msa0107170 | MtrunA17_Chr6g0476181 | 42.276 | 123 | 65 | 3 | 21 | 143 | 2 | 118 | 2.69e-23 | 95.1 |
| Msa0107170 | MtrunA17_Chr1g0163221 | 29.181 | 281 | 167 | 10 | 14 | 273 | 20 | 289 | 4.92e-23 | 99.0 |
| Msa0107170 | MtrunA17_Chr4g0067431 | 27.368 | 285 | 173 | 10 | 9 | 261 | 15 | 297 | 9.61e-23 | 97.4 |
| Msa0107170 | MtrunA17_Chr1g0163081 | 40.741 | 108 | 61 | 2 | 21 | 126 | 6 | 112 | 2.28e-22 | 92.0 |
| Msa0107170 | MtrunA17_Chr1g0163071 | 24.490 | 294 | 175 | 6 | 21 | 275 | 2 | 287 | 3.84e-22 | 95.5 |
| Msa0107170 | MtrunA17_Chr7g0233571 | 29.808 | 208 | 122 | 5 | 9 | 192 | 10 | 217 | 6.51e-20 | 87.4 |
| Msa0107170 | MtrunA17_Chr3g0103151 | 36.508 | 126 | 73 | 4 | 9 | 130 | 12 | 134 | 1.06e-19 | 85.1 |
| Msa0107170 | MtrunA17_Chr3g0103191 | 27.586 | 203 | 135 | 6 | 9 | 201 | 12 | 212 | 2.25e-19 | 86.7 |
| Msa0107170 | MtrunA17_Chr6g0476171 | 36.842 | 133 | 82 | 2 | 171 | 301 | 29 | 161 | 5.65e-19 | 85.5 |
| Msa0107170 | MtrunA17_Chr5g0419201 | 31.138 | 167 | 99 | 5 | 14 | 167 | 25 | 188 | 1.28e-18 | 83.2 |
| Msa0107170 | MtrunA17_Chr1g0163161 | 36.522 | 115 | 62 | 2 | 33 | 147 | 1 | 104 | 1.66e-17 | 78.2 |
| Msa0107170 | MtrunA17_Chr6g0467351 | 35.135 | 111 | 69 | 2 | 13 | 120 | 23 | 133 | 4.55e-16 | 76.6 |
| Msa0107170 | MtrunA17_Chr4g0033961 | 35.644 | 101 | 59 | 2 | 7 | 101 | 4 | 104 | 6.79e-13 | 69.7 |
| Msa0107170 | MtrunA17_Chr1g0162441 | 33.663 | 101 | 61 | 2 | 7 | 101 | 5 | 105 | 1.20e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107170 | AT3G18990.1 | 24.405 | 336 | 184 | 9 | 7 | 275 | 4 | 336 | 5.91e-19 | 87.4 |
| Msa0107170 | AT3G18990.2 | 24.189 | 339 | 187 | 9 | 7 | 278 | 4 | 339 | 6.18e-19 | 87.8 |
Find 75 sgRNAs with CRISPR-Local
Find 364 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACACCGTTTGGAAATTTA+AGG | 0.151014 | 1_3:+17172776 | None:intergenic |
| CTTTGGGATTGCTTCGTTTC+CGG | 0.165431 | 1_3:+17171657 | None:intergenic |
| TATTTCTCTGCATATTTCTT+AGG | 0.182822 | 1_3:+17172826 | None:intergenic |
| TTTGCAAAGCCTTTCAAATA+TGG | 0.200041 | 1_3:-17172691 | Msa0107170:CDS |
| TTAAAACCTAGTAGTTTCTT+TGG | 0.230973 | 1_3:+17171640 | None:intergenic |
| ATTGTCCTTTGAGCTTTCTT+TGG | 0.254871 | 1_3:+17172469 | None:intergenic |
| AGAAATATGCAGAGAAATAT+TGG | 0.272878 | 1_3:-17172822 | Msa0107170:CDS |
| TTAATGGAACTGCAACAATA+AGG | 0.277244 | 1_3:-17171858 | Msa0107170:CDS |
| ACATAACACATTCAAGGTTT+TGG | 0.285361 | 1_3:-17171325 | Msa0107170:CDS |
| TGGAGAGTAATGGTGATATT+TGG | 0.287546 | 1_3:-17172735 | Msa0107170:CDS |
| TTTGGAAATTTAAGGAATAT+AGG | 0.302976 | 1_3:+17172784 | None:intergenic |
| AAAGCTCAAAGGACAATAAA+TGG | 0.303877 | 1_3:-17172463 | Msa0107170:CDS |
| ATATTTGGTTTCAAAAGAAT+TGG | 0.305799 | 1_3:-17172720 | Msa0107170:CDS |
| TTACACCAATGGCTATTTCT+TGG | 0.306445 | 1_3:-17171994 | Msa0107170:intron |
| ATAATGAAATGGCTATTTCT+TGG | 0.310042 | 1_3:-17166624 | Msa0107170:intron |
| CTCTTAACTTTCAAATTCAT+TGG | 0.314459 | 1_3:-17172664 | Msa0107170:CDS |
| GTGGTGGTTGGAAAATATTC+AGG | 0.328531 | 1_3:-17171768 | Msa0107170:CDS |
| TTGGAAATTTAAGGAATATA+GGG | 0.346499 | 1_3:+17172785 | None:intergenic |
| CATTAACAGCTTCAGATGTT+TGG | 0.351304 | 1_3:+17172051 | None:intergenic |
| TTATAAAGAAAGATCTTGTT+TGG | 0.355178 | 1_3:-17171791 | Msa0107170:CDS |
| GAGGTTAGTTTGAGGTATTA+TGG | 0.363534 | 1_3:-17171814 | Msa0107170:CDS |
| AATATTATTCTATGAAAATC+TGG | 0.366274 | 1_3:+17172973 | None:intergenic |
| TAAAACCTAGTAGTTTCTTT+GGG | 0.368375 | 1_3:+17171641 | None:intergenic |
| TAATGGAACTGCAACAATAA+GGG | 0.376410 | 1_3:-17171857 | Msa0107170:CDS |
| ATTGTGACAATGAATGAAAA+AGG | 0.410109 | 1_3:+17171688 | None:intergenic |
| TATTTGGTTTCAAAAGAATT+GGG | 0.412169 | 1_3:-17172719 | Msa0107170:CDS |
| ATAATTTATTTCTAAAGTAT+TGG | 0.414924 | 1_3:+17172609 | None:intergenic |
| GTGTTATGTTTCATCACATC+AGG | 0.425287 | 1_3:+17171339 | None:intergenic |
| TATAAAGAAAGATCTTGTTT+GGG | 0.427295 | 1_3:-17171790 | Msa0107170:CDS |
| GATGAAACATAACACATTCA+AGG | 0.454763 | 1_3:-17171331 | Msa0107170:CDS |
| AAGTGATGAAGAGAGTGATA+AGG | 0.461668 | 1_3:-17172500 | Msa0107170:CDS |
| CAAAGTGGCCATGGTGAAGA+AGG | 0.465563 | 1_3:-17172084 | Msa0107170:CDS |
| TTTCATTATAACTTCAAAAG+AGG | 0.474258 | 1_3:+17166638 | None:intergenic |
| TGTCATTATAACTTCAAAAG+AGG | 0.475259 | 1_3:+17172022 | None:intergenic |
| TTAACTTTCAAATTCATTGG+TGG | 0.475675 | 1_3:-17172661 | Msa0107170:CDS |
| CAAAGTGGCTATGGTGAAGA+AGG | 0.484023 | 1_3:-17166706 | Msa0107170:CDS |
| CAGCTTCAGAATGTGCCATT+GGG | 0.486375 | 1_3:+17166673 | None:intergenic |
| GGTGCTGAAGCCACTGAAGA+AGG | 0.489506 | 1_3:-17172562 | Msa0107170:CDS |
| TTCATTATAACTTCAAAAGA+GGG | 0.491118 | 1_3:+17166639 | None:intergenic |
| CCAAAGGAATTTATGAAAAG+AGG | 0.492978 | 1_3:-17171187 | Msa0107170:CDS |
| GCAATCCCAAAGAAACTACT+AGG | 0.493084 | 1_3:-17171646 | Msa0107170:intron |
| ACAGCTTCAGAATGTGCCAT+TGG | 0.501490 | 1_3:+17166672 | None:intergenic |
| GATCTTGTTTGGGTGGTGGT+TGG | 0.501988 | 1_3:-17171780 | Msa0107170:CDS |
| GTCATTATAACTTCAAAAGA+GGG | 0.507540 | 1_3:+17172023 | None:intergenic |
| GGAGTGTGGAGGTTAGTTTG+AGG | 0.513468 | 1_3:-17171822 | Msa0107170:CDS |
| ACTTTCTTTACCTTCTTCAG+TGG | 0.514754 | 1_3:+17172552 | None:intergenic |
| GATGAGGAAGCCACTGAAGA+AGG | 0.517797 | 1_3:-17172529 | Msa0107170:CDS |
| AAGAGATATCCATATTTGAA+AGG | 0.520085 | 1_3:+17172682 | None:intergenic |
| ACTTTCTTCACCTTCTTCAG+TGG | 0.520796 | 1_3:+17172519 | None:intergenic |
| AGGTAGTAACAAAGTGGCTA+TGG | 0.528003 | 1_3:-17166715 | Msa0107170:CDS |
| ATTGTCACAATTACTCGTGC+CGG | 0.532896 | 1_3:-17171676 | Msa0107170:CDS |
| ATATTCCTTAAATTTCCAAA+CGG | 0.536219 | 1_3:-17172781 | Msa0107170:CDS |
| AATGGCAAGAGAAAATTCTC+AGG | 0.536390 | 1_3:-17172445 | Msa0107170:intron |
| AAAGAAAGATCTTGTTTGGG+TGG | 0.538945 | 1_3:-17171787 | Msa0107170:CDS |
| AATATCAAAGCAGTTGATGA+AGG | 0.544297 | 1_3:-17172583 | Msa0107170:CDS |
| GAAAGATCTTGTTTGGGTGG+TGG | 0.546468 | 1_3:-17171784 | Msa0107170:CDS |
| CAATAAGGGTTGGTAATGAA+AGG | 0.551596 | 1_3:-17171843 | Msa0107170:CDS |
| GTAAATTTGAGATGATTCGA+CGG | 0.557247 | 1_3:-17171714 | Msa0107170:CDS |
| TTTGGTGAAGAACACAGCCC+CGG | 0.573521 | 1_3:-17171307 | Msa0107170:intron |
| GGAACTGCAACAATAAGGGT+TGG | 0.581562 | 1_3:-17171853 | Msa0107170:CDS |
| GTATTTGCAGAGTGTACCAA+AGG | 0.583029 | 1_3:-17171203 | Msa0107170:intron |
| ACTTACCAAGAAATAGCCAT+TGG | 0.587587 | 1_3:+17171989 | None:intergenic |
| GAGAAAGTCATGGTTCGTAA+AGG | 0.590660 | 1_3:-17171130 | Msa0107170:intron |
| AGGTTGTAACAAAGTGGCCA+TGG | 0.594476 | 1_3:-17172093 | Msa0107170:CDS |
| CTTTACAGGTTGTAACAAAG+TGG | 0.599398 | 1_3:-17172099 | Msa0107170:intron |
| AGAAGGTAAAGAAAGTGATG+AGG | 0.601536 | 1_3:-17172545 | Msa0107170:CDS |
| TGGTGGTTGGAAAATATTCA+GGG | 0.603185 | 1_3:-17171767 | Msa0107170:CDS |
| ATGACACAATCTTACACCAA+TGG | 0.609025 | 1_3:-17172005 | Msa0107170:CDS |
| TATGCAGAGAAATATTGGAA+AGG | 0.611326 | 1_3:-17172817 | Msa0107170:CDS |
| GGTTGGTAATGAAAGGAGTG+TGG | 0.615653 | 1_3:-17171836 | Msa0107170:CDS |
| TGGTAATGAAAGGAGTGTGG+AGG | 0.642373 | 1_3:-17171833 | Msa0107170:CDS |
| CTTTACAGGTAGTAACAAAG+TGG | 0.644831 | 1_3:-17166721 | Msa0107170:intron |
| TGTTCTCTTGAAAACTCACA+TGG | 0.651484 | 1_3:+17171892 | None:intergenic |
| AAATGCCAAAGAAAGCTCAA+AGG | 0.663329 | 1_3:-17172474 | Msa0107170:CDS |
| GAAGGCTAGAAAATACCCAA+TGG | 0.687317 | 1_3:-17166688 | Msa0107170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAAATATTTTTTTTTAT+TGG | - | chr1_3:17169530-17169549 | Msa0107170:intron | 0.0% |
| !!! | TAAAAATATTTTTTTTTATT+GGG | - | chr1_3:17169531-17169550 | Msa0107170:intron | 0.0% |
| !! | ATATATATATATATATATAT+GGG | + | chr1_3:17171107-17171126 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+TGG | + | chr1_3:17171108-17171127 | None:intergenic | 0.0% |
| !!! | ATAATTTATTTCTAAAGTAT+TGG | + | chr1_3:17166921-17166940 | None:intergenic | 10.0% |
| !! | TATTATATATAAATATCCAA+AGG | + | chr1_3:17168708-17168727 | None:intergenic | 10.0% |
| !! | TTGGATATTTATATATAATA+TGG | - | chr1_3:17168708-17168727 | Msa0107170:intron | 10.0% |
| !!! | TTTAATAACATTTGATTTAT+TGG | - | chr1_3:17169129-17169148 | Msa0107170:intron | 10.0% |
| !!! | TTAATAACATTTGATTTATT+GGG | - | chr1_3:17169130-17169149 | Msa0107170:intron | 10.0% |
| !!! | TGTTAAAAACTTTAATTTTT+TGG | - | chr1_3:17170871-17170890 | Msa0107170:intron | 10.0% |
| !! | TTATAATTATATTTGTTTGT+AGG | + | chr1_3:17170903-17170922 | None:intergenic | 10.0% |
| !! | CAAACAAATATAATTATAAT+TGG | - | chr1_3:17170904-17170923 | Msa0107170:intron | 10.0% |
| !!! | TTAACAATTTGATAATAAAA+AGG | - | chr1_3:17170942-17170961 | Msa0107170:intron | 10.0% |
| !!! | TAACAATTTGATAATAAAAA+GGG | - | chr1_3:17170943-17170962 | Msa0107170:intron | 10.0% |
| !!! | AAAATTTCTTTTAAAATATG+TGG | + | chr1_3:17171545-17171564 | None:intergenic | 10.0% |
| !! | TTAGATATCATAAAAAAAAT+AGG | - | chr1_3:17172694-17172713 | Msa0107170:CDS | 10.0% |
| !!! | TATAATAATCTATTTTGTTT+AGG | + | chr1_3:17172778-17172797 | None:intergenic | 10.0% |
| !! | AATATTATTCTATGAAAATC+TGG | + | chr1_3:17166557-17166576 | None:intergenic | 15.0% |
| !!! | TGTTGAACAAAAAATATTTT+GGG | - | chr1_3:17166769-17166788 | Msa0107170:intron | 15.0% |
| !!! | TATTTTAAGGTTAAGATATT+TGG | - | chr1_3:17166893-17166912 | Msa0107170:intron | 15.0% |
| !!! | AAATATGTTTTTTTTATGGA+AGG | - | chr1_3:17167280-17167299 | Msa0107170:intron | 15.0% |
| !! | ATTATATCTTTAAACTTTAC+AGG | - | chr1_3:17167414-17167433 | Msa0107170:intron | 15.0% |
| !!! | TCAAATATCTCTAAATTTTT+TGG | - | chr1_3:17168105-17168124 | Msa0107170:intron | 15.0% |
| !!! | CAAATATCTCTAAATTTTTT+GGG | - | chr1_3:17168106-17168125 | Msa0107170:intron | 15.0% |
| !! | TAAATATAGAAAGAACTTAT+TGG | - | chr1_3:17169593-17169612 | Msa0107170:intron | 15.0% |
| !! | TGAAAAAAAAATTGTTGATA+TGG | + | chr1_3:17170778-17170797 | None:intergenic | 15.0% |
| !!! | TTCATCAATAGATTTTATAT+TGG | - | chr1_3:17171247-17171266 | Msa0107170:intron | 15.0% |
| !! | AATAGTTTACTTCTAAATAT+TGG | - | chr1_3:17171270-17171289 | Msa0107170:intron | 15.0% |
| !!! | GATATTTGGTTTAAAAAATT+GGG | + | chr1_3:17171383-17171402 | None:intergenic | 15.0% |
| !!! | TGATATTTGGTTTAAAAAAT+TGG | + | chr1_3:17171384-17171403 | None:intergenic | 15.0% |
| !! | CTAAAATCTTTAATTATCTA+TGG | - | chr1_3:17171642-17171661 | Msa0107170:intron | 15.0% |
| !!! | AGATAAAGTAATAATTTTCA+TGG | - | chr1_3:17171797-17171816 | Msa0107170:CDS | 15.0% |
| !!! | GATTTTTTTAAAACTAACAT+AGG | + | chr1_3:17171848-17171867 | None:intergenic | 15.0% |
| !! | ATTATATCTTTAAACTTTAC+AGG | - | chr1_3:17167414-17167433 | Msa0107170:intron | 15.0% |
| !! | GAAATCATACATTAACAATA+GGG | + | chr1_3:17166657-17166676 | None:intergenic | 20.0% |
| !! | AGAAATCATACATTAACAAT+AGG | + | chr1_3:17166658-17166677 | None:intergenic | 20.0% |
| !! | TTGGAAATTTAAGGAATATA+GGG | + | chr1_3:17166745-17166764 | None:intergenic | 20.0% |
| !! | TTTGGAAATTTAAGGAATAT+AGG | + | chr1_3:17166746-17166765 | None:intergenic | 20.0% |
| !! | ATATTCCTTAAATTTCCAAA+CGG | - | chr1_3:17166746-17166765 | Msa0107170:intron | 20.0% |
| !!! | GTGTTGAACAAAAAATATTT+TGG | - | chr1_3:17166768-17166787 | Msa0107170:intron | 20.0% |
| !!! | ATATTTGGTTTCAAAAGAAT+TGG | - | chr1_3:17166807-17166826 | Msa0107170:intron | 20.0% |
| !!! | TATTTGGTTTCAAAAGAATT+GGG | - | chr1_3:17166808-17166827 | Msa0107170:intron | 20.0% |
| !!! | TAAATCATTATTTGAAACAG+TGG | - | chr1_3:17167609-17167628 | Msa0107170:intron | 20.0% |
| !! | TTATAAAGAAAGATCTTGTT+TGG | - | chr1_3:17167736-17167755 | Msa0107170:intron | 20.0% |
| !!! | TATAAAGAAAGATCTTGTTT+GGG | - | chr1_3:17167737-17167756 | Msa0107170:intron | 20.0% |
| !! | TATGAAAAAGGTTATAAGAA+AGG | - | chr1_3:17167956-17167975 | Msa0107170:intron | 20.0% |
| !! | ATGAAAAAGGTTATAAGAAA+GGG | - | chr1_3:17167957-17167976 | Msa0107170:intron | 20.0% |
| !! | TAAACATACAATATACAGTT+AGG | + | chr1_3:17168049-17168068 | None:intergenic | 20.0% |
| !!! | TTTTATGTAATTAATCCTAC+CGG | + | chr1_3:17168242-17168261 | None:intergenic | 20.0% |
| !! | AAATATTGTGGAGTTAAAAA+TGG | - | chr1_3:17168373-17168392 | Msa0107170:intron | 20.0% |
| !! | AATATTGTGGAGTTAAAAAT+GGG | - | chr1_3:17168374-17168393 | Msa0107170:intron | 20.0% |
| !!! | AAGATGTTTTATCTTGAAAA+AGG | - | chr1_3:17168976-17168995 | Msa0107170:intron | 20.0% |
| !!! | ATTTTTTATTTTGCAACACT+TGG | - | chr1_3:17169172-17169191 | Msa0107170:intron | 20.0% |
| !!! | ATATTTTCAATATTTTTGGG+AGG | - | chr1_3:17169236-17169255 | Msa0107170:intron | 20.0% |
| !! | ATTTAAAGGTTGAGATATTA+GGG | + | chr1_3:17169485-17169504 | None:intergenic | 20.0% |
| !! | TATTTAAAGGTTGAGATATT+AGG | + | chr1_3:17169486-17169505 | None:intergenic | 20.0% |
| !!! | TTTTATCGAGATTATTACAA+AGG | + | chr1_3:17169516-17169535 | None:intergenic | 20.0% |
| !!! | AATGTACAAAATTTTAGAGA+AGG | - | chr1_3:17169658-17169677 | Msa0107170:intron | 20.0% |
| !!! | TTTACTTTTTGTATTCTAGT+TGG | + | chr1_3:17169834-17169853 | None:intergenic | 20.0% |
| !! | TCAATAATATGGAATCAATT+GGG | + | chr1_3:17169969-17169988 | None:intergenic | 20.0% |
| !! | TTCAATAATATGGAATCAAT+TGG | + | chr1_3:17169970-17169989 | None:intergenic | 20.0% |
| !! | AAAATGTTTCAACAAATATG+TGG | + | chr1_3:17170086-17170105 | None:intergenic | 20.0% |
| !!! | ACATATTTGTTGAAACATTT+TGG | - | chr1_3:17170085-17170104 | Msa0107170:intron | 20.0% |
| !! | TGAGAAAAAAAATATAGTGT+TGG | + | chr1_3:17170339-17170358 | None:intergenic | 20.0% |
| !! | ACTACACTATTATTAAGAAT+GGG | - | chr1_3:17170452-17170471 | Msa0107170:intron | 20.0% |
| !!! | AAAAGAAATTTTTGACAAGT+AGG | - | chr1_3:17171028-17171047 | Msa0107170:intron | 20.0% |
| !!! | TTAACTTTTAAATACATAGG+TGG | + | chr1_3:17171325-17171344 | None:intergenic | 20.0% |
| !!! | CTCTTAACTTTTAAATACAT+AGG | + | chr1_3:17171328-17171347 | None:intergenic | 20.0% |
| !! | TGTTCAACAAGAAATAATTT+GGG | + | chr1_3:17171420-17171439 | None:intergenic | 20.0% |
| !! | ATAGTACATATTGTAAAAAG+CGG | - | chr1_3:17171759-17171778 | Msa0107170:CDS | 20.0% |
| !! | GTAACATAAAAAAAGAGATA+TGG | + | chr1_3:17172155-17172174 | None:intergenic | 20.0% |
| !!! | AAATATACATCGAATGTTTT+TGG | + | chr1_3:17172530-17172549 | None:intergenic | 20.0% |
| !!! | GGACTATAAATTTTTTAAAG+TGG | - | chr1_3:17172560-17172579 | Msa0107170:CDS | 20.0% |
| !!! | TTTTAAAGTGGTTACTTTAT+TGG | - | chr1_3:17172572-17172591 | Msa0107170:CDS | 20.0% |
| !! | TTCATTATAACTTCAAAAGA+GGG | + | chr1_3:17172891-17172910 | None:intergenic | 20.0% |
| !! | TTTCATTATAACTTCAAAAG+AGG | + | chr1_3:17172892-17172911 | None:intergenic | 20.0% |
| !!! | CTTTTGAAGTTATAATGAAA+TGG | - | chr1_3:17172892-17172911 | Msa0107170:intron | 20.0% |
| ! | TATTTCTCTGCATATTTCTT+AGG | + | chr1_3:17166704-17166723 | None:intergenic | 25.0% |
| ! | AGAAATATGCAGAGAAATAT+TGG | - | chr1_3:17166705-17166724 | Msa0107170:CDS | 25.0% |
| !!! | TGAACAAAAAATATTTTGGG+TGG | - | chr1_3:17166772-17166791 | Msa0107170:intron | 25.0% |
| ! | AAGAGATATCCATATTTGAA+AGG | + | chr1_3:17166848-17166867 | None:intergenic | 25.0% |
| ! | CTCTTAACTTTCAAATTCAT+TGG | - | chr1_3:17166863-17166882 | Msa0107170:intron | 25.0% |
| ! | TTAACTTTCAAATTCATTGG+TGG | - | chr1_3:17166866-17166885 | Msa0107170:intron | 25.0% |
| !!! | AACTTTTAAGAGTTATTCCA+TGG | - | chr1_3:17167158-17167177 | Msa0107170:intron | 25.0% |
| ! | GTCATTATAACTTCAAAAGA+GGG | + | chr1_3:17167507-17167526 | None:intergenic | 25.0% |
| ! | TGTCATTATAACTTCAAAAG+AGG | + | chr1_3:17167508-17167527 | None:intergenic | 25.0% |
| !! | GAACACTTGAAAGATTTTAA+TGG | - | chr1_3:17167653-17167672 | Msa0107170:intron | 25.0% |
| ! | ATTGTGACAATGAATGAAAA+AGG | + | chr1_3:17167842-17167861 | None:intergenic | 25.0% |
| ! | TAAAACCTAGTAGTTTCTTT+GGG | + | chr1_3:17167889-17167908 | None:intergenic | 25.0% |
| ! | TTAAAACCTAGTAGTTTCTT+TGG | + | chr1_3:17167890-17167909 | None:intergenic | 25.0% |
| ! | TGAAAAAGGTTATAAGAAAG+GGG | - | chr1_3:17167958-17167977 | Msa0107170:intron | 25.0% |
| ! | TTTATGTAATTAATCCTACC+GGG | + | chr1_3:17168241-17168260 | None:intergenic | 25.0% |
| ! | ATATTGTGGAGTTAAAAATG+GGG | - | chr1_3:17168375-17168394 | Msa0107170:intron | 25.0% |
| !! | TCTTTAGGTTAATTGATGAA+AGG | - | chr1_3:17168513-17168532 | Msa0107170:intron | 25.0% |
| ! | AAATATCCAGCACTTAAAAA+GGG | + | chr1_3:17168607-17168626 | None:intergenic | 25.0% |
| ! | TAAATATCCAGCACTTAAAA+AGG | + | chr1_3:17168608-17168627 | None:intergenic | 25.0% |
| ! | AGAATGACATGATTAAGAAA+TGG | - | chr1_3:17168795-17168814 | Msa0107170:intron | 25.0% |
| !!! | TTTATAGTGATTTGTTCATG+TGG | - | chr1_3:17169048-17169067 | Msa0107170:intron | 25.0% |
| !!! | TAGAGAAGGTTTCTTTTTTT+AGG | - | chr1_3:17169672-17169691 | Msa0107170:intron | 25.0% |
| ! | GCAAGGAGTAAAATAAAAAA+GGG | + | chr1_3:17169736-17169755 | None:intergenic | 25.0% |
| ! | TGCAAGGAGTAAAATAAAAA+AGG | + | chr1_3:17169737-17169756 | None:intergenic | 25.0% |
| !! | TGTATTCTAGTTGGATAATT+TGG | + | chr1_3:17169825-17169844 | None:intergenic | 25.0% |
| ! | AAAGGTAAAACTTGAGATAT+GGG | + | chr1_3:17169901-17169920 | None:intergenic | 25.0% |
| ! | GATTCCATATTATTGAAACT+TGG | - | chr1_3:17169973-17169992 | Msa0107170:intron | 25.0% |
| ! | ATAGCCAAGTTTCAATAATA+TGG | + | chr1_3:17169980-17169999 | None:intergenic | 25.0% |
| !!! | AAAAGAGCACGATTTTATTA+TGG | - | chr1_3:17170309-17170328 | Msa0107170:intron | 25.0% |
| ! | ATAAAAAAAAACATAGCCTG+TGG | + | chr1_3:17170421-17170440 | None:intergenic | 25.0% |
| ! | GACTACACTATTATTAAGAA+TGG | - | chr1_3:17170451-17170470 | Msa0107170:intron | 25.0% |
| ! | TACTTCAGGGTTAAAATATT+TGG | + | chr1_3:17171298-17171317 | None:intergenic | 25.0% |
| ! | TTTGCAAAGTCTCTTAAATA+TGG | + | chr1_3:17171355-17171374 | None:intergenic | 25.0% |
| ! | GTGTTCAACAAGAAATAATT+TGG | + | chr1_3:17171421-17171440 | None:intergenic | 25.0% |
| ! | TAGCGATCAAAATTGTATAT+TGG | + | chr1_3:17171625-17171644 | None:intergenic | 25.0% |
| ! | AAGAGACTATATTCATCATT+CGG | + | chr1_3:17171934-17171953 | None:intergenic | 25.0% |
| ! | ATGAAGCAAATTGTTTATGT+TGG | - | chr1_3:17172185-17172204 | Msa0107170:intron | 25.0% |
| ! | ATTTCTCTTGAAAAGTAACT+TGG | + | chr1_3:17172299-17172318 | None:intergenic | 25.0% |
| ! | AAAGCATGTTCTATTAGTAA+TGG | + | chr1_3:17172348-17172367 | None:intergenic | 25.0% |
| ! | TATACTCCATGTTTCATAAA+TGG | + | chr1_3:17172424-17172443 | None:intergenic | 25.0% |
| ! | TTTATGAAACATGGAGTATA+TGG | - | chr1_3:17172424-17172443 | Msa0107170:intron | 25.0% |
| ! | TTTGTAATATGTGTGACATA+TGG | + | chr1_3:17172457-17172476 | None:intergenic | 25.0% |
| !!! | TGGTCATTGTTAATTTGTTA+TGG | + | chr1_3:17172510-17172529 | None:intergenic | 25.0% |
| !!! | ATAATGAAATGGCTATTTCT+TGG | - | chr1_3:17172903-17172922 | Msa0107170:intron | 25.0% |
| TATGCAGAGAAATATTGGAA+AGG | - | chr1_3:17166710-17166729 | Msa0107170:CDS | 30.0% | |
| !!! | ATTTTTTGTTCAACACCGTT+TGG | + | chr1_3:17166764-17166783 | None:intergenic | 30.0% |
| TTTGCAAAGCCTTTCAAATA+TGG | - | chr1_3:17166836-17166855 | Msa0107170:intron | 30.0% | |
| !! | CATTGGTGGATCATATTTTA+AGG | - | chr1_3:17166880-17166899 | Msa0107170:intron | 30.0% |
| !! | AATATCAAAGCAGTTGATGA+AGG | - | chr1_3:17166944-17166963 | Msa0107170:intron | 30.0% |
| AAAGCTCAAAGGACAATAAA+TGG | - | chr1_3:17167064-17167083 | Msa0107170:intron | 30.0% | |
| GAAAAAATCACAACAAACCA+TGG | + | chr1_3:17167178-17167197 | None:intergenic | 30.0% | |
| TCTGAAAGCTTGTAAATCTA+AGG | - | chr1_3:17167198-17167217 | Msa0107170:intron | 30.0% | |
| ! | AGTGTCTTGAAAATCGTTTT+TGG | - | chr1_3:17167230-17167249 | Msa0107170:intron | 30.0% |
| TTAATGGAACTGCAACAATA+AGG | - | chr1_3:17167669-17167688 | Msa0107170:intron | 30.0% | |
| TAATGGAACTGCAACAATAA+GGG | - | chr1_3:17167670-17167689 | Msa0107170:intron | 30.0% | |
| ! | GTAAATTTGAGATGATTCGA+CGG | - | chr1_3:17167813-17167832 | Msa0107170:intron | 30.0% |
| CTAAAAAAGAAACTGAATCC+TGG | + | chr1_3:17168019-17168038 | None:intergenic | 30.0% | |
| GATGAAACATAACACATTCA+AGG | - | chr1_3:17168196-17168215 | Msa0107170:intron | 30.0% | |
| ! | ACATAACACATTCAAGGTTT+TGG | - | chr1_3:17168202-17168221 | Msa0107170:intron | 30.0% |
| TTATGTAATTAATCCTACCG+GGG | + | chr1_3:17168240-17168259 | None:intergenic | 30.0% | |
| ! | CCTCTTTTCATAAATTCCTT+TGG | + | chr1_3:17168343-17168362 | None:intergenic | 30.0% |
| CCAAAGGAATTTATGAAAAG+AGG | - | chr1_3:17168340-17168359 | Msa0107170:intron | 30.0% | |
| GGATGTCATGAAAAATATTG+TGG | - | chr1_3:17168361-17168380 | Msa0107170:intron | 30.0% | |
| !! | AACTATTATGAGAGTATTCG+TGG | - | chr1_3:17168422-17168441 | Msa0107170:intron | 30.0% |
| ATTCATGAAAGAATGCAATG+TGG | - | chr1_3:17168472-17168491 | Msa0107170:intron | 30.0% | |
| !!! | GGTTGCTTGTAATGTTTTTT+TGG | - | chr1_3:17168729-17168748 | Msa0107170:intron | 30.0% |
| CTGAGAATGTTCTGTTAAAT+AGG | - | chr1_3:17168864-17168883 | Msa0107170:intron | 30.0% | |
| GAGAATGTTCTGTTAAGAAA+TGG | - | chr1_3:17168927-17168946 | Msa0107170:intron | 30.0% | |
| ! | TAGTTCGATCAATAACTTGT+TGG | - | chr1_3:17169088-17169107 | Msa0107170:intron | 30.0% |
| AAATTTCACGTTCGAATTCA+CGG | + | chr1_3:17169156-17169175 | None:intergenic | 30.0% | |
| !!! | TTTATTTTGCAACACTTGGT+TGG | - | chr1_3:17169176-17169195 | Msa0107170:intron | 30.0% |
| ATCAAGATTGCTATAGAATC+TGG | - | chr1_3:17169310-17169329 | Msa0107170:intron | 30.0% | |
| AGTCGATACAAAATAACACT+AGG | + | chr1_3:17169363-17169382 | None:intergenic | 30.0% | |
| TGAATCCATAATCGATATTC+TGG | - | chr1_3:17169385-17169404 | Msa0107170:intron | 30.0% | |
| CAAAGGAGGATCATATTTAA+AGG | + | chr1_3:17169499-17169518 | None:intergenic | 30.0% | |
| TATCGAGATTATTACAAAGG+AGG | + | chr1_3:17169513-17169532 | None:intergenic | 30.0% | |
| CATTGAAGATATGGTTGAAT+TGG | + | chr1_3:17169790-17169809 | None:intergenic | 30.0% | |
| ACCATATCTTCAATGAAAGA+AGG | - | chr1_3:17169795-17169814 | Msa0107170:intron | 30.0% | |
| AAAAGTAAAACGTGTGACTT+TGG | - | chr1_3:17169845-17169864 | Msa0107170:intron | 30.0% | |
| GAAAGGTAAAACTTGAGATA+TGG | + | chr1_3:17169902-17169921 | None:intergenic | 30.0% | |
| ! | CTTTATGATTTTTCGCTGAA+AGG | + | chr1_3:17169919-17169938 | None:intergenic | 30.0% |
| TTTCTACTCTCATGTTAATG+TGG | - | chr1_3:17170004-17170023 | Msa0107170:intron | 30.0% | |
| ! | GAAGGTTAATTTTCTACCAT+TGG | - | chr1_3:17170281-17170300 | Msa0107170:intron | 30.0% |
| ATTACCCTTCTAATCAAAAC+AGG | - | chr1_3:17170559-17170578 | Msa0107170:intron | 30.0% | |
| ! | AAGGAGAAATTTGAAGCATA+TGG | - | chr1_3:17170703-17170722 | Msa0107170:intron | 30.0% |
| TATCTTCAACATGATTGCTT+AGG | - | chr1_3:17171167-17171186 | Msa0107170:CDS | 30.0% | |
| TCAACAAGAAATAATTTGGG+TGG | + | chr1_3:17171417-17171436 | None:intergenic | 30.0% | |
| ! | TATGTGGAGAGATTTTTGAA+AGG | + | chr1_3:17171479-17171498 | None:intergenic | 30.0% |
| AATCTCTCCACATATTTCTT+TGG | - | chr1_3:17171485-17171504 | Msa0107170:intron | 30.0% | |
| !!! | GACATGTATTTTGAAACTGA+AGG | + | chr1_3:17171580-17171599 | None:intergenic | 30.0% |
| GTATATTGGCATATGTGAAA+TGG | + | chr1_3:17171611-17171630 | None:intergenic | 30.0% | |
| AGAGACTATATTCATCATTC+GGG | + | chr1_3:17171933-17171952 | None:intergenic | 30.0% | |
| !!! | AGTCTCTTTTTTTCTTCTTC+AGG | - | chr1_3:17171946-17171965 | Msa0107170:intron | 30.0% |
| TGAGAGATAGGAACATAAAA+GGG | + | chr1_3:17172069-17172088 | None:intergenic | 30.0% | |
| TTCAAGAGAAATGAGTTTGA+AGG | - | chr1_3:17172307-17172326 | Msa0107170:intron | 30.0% | |
| ACTAGACCATTTATGAAACA+TGG | - | chr1_3:17172415-17172434 | Msa0107170:intron | 30.0% | |
| ! | GATGTATATTTGTTGAGAAC+AGG | - | chr1_3:17172539-17172558 | Msa0107170:CDS | 30.0% |
| TGTACTCTGTTGTAAATCTA+AGG | - | chr1_3:17172597-17172616 | Msa0107170:CDS | 30.0% | |
| ! | TAAACCATGATTTGAAACAG+TGG | - | chr1_3:17172980-17172999 | Msa0107170:CDS | 30.0% |
| TCTGAATTTCTTTGTTGCAG+AGG | - | chr1_3:17166675-17166694 | Msa0107170:CDS | 35.0% | |
| CTGAATTTCTTTGTTGCAGA+GGG | - | chr1_3:17166676-17166695 | Msa0107170:CDS | 35.0% | |
| CAACACCGTTTGGAAATTTA+AGG | + | chr1_3:17166754-17166773 | None:intergenic | 35.0% | |
| !! | ATATTTTGGGTGGAGAGTAA+TGG | - | chr1_3:17166782-17166801 | Msa0107170:intron | 35.0% |
| TGGAGAGTAATGGTGATATT+TGG | - | chr1_3:17166792-17166811 | Msa0107170:intron | 35.0% | |
| ACTTTCTTTACCTTCTTCAG+TGG | + | chr1_3:17166978-17166997 | None:intergenic | 35.0% | |
| AGAAGGTAAAGAAAGTGATG+AGG | - | chr1_3:17166982-17167001 | Msa0107170:intron | 35.0% | |
| AAGTGATGAAGAGAGTGATA+AGG | - | chr1_3:17167027-17167046 | Msa0107170:intron | 35.0% | |
| AAATGCCAAAGAAAGCTCAA+AGG | - | chr1_3:17167053-17167072 | Msa0107170:intron | 35.0% | |
| ATTGTCCTTTGAGCTTTCTT+TGG | + | chr1_3:17167061-17167080 | None:intergenic | 35.0% | |
| AATGGCAAGAGAAAATTCTC+AGG | - | chr1_3:17167082-17167101 | Msa0107170:intron | 35.0% | |
| GAAAATTCTCAGGTGAGTTT+AGG | - | chr1_3:17167092-17167111 | Msa0107170:intron | 35.0% | |
| CTTTACAGGTTGTAACAAAG+TGG | - | chr1_3:17167428-17167447 | Msa0107170:intron | 35.0% | |
| CATTAACAGCTTCAGATGTT+TGG | + | chr1_3:17167479-17167498 | None:intergenic | 35.0% | |
| ATGACACAATCTTACACCAA+TGG | - | chr1_3:17167522-17167541 | Msa0107170:intron | 35.0% | |
| !! | TTACACCAATGGCTATTTCT+TGG | - | chr1_3:17167533-17167552 | Msa0107170:intron | 35.0% |
| ACTTACCAAGAAATAGCCAT+TGG | + | chr1_3:17167541-17167560 | None:intergenic | 35.0% | |
| TGTTCTCTTGAAAACTCACA+TGG | + | chr1_3:17167638-17167657 | None:intergenic | 35.0% | |
| !! | CAATAAGGGTTGGTAATGAA+AGG | - | chr1_3:17167684-17167703 | Msa0107170:intron | 35.0% |
| !! | GAGGTTAGTTTGAGGTATTA+TGG | - | chr1_3:17167713-17167732 | Msa0107170:intron | 35.0% |
| ! | AAAGAAAGATCTTGTTTGGG+TGG | - | chr1_3:17167740-17167759 | Msa0107170:intron | 35.0% |
| TGGTGGTTGGAAAATATTCA+GGG | - | chr1_3:17167760-17167779 | Msa0107170:intron | 35.0% | |
| AACTGAATCCTGGATAACTT+AGG | + | chr1_3:17168009-17168028 | None:intergenic | 35.0% | |
| GTTTATGCCTATTGTACAGA+AGG | - | chr1_3:17168164-17168183 | Msa0107170:intron | 35.0% | |
| GTGTTATGTTTCATCACATC+AGG | + | chr1_3:17168191-17168210 | None:intergenic | 35.0% | |
| TAAAAATGGGGAGAAAGTCA+TGG | - | chr1_3:17168387-17168406 | Msa0107170:intron | 35.0% | |
| AAAGAATGCAATGTGGAGAT+TGG | - | chr1_3:17168479-17168498 | Msa0107170:intron | 35.0% | |
| TTGGAGATACTTGTCTCTTT+AGG | - | chr1_3:17168498-17168517 | Msa0107170:intron | 35.0% | |
| CAATTAGCTGTGCTTCTTTA+AGG | - | chr1_3:17168555-17168574 | Msa0107170:intron | 35.0% | |
| ATCGCTTATGGAAATTCCAA+AGG | + | chr1_3:17169292-17169311 | None:intergenic | 35.0% | |
| ATAGCAATCTTGATCGCTTA+TGG | + | chr1_3:17169304-17169323 | None:intergenic | 35.0% | |
| TATTCTGGTCGTGAAATAAG+AGG | - | chr1_3:17169400-17169419 | Msa0107170:intron | 35.0% | |
| GATATTAGGGCTCAATACAT+TGG | + | chr1_3:17169472-17169491 | None:intergenic | 35.0% | |
| !! | ATCTTTAACTTGTGCCTTGA+GGG | + | chr1_3:17169572-17169591 | None:intergenic | 35.0% |
| !! | AATCTTTAACTTGTGCCTTG+AGG | + | chr1_3:17169573-17169592 | None:intergenic | 35.0% |
| TTTCTTAACATGTGCCCTAA+GGG | - | chr1_3:17169695-17169714 | Msa0107170:intron | 35.0% | |
| GGAACTATATGTGCTTGATT+TGG | + | chr1_3:17169769-17169788 | None:intergenic | 35.0% | |
| GCCTTCTTTCATTGAAGATA+TGG | + | chr1_3:17169799-17169818 | None:intergenic | 35.0% | |
| TGCTGCAAGAATTGAATGTT+GGG | + | chr1_3:17169878-17169897 | None:intergenic | 35.0% | |
| GACACAAGTGTTTCCAATTT+CGG | - | chr1_3:17170207-17170226 | Msa0107170:intron | 35.0% | |
| ATACTAAATGCCACCGAAAT+TGG | + | chr1_3:17170223-17170242 | None:intergenic | 35.0% | |
| ! | TGTGCACAATACACAAGTTT+TGG | - | chr1_3:17170259-17170278 | Msa0107170:intron | 35.0% |
| !!! | CACAATACACAAGTTTTGGA+AGG | - | chr1_3:17170263-17170282 | Msa0107170:intron | 35.0% |
| AAACATAGCCTGTGGTTTAA+TGG | + | chr1_3:17170413-17170432 | None:intergenic | 35.0% | |
| !!! | CTGTCCTGTTTTGATTAGAA+GGG | + | chr1_3:17170566-17170585 | None:intergenic | 35.0% |
| !!! | ACTGTCCTGTTTTGATTAGA+AGG | + | chr1_3:17170567-17170586 | None:intergenic | 35.0% |
| ACAAAGCAACTAGAAAACCA+TGG | - | chr1_3:17170818-17170837 | Msa0107170:intron | 35.0% | |
| CAAAGCAACTAGAAAACCAT+GGG | - | chr1_3:17170819-17170838 | Msa0107170:intron | 35.0% | |
| CAACTCTATCGATGAAATCT+TGG | - | chr1_3:17170847-17170866 | Msa0107170:intron | 35.0% | |
| ! | AGATGATGATGAGTAACAAG+AGG | - | chr1_3:17170977-17170996 | Msa0107170:intron | 35.0% |
| GTAACAAGAGGAAGATAAAG+AGG | - | chr1_3:17170989-17171008 | Msa0107170:intron | 35.0% | |
| GAAGATAAAGAGGAACAGAA+AGG | - | chr1_3:17170999-17171018 | Msa0107170:intron | 35.0% | |
| ! | ACTTGCACCTTAGTGTTTTT+AGG | - | chr1_3:17171063-17171082 | Msa0107170:intron | 35.0% |
| TGGAGAGTAATGGTGATATT+TGG | + | chr1_3:17166792-17166811 | None:intergenic | 35.0% | |
| ATAATTTGGGTGGAGAGTAA+TGG | + | chr1_3:17171407-17171426 | None:intergenic | 35.0% | |
| ATATTCCTTAGACTGGCAAA+TGG | + | chr1_3:17171443-17171462 | None:intergenic | 35.0% | |
| TTTGCCAGTCTAAGGAATAT+TGG | - | chr1_3:17171443-17171462 | Msa0107170:intron | 35.0% | |
| TTGCCAGTCTAAGGAATATT+GGG | - | chr1_3:17171444-17171463 | Msa0107170:intron | 35.0% | |
| AAACCCAATATTCCTTAGAC+TGG | + | chr1_3:17171450-17171469 | None:intergenic | 35.0% | |
| GACGATTCCAAAGAAATATG+TGG | + | chr1_3:17171495-17171514 | None:intergenic | 35.0% | |
| AAAAAAGCCTCCATTAGCTA+AGG | - | chr1_3:17171906-17171925 | Msa0107170:intron | 35.0% | |
| !!! | CTCTTTTTTTCTTCTTCAGG+AGG | - | chr1_3:17171949-17171968 | Msa0107170:intron | 35.0% |
| GTGAGAGATAGGAACATAAA+AGG | + | chr1_3:17172070-17172089 | None:intergenic | 35.0% | |
| TTATGTTCCTATCTCTCACA+TGG | - | chr1_3:17172071-17172090 | Msa0107170:CDS | 35.0% | |
| CTTTACAGGTAGTAACAAAG+TGG | - | chr1_3:17172806-17172825 | Msa0107170:CDS | 35.0% | |
| GTAACCACTGTTTCAAATCA+TGG | + | chr1_3:17172987-17173006 | None:intergenic | 35.0% | |
| ACTTTCTTCACCTTCTTCAG+TGG | + | chr1_3:17167011-17167030 | None:intergenic | 40.0% | |
| !! | TTTTCTAGCCTTCTTCACCA+TGG | + | chr1_3:17167454-17167473 | None:intergenic | 40.0% |
| GTGGTGGTTGGAAAATATTC+AGG | - | chr1_3:17167759-17167778 | Msa0107170:intron | 40.0% | |
| ATTGTCACAATTACTCGTGC+CGG | - | chr1_3:17167851-17167870 | Msa0107170:intron | 40.0% | |
| GCAATCCCAAAGAAACTACT+AGG | - | chr1_3:17167881-17167900 | Msa0107170:intron | 40.0% | |
| GTTAGTAGCCTAAGTTATCC+AGG | - | chr1_3:17167998-17168017 | Msa0107170:intron | 40.0% | |
| ATCAGGACCTTCTGTACAAT+AGG | + | chr1_3:17168174-17168193 | None:intergenic | 40.0% | |
| GTATTTGCAGAGTGTACCAA+AGG | - | chr1_3:17168324-17168343 | Msa0107170:intron | 40.0% | |
| GAGAAAGTCATGGTTCGTAA+AGG | - | chr1_3:17168397-17168416 | Msa0107170:intron | 40.0% | |
| TTGAAGCAGTGACGTTGAAT+TGG | - | chr1_3:17168819-17168838 | Msa0107170:intron | 40.0% | |
| TGAAGCAGTGACGTTGAATT+GGG | - | chr1_3:17168820-17168839 | Msa0107170:intron | 40.0% | |
| ACAAAGCAGTGACGTTGAAT+TGG | - | chr1_3:17168887-17168906 | Msa0107170:intron | 40.0% | |
| CAAAGCAGTGACGTTGAATT+GGG | - | chr1_3:17168888-17168907 | Msa0107170:intron | 40.0% | |
| AAAGCAGTGACGTTGAATTG+GGG | - | chr1_3:17168889-17168908 | Msa0107170:intron | 40.0% | |
| TTGAAGCAGTGACGTTGAAT+TGG | - | chr1_3:17168819-17168838 | Msa0107170:intron | 40.0% | |
| TGAAGCAGTGACGTTGAATT+GGG | - | chr1_3:17168820-17168839 | Msa0107170:intron | 40.0% | |
| AAAGGTGAATTCTAGCCACT+AGG | - | chr1_3:17168994-17169013 | Msa0107170:intron | 40.0% | |
| !! | TTTTTGGTCAGATAGCCTAG+TGG | + | chr1_3:17169012-17169031 | None:intergenic | 40.0% |
| !! | TAACTTGTTGGCTCGATAGT+TGG | - | chr1_3:17169100-17169119 | Msa0107170:intron | 40.0% |
| !!! | TTTTTGGGAGGTGTTTTGCT+AGG | - | chr1_3:17169248-17169267 | Msa0107170:intron | 40.0% |
| !!! | TTTTGGGAGGTGTTTTGCTA+GGG | - | chr1_3:17169249-17169268 | Msa0107170:intron | 40.0% |
| ! | TATGAGTGTTGTCGTTCCTT+TGG | - | chr1_3:17169273-17169292 | Msa0107170:intron | 40.0% |
| ! | CACGACCAGAATATCGATTA+TGG | + | chr1_3:17169393-17169412 | None:intergenic | 40.0% |
| !! | AATGTTAACTTGTGCCCTCA+AGG | - | chr1_3:17169555-17169574 | Msa0107170:intron | 40.0% |
| GTTTCTTAACATGTGCCCTA+AGG | - | chr1_3:17169694-17169713 | Msa0107170:intron | 40.0% | |
| !! | AGTGTTAACTTGTGCCCTTA+GGG | + | chr1_3:17169712-17169731 | None:intergenic | 40.0% |
| !! | TAGTGTTAACTTGTGCCCTT+AGG | + | chr1_3:17169713-17169732 | None:intergenic | 40.0% |
| ! | GATTTGGTTTCAGTGTTGCA+AGG | + | chr1_3:17169753-17169772 | None:intergenic | 40.0% |
| GTGCTGCAAGAATTGAATGT+TGG | + | chr1_3:17169879-17169898 | None:intergenic | 40.0% | |
| ACAAGTGTTTCCAATTTCGG+TGG | - | chr1_3:17170210-17170229 | Msa0107170:intron | 40.0% | |
| !!! | CGTGCTCTTTTTTGATCCAA+TGG | + | chr1_3:17170300-17170319 | None:intergenic | 40.0% |
| GGGTCGTGTAACAAAAACAA+AGG | - | chr1_3:17170472-17170491 | Msa0107170:intron | 40.0% | |
| !! | AGTGGAGTGTTGCTTTAAAC+AGG | + | chr1_3:17170611-17170630 | None:intergenic | 40.0% |
| CTTGTACAAAACCATGGGTA+TGG | + | chr1_3:17170635-17170654 | None:intergenic | 40.0% | |
| !!! | CATACCCATGGTTTTGTACA+AGG | - | chr1_3:17170633-17170652 | Msa0107170:intron | 40.0% |
| CACACCTTGTACAAAACCAT+GGG | + | chr1_3:17170640-17170659 | None:intergenic | 40.0% | |
| ATCAGGTTTGAGAGAGAGAT+GGG | + | chr1_3:17170745-17170764 | None:intergenic | 40.0% | |
| AATCAGGTTTGAGAGAGAGA+TGG | + | chr1_3:17170746-17170765 | None:intergenic | 40.0% | |
| GATATGGAGCAGACAAAATC+AGG | + | chr1_3:17170762-17170781 | None:intergenic | 40.0% | |
| CGATAGAGTTGAAAAACCCA+TGG | + | chr1_3:17170838-17170857 | None:intergenic | 40.0% | |
| !!! | TGCACCTTAGTGTTTTTAGG+TGG | - | chr1_3:17171066-17171085 | Msa0107170:intron | 40.0% |
| !!! | GCACCTTAGTGTTTTTAGGT+GGG | - | chr1_3:17171067-17171086 | Msa0107170:intron | 40.0% |
| CATAGGTGGATCATACTTCA+GGG | + | chr1_3:17171311-17171330 | None:intergenic | 40.0% | |
| ACATAGGTGGATCATACTTC+AGG | + | chr1_3:17171312-17171331 | None:intergenic | 40.0% | |
| TTCTTCAGGAGGTAACAAAG+CGG | - | chr1_3:17171960-17171979 | Msa0107170:intron | 40.0% | |
| AGAGAAACCATGTGAGAGAT+AGG | + | chr1_3:17172081-17172100 | None:intergenic | 40.0% | |
| AGGTAGTAACAAAGTGGCTA+TGG | - | chr1_3:17172812-17172831 | Msa0107170:CDS | 40.0% | |
| GAAGGCTAGAAAATACCCAA+TGG | - | chr1_3:17172839-17172858 | Msa0107170:intron | 40.0% | |
| AGGTTGTAACAAAGTGGCCA+TGG | - | chr1_3:17167434-17167453 | Msa0107170:intron | 45.0% | |
| GGAACTGCAACAATAAGGGT+TGG | - | chr1_3:17167674-17167693 | Msa0107170:intron | 45.0% | |
| !! | GGTTGGTAATGAAAGGAGTG+TGG | - | chr1_3:17167691-17167710 | Msa0107170:intron | 45.0% |
| ! | TGGTAATGAAAGGAGTGTGG+AGG | - | chr1_3:17167694-17167713 | Msa0107170:intron | 45.0% |
| ! | GAAAGATCTTGTTTGGGTGG+TGG | - | chr1_3:17167743-17167762 | Msa0107170:intron | 45.0% |
| !! | CTTTGGGATTGCTTCGTTTC+CGG | + | chr1_3:17167873-17167892 | None:intergenic | 45.0% |
| !! | ATGAGAGTATTCGTGGCTGT+AGG | - | chr1_3:17168429-17168448 | Msa0107170:intron | 45.0% |
| AGTATTCGTGGCTGTAGGTT+CGG | - | chr1_3:17168434-17168453 | Msa0107170:intron | 45.0% | |
| ! | GCTGTAGGTTCGGTAAAGAT+TGG | - | chr1_3:17168444-17168463 | Msa0107170:intron | 45.0% |
| !!! | GCTTTGCCCTTTTTAAGTGC+TGG | - | chr1_3:17168598-17168617 | Msa0107170:intron | 45.0% |
| AGTTGTATCGTGTCTGCCTT+TGG | - | chr1_3:17168689-17168708 | Msa0107170:intron | 45.0% | |
| GAAGCAGTGACGTTGAATTG+GGG | - | chr1_3:17168821-17168840 | Msa0107170:intron | 45.0% | |
| GAAGCAGTGACGTTGAATTG+GGG | - | chr1_3:17168821-17168840 | Msa0107170:intron | 45.0% | |
| GTGTGTCTCACTCTCATCAA+TGG | + | chr1_3:17170043-17170062 | None:intergenic | 45.0% | |
| TTGATGAGAGTGAGACACAC+TGG | - | chr1_3:17170043-17170062 | Msa0107170:intron | 45.0% | |
| GACACACTGGAAAGACACAT+CGG | - | chr1_3:17170056-17170075 | Msa0107170:intron | 45.0% | |
| CATAGCCTGTGGTTTAATGG+TGG | + | chr1_3:17170410-17170429 | None:intergenic | 45.0% | |
| !! | GGAGTGTTGCTTTAAACAGG+TGG | + | chr1_3:17170608-17170627 | None:intergenic | 45.0% |
| GCACACCTTGTACAAAACCA+TGG | + | chr1_3:17170641-17170660 | None:intergenic | 45.0% | |
| TTAACCAAGTAGCTGCTGCA+AGG | - | chr1_3:17170684-17170703 | Msa0107170:intron | 45.0% | |
| AGAGAGATGGGAAGGAGAAA+GGG | + | chr1_3:17170733-17170752 | None:intergenic | 45.0% | |
| GCACCCACCTAAAAACACTA+AGG | + | chr1_3:17171073-17171092 | None:intergenic | 45.0% | |
| GAACACCATTTGCCAGTCTA+AGG | - | chr1_3:17171435-17171454 | Msa0107170:intron | 45.0% | |
| TCATTCGGGTCCTTAGCTAA+TGG | + | chr1_3:17171919-17171938 | None:intergenic | 45.0% | |
| TGCAGATGATCCATTTCCGT+GGG | + | chr1_3:17172019-17172038 | None:intergenic | 45.0% | |
| TTGCAGATGATCCATTTCCG+TGG | + | chr1_3:17172020-17172039 | None:intergenic | 45.0% | |
| TGTGAGTTGTGACCAATGCA+TGG | - | chr1_3:17172367-17172386 | Msa0107170:intron | 45.0% | |
| AGTTGTGACCAATGCATGGT+TGG | - | chr1_3:17172371-17172390 | Msa0107170:intron | 45.0% | |
| ACCAATGCATGGTTGGAACT+TGG | - | chr1_3:17172378-17172397 | Msa0107170:intron | 45.0% | |
| TCCAAGTTCCAACCATGCAT+TGG | + | chr1_3:17172382-17172401 | None:intergenic | 45.0% | |
| CAAAGTGGCTATGGTGAAGA+AGG | - | chr1_3:17172821-17172840 | Msa0107170:CDS | 45.0% | |
| ! | CAGCTTCAGAATGTGCCATT+GGG | + | chr1_3:17172857-17172876 | None:intergenic | 45.0% |
| ACAGCTTCAGAATGTGCCAT+TGG | + | chr1_3:17172858-17172877 | None:intergenic | 45.0% | |
| !!! | ATAAAAATATGTTTTTTTTA+TGG | - | chr1_3:17167276-17167295 | Msa0107170:intron | 5.0% |
| !!! | TTATAATTTTTTTATGAAAA+AGG | - | chr1_3:17167944-17167963 | Msa0107170:intron | 5.0% |
| !!! | AAAACTTTTTTTTATTTTTT+TGG | + | chr1_3:17169028-17169047 | None:intergenic | 5.0% |
| !!! | ATTTATATTTTCAATATTTT+TGG | - | chr1_3:17169232-17169251 | Msa0107170:intron | 5.0% |
| !!! | TTTATATTTTCAATATTTTT+GGG | - | chr1_3:17169233-17169252 | Msa0107170:intron | 5.0% |
| !!! | ATTATTTTTTTTGTTAAAAT+TGG | + | chr1_3:17172239-17172258 | None:intergenic | 5.0% |
| GATGAGGAAGCCACTGAAGA+AGG | - | chr1_3:17166998-17167017 | Msa0107170:intron | 50.0% | |
| CAAAGTGGCCATGGTGAAGA+AGG | - | chr1_3:17167443-17167462 | Msa0107170:intron | 50.0% | |
| !! | GGAGTGTGGAGGTTAGTTTG+AGG | - | chr1_3:17167705-17167724 | Msa0107170:intron | 50.0% |
| ! | GATCTTGTTTGGGTGGTGGT+TGG | - | chr1_3:17167747-17167766 | Msa0107170:intron | 50.0% |
| TTTGGTGAAGAACACAGCCC+CGG | - | chr1_3:17168220-17168239 | Msa0107170:intron | 50.0% | |
| AGCCTGTGGTTTAATGGTGG+CGG | + | chr1_3:17170407-17170426 | None:intergenic | 50.0% | |
| CAAAACCATGGGTATGGCAG+TGG | + | chr1_3:17170629-17170648 | None:intergenic | 50.0% | |
| TTCTCCTTGCAGCAGCTACT+TGG | + | chr1_3:17170691-17170710 | None:intergenic | 50.0% | |
| GAGAGAGATGGGAAGGAGAA+AGG | + | chr1_3:17170734-17170753 | None:intergenic | 50.0% | |
| GGTTTGAGAGAGAGATGGGA+AGG | + | chr1_3:17170741-17170760 | None:intergenic | 50.0% | |
| TTCGGGTCCTTAGCTAATGG+AGG | + | chr1_3:17171916-17171935 | None:intergenic | 50.0% | |
| TAACAAAGCGGCATGGTGAG+AGG | - | chr1_3:17171972-17171991 | Msa0107170:intron | 50.0% | |
| ACGAGAAGTCGAGAATCCCA+CGG | - | chr1_3:17172000-17172019 | Msa0107170:CDS | 50.0% | |
| AGTCGAGAATCCCACGGAAA+TGG | - | chr1_3:17172006-17172025 | Msa0107170:CDS | 50.0% | |
| AAAAGGGCAGCATAGAGTGC+AGG | + | chr1_3:17172053-17172072 | None:intergenic | 50.0% | |
| GAGATATGGATTCCCTGCAG+CGG | + | chr1_3:17172141-17172160 | None:intergenic | 50.0% | |
| ! | GGTGCTGAAGCCACTGAAGA+AGG | - | chr1_3:17166965-17166984 | Msa0107170:intron | 55.0% |
| ACCCGCCACCATTAAACCAC+AGG | - | chr1_3:17170402-17170421 | Msa0107170:intron | 55.0% | |
| GCCTGTGGTTTAATGGTGGC+GGG | + | chr1_3:17170406-17170425 | None:intergenic | 55.0% | |
| ACACTCCACTGCCATACCCA+TGG | - | chr1_3:17170621-17170640 | Msa0107170:intron | 55.0% | |
| GCGCTTCATCTGTCAGATCC+AGG | - | chr1_3:17170659-17170678 | Msa0107170:intron | 55.0% | |
| GCAGCTACTTGGTTAACGCC+TGG | + | chr1_3:17170680-17170699 | None:intergenic | 55.0% | |
| GAGATGGGAAGGAGAAAGGG+TGG | + | chr1_3:17170730-17170749 | None:intergenic | 55.0% | |
| CAGGAGGTAACAAAGCGGCA+TGG | - | chr1_3:17171965-17171984 | Msa0107170:intron | 55.0% | |
| GTGAAGAACACAGCCCCGGT+AGG | - | chr1_3:17168224-17168243 | Msa0107170:intron | 60.0% | |
| CCAGGAGGGGGAAGATTGCA+AGG | + | chr1_3:17170372-17170391 | None:intergenic | 60.0% | |
| CCTTGCAATCTTCCCCCTCC+TGG | - | chr1_3:17170369-17170388 | Msa0107170:intron | 60.0% | |
| GTCTACTGCAGTCCAGGAGG+GGG | + | chr1_3:17170384-17170403 | None:intergenic | 60.0% | |
| GGTCTACTGCAGTCCAGGAG+GGG | + | chr1_3:17170385-17170404 | None:intergenic | 60.0% | |
| GGGTCTACTGCAGTCCAGGA+GGG | + | chr1_3:17170386-17170405 | None:intergenic | 60.0% | |
| TATGGATTCCCTGCAGCGGC+AGG | + | chr1_3:17172137-17172156 | None:intergenic | 60.0% | |
| CGGGTCTACTGCAGTCCAGG+AGG | + | chr1_3:17170387-17170406 | None:intergenic | 65.0% | |
| ! | TGGCGGGTCTACTGCAGTCC+AGG | + | chr1_3:17170390-17170409 | None:intergenic | 65.0% |
| CAGCACGTCCTGCCGCTGCA+GGG | - | chr1_3:17172126-17172145 | Msa0107170:intron | 70.0% | |
| GCAGCACGTCCTGCCGCTGC+AGG | - | chr1_3:17172125-17172144 | Msa0107170:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 17166536 | 17173013 | 17166536 | ID=Msa0107170;Name=Msa0107170 |
| chr1_3 | mRNA | 17166536 | 17173013 | 17166536 | ID=Msa0107170-mRNA-1;Parent=Msa0107170;Name=Msa0107170-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0.57|0.37|1|1|1|8|0|375 |
| chr1_3 | exon | 17172957 | 17173013 | 17172957 | ID=Msa0107170-mRNA-1:exon:6484;Parent=Msa0107170-mRNA-1 |
| chr1_3 | exon | 17172446 | 17172854 | 17172446 | ID=Msa0107170-mRNA-1:exon:6483;Parent=Msa0107170-mRNA-1 |
| chr1_3 | exon | 17171995 | 17172113 | 17171995 | ID=Msa0107170-mRNA-1:exon:6482;Parent=Msa0107170-mRNA-1 |
| chr1_3 | exon | 17171647 | 17171920 | 17171647 | ID=Msa0107170-mRNA-1:exon:6481;Parent=Msa0107170-mRNA-1 |
| chr1_3 | exon | 17171308 | 17171366 | 17171308 | ID=Msa0107170-mRNA-1:exon:6480;Parent=Msa0107170-mRNA-1 |
| chr1_3 | exon | 17171131 | 17171215 | 17171131 | ID=Msa0107170-mRNA-1:exon:6479;Parent=Msa0107170-mRNA-1 |
| chr1_3 | exon | 17166625 | 17166735 | 17166625 | ID=Msa0107170-mRNA-1:exon:6478;Parent=Msa0107170-mRNA-1 |
| chr1_3 | exon | 17166536 | 17166549 | 17166536 | ID=Msa0107170-mRNA-1:exon:6477;Parent=Msa0107170-mRNA-1 |
| chr1_3 | CDS | 17172957 | 17173013 | 17172957 | ID=Msa0107170-mRNA-1:cds;Parent=Msa0107170-mRNA-1 |
| chr1_3 | CDS | 17172446 | 17172854 | 17172446 | ID=Msa0107170-mRNA-1:cds;Parent=Msa0107170-mRNA-1 |
| chr1_3 | CDS | 17171995 | 17172113 | 17171995 | ID=Msa0107170-mRNA-1:cds;Parent=Msa0107170-mRNA-1 |
| chr1_3 | CDS | 17171647 | 17171920 | 17171647 | ID=Msa0107170-mRNA-1:cds;Parent=Msa0107170-mRNA-1 |
| chr1_3 | CDS | 17171308 | 17171366 | 17171308 | ID=Msa0107170-mRNA-1:cds;Parent=Msa0107170-mRNA-1 |
| chr1_3 | CDS | 17171131 | 17171215 | 17171131 | ID=Msa0107170-mRNA-1:cds;Parent=Msa0107170-mRNA-1 |
| chr1_3 | CDS | 17166625 | 17166735 | 17166625 | ID=Msa0107170-mRNA-1:cds;Parent=Msa0107170-mRNA-1 |
| chr1_3 | CDS | 17166536 | 17166549 | 17166536 | ID=Msa0107170-mRNA-1:cds;Parent=Msa0107170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
