Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107190 | KEH26464.1 | 46.364 | 440 | 137 | 9 | 1 | 343 | 33 | 470 | 1.00e-104 | 331 |
| Msa0107190 | KEH26464.1 | 67.871 | 249 | 71 | 3 | 252 | 493 | 224 | 470 | 9.92e-107 | 336 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107190 | A0A072U9K2 | 46.364 | 440 | 137 | 9 | 1 | 343 | 33 | 470 | 4.80e-105 | 331 |
| Msa0107190 | A0A072U9K2 | 67.871 | 249 | 71 | 3 | 252 | 493 | 224 | 470 | 4.74e-107 | 336 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0107190 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107190 | MtrunA17_Chr6g0476171 | 57.028 | 249 | 60 | 4 | 252 | 493 | 37 | 245 | 1.55e-85 | 263 |
| Msa0107190 | MtrunA17_Chr6g0476171 | 42.279 | 272 | 95 | 7 | 106 | 343 | 2 | 245 | 3.98e-54 | 182 |
| Msa0107190 | MtrunA17_Chr6g0476181 | 55.921 | 152 | 20 | 1 | 1 | 105 | 1 | 152 | 9.50e-46 | 157 |
| Msa0107190 | MtrunA17_Chr1g0162161 | 57.143 | 140 | 25 | 1 | 1 | 105 | 3 | 142 | 5.13e-45 | 155 |
| Msa0107190 | MtrunA17_Chr1g0163131 | 35.507 | 276 | 111 | 6 | 1 | 211 | 33 | 306 | 6.99e-44 | 157 |
| Msa0107190 | MtrunA17_Chr1g0163131 | 45.455 | 88 | 46 | 1 | 406 | 493 | 221 | 306 | 4.32e-16 | 79.0 |
| Msa0107190 | MtrunA17_Chr1g0163101 | 55.797 | 138 | 28 | 2 | 1 | 105 | 32 | 169 | 6.67e-41 | 145 |
| Msa0107190 | MtrunA17_Chr1g0163141 | 90.000 | 70 | 7 | 0 | 1 | 70 | 10 | 79 | 6.08e-40 | 142 |
| Msa0107190 | MtrunA17_Chr1g0163181 | 27.400 | 427 | 207 | 13 | 2 | 343 | 21 | 429 | 2.57e-39 | 147 |
| Msa0107190 | MtrunA17_Chr1g0163181 | 33.457 | 269 | 151 | 11 | 233 | 493 | 181 | 429 | 1.49e-31 | 126 |
| Msa0107190 | MtrunA17_Chr1g0163261 | 35.612 | 278 | 117 | 9 | 2 | 224 | 25 | 295 | 5.03e-36 | 135 |
| Msa0107190 | MtrunA17_Chr1g0163261 | 44.086 | 93 | 42 | 4 | 270 | 355 | 205 | 294 | 1.86e-13 | 71.2 |
| Msa0107190 | MtrunA17_Chr1g0163201 | 26.585 | 410 | 195 | 12 | 2 | 342 | 19 | 391 | 1.98e-35 | 136 |
| Msa0107190 | MtrunA17_Chr1g0163201 | 35.931 | 231 | 96 | 8 | 270 | 493 | 207 | 392 | 3.06e-30 | 122 |
| Msa0107190 | MtrunA17_Chr1g0163111 | 35.600 | 250 | 117 | 10 | 252 | 493 | 15 | 228 | 2.27e-35 | 131 |
| Msa0107190 | MtrunA17_Chr1g0163111 | 27.711 | 249 | 126 | 9 | 130 | 346 | 5 | 231 | 2.02e-18 | 84.3 |
| Msa0107190 | MtrunA17_Chr1g0163121 | 74.667 | 75 | 19 | 0 | 1 | 75 | 10 | 84 | 1.77e-34 | 126 |
| Msa0107190 | MtrunA17_Chr1g0163081 | 52.239 | 134 | 32 | 2 | 1 | 103 | 5 | 137 | 2.36e-34 | 126 |
| Msa0107190 | MtrunA17_Chr1g0163231 | 34.831 | 267 | 102 | 8 | 2 | 210 | 25 | 277 | 5.45e-33 | 127 |
| Msa0107190 | MtrunA17_Chr1g0163231 | 42.105 | 95 | 35 | 2 | 262 | 342 | 189 | 277 | 9.25e-12 | 65.9 |
| Msa0107190 | MtrunA17_Chr1g0163251 | 32.131 | 305 | 155 | 8 | 2 | 256 | 21 | 323 | 8.34e-33 | 129 |
| Msa0107190 | MtrunA17_Chr1g0163251 | 40.000 | 120 | 62 | 4 | 243 | 355 | 175 | 291 | 1.58e-14 | 75.5 |
| Msa0107190 | MtrunA17_Chr1g0163151 | 33.473 | 239 | 107 | 7 | 262 | 493 | 28 | 221 | 9.42e-32 | 121 |
| Msa0107190 | MtrunA17_Chr1g0163161 | 50.000 | 128 | 27 | 2 | 14 | 105 | 1 | 127 | 1.21e-29 | 112 |
| Msa0107190 | MtrunA17_Chr1g0171611 | 32.932 | 249 | 119 | 8 | 2 | 210 | 25 | 265 | 4.31e-29 | 116 |
| Msa0107190 | MtrunA17_Chr1g0171611 | 43.333 | 90 | 41 | 2 | 262 | 342 | 177 | 265 | 3.89e-12 | 67.0 |
| Msa0107190 | MtrunA17_Chr1g0162151 | 30.204 | 245 | 88 | 9 | 261 | 492 | 32 | 206 | 3.10e-20 | 89.4 |
| Msa0107190 | MtrunA17_Chr1g0162151 | 46.667 | 75 | 39 | 1 | 149 | 223 | 57 | 130 | 6.78e-14 | 70.9 |
| Msa0107190 | MtrunA17_Chr1g0163091 | 47.525 | 101 | 43 | 4 | 262 | 355 | 33 | 130 | 2.78e-19 | 85.1 |
| Msa0107190 | MtrunA17_Chr1g0163091 | 36.296 | 135 | 56 | 3 | 114 | 223 | 1 | 130 | 1.73e-15 | 74.3 |
| Msa0107190 | MtrunA17_Chr7g0233531 | 27.341 | 267 | 139 | 8 | 1 | 214 | 1 | 265 | 4.71e-18 | 84.3 |
| Msa0107190 | MtrunA17_Chr1g0163241 | 45.238 | 84 | 44 | 2 | 2 | 83 | 23 | 106 | 2.11e-16 | 77.0 |
| Msa0107190 | MtrunA17_Chr7g0233541 | 26.502 | 283 | 138 | 10 | 1 | 214 | 1 | 282 | 3.36e-16 | 79.3 |
| Msa0107190 | MtrunA17_Chr5g0419211 | 37.755 | 98 | 48 | 3 | 267 | 355 | 8 | 101 | 1.22e-13 | 67.4 |
| Msa0107190 | MtrunA17_Chr1g0163191 | 40.476 | 84 | 48 | 2 | 2 | 83 | 21 | 104 | 6.10e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 90 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGAATATGCGGGCAATTT+TGG | 0.164513 | 1_3:-17202961 | Msa0107190:CDS |
| TAGCTTCACTCTCATATTAT+TGG | 0.182224 | 1_3:-17205124 | Msa0107190:CDS |
| TTTGGAAGTTTAAGAGATAT+TGG | 0.253059 | 1_3:+17207152 | None:intergenic |
| ATGGTATTTGGCTTCAAAAT+TGG | 0.298035 | 1_3:-17207091 | Msa0107190:CDS |
| CTATCACCTTCAACGTGATA+TGG | 0.333665 | 1_3:+17206314 | None:intergenic |
| AGTTTAAGAGATATTGGATT+TGG | 0.342240 | 1_3:+17207158 | None:intergenic |
| CTCTGGACATGATTCCTTTG+TGG | 0.350591 | 1_3:+17205649 | None:intergenic |
| TGCAACGCAGTGATGGTATT+TGG | 0.352991 | 1_3:-17207103 | Msa0107190:CDS |
| AAGAAGCATGGTATATTTAG+TGG | 0.374789 | 1_3:-17202634 | Msa0107190:CDS |
| AATCTGACCCTCCTTTGTAT+TGG | 0.385935 | 1_3:+17207024 | None:intergenic |
| TATAATGAACATCTCGACTA+TGG | 0.388378 | 1_3:-17202559 | Msa0107190:CDS |
| TTCCGAGCCTGGTTCCTTTG+TGG | 0.399802 | 1_3:+17204493 | None:intergenic |
| GACAACACCCGTAAAAGATA+TGG | 0.404989 | 1_3:-17202980 | Msa0107190:CDS |
| TTGCAAAGGCTAATGGAAAC+CGG | 0.406149 | 1_3:-17205218 | Msa0107190:CDS |
| GACATGATTCCTTTGTGGTT+GGG | 0.406491 | 1_3:+17205654 | None:intergenic |
| GGACATGATTCCTTTGTGGT+TGG | 0.429402 | 1_3:+17205653 | None:intergenic |
| TATCTCTCTACAAAATTCCT+TGG | 0.444892 | 1_3:+17207194 | None:intergenic |
| GGTCAGTGTGCAAAATGAAT+TGG | 0.447786 | 1_3:-17207127 | Msa0107190:CDS |
| TTAGAAGTGTTGGTGAGGAC+AGG | 0.455257 | 1_3:-17205835 | Msa0107190:CDS |
| AGCAATGCCATTTGAGTTGG+CGG | 0.456539 | 1_3:+17206815 | None:intergenic |
| ATATCTCTTAAACTTCCAAA+TGG | 0.460593 | 1_3:-17207149 | Msa0107190:CDS |
| TGCTTCTTCAACAGCTCACT+TGG | 0.461685 | 1_3:+17202649 | None:intergenic |
| AAGAGAACCGCCAACTCAAA+TGG | 0.462516 | 1_3:-17206822 | Msa0107190:CDS |
| GAATTTACATGAGATGTTCA+AGG | 0.464486 | 1_3:-17202790 | Msa0107190:CDS |
| AAGGAACATGACTTGAAAGT+TGG | 0.470859 | 1_3:-17205737 | Msa0107190:CDS |
| GACTATGGTTGGTTCACTAA+AGG | 0.474605 | 1_3:-17202544 | Msa0107190:CDS |
| TGAGAGTAGGGGAAGGAACA+TGG | 0.483751 | 1_3:-17202597 | Msa0107190:CDS |
| ATAATACCTTGAAACTGCTC+TGG | 0.488121 | 1_3:+17205632 | None:intergenic |
| TGTGAGAGATTGCAAAGTAA+AGG | 0.489991 | 1_3:-17202509 | Msa0107190:CDS |
| AGTGAAACTAGGATTCTCAT+TGG | 0.490637 | 1_3:+17206349 | None:intergenic |
| TATCTCTTAAACTTCCAAAT+GGG | 0.498661 | 1_3:-17207148 | Msa0107190:CDS |
| ATAGTAATCGTGAATGAAAG+TGG | 0.499531 | 1_3:+17204524 | None:intergenic |
| AGTGAAGCTAGGATTCTCAT+TGG | 0.504117 | 1_3:+17205137 | None:intergenic |
| AACCACAAAGGAACCAGGCT+CGG | 0.517483 | 1_3:-17204495 | Msa0107190:CDS |
| TTTGGCTTCAAAATTGGAAG+AGG | 0.520115 | 1_3:-17207085 | Msa0107190:CDS |
| TAATGGAAACACAGGAGGCA+TGG | 0.520474 | 1_3:-17206429 | Msa0107190:CDS |
| TGTGCAAAATCATGTGTTCA+AGG | 0.521657 | 1_3:-17202455 | Msa0107190:CDS |
| ATAGTAATTGTGAATGATAG+TGG | 0.521706 | 1_3:+17205680 | None:intergenic |
| TATTCTTTCGAAAACCAACT+AGG | 0.522446 | 1_3:+17204737 | None:intergenic |
| ATTCTCATTGGGATGCTCAA+TGG | 0.528590 | 1_3:+17206361 | None:intergenic |
| CCAGGCTCGGAAAAGTTTCA+AGG | 0.529291 | 1_3:-17204482 | Msa0107190:intron |
| AGTAGCAATGCCATTTGAGT+TGG | 0.533991 | 1_3:+17206812 | None:intergenic |
| GTGAAGCTAGGATTCTCATT+GGG | 0.534567 | 1_3:+17205138 | None:intergenic |
| GTGAAACTAGGATTCTCATT+GGG | 0.534567 | 1_3:+17206350 | None:intergenic |
| AGAGATTGCAAAGTAAAGGC+TGG | 0.538378 | 1_3:-17202505 | Msa0107190:CDS |
| AAGGCAACAATTAGAAGTGT+TGG | 0.542696 | 1_3:-17204692 | Msa0107190:CDS |
| AAGGCAACAATTAGAAGTGT+TGG | 0.542696 | 1_3:-17205845 | Msa0107190:CDS |
| TCATGTCCAGAGCAGTTTCA+AGG | 0.542874 | 1_3:-17205638 | Msa0107190:intron |
| AATGGAAACACAGGAGGCAT+GGG | 0.543418 | 1_3:-17206428 | Msa0107190:CDS |
| TACATGAATGAGTTATTGCA+AGG | 0.543984 | 1_3:-17204716 | Msa0107190:CDS |
| ATGAACATCTCGACTATGGT+TGG | 0.544359 | 1_3:-17202555 | Msa0107190:CDS |
| ATTCCGTGGAGTTGAGAGTA+GGG | 0.547073 | 1_3:-17202609 | Msa0107190:CDS |
| GTCAGTGTGCAAAATGAATT+GGG | 0.549331 | 1_3:-17207126 | Msa0107190:CDS |
| TGAAACAGGCGATACCTAGT+TGG | 0.550112 | 1_3:-17204751 | Msa0107190:intron |
| TGTTCTTGCAGATGATTCCA+AGG | 0.559130 | 1_3:-17207211 | None:intergenic |
| TGCAAAGGCTAATGGAAACC+GGG | 0.564594 | 1_3:-17205217 | Msa0107190:CDS |
| ATCTCAACCACAAAGGAACC+AGG | 0.564790 | 1_3:-17204500 | Msa0107190:CDS |
| TATATTTAGTGGAAATTCCG+TGG | 0.570238 | 1_3:-17202623 | Msa0107190:CDS |
| AATTAGAAGTGTTGGTGAGG+AGG | 0.570785 | 1_3:-17204684 | Msa0107190:CDS |
| ATGGTTGGTTCACTAAAGGT+TGG | 0.573713 | 1_3:-17202540 | Msa0107190:CDS |
| GTAAAAGATATGGAATATGC+GGG | 0.574921 | 1_3:-17202970 | Msa0107190:CDS |
| TTATTGGCATGTCATGTTGA+AGG | 0.578517 | 1_3:-17205108 | Msa0107190:intron |
| AATAATATGAGAGTGAAGCT+AGG | 0.582815 | 1_3:+17205126 | None:intergenic |
| GTGTTGGTGAGGACAGGGTA+TGG | 0.583705 | 1_3:-17205829 | Msa0107190:CDS |
| TAGAAGTGTTGGTGAGGACA+GGG | 0.584202 | 1_3:-17205834 | Msa0107190:CDS |
| AATTCCGTGGAGTTGAGAGT+AGG | 0.585424 | 1_3:-17202610 | Msa0107190:CDS |
| GATAATATGAGAGTGAAACT+AGG | 0.591398 | 1_3:+17206338 | None:intergenic |
| TTGTCAATGTTAGTCCGTTG+AGG | 0.593883 | 1_3:+17206777 | None:intergenic |
| AACAATTAGAAGTGTTGGTG+AGG | 0.594775 | 1_3:-17204687 | Msa0107190:CDS |
| GCAGAGGCTAATGGAAACAC+AGG | 0.596384 | 1_3:-17206437 | Msa0107190:intron |
| CGTAAAAGATATGGAATATG+CGG | 0.600766 | 1_3:-17202971 | Msa0107190:CDS |
| AACAATTAGAAGTGTTGGTG+AGG | 0.601806 | 1_3:-17205840 | Msa0107190:CDS |
| CTACTACTGTTACACCTCAA+CGG | 0.609207 | 1_3:-17206791 | Msa0107190:CDS |
| AGTGAGCTGTTGAAGAAGCA+TGG | 0.617628 | 1_3:-17202646 | Msa0107190:CDS |
| AATTGGGTGCAACGCAGTGA+TGG | 0.620819 | 1_3:-17207110 | Msa0107190:CDS |
| TACTATTATCCCAACCACAA+AGG | 0.624953 | 1_3:-17205663 | Msa0107190:CDS |
| AAACTAAAAGATCTCCGCAT+CGG | 0.625099 | 1_3:+17207048 | None:intergenic |
| TTCCCCTACTCTCAACTCCA+CGG | 0.627106 | 1_3:+17202606 | None:intergenic |
| GGAAGGAACATGGTTTGTAG+AGG | 0.629163 | 1_3:-17202587 | Msa0107190:CDS |
| CGGGAACATAACTTGCAAGT+CGG | 0.642213 | 1_3:-17204581 | Msa0107190:CDS |
| GAATGAGTTATTGCAAGGGA+AGG | 0.643476 | 1_3:-17204711 | Msa0107190:CDS |
| TTTGCAAGTTTGCTCCGATG+CGG | 0.646883 | 1_3:-17207062 | Msa0107190:CDS |
| TACTATCATCTCAACCACAA+AGG | 0.651551 | 1_3:-17204507 | Msa0107190:CDS |
| TTCCGTGGAGTTGAGAGTAG+GGG | 0.660437 | 1_3:-17202608 | Msa0107190:CDS |
| ACATGAATGAGTTATTGCAA+GGG | 0.661417 | 1_3:-17204715 | Msa0107190:CDS |
| GTGGAGTTGAGAGTAGGGGA+AGG | 0.685462 | 1_3:-17202604 | Msa0107190:CDS |
| TCTTATAACATCATCAGACA+AGG | 0.698207 | 1_3:-17202766 | Msa0107190:intron |
| GAGGCTAATGGAAACACAGG+AGG | 0.702704 | 1_3:-17206434 | Msa0107190:CDS |
| TGGACATGTGCAGAAAACCA+AGG | 0.707757 | 1_3:-17203021 | Msa0107190:intron |
| TTGGTGAGGAGGATAGAACA+TGG | 0.724838 | 1_3:-17204673 | Msa0107190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTATTTTAATTATCACT+AGG | + | chr1_3:17204098-17204117 | None:intergenic | 10.0% |
| !! | AAAATATACATTAATAAAGT+GGG | + | chr1_3:17204291-17204310 | None:intergenic | 10.0% |
| !! | AAAAATATACATTAATAAAG+TGG | + | chr1_3:17204292-17204311 | None:intergenic | 10.0% |
| !!! | AAAACTTCAAAAATTATTTT+CGG | + | chr1_3:17204405-17204424 | None:intergenic | 10.0% |
| !! | TTATTGAATAAATTTACTTT+AGG | + | chr1_3:17204747-17204766 | None:intergenic | 10.0% |
| !!! | TAAAATATACAAATTTTTCA+AGG | - | chr1_3:17206398-17206417 | Msa0107190:CDS | 10.0% |
| !!! | CTAAGATTAATTTTTATATA+CGG | - | chr1_3:17206457-17206476 | Msa0107190:intron | 10.0% |
| !! | TAAACAGATGAATAATTAAA+AGG | + | chr1_3:17202947-17202966 | None:intergenic | 15.0% |
| !!! | CAAATGTGTAAAATATTTTA+AGG | - | chr1_3:17205299-17205318 | Msa0107190:intron | 15.0% |
| !!! | ATATTTTAAGGTTTAAATCT+TGG | - | chr1_3:17205311-17205330 | Msa0107190:intron | 15.0% |
| !! | TGCTTGTAATAAATTAATTA+AGG | + | chr1_3:17205835-17205854 | None:intergenic | 15.0% |
| !!! | CTATTTTATTTTACAGTTAT+TGG | + | chr1_3:17206217-17206236 | None:intergenic | 15.0% |
| !!! | TTAGTATTTTCAATGTCATT+AGG | + | chr1_3:17202783-17202802 | None:intergenic | 20.0% |
| !!! | AATTTGTATGGATTAAAAAG+TGG | + | chr1_3:17203034-17203053 | None:intergenic | 20.0% |
| !!! | TAAAAACTATTTTCAGCATT+TGG | + | chr1_3:17203177-17203196 | None:intergenic | 20.0% |
| !! | TATTACTGAAAAAGTAGTAT+AGG | + | chr1_3:17203368-17203387 | None:intergenic | 20.0% |
| !! | TATTAACAAGAAAGACATTT+GGG | + | chr1_3:17203469-17203488 | None:intergenic | 20.0% |
| !! | ACTAATAGAAAACATATTCA+AGG | - | chr1_3:17203507-17203526 | Msa0107190:intron | 20.0% |
| !!! | TTGATTTTCTTTTTCTTGAA+GGG | + | chr1_3:17204125-17204144 | None:intergenic | 20.0% |
| !!! | ATTGATTTTCTTTTTCTTGA+AGG | + | chr1_3:17204126-17204145 | None:intergenic | 20.0% |
| !!! | ATTTGTATGGATTAAAAAGT+GGG | + | chr1_3:17203033-17203052 | None:intergenic | 20.0% |
| !!! | AATTTGTATGGATTAAAAAG+TGG | + | chr1_3:17203034-17203053 | None:intergenic | 20.0% |
| !!! | TAATTTTTGAAGTTTTGCAA+AGG | - | chr1_3:17204409-17204428 | Msa0107190:intron | 20.0% |
| !! | TTCAATACAACTATTAACAA+AGG | + | chr1_3:17204695-17204714 | None:intergenic | 20.0% |
| !! | TACTAACAAAAACATATTCA+AGG | - | chr1_3:17204721-17204740 | Msa0107190:CDS | 20.0% |
| !!! | GAGAAAGAAGTTTATTTTAA+TGG | + | chr1_3:17205809-17205828 | None:intergenic | 20.0% |
| !!! | GATTTTAGTCATTCTAATAA+TGG | - | chr1_3:17206324-17206343 | Msa0107190:intron | 20.0% |
| !!! | TTTAAATATGTTTTTTGTCC+TGG | + | chr1_3:17206509-17206528 | None:intergenic | 20.0% |
| !! | AACAAAGAAAACATAGTTTA+AGG | + | chr1_3:17206804-17206823 | None:intergenic | 20.0% |
| !! | TTTATTCATATATATGCAGT+TGG | - | chr1_3:17206961-17206980 | Msa0107190:intron | 20.0% |
| ! | AGTTTAAGAGATATTGGATT+TGG | + | chr1_3:17202486-17202505 | None:intergenic | 25.0% |
| ! | TTTGGAAGTTTAAGAGATAT+TGG | + | chr1_3:17202492-17202511 | None:intergenic | 25.0% |
| ! | ATATCTCTTAAACTTCCAAA+TGG | - | chr1_3:17202492-17202511 | Msa0107190:CDS | 25.0% |
| ! | TATCTCTTAAACTTCCAAAT+GGG | - | chr1_3:17202493-17202512 | Msa0107190:CDS | 25.0% |
| !!! | CTTTTAGTTTTCCAATACAA+AGG | - | chr1_3:17202606-17202625 | Msa0107190:CDS | 25.0% |
| !! | CAAAATTTGAGATGAACTAA+GGG | + | chr1_3:17202995-17203014 | None:intergenic | 25.0% |
| !! | ATGTACTTTGGTAATTTGTA+TGG | + | chr1_3:17203046-17203065 | None:intergenic | 25.0% |
| ! | AGAACTAAAAACATGTACTT+TGG | + | chr1_3:17203058-17203077 | None:intergenic | 25.0% |
| !!! | TAGTTTTTAAAGTTTTGCAG+AGG | - | chr1_3:17203188-17203207 | Msa0107190:intron | 25.0% |
| ! | ATTAACAAGAAAGACATTTG+GGG | + | chr1_3:17203468-17203487 | None:intergenic | 25.0% |
| ! | CTATTAACAAGAAAGACATT+TGG | + | chr1_3:17203470-17203489 | None:intergenic | 25.0% |
| ! | ATATGAATGAGTTATTGCAA+GGG | - | chr1_3:17203773-17203792 | Msa0107190:intron | 25.0% |
| ! | ATAGTAATTGTGAATGATAG+TGG | + | chr1_3:17203964-17203983 | None:intergenic | 25.0% |
| !! | TGATTTTCTTTTTCTTGAAG+GGG | + | chr1_3:17204124-17204143 | None:intergenic | 25.0% |
| !!! | ATAAAGACATTGATTTAGCT+GGG | + | chr1_3:17204186-17204205 | None:intergenic | 25.0% |
| !!! | AATAAAGACATTGATTTAGC+TGG | + | chr1_3:17204187-17204206 | None:intergenic | 25.0% |
| ! | CACTATTACTGAGAAAAAAA+AGG | + | chr1_3:17204586-17204605 | None:intergenic | 25.0% |
| ! | AAACAAAAGAGAAAACGTAT+AGG | - | chr1_3:17204773-17204792 | Msa0107190:intron | 25.0% |
| !! | ATCCAGAATAAATTTTCGAA+TGG | - | chr1_3:17205014-17205033 | Msa0107190:intron | 25.0% |
| !! | TCCAGAATAAATTTTCGAAT+GGG | - | chr1_3:17205015-17205034 | Msa0107190:intron | 25.0% |
| !! | TTTGATTGATTGTAGTTTGT+TGG | + | chr1_3:17205283-17205302 | None:intergenic | 25.0% |
| ! | ATGTTAATGTTACTGTCATT+AGG | - | chr1_3:17205429-17205448 | Msa0107190:intron | 25.0% |
| ! | TGTTAATGTTACTGTCATTA+GGG | - | chr1_3:17205430-17205449 | Msa0107190:intron | 25.0% |
| ! | CATAACAAATACTTGTTCAA+CGG | - | chr1_3:17205493-17205512 | Msa0107190:intron | 25.0% |
| ! | ACAAAAACAACAGTAATAAG+TGG | + | chr1_3:17205626-17205645 | None:intergenic | 25.0% |
| !!! | ATTGTCATGTTTACCTTTTT+TGG | - | chr1_3:17205763-17205782 | Msa0107190:CDS | 25.0% |
| ! | AATAGAAAAAATGACTGATG+TGG | - | chr1_3:17206232-17206251 | Msa0107190:intron | 25.0% |
| ! | TTAAACACACTATCATCTAT+TGG | + | chr1_3:17206259-17206278 | None:intergenic | 25.0% |
| !! | AATAGATGATAGTGTGTTTA+AGG | - | chr1_3:17206258-17206277 | Msa0107190:intron | 25.0% |
| !! | ATAGATGATAGTGTGTTTAA+GGG | - | chr1_3:17206259-17206278 | Msa0107190:intron | 25.0% |
| !!! | TACAAAAACACATGGTTTTA+GGG | - | chr1_3:17206724-17206743 | Msa0107190:intron | 25.0% |
| TATCTCTCTACAAAATTCCT+TGG | + | chr1_3:17202450-17202469 | None:intergenic | 30.0% | |
| ! | GGAATTTTGTAGAGAGATAT+TGG | - | chr1_3:17202451-17202470 | Msa0107190:CDS | 30.0% |
| ! | ATGGTATTTGGCTTCAAAAT+TGG | - | chr1_3:17202550-17202569 | Msa0107190:CDS | 30.0% |
| !! | TTAGTTTTCCAATACAAAGG+AGG | - | chr1_3:17202609-17202628 | Msa0107190:CDS | 30.0% |
| ! | TAGTTTTCCAATACAAAGGA+GGG | - | chr1_3:17202610-17202629 | Msa0107190:CDS | 30.0% |
| ! | CCAAAATTTGAGATGAACTA+AGG | + | chr1_3:17202996-17203015 | None:intergenic | 30.0% |
| ! | CCTTAGTTCATCTCAAATTT+TGG | - | chr1_3:17202993-17203012 | Msa0107190:CDS | 30.0% |
| ! | AACTATTTTCAGCATTTGGA+AGG | + | chr1_3:17203173-17203192 | None:intergenic | 30.0% |
| GATAATATGAGAGTGAAACT+AGG | + | chr1_3:17203306-17203325 | None:intergenic | 30.0% | |
| AACTAGAAGAAGAGACATTT+AGG | - | chr1_3:17203612-17203631 | Msa0107190:intron | 30.0% | |
| TATTCTTTCGAAAACCAACT+AGG | + | chr1_3:17203752-17203771 | None:intergenic | 30.0% | |
| CATATGAATGAGTTATTGCA+AGG | - | chr1_3:17203772-17203791 | Msa0107190:intron | 30.0% | |
| !! | ATGCGCTTTTGTAATTTGTA+TGG | + | chr1_3:17204254-17204273 | None:intergenic | 30.0% |
| ! | ATCTGAAGGGTACAAAAAAA+AGG | + | chr1_3:17204381-17204400 | None:intergenic | 30.0% |
| ! | AATTATTTTCGGCATCTGAA+GGG | + | chr1_3:17204394-17204413 | None:intergenic | 30.0% |
| ! | AAATTATTTTCGGCATCTGA+AGG | + | chr1_3:17204395-17204414 | None:intergenic | 30.0% |
| ! | TTTTTGTGCATTTCTTATCC+CGG | + | chr1_3:17204445-17204464 | None:intergenic | 30.0% |
| AAATGCACAAAAACTGAAGA+TGG | - | chr1_3:17204452-17204471 | Msa0107190:intron | 30.0% | |
| AATGCACAAAAACTGAAGAT+GGG | - | chr1_3:17204453-17204472 | Msa0107190:intron | 30.0% | |
| AATAATATGAGAGTGAAGCT+AGG | + | chr1_3:17204518-17204537 | None:intergenic | 30.0% | |
| TAGCTTCACTCTCATATTAT+TGG | - | chr1_3:17204517-17204536 | Msa0107190:CDS | 30.0% | |
| TGTTGAAGGTGATAATAGAT+TGG | - | chr1_3:17204547-17204566 | Msa0107190:CDS | 30.0% | |
| ACTATACGAACTGATTGTAT+TGG | - | chr1_3:17204642-17204661 | Msa0107190:intron | 30.0% | |
| CTATTAACAAAGGAGACATT+TGG | + | chr1_3:17204685-17204704 | None:intergenic | 30.0% | |
| TTGATCTTCAAATGTGTCTT+TGG | + | chr1_3:17203589-17203608 | None:intergenic | 30.0% | |
| TATTCTTTCGAAAACCAACT+AGG | + | chr1_3:17203752-17203771 | None:intergenic | 30.0% | |
| TACATGAATGAGTTATTGCA+AGG | - | chr1_3:17204925-17204944 | Msa0107190:intron | 30.0% | |
| ACATGAATGAGTTATTGCAA+GGG | - | chr1_3:17204926-17204945 | Msa0107190:intron | 30.0% | |
| TCCCATTCGAAAATTTATTC+TGG | + | chr1_3:17205019-17205038 | None:intergenic | 30.0% | |
| ! | ATAAATTTTCGAATGGGAAG+TGG | - | chr1_3:17205021-17205040 | Msa0107190:intron | 30.0% |
| ATAGTAATCGTGAATGAAAG+TGG | + | chr1_3:17205120-17205139 | None:intergenic | 30.0% | |
| AACGCAATAAAATAGAGCTT+GGG | + | chr1_3:17205397-17205416 | None:intergenic | 30.0% | |
| !! | AGTATTTGTTATGGTTACGT+CGG | + | chr1_3:17205486-17205505 | None:intergenic | 30.0% |
| ! | CGTTGAACAAGTATTTGTTA+TGG | + | chr1_3:17205495-17205514 | None:intergenic | 30.0% |
| AAACAACAGTAATAAGTGGA+CGG | + | chr1_3:17205622-17205641 | None:intergenic | 30.0% | |
| GAGATATGAAAAGCCAAAAA+AGG | + | chr1_3:17205779-17205798 | None:intergenic | 30.0% | |
| ! | GCATATTCCATATCTTTTAC+GGG | + | chr1_3:17206671-17206690 | None:intergenic | 30.0% |
| ! | CGCATATTCCATATCTTTTA+CGG | + | chr1_3:17206672-17206691 | None:intergenic | 30.0% |
| CGTAAAAGATATGGAATATG+CGG | - | chr1_3:17206670-17206689 | Msa0107190:intron | 30.0% | |
| GTAAAAGATATGGAATATGC+GGG | - | chr1_3:17206671-17206690 | Msa0107190:intron | 30.0% | |
| !! | ATTTTGGAGATGGAATTTCA+AGG | - | chr1_3:17206696-17206715 | Msa0107190:intron | 30.0% |
| ! | GTACAAAAACACATGGTTTT+AGG | - | chr1_3:17206723-17206742 | Msa0107190:intron | 30.0% |
| !!! | ACAAAAACACATGGTTTTAG+GGG | - | chr1_3:17206725-17206744 | Msa0107190:intron | 30.0% |
| GAATTTACATGAGATGTTCA+AGG | - | chr1_3:17206851-17206870 | Msa0107190:intron | 30.0% | |
| TCTTATAACATCATCAGACA+AGG | - | chr1_3:17206875-17206894 | Msa0107190:intron | 30.0% | |
| ! | AAGAAGCATGGTATATTTAG+TGG | - | chr1_3:17207007-17207026 | Msa0107190:intron | 30.0% |
| TATATTTAGTGGAAATTCCG+TGG | - | chr1_3:17207018-17207037 | Msa0107190:CDS | 30.0% | |
| TATAATGAACATCTCGACTA+TGG | - | chr1_3:17207082-17207101 | Msa0107190:CDS | 30.0% | |
| GTCAGTGTGCAAAATGAATT+GGG | - | chr1_3:17202515-17202534 | Msa0107190:CDS | 35.0% | |
| ! | TTTGGCTTCAAAATTGGAAG+AGG | - | chr1_3:17202556-17202575 | Msa0107190:CDS | 35.0% |
| AAACTAAAAGATCTCCGCAT+CGG | + | chr1_3:17202596-17202615 | None:intergenic | 35.0% | |
| ! | CTTACCAGAAACTTTTTGCT+GGG | + | chr1_3:17202913-17202932 | None:intergenic | 35.0% |
| ! | ACTTACCAGAAACTTTTTGC+TGG | + | chr1_3:17202914-17202933 | None:intergenic | 35.0% |
| ! | TAAAGTTTTGCAGAGGCTAA+TGG | - | chr1_3:17203195-17203214 | Msa0107190:intron | 35.0% |
| GTGAAACTAGGATTCTCATT+GGG | + | chr1_3:17203294-17203313 | None:intergenic | 35.0% | |
| AGTGAAACTAGGATTCTCAT+TGG | + | chr1_3:17203295-17203314 | None:intergenic | 35.0% | |
| TTATCACCATATCACGTTGA+AGG | - | chr1_3:17203321-17203340 | Msa0107190:intron | 35.0% | |
| ! | AGAGGCTTTCATTTTACTAG+AGG | - | chr1_3:17203413-17203432 | Msa0107190:intron | 35.0% |
| ATTCATGCATGAAATGTGCA+AGG | + | chr1_3:17203682-17203701 | None:intergenic | 35.0% | |
| TTTATACCATGACCTGAAAC+AGG | - | chr1_3:17203721-17203740 | Msa0107190:intron | 35.0% | |
| ! | AAGGCAACAATTAGAAGTGT+TGG | - | chr1_3:17203796-17203815 | Msa0107190:intron | 35.0% |
| !! | AACAATTAGAAGTGTTGGTG+AGG | - | chr1_3:17203801-17203820 | Msa0107190:intron | 35.0% |
| !!! | AGTAGTTTTGTAATGACGCT+TGG | - | chr1_3:17203865-17203884 | Msa0107190:intron | 35.0% |
| !! | TGGTTGGAAGTCATTTTCAA+AGG | - | chr1_3:17203885-17203904 | Msa0107190:intron | 35.0% |
| AAGGAACATGACTTGAAAGT+TGG | - | chr1_3:17203904-17203923 | Msa0107190:intron | 35.0% | |
| TACTATTATCCCAACCACAA+AGG | - | chr1_3:17203978-17203997 | Msa0107190:intron | 35.0% | |
| ATAATACCTTGAAACTGCTC+TGG | + | chr1_3:17204012-17204031 | None:intergenic | 35.0% | |
| !!! | AAAAGCGCATGTTTTAATCC+TGG | - | chr1_3:17204264-17204283 | Msa0107190:intron | 35.0% |
| TACATTAATAAAGTGGGTCC+AGG | + | chr1_3:17204285-17204304 | None:intergenic | 35.0% | |
| ! | TGAAGTTTTGCAAAGGCTAA+TGG | - | chr1_3:17204416-17204435 | Msa0107190:intron | 35.0% |
| TTATTGGCATGTCATGTTGA+AGG | - | chr1_3:17204533-17204552 | Msa0107190:CDS | 35.0% | |
| TTTAAACCATGACCTGAAAC+AGG | - | chr1_3:17204876-17204895 | Msa0107190:intron | 35.0% | |
| ! | AAGGCAACAATTAGAAGTGT+TGG | - | chr1_3:17203796-17203815 | Msa0107190:intron | 35.0% |
| !! | AACAATTAGAAGTGTTGGTG+AGG | - | chr1_3:17203801-17203820 | Msa0107190:intron | 35.0% |
| TACTATCATCTCAACCACAA+AGG | - | chr1_3:17205134-17205153 | Msa0107190:CDS | 35.0% | |
| ACGCAATAAAATAGAGCTTG+GGG | + | chr1_3:17205396-17205415 | None:intergenic | 35.0% | |
| CAACGCAATAAAATAGAGCT+TGG | + | chr1_3:17205398-17205417 | None:intergenic | 35.0% | |
| ! | CAAGCTCTATTTTATTGCGT+TGG | - | chr1_3:17205396-17205415 | Msa0107190:intron | 35.0% |
| ACAAATACTTGTTCAACGGT+CGG | - | chr1_3:17205497-17205516 | Msa0107190:intron | 35.0% | |
| TGAGACAAATCAGTTTCACA+TGG | - | chr1_3:17205544-17205563 | Msa0107190:intron | 35.0% | |
| CAAATCAGTTTCACATGGTT+TGG | - | chr1_3:17205549-17205568 | Msa0107190:intron | 35.0% | |
| TTCTGTCAAAATGGAATGAG+CGG | - | chr1_3:17205587-17205606 | Msa0107190:intron | 35.0% | |
| AACAACAGTAATAAGTGGAC+GGG | + | chr1_3:17205621-17205640 | None:intergenic | 35.0% | |
| AGAGAGAAGAAACAAGAACA+GGG | - | chr1_3:17205887-17205906 | Msa0107190:intron | 35.0% | |
| !! | ATGAGGTTTTATGACAGCAA+GGG | + | chr1_3:17206150-17206169 | None:intergenic | 35.0% |
| GTCATAAAACCTCATGATGA+AGG | - | chr1_3:17206155-17206174 | Msa0107190:intron | 35.0% | |
| AACCTCATGATGAAGGATAA+TGG | - | chr1_3:17206162-17206181 | Msa0107190:intron | 35.0% | |
| ! | TCATGATGAAGGATAATGGT+GGG | - | chr1_3:17206166-17206185 | Msa0107190:intron | 35.0% |
| CTAAAAGTGATATATCTGCC+AGG | - | chr1_3:17206488-17206507 | Msa0107190:intron | 35.0% | |
| ! | GTGTTGTCTCTGATTTTTCT+TGG | + | chr1_3:17206649-17206668 | None:intergenic | 35.0% |
| CACACACATAGCTATATACA+TGG | + | chr1_3:17206925-17206944 | None:intergenic | 35.0% | |
| TGTGAGAGATTGCAAAGTAA+AGG | - | chr1_3:17207132-17207151 | Msa0107190:CDS | 35.0% | |
| TGTGCAAAATCATGTGTTCA+AGG | - | chr1_3:17207186-17207205 | Msa0107190:CDS | 35.0% | |
| ! | ATTTTGCACACTGACCCATT+TGG | + | chr1_3:17202510-17202529 | None:intergenic | 40.0% |
| GGTCAGTGTGCAAAATGAAT+TGG | - | chr1_3:17202514-17202533 | Msa0107190:CDS | 40.0% | |
| AATCTGACCCTCCTTTGTAT+TGG | + | chr1_3:17202620-17202639 | None:intergenic | 40.0% | |
| ! | AGTAGCAATGCCATTTGAGT+TGG | + | chr1_3:17202832-17202851 | None:intergenic | 40.0% |
| CTACTACTGTTACACCTCAA+CGG | - | chr1_3:17202850-17202869 | Msa0107190:intron | 40.0% | |
| TTGTCAATGTTAGTCCGTTG+AGG | + | chr1_3:17202867-17202886 | None:intergenic | 40.0% | |
| ATTCTCATTGGGATGCTCAA+TGG | + | chr1_3:17203283-17203302 | None:intergenic | 40.0% | |
| CTATCACCTTCAACGTGATA+TGG | + | chr1_3:17203330-17203349 | None:intergenic | 40.0% | |
| CGTTGAAGGTGATAGAAGAT+TGG | - | chr1_3:17203335-17203354 | Msa0107190:intron | 40.0% | |
| TTTGTACCAAACTGTGTGAG+AGG | - | chr1_3:17203395-17203414 | Msa0107190:intron | 40.0% | |
| GAATGAGTTATTGCAAGGGA+AGG | - | chr1_3:17203777-17203796 | Msa0107190:intron | 40.0% | |
| ! | GTTTTGTAATGACGCTTGGT+TGG | - | chr1_3:17203869-17203888 | Msa0107190:intron | 40.0% |
| GACATGATTCCTTTGTGGTT+GGG | + | chr1_3:17203990-17204009 | None:intergenic | 40.0% | |
| TTGCAAAGGCTAATGGAAAC+CGG | - | chr1_3:17204423-17204442 | Msa0107190:intron | 40.0% | |
| GTGAAGCTAGGATTCTCATT+GGG | + | chr1_3:17204506-17204525 | None:intergenic | 40.0% | |
| AGTGAAGCTAGGATTCTCAT+TGG | + | chr1_3:17204507-17204526 | None:intergenic | 40.0% | |
| GAATGAGTTATTGCAAGGGA+AGG | - | chr1_3:17203777-17203796 | Msa0107190:intron | 40.0% | |
| !! | AATTAGAAGTGTTGGTGAGG+AGG | - | chr1_3:17203804-17203823 | Msa0107190:intron | 40.0% |
| ! | ATTTTCGAATGGGAAGTGGT+TGG | - | chr1_3:17205025-17205044 | Msa0107190:intron | 40.0% |
| !! | GTGGTTGGAAGTCATTTTCA+CGG | - | chr1_3:17205040-17205059 | Msa0107190:intron | 40.0% |
| !! | TGGTTGGAAGTCATTTTCAC+GGG | - | chr1_3:17205041-17205060 | Msa0107190:intron | 40.0% |
| CGCAATAAAATAGAGCTTGG+GGG | + | chr1_3:17205395-17205414 | None:intergenic | 40.0% | |
| GTTATGGTTACGTCGGATTT+CGG | + | chr1_3:17205479-17205498 | None:intergenic | 40.0% | |
| ! | CAGTTTCACATGGTTTGGAA+CGG | - | chr1_3:17205554-17205573 | Msa0107190:intron | 40.0% |
| ACATACATTGGACAGTGTGT+AGG | + | chr1_3:17205710-17205729 | None:intergenic | 40.0% | |
| ! | GTTTGATGGCACACATACAT+TGG | + | chr1_3:17205722-17205741 | None:intergenic | 40.0% |
| ATGTATGTGTGCCATCAAAC+AGG | - | chr1_3:17205722-17205741 | Msa0107190:CDS | 40.0% | |
| TGTATGTGTGCCATCAAACA+GGG | - | chr1_3:17205723-17205742 | Msa0107190:CDS | 40.0% | |
| ! | TTGTTTCTTCTCTCTGGTAG+TGG | + | chr1_3:17205882-17205901 | None:intergenic | 40.0% |
| ! | CTGTTCTTGTTTCTTCTCTC+TGG | + | chr1_3:17205888-17205907 | None:intergenic | 40.0% |
| CAGAGAGAAGAAACAAGAAC+AGG | - | chr1_3:17205886-17205905 | Msa0107190:intron | 40.0% | |
| GAGATGAGAGATATACAGAG+AGG | - | chr1_3:17205928-17205947 | Msa0107190:intron | 40.0% | |
| !! | TGAGGTTTTATGACAGCAAG+GGG | + | chr1_3:17206149-17206168 | None:intergenic | 40.0% |
| !! | CATGAGGTTTTATGACAGCA+AGG | + | chr1_3:17206151-17206170 | None:intergenic | 40.0% |
| CACCATTATCCTTCATCATG+AGG | + | chr1_3:17206167-17206186 | None:intergenic | 40.0% | |
| ! | CTCATGATGAAGGATAATGG+TGG | - | chr1_3:17206165-17206184 | Msa0107190:intron | 40.0% |
| GTTGTGGGTAGTGTAAATTG+TGG | - | chr1_3:17206188-17206207 | Msa0107190:intron | 40.0% | |
| AGGGATCTACTGAAGAAGTT+GGG | + | chr1_3:17206590-17206609 | None:intergenic | 40.0% | |
| ACATGTCCACAAACTTCTCA+GGG | + | chr1_3:17206609-17206628 | None:intergenic | 40.0% | |
| ! | CTGATTTTTCTTGGACTCCT+TGG | + | chr1_3:17206640-17206659 | None:intergenic | 40.0% |
| GACAACACCCGTAAAAGATA+TGG | - | chr1_3:17206661-17206680 | Msa0107190:intron | 40.0% | |
| ! | ATGGAATATGCGGGCAATTT+TGG | - | chr1_3:17206680-17206699 | Msa0107190:intron | 40.0% |
| AGGAGCTGTACAAAAACACA+TGG | - | chr1_3:17206716-17206735 | Msa0107190:intron | 40.0% | |
| ATGAACATCTCGACTATGGT+TGG | - | chr1_3:17207086-17207105 | Msa0107190:CDS | 40.0% | |
| ! | GACTATGGTTGGTTCACTAA+AGG | - | chr1_3:17207097-17207116 | Msa0107190:CDS | 40.0% |
| ! | ATGGTTGGTTCACTAAAGGT+TGG | - | chr1_3:17207101-17207120 | Msa0107190:CDS | 40.0% |
| AGAGATTGCAAAGTAAAGGC+TGG | - | chr1_3:17207136-17207155 | Msa0107190:CDS | 40.0% | |
| TGCAACGCAGTGATGGTATT+TGG | - | chr1_3:17202538-17202557 | Msa0107190:CDS | 45.0% | |
| ! | TTTGCAAGTTTGCTCCGATG+CGG | - | chr1_3:17202579-17202598 | Msa0107190:CDS | 45.0% |
| ! | GCGGTTCTCTTTTTCTTGAG+GGG | + | chr1_3:17202810-17202829 | None:intergenic | 45.0% |
| ! | GGCGGTTCTCTTTTTCTTGA+GGG | + | chr1_3:17202811-17202830 | None:intergenic | 45.0% |
| ! | TGGCGGTTCTCTTTTTCTTG+AGG | + | chr1_3:17202812-17202831 | None:intergenic | 45.0% |
| AAGAGAACCGCCAACTCAAA+TGG | - | chr1_3:17202819-17202838 | Msa0107190:intron | 45.0% | |
| !! | AGCAATGCCATTTGAGTTGG+CGG | + | chr1_3:17202829-17202848 | None:intergenic | 45.0% |
| GCAACCCAGCAAAAAGTTTC+TGG | - | chr1_3:17202906-17202925 | Msa0107190:intron | 45.0% | |
| TAATGGAAACACAGGAGGCA+TGG | - | chr1_3:17203212-17203231 | Msa0107190:intron | 45.0% | |
| ! | AATGGAAACACAGGAGGCAT+GGG | - | chr1_3:17203213-17203232 | Msa0107190:intron | 45.0% |
| TGAAAGCCTCTCACACAGTT+TGG | + | chr1_3:17203404-17203423 | None:intergenic | 45.0% | |
| AACTAGGTAACGCCTGTTTC+AGG | + | chr1_3:17203736-17203755 | None:intergenic | 45.0% | |
| TGAAACAGGCGTTACCTAGT+TGG | - | chr1_3:17203735-17203754 | Msa0107190:intron | 45.0% | |
| !! | TTAGAAGTGTTGGTGAGGAC+AGG | - | chr1_3:17203806-17203825 | Msa0107190:intron | 45.0% |
| !! | TAGAAGTGTTGGTGAGGACA+GGG | - | chr1_3:17203807-17203826 | Msa0107190:intron | 45.0% |
| GGACATGATTCCTTTGTGGT+TGG | + | chr1_3:17203991-17204010 | None:intergenic | 45.0% | |
| CTCTGGACATGATTCCTTTG+TGG | + | chr1_3:17203995-17204014 | None:intergenic | 45.0% | |
| TCATGTCCAGAGCAGTTTCA+AGG | - | chr1_3:17204003-17204022 | Msa0107190:intron | 45.0% | |
| TGCAAAGGCTAATGGAAACC+GGG | - | chr1_3:17204424-17204443 | Msa0107190:intron | 45.0% | |
| ! | AACTAGGTATCGCCTGTTTC+AGG | + | chr1_3:17204891-17204910 | None:intergenic | 45.0% |
| TGAAACAGGCGATACCTAGT+TGG | - | chr1_3:17204890-17204909 | Msa0107190:intron | 45.0% | |
| TTGGTGAGGAGGATAGAACA+TGG | - | chr1_3:17204968-17204987 | Msa0107190:intron | 45.0% | |
| ! | CGGGAACATAACTTGCAAGT+CGG | - | chr1_3:17205060-17205079 | Msa0107190:intron | 45.0% |
| ATCTCAACCACAAAGGAACC+AGG | - | chr1_3:17205141-17205160 | Msa0107190:CDS | 45.0% | |
| CGAAAGCGGTTCTGTCAAAA+TGG | - | chr1_3:17205578-17205597 | Msa0107190:intron | 45.0% | |
| ! | CAGTAATAAGTGGACGGGTT+CGG | + | chr1_3:17205616-17205635 | None:intergenic | 45.0% |
| TCAAGACACACCCTGTTTGA+TGG | + | chr1_3:17205736-17205755 | None:intergenic | 45.0% | |
| !! | TTCTTCTCTCTGGTAGTGGT+GGG | + | chr1_3:17205878-17205897 | None:intergenic | 45.0% |
| !! | TTTCTTCTCTCTGGTAGTGG+TGG | + | chr1_3:17205879-17205898 | None:intergenic | 45.0% |
| GGTCTAACGGAATAACAGGT+GGG | + | chr1_3:17206009-17206028 | None:intergenic | 45.0% | |
| GACCGTTTCAACGTCAGTTT+CGG | + | chr1_3:17206041-17206060 | None:intergenic | 45.0% | |
| GAAACTGACGTTGAAACGGT+CGG | - | chr1_3:17206040-17206059 | Msa0107190:intron | 45.0% | |
| AAACTGACGTTGAAACGGTC+GGG | - | chr1_3:17206041-17206060 | Msa0107190:intron | 45.0% | |
| GGTTCACGTGTTCTGATCTA+CGG | - | chr1_3:17206067-17206086 | Msa0107190:intron | 45.0% | |
| GTTCACGTGTTCTGATCTAC+GGG | - | chr1_3:17206068-17206087 | Msa0107190:intron | 45.0% | |
| TCTGATCTACGGGTGTTCTT+CGG | - | chr1_3:17206078-17206097 | Msa0107190:intron | 45.0% | |
| TTCTTCGGTGAGCAGTTGTT+GGG | - | chr1_3:17206093-17206112 | Msa0107190:intron | 45.0% | |
| !! | TGAAGGATAATGGTGGGTTG+TGG | - | chr1_3:17206172-17206191 | Msa0107190:intron | 45.0% |
| !! | GAAGGATAATGGTGGGTTGT+GGG | - | chr1_3:17206173-17206192 | Msa0107190:intron | 45.0% |
| GGGATCTACTGAAGAAGTTG+GGG | + | chr1_3:17206589-17206608 | None:intergenic | 45.0% | |
| CAGGGATCTACTGAAGAAGT+TGG | + | chr1_3:17206591-17206610 | None:intergenic | 45.0% | |
| GTAGATCCCTGAGAAGTTTG+TGG | - | chr1_3:17206600-17206619 | Msa0107190:intron | 45.0% | |
| CACATGTCCACAAACTTCTC+AGG | + | chr1_3:17206610-17206629 | None:intergenic | 45.0% | |
| TGGACATGTGCAGAAAACCA+AGG | - | chr1_3:17206620-17206639 | Msa0107190:intron | 45.0% | |
| !! | TATGCGGGCAATTTTGGAGA+TGG | - | chr1_3:17206686-17206705 | Msa0107190:intron | 45.0% |
| TGCTTCTTCAACAGCTCACT+TGG | + | chr1_3:17206995-17207014 | None:intergenic | 45.0% | |
| AGTGAGCTGTTGAAGAAGCA+TGG | - | chr1_3:17206995-17207014 | Msa0107190:intron | 45.0% | |
| AATTCCGTGGAGTTGAGAGT+AGG | - | chr1_3:17207031-17207050 | Msa0107190:CDS | 45.0% | |
| ATTCCGTGGAGTTGAGAGTA+GGG | - | chr1_3:17207032-17207051 | Msa0107190:CDS | 45.0% | |
| ! | GGAAGGAACATGGTTTGTAG+AGG | - | chr1_3:17207054-17207073 | Msa0107190:CDS | 45.0% |
| !! | AAAATATACATAAATAAAAT+GGG | + | chr1_3:17203084-17203103 | None:intergenic | 5.0% |
| !! | AAAAATATACATAAATAAAA+TGG | + | chr1_3:17203085-17203104 | None:intergenic | 5.0% |
| AATTGGGTGCAACGCAGTGA+TGG | - | chr1_3:17202531-17202550 | Msa0107190:CDS | 50.0% | |
| GCAGAGGCTAATGGAAACAC+AGG | - | chr1_3:17203204-17203223 | Msa0107190:intron | 50.0% | |
| GAGGCTAATGGAAACACAGG+AGG | - | chr1_3:17203207-17203226 | Msa0107190:intron | 50.0% | |
| ! | GTAACGCCTGTTTCAGGTCA+TGG | + | chr1_3:17203730-17203749 | None:intergenic | 50.0% |
| TTTGTGCCTAGCTGTGTGAG+AGG | - | chr1_3:17204609-17204628 | Msa0107190:CDS | 50.0% | |
| TGAAAGCCTCTCACACAGCT+AGG | + | chr1_3:17204618-17204637 | None:intergenic | 50.0% | |
| ! | GTATCGCCTGTTTCAGGTCA+TGG | + | chr1_3:17204885-17204904 | None:intergenic | 50.0% |
| AACCACAAAGGAACCAGGCT+CGG | - | chr1_3:17205146-17205165 | Msa0107190:CDS | 50.0% | |
| ! | CCTTGAAACTTTTCCGAGCC+TGG | + | chr1_3:17205162-17205181 | None:intergenic | 50.0% |
| CCAGGCTCGGAAAAGTTTCA+AGG | - | chr1_3:17205159-17205178 | Msa0107190:CDS | 50.0% | |
| TGGTTACGTCGGATTTCGGT+CGG | + | chr1_3:17205475-17205494 | None:intergenic | 50.0% | |
| GTTCAACGGTCGGATGTGTA+CGG | - | chr1_3:17205507-17205526 | Msa0107190:intron | 50.0% | |
| TTCAACGGTCGGATGTGTAC+GGG | - | chr1_3:17205508-17205527 | Msa0107190:intron | 50.0% | |
| ! | TGGTTTGGAACGGACGAAAG+CGG | - | chr1_3:17205564-17205583 | Msa0107190:intron | 50.0% |
| TAACGGAATAACAGGTGGGC+CGG | + | chr1_3:17206005-17206024 | None:intergenic | 50.0% | |
| GGGTCTAACGGAATAACAGG+TGG | + | chr1_3:17206010-17206029 | None:intergenic | 50.0% | |
| GACGGGTCTAACGGAATAAC+AGG | + | chr1_3:17206013-17206032 | None:intergenic | 50.0% | |
| GTTTCAACGTCAGTTTCGGC+GGG | + | chr1_3:17206037-17206056 | None:intergenic | 50.0% | |
| CGTTTCAACGTCAGTTTCGG+CGG | + | chr1_3:17206038-17206057 | None:intergenic | 50.0% | |
| CGCCGAAACTGACGTTGAAA+CGG | - | chr1_3:17206036-17206055 | Msa0107190:intron | 50.0% | |
| GTTCTTCGGTGAGCAGTTGT+TGG | - | chr1_3:17206092-17206111 | Msa0107190:intron | 50.0% | |
| GTGTGTAGAGTGTGTGTTCG+CGG | - | chr1_3:17206283-17206302 | Msa0107190:intron | 50.0% | |
| TTCCGTGGAGTTGAGAGTAG+GGG | - | chr1_3:17207033-17207052 | Msa0107190:CDS | 50.0% | |
| TTCCCCTACTCTCAACTCCA+CGG | + | chr1_3:17207038-17207057 | None:intergenic | 50.0% | |
| TGAGAGTAGGGGAAGGAACA+TGG | - | chr1_3:17207044-17207063 | Msa0107190:CDS | 50.0% | |
| ! | GTGTTGGTGAGGACAGGGTA+TGG | - | chr1_3:17203812-17203831 | Msa0107190:intron | 55.0% |
| TTCCGAGCCTGGTTCCTTTG+TGG | + | chr1_3:17205151-17205170 | None:intergenic | 55.0% | |
| !! | AGCTTGGGGGACTAGCTGAA+GGG | + | chr1_3:17205382-17205401 | None:intergenic | 55.0% |
| ! | TACAACCGAGCCAAAGCACC+CGG | - | chr1_3:17205983-17206002 | Msa0107190:intron | 55.0% |
| AACGGAATAACAGGTGGGCC+GGG | + | chr1_3:17206004-17206023 | None:intergenic | 55.0% | |
| GACGTTGAAACGGTCGGGAA+TGG | - | chr1_3:17206046-17206065 | Msa0107190:intron | 55.0% | |
| GTGGAGTTGAGAGTAGGGGA+AGG | - | chr1_3:17207037-17207056 | Msa0107190:CDS | 55.0% | |
| !! | GAGCTTGGGGGACTAGCTGA+AGG | + | chr1_3:17205383-17205402 | None:intergenic | 60.0% |
| GGTCGGATGTGTACGGGCTT+CGG | - | chr1_3:17205514-17205533 | Msa0107190:intron | 60.0% | |
| ACGTCAGTTTCGGCGGGTGA+CGG | + | chr1_3:17206031-17206050 | None:intergenic | 60.0% | |
| TGACAGCAAGGGGTGAGCAC+CGG | + | chr1_3:17206139-17206158 | None:intergenic | 60.0% | |
| TCTCACACTTCACGCGCGCG+TGG | + | chr1_3:17205660-17205679 | None:intergenic | 65.0% | |
| AACAGGTGGGCCGGGTGCTT+TGG | + | chr1_3:17205996-17206015 | None:intergenic | 65.0% | |
| !! | TCGGCGGGTGACGGGTCTAA+CGG | + | chr1_3:17206022-17206041 | None:intergenic | 65.0% |
| CGTCAGTTTCGGCGGGTGAC+GGG | + | chr1_3:17206030-17206049 | None:intergenic | 65.0% | |
| ! | CGGTCGGTTACGGGCGGATT+CGG | + | chr1_3:17206119-17206138 | None:intergenic | 65.0% |
| CGAATCCGCCCGTAACCGAC+CGG | - | chr1_3:17206117-17206136 | Msa0107190:intron | 65.0% | |
| !! | GGTGAGCACCGGTCGGTTAC+GGG | + | chr1_3:17206128-17206147 | None:intergenic | 65.0% |
| !! | GGGTGAGCACCGGTCGGTTA+CGG | + | chr1_3:17206129-17206148 | None:intergenic | 65.0% |
| !! | AGCAAGGGGTGAGCACCGGT+CGG | + | chr1_3:17206135-17206154 | None:intergenic | 65.0% |
| GTGGGCCGGGTGCTTTGGCT+CGG | + | chr1_3:17205991-17206010 | None:intergenic | 70.0% | |
| !! | GAGCACCGGTCGGTTACGGG+CGG | + | chr1_3:17206125-17206144 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 17202441 | 17207222 | 17202441 | ID=Msa0107190;Name=Msa0107190 |
| chr1_3 | mRNA | 17202441 | 17207222 | 17202441 | ID=Msa0107190-mRNA-1;Parent=Msa0107190;Name=Msa0107190-mRNA-1;_AED=0.17;_eAED=0.24;_QI=0|0|0|1|0.55|0.3|10|0|493 |
| chr1_3 | exon | 17207013 | 17207222 | 17207013 | ID=Msa0107190-mRNA-1:exon:6553;Parent=Msa0107190-mRNA-1 |
| chr1_3 | exon | 17206736 | 17206841 | 17206736 | ID=Msa0107190-mRNA-1:exon:6552;Parent=Msa0107190-mRNA-1 |
| chr1_3 | exon | 17206328 | 17206455 | 17206328 | ID=Msa0107190-mRNA-1:exon:6551;Parent=Msa0107190-mRNA-1 |
| chr1_3 | exon | 17205639 | 17205864 | 17205639 | ID=Msa0107190-mRNA-1:exon:6550;Parent=Msa0107190-mRNA-1 |
| chr1_3 | exon | 17205109 | 17205242 | 17205109 | ID=Msa0107190-mRNA-1:exon:6549;Parent=Msa0107190-mRNA-1 |
| chr1_3 | exon | 17204665 | 17204765 | 17204665 | ID=Msa0107190-mRNA-1:exon:6548;Parent=Msa0107190-mRNA-1 |
| chr1_3 | exon | 17204483 | 17204643 | 17204483 | ID=Msa0107190-mRNA-1:exon:6547;Parent=Msa0107190-mRNA-1 |
| chr1_3 | exon | 17202917 | 17203030 | 17202917 | ID=Msa0107190-mRNA-1:exon:6546;Parent=Msa0107190-mRNA-1 |
| chr1_3 | exon | 17202767 | 17202825 | 17202767 | ID=Msa0107190-mRNA-1:exon:6545;Parent=Msa0107190-mRNA-1 |
| chr1_3 | exon | 17202441 | 17202683 | 17202441 | ID=Msa0107190-mRNA-1:exon:6544;Parent=Msa0107190-mRNA-1 |
| chr1_3 | CDS | 17207013 | 17207222 | 17207013 | ID=Msa0107190-mRNA-1:cds;Parent=Msa0107190-mRNA-1 |
| chr1_3 | CDS | 17206736 | 17206841 | 17206736 | ID=Msa0107190-mRNA-1:cds;Parent=Msa0107190-mRNA-1 |
| chr1_3 | CDS | 17206328 | 17206455 | 17206328 | ID=Msa0107190-mRNA-1:cds;Parent=Msa0107190-mRNA-1 |
| chr1_3 | CDS | 17205639 | 17205864 | 17205639 | ID=Msa0107190-mRNA-1:cds;Parent=Msa0107190-mRNA-1 |
| chr1_3 | CDS | 17205109 | 17205242 | 17205109 | ID=Msa0107190-mRNA-1:cds;Parent=Msa0107190-mRNA-1 |
| chr1_3 | CDS | 17204665 | 17204765 | 17204665 | ID=Msa0107190-mRNA-1:cds;Parent=Msa0107190-mRNA-1 |
| chr1_3 | CDS | 17204483 | 17204643 | 17204483 | ID=Msa0107190-mRNA-1:cds;Parent=Msa0107190-mRNA-1 |
| chr1_3 | CDS | 17202917 | 17203030 | 17202917 | ID=Msa0107190-mRNA-1:cds;Parent=Msa0107190-mRNA-1 |
| chr1_3 | CDS | 17202767 | 17202825 | 17202767 | ID=Msa0107190-mRNA-1:cds;Parent=Msa0107190-mRNA-1 |
| chr1_3 | CDS | 17202441 | 17202683 | 17202441 | ID=Msa0107190-mRNA-1:cds;Parent=Msa0107190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
