Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107220 | KEH26464.1 | 57.798 | 109 | 23 | 2 | 430 | 521 | 77 | 179 | 1.90e-20 | 106 |
| Msa0107220 | KEH26464.1 | 68.277 | 476 | 93 | 9 | 1 | 429 | 2 | 466 | 0.0 | 626 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107220 | A0A072U9K2 | 57.798 | 109 | 23 | 2 | 430 | 521 | 77 | 179 | 9.09e-21 | 106 |
| Msa0107220 | A0A072U9K2 | 68.277 | 476 | 93 | 9 | 1 | 429 | 2 | 466 | 0.0 | 626 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0107220 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107220 | MtrunA17_Chr6g0476171 | 64.311 | 283 | 36 | 4 | 168 | 429 | 3 | 241 | 4.76e-119 | 350 |
| Msa0107220 | MtrunA17_Chr1g0163101 | 60.209 | 191 | 35 | 4 | 1 | 170 | 1 | 171 | 4.24e-67 | 214 |
| Msa0107220 | MtrunA17_Chr1g0163101 | 74.725 | 91 | 20 | 1 | 431 | 521 | 77 | 164 | 8.54e-36 | 131 |
| Msa0107220 | MtrunA17_Chr1g0163141 | 65.359 | 153 | 39 | 2 | 32 | 170 | 18 | 170 | 1.18e-56 | 187 |
| Msa0107220 | MtrunA17_Chr1g0163141 | 47.015 | 134 | 50 | 3 | 409 | 521 | 30 | 163 | 2.01e-25 | 103 |
| Msa0107220 | MtrunA17_Chr1g0163131 | 38.629 | 321 | 130 | 9 | 5 | 278 | 6 | 306 | 2.39e-56 | 191 |
| Msa0107220 | MtrunA17_Chr1g0163131 | 72.826 | 92 | 23 | 1 | 430 | 521 | 77 | 166 | 3.26e-33 | 128 |
| Msa0107220 | MtrunA17_Chr1g0163131 | 45.455 | 77 | 40 | 1 | 357 | 433 | 232 | 306 | 8.83e-14 | 72.4 |
| Msa0107220 | MtrunA17_Chr6g0476181 | 62.252 | 151 | 40 | 2 | 32 | 170 | 9 | 154 | 2.39e-55 | 183 |
| Msa0107220 | MtrunA17_Chr6g0476181 | 57.798 | 109 | 23 | 2 | 430 | 521 | 45 | 147 | 3.09e-26 | 104 |
| Msa0107220 | MtrunA17_Chr1g0163181 | 31.522 | 460 | 233 | 17 | 15 | 428 | 1 | 424 | 7.88e-55 | 190 |
| Msa0107220 | MtrunA17_Chr1g0163261 | 37.736 | 318 | 122 | 11 | 17 | 290 | 9 | 294 | 2.19e-50 | 174 |
| Msa0107220 | MtrunA17_Chr1g0162161 | 56.954 | 151 | 36 | 2 | 32 | 170 | 11 | 144 | 1.85e-47 | 162 |
| Msa0107220 | MtrunA17_Chr1g0162161 | 71.739 | 92 | 25 | 1 | 430 | 521 | 47 | 137 | 9.77e-36 | 130 |
| Msa0107220 | MtrunA17_Chr1g0163201 | 31.195 | 452 | 166 | 20 | 32 | 428 | 26 | 387 | 4.84e-44 | 160 |
| Msa0107220 | MtrunA17_Chr1g0163161 | 53.741 | 147 | 37 | 4 | 37 | 170 | 1 | 129 | 3.04e-40 | 142 |
| Msa0107220 | MtrunA17_Chr1g0163161 | 63.717 | 113 | 38 | 1 | 409 | 518 | 8 | 120 | 2.71e-38 | 136 |
| Msa0107220 | MtrunA17_Chr1g0163081 | 52.980 | 151 | 37 | 3 | 32 | 170 | 13 | 141 | 3.64e-40 | 142 |
| Msa0107220 | MtrunA17_Chr1g0163081 | 75.000 | 84 | 16 | 2 | 430 | 513 | 49 | 127 | 1.44e-30 | 116 |
| Msa0107220 | MtrunA17_Chr1g0163251 | 35.032 | 314 | 129 | 13 | 26 | 295 | 14 | 296 | 6.24e-40 | 149 |
| Msa0107220 | MtrunA17_Chr1g0163231 | 35.714 | 308 | 118 | 11 | 17 | 280 | 9 | 280 | 9.36e-40 | 146 |
| Msa0107220 | MtrunA17_Chr1g0163121 | 47.682 | 151 | 39 | 3 | 32 | 170 | 18 | 140 | 2.80e-34 | 126 |
| Msa0107220 | MtrunA17_Chr1g0163121 | 65.217 | 92 | 20 | 2 | 430 | 521 | 54 | 133 | 6.14e-28 | 108 |
| Msa0107220 | MtrunA17_Chr1g0171611 | 33.446 | 296 | 129 | 9 | 17 | 280 | 9 | 268 | 1.24e-33 | 129 |
| Msa0107220 | MtrunA17_Chr1g0163111 | 32.669 | 251 | 109 | 10 | 199 | 428 | 12 | 223 | 3.11e-31 | 120 |
| Msa0107220 | MtrunA17_Chr1g0163151 | 31.746 | 252 | 100 | 8 | 199 | 428 | 15 | 216 | 3.73e-27 | 109 |
| Msa0107220 | MtrunA17_Chr1g0163091 | 43.919 | 148 | 55 | 5 | 177 | 303 | 3 | 143 | 3.05e-24 | 99.4 |
| Msa0107220 | MtrunA17_Chr1g0162151 | 29.682 | 283 | 93 | 9 | 177 | 432 | 3 | 206 | 5.73e-22 | 94.4 |
| Msa0107220 | MtrunA17_Chr1g0208771 | 23.913 | 460 | 263 | 18 | 36 | 431 | 24 | 460 | 1.43e-20 | 94.4 |
| Msa0107220 | MtrunA17_Chr8g0390841 | 23.469 | 490 | 285 | 21 | 15 | 428 | 37 | 512 | 1.26e-19 | 92.0 |
| Msa0107220 | MtrunA17_Chr4g0067431 | 26.061 | 330 | 179 | 15 | 12 | 291 | 10 | 324 | 1.92e-18 | 86.7 |
| Msa0107220 | MtrunA17_Chr1g0163071 | 25.890 | 309 | 160 | 12 | 33 | 291 | 10 | 299 | 7.43e-17 | 81.6 |
| Msa0107220 | MtrunA17_Chr1g0163241 | 35.772 | 123 | 58 | 5 | 32 | 140 | 30 | 145 | 2.41e-15 | 73.9 |
| Msa0107220 | MtrunA17_Chr3g0103181 | 23.934 | 305 | 172 | 12 | 7 | 278 | 2 | 279 | 2.07e-14 | 73.6 |
| Msa0107220 | MtrunA17_Chr7g0233561 | 24.847 | 326 | 169 | 15 | 10 | 281 | 11 | 314 | 2.68e-13 | 71.2 |
| Msa0107220 | MtrunA17_Chr1g0163191 | 37.037 | 108 | 42 | 4 | 26 | 107 | 14 | 121 | 4.16e-13 | 67.4 |
| Msa0107220 | MtrunA17_Chr1g0163221 | 24.375 | 320 | 188 | 13 | 11 | 294 | 5 | 306 | 6.72e-13 | 70.1 |
| Msa0107220 | MtrunA17_Chr3g0103151 | 30.000 | 140 | 82 | 5 | 15 | 138 | 10 | 149 | 8.05e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 86 sgRNAs with CRISPR-Local
Find 407 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGAATATGTGGGCAATTT+TGG | 0.142869 | 1_3:+17220874 | Msa0107220:CDS |
| AGAGAATGATTACTAGTTCT+TGG | 0.263261 | 1_3:-17218256 | None:intergenic |
| GGGCATGGTTCCTTTGTGGC+TGG | 0.277429 | 1_3:-17220598 | None:intergenic |
| TACGATATTTGTTAGAGTTT+TGG | 0.280588 | 1_3:-17226107 | None:intergenic |
| CAGACCCATTTGGAAGTCTA+AGG | 0.299120 | 1_3:-17219175 | None:intergenic |
| TTGAATTTGTCATGTAAATT+CGG | 0.311912 | 1_3:-17221043 | None:intergenic |
| CACATATTCCATATCTTCTT+CGG | 0.325520 | 1_3:-17220863 | None:intergenic |
| TTAATACCTTGAAACTGCTT+TGG | 0.331338 | 1_3:-17220619 | None:intergenic |
| AAAAGACATAATATATTTAG+TGG | 0.334344 | 1_3:+17221201 | Msa0107220:CDS |
| TTCCTTTGTGGCTGGGATAA+TGG | 0.345212 | 1_3:-17220590 | None:intergenic |
| GGTCTGAGTTCAAAATGAAT+TGG | 0.350012 | 1_3:+17219192 | Msa0107220:CDS |
| TATAATGAACATCTCGACTA+TGG | 0.355043 | 1_3:+17221276 | Msa0107220:CDS |
| CTTTGGGCATGGTTCCTTTG+TGG | 0.363966 | 1_3:-17220602 | None:intergenic |
| TAATACCTTGAAACTGCTTT+GGG | 0.373065 | 1_3:-17220618 | None:intergenic |
| AATCTGACCCTCCTTTGTAT+TGG | 0.385935 | 1_3:-17219295 | None:intergenic |
| GACAATGCCCGAAGAAGATA+TGG | 0.389565 | 1_3:+17220855 | Msa0107220:CDS |
| TAATATATTTAGTGGAAATT+CGG | 0.396970 | 1_3:+17221209 | Msa0107220:CDS |
| GGCATGGTTCCTTTGTGGCT+GGG | 0.407207 | 1_3:-17220597 | None:intergenic |
| ATGATGTTTGGCTTCAGAAT+TGG | 0.437267 | 1_3:+17219228 | Msa0107220:CDS |
| GCCTTAAAACACAAGGTCTC+AGG | 0.437600 | 1_3:+17220917 | Msa0107220:CDS |
| AAGGAACATGACTTAAAAGT+TGG | 0.442738 | 1_3:+17220514 | Msa0107220:CDS |
| CTAGTTCTTGGTCTTGAAGC+TGG | 0.445722 | 1_3:-17218244 | None:intergenic |
| GTCTGAGTTCAAAATGAATT+GGG | 0.455385 | 1_3:+17219193 | Msa0107220:CDS |
| GAATTTACATGACAAATTCA+AGG | 0.456040 | 1_3:+17221045 | Msa0107220:CDS |
| GTAATATCATTCAAAATCTC+AGG | 0.459755 | 1_3:-17226162 | None:intergenic |
| TTGAAGCTGGCGAAGTTGAA+TGG | 0.463192 | 1_3:-17218231 | None:intergenic |
| TACAACGAGGTGATGATGTT+TGG | 0.463515 | 1_3:+17219216 | Msa0107220:CDS |
| ATTCGGTGGAGTTGAAAGTA+GGG | 0.471281 | 1_3:+17221226 | Msa0107220:CDS |
| ACATATTCCATATCTTCTTC+GGG | 0.475083 | 1_3:-17220862 | None:intergenic |
| CGAAGAAGATATGGAATATG+TGG | 0.478018 | 1_3:+17220864 | Msa0107220:CDS |
| TTAGAAGTGTTGATGAGGAC+AGG | 0.485676 | 1_3:+17220416 | Msa0107220:CDS |
| TTTGGAAGTCTAAGGGATGT+TGG | 0.490503 | 1_3:-17219167 | None:intergenic |
| AGTGAAACTAGGATTCTCAT+TGG | 0.490637 | 1_3:-17219909 | None:intergenic |
| TCAATGTCAAGTGTTCACTA+TGG | 0.491973 | 1_3:+17218170 | None:intergenic |
| TGAAAGTAGGGGAAGGAACA+TGG | 0.498346 | 1_3:+17221238 | Msa0107220:CDS |
| CCTTGAAACTGCTTTGGGCA+TGG | 0.499094 | 1_3:-17220613 | None:intergenic |
| AATTCGGTGGAGTTGAAAGT+AGG | 0.502201 | 1_3:+17221225 | Msa0107220:CDS |
| TTGTCAATGTTTGTCCCTTG+AGG | 0.507957 | 1_3:-17219527 | None:intergenic |
| AAGGAAATTCGTAGAGACAT+TGG | 0.511665 | 1_3:+17219129 | Msa0107220:intron |
| AGAGATTGCAAAGTAAAGAC+TGG | 0.513081 | 1_3:+17221330 | Msa0107220:CDS |
| TGAATTAGAAAAGGTTTGCA+TGG | 0.513244 | 1_3:+17225965 | Msa0107220:intron |
| ACATCCCTTAGACTTCCAAA+TGG | 0.515725 | 1_3:+17219170 | Msa0107220:CDS |
| ATGGCCTTCAACATGAGATC+GGG | 0.518094 | 1_3:-17219942 | None:intergenic |
| GCTGGCGAAGTTGAATGGTT+TGG | 0.518589 | 1_3:-17218226 | None:intergenic |
| TGGACGTGGGAGTGAAGCTA+AGG | 0.519368 | 1_3:+17218190 | Msa0107220:CDS |
| TGTGCAAAATCATGTGTTCA+AGG | 0.521657 | 1_3:+17221380 | Msa0107220:CDS |
| ACTGTTGCTGCTACACCTCA+AGG | 0.523151 | 1_3:+17219512 | Msa0107220:CDS |
| ATGGTAATTGTGAATGAAAG+TGG | 0.526717 | 1_3:-17220571 | None:intergenic |
| CCATGCCCAAAGCAGTTTCA+AGG | 0.526984 | 1_3:+17220613 | Msa0107220:CDS |
| GTGAAACTAGGATTCTCATT+GGG | 0.534567 | 1_3:-17219908 | None:intergenic |
| GACTATGGATGGTTCACTAA+AGG | 0.536976 | 1_3:+17221291 | Msa0107220:CDS |
| TATGGCCTTCAACATGAGAT+CGG | 0.541774 | 1_3:-17219943 | None:intergenic |
| TACATGAATGAGTTATTGCA+AGG | 0.543984 | 1_3:+17220382 | Msa0107220:CDS |
| TATATTTAGTGGAAATTCGG+TGG | 0.544355 | 1_3:+17221212 | Msa0107220:CDS |
| CAATGATGAACAAGAAGCTA+AGG | 0.548779 | 1_3:+17219376 | Msa0107220:CDS |
| CATCCCTTAGACTTCCAAAT+GGG | 0.555762 | 1_3:+17219171 | Msa0107220:CDS |
| TATTCGTTTGAAAACCATGT+AGG | 0.557476 | 1_3:-17220361 | None:intergenic |
| ATGGATGGTTCACTAAAGGC+TGG | 0.558556 | 1_3:+17221295 | Msa0107220:CDS |
| TTTGGCTTCAGAATTGGAAG+AGG | 0.559399 | 1_3:+17219234 | Msa0107220:CDS |
| GATAATTTGAGAGTGAAACT+AGG | 0.566910 | 1_3:-17219920 | None:intergenic |
| ATGAACATCTCGACTATGGA+TGG | 0.566956 | 1_3:+17221280 | Msa0107220:CDS |
| TCAAGTGTTCACTATGGACG+TGG | 0.567496 | 1_3:+17218176 | Msa0107220:CDS |
| TGAAACAGAGGCTACCTACA+TGG | 0.580260 | 1_3:+17220347 | Msa0107220:intron |
| AACAATTAGAAGTGTTGATG+AGG | 0.583313 | 1_3:+17220411 | Msa0107220:CDS |
| TTTGCGCGCTCTCTCAGATG+TGG | 0.586381 | 1_3:+17219257 | Msa0107220:CDS |
| AGACCCATTTGGAAGTCTAA+GGG | 0.608527 | 1_3:-17219174 | None:intergenic |
| AATAGAGACAGAGGAGGCCG+CGG | 0.610798 | 1_3:+17219821 | Msa0107220:intron |
| GCAGAGGCTAATAGAGACAG+AGG | 0.621169 | 1_3:+17219812 | Msa0107220:intron |
| TGTGTTGAGGTTCTGAATGA+CGG | 0.625237 | 1_3:+17219434 | Msa0107220:CDS |
| CAATGATTATGATTGTGTTG+AGG | 0.625578 | 1_3:+17219421 | Msa0107220:CDS |
| GGAAGGAACATGGTTTGTAG+AGG | 0.629163 | 1_3:+17221248 | Msa0107220:CDS |
| GAAGAAGATATGGAATATGT+GGG | 0.632888 | 1_3:+17220865 | Msa0107220:CDS |
| TTCGGTGGAGTTGAAAGTAG+GGG | 0.634551 | 1_3:+17221227 | Msa0107220:CDS |
| GGACGTGGGAGTGAAGCTAA+GGG | 0.640577 | 1_3:+17218191 | Msa0107220:CDS |
| CTGTTGCTGCTACACCTCAA+GGG | 0.643334 | 1_3:+17219513 | Msa0107220:CDS |
| GAATGAGTTATTGCAAGGGA+AGG | 0.643476 | 1_3:+17220387 | Msa0107220:CDS |
| GTGGAGTTGAAAGTAGGGGA+AGG | 0.644645 | 1_3:+17221231 | Msa0107220:CDS |
| TAGAAGTGTTGATGAGGACA+GGG | 0.646868 | 1_3:+17220417 | Msa0107220:CDS |
| ATTTCTTAGCTTTCTTACCG+CGG | 0.652512 | 1_3:-17219838 | None:intergenic |
| TACCATTATCCCAGCCACAA+AGG | 0.660933 | 1_3:+17220588 | Msa0107220:CDS |
| ACATGAATGAGTTATTGCAA+GGG | 0.661417 | 1_3:+17220383 | Msa0107220:CDS |
| AACAGCTGCCTTAAAACACA+AGG | 0.666453 | 1_3:+17220910 | Msa0107220:CDS |
| GTGTTGATGAGGACAGGGCA+CGG | 0.684939 | 1_3:+17220422 | Msa0107220:CDS |
| CAAGTGTTCACTATGGACGT+GGG | 0.700697 | 1_3:+17218177 | Msa0107220:CDS |
| GAGGCTAATAGAGACAGAGG+AGG | 0.708768 | 1_3:+17219815 | Msa0107220:intron |
| AAAATGAATTGGGTACAACG+AGG | 0.756191 | 1_3:+17219203 | Msa0107220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAAATAAAAATAAA+AGG | + | chr1_3:17221924-17221943 | Msa0107220:intron | 0.0% |
| !! | AAAAATAAATAAAAATAAAA+GGG | + | chr1_3:17221925-17221944 | Msa0107220:intron | 0.0% |
| !! | TAATAATAATAATAATAATA+AGG | - | chr1_3:17225321-17225340 | None:intergenic | 0.0% |
| !!! | TTGTTGTTATTATTATTATT+TGG | + | chr1_3:17224722-17224741 | Msa0107220:intron | 10.0% |
| !!! | GGTTTTTTTATTTAAATTTA+TGG | + | chr1_3:17224962-17224981 | Msa0107220:intron | 10.0% |
| !!! | AAATATTATTTTAGATACAA+TGG | + | chr1_3:17225923-17225942 | Msa0107220:intron | 10.0% |
| !! | ATACAGAAAGATATAAATTA+TGG | + | chr1_3:17218500-17218519 | Msa0107220:intron | 15.0% |
| !!! | TATGGTTTTATTATCATTAA+TGG | + | chr1_3:17218518-17218537 | Msa0107220:intron | 15.0% |
| !! | TTATTATCATTAATGGAATT+TGG | + | chr1_3:17218525-17218544 | Msa0107220:intron | 15.0% |
| !! | AATTCATGAAATTAAATTCA+TGG | + | chr1_3:17218781-17218800 | Msa0107220:intron | 15.0% |
| !! | AGAAAAAACATAAATAAAGT+GGG | - | chr1_3:17219684-17219703 | None:intergenic | 15.0% |
| !! | AAGAAAAAACATAAATAAAG+TGG | - | chr1_3:17219685-17219704 | None:intergenic | 15.0% |
| !! | CTTGAAAAATAAAATTAAGA+TGG | - | chr1_3:17220948-17220967 | None:intergenic | 15.0% |
| !! | AAAAGACATAATATATTTAG+TGG | + | chr1_3:17221201-17221220 | Msa0107220:CDS | 15.0% |
| !! | TAATATATTTAGTGGAAATT+CGG | + | chr1_3:17221209-17221228 | Msa0107220:CDS | 15.0% |
| !! | TTAACATATTTATGAATATC+AGG | + | chr1_3:17222084-17222103 | Msa0107220:intron | 15.0% |
| !!! | TTTTTTTTATTGTTGTTGTT+GGG | - | chr1_3:17222231-17222250 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTATTGTTGTTGT+TGG | - | chr1_3:17222232-17222251 | None:intergenic | 15.0% |
| !!! | ATATTCCATTTTTACATAAT+GGG | - | chr1_3:17222718-17222737 | None:intergenic | 15.0% |
| !!! | TCAAATTTTGTTGATATATA+AGG | - | chr1_3:17223141-17223160 | None:intergenic | 15.0% |
| !!! | TTAAATTTTTAGAACTTCAT+TGG | - | chr1_3:17223182-17223201 | None:intergenic | 15.0% |
| !!! | TTTTTAATATTAAAAGAGTG+AGG | - | chr1_3:17223646-17223665 | None:intergenic | 15.0% |
| !! | TTCACAAAAATTTCTTAAAT+GGG | - | chr1_3:17223714-17223733 | None:intergenic | 15.0% |
| !! | TTTCACAAAAATTTCTTAAA+TGG | - | chr1_3:17223715-17223734 | None:intergenic | 15.0% |
| !! | AAAATCATACTACTTTAATT+TGG | + | chr1_3:17223927-17223946 | Msa0107220:intron | 15.0% |
| !!! | AAATCATACTACTTTAATTT+GGG | + | chr1_3:17223928-17223947 | Msa0107220:intron | 15.0% |
| !! | TGAAATGATAATAAATAAGT+AGG | - | chr1_3:17224096-17224115 | None:intergenic | 15.0% |
| !!! | AATTGAGATAATAGTTATTT+TGG | - | chr1_3:17224253-17224272 | None:intergenic | 15.0% |
| !! | ATAAGAAATTCTATTCAAAA+TGG | - | chr1_3:17224617-17224636 | None:intergenic | 15.0% |
| !! | ATAAATAAGATAAAAAACCA+TGG | - | chr1_3:17224761-17224780 | None:intergenic | 15.0% |
| !! | TTAATTAAAAAACATTGATG+AGG | + | chr1_3:17224879-17224898 | Msa0107220:intron | 15.0% |
| !!! | TTATGACTAATTTTTTGATA+TGG | + | chr1_3:17225534-17225553 | Msa0107220:intron | 15.0% |
| !!! | TATGACTAATTTTTTGATAT+GGG | + | chr1_3:17225535-17225554 | Msa0107220:intron | 15.0% |
| !! | TCATTTAATAATGAAAAACA+AGG | - | chr1_3:17225662-17225681 | None:intergenic | 15.0% |
| !!! | TTTGAAATTTTTAGAGATAT+TGG | - | chr1_3:17225889-17225908 | None:intergenic | 15.0% |
| !!! | CTTTTAGTTTTTCAATATAA+AGG | + | chr1_3:17226006-17226025 | Msa0107220:CDS | 15.0% |
| !! | ATCAAAAGAATGAATGAAAA+CGG | - | chr1_3:17218300-17218319 | None:intergenic | 20.0% |
| !!! | TCCTTTTGAATTATCATAAA+TGG | + | chr1_3:17218465-17218484 | Msa0107220:intron | 20.0% |
| !! | TCCATTTATGATAATTCAAA+AGG | - | chr1_3:17218469-17218488 | None:intergenic | 20.0% |
| !! | TTGATTGTTAGAAACTAAAA+CGG | + | chr1_3:17219009-17219028 | Msa0107220:intron | 20.0% |
| !!! | AGATTTTCATGTCATTATAT+TGG | + | chr1_3:17219313-17219332 | Msa0107220:intron | 20.0% |
| !! | AAAAAGAAAATCAACTCAAA+TGG | + | chr1_3:17219482-17219501 | Msa0107220:CDS | 20.0% |
| !! | TAAAAACATGTACATTTGTA+TGG | - | chr1_3:17219653-17219672 | None:intergenic | 20.0% |
| !! | TATTAACAAGAGAAACATTT+GGG | - | chr1_3:17220083-17220102 | None:intergenic | 20.0% |
| !! | AGTTTGATACATTTAAATAC+TGG | + | chr1_3:17220252-17220271 | Msa0107220:intron | 20.0% |
| !! | TTGAATTTGTCATGTAAATT+CGG | - | chr1_3:17221046-17221065 | None:intergenic | 20.0% |
| !! | TTTCTTTCATTTAAACCAAT+GGG | - | chr1_3:17221519-17221538 | None:intergenic | 20.0% |
| !! | AAGTTGAAGAAAAAGAATAT+AGG | + | chr1_3:17221562-17221581 | Msa0107220:intron | 20.0% |
| !! | AAAGAAAGAATCTTGAAAAA+AGG | - | chr1_3:17221872-17221891 | None:intergenic | 20.0% |
| !!! | ACAATTCTAAGATGATAAAT+TGG | - | chr1_3:17222603-17222622 | None:intergenic | 20.0% |
| !!! | CATATTCCATTTTTACATAA+TGG | - | chr1_3:17222719-17222738 | None:intergenic | 20.0% |
| !! | CATTATGTAAAAATGGAATA+TGG | + | chr1_3:17222717-17222736 | Msa0107220:intron | 20.0% |
| !!! | TAGTATTGTCATTTCAAATA+TGG | - | chr1_3:17222855-17222874 | None:intergenic | 20.0% |
| !!! | AAGAAATTTTTGTGAAATGT+TGG | + | chr1_3:17223718-17223737 | Msa0107220:intron | 20.0% |
| !!! | AGAAATTTTTGTGAAATGTT+GGG | + | chr1_3:17223719-17223738 | Msa0107220:intron | 20.0% |
| !! | TCAAAATGGAAAAAATGAAT+AGG | - | chr1_3:17224603-17224622 | None:intergenic | 20.0% |
| !!! | TCATTGTTATTTTTCCTAAT+AGG | - | chr1_3:17224647-17224666 | None:intergenic | 20.0% |
| !! | AAGAAATATAAAAGACTCAA+AGG | - | chr1_3:17224794-17224813 | None:intergenic | 20.0% |
| !! | GTTAATAAAAAATTGACGAA+AGG | + | chr1_3:17225139-17225158 | Msa0107220:intron | 20.0% |
| !! | TAGATTTAAAAACTTACTGT+TGG | + | chr1_3:17225493-17225512 | Msa0107220:intron | 20.0% |
| !!! | TTAGTGTCAAAATTTTTAAG+TGG | - | chr1_3:17225757-17225776 | None:intergenic | 20.0% |
| !! | TTTGTAGAGAAATATTGAAA+AGG | + | chr1_3:17225853-17225872 | Msa0107220:intron | 20.0% |
| !!! | CTAAAATAATATTTTGCACT+CGG | - | chr1_3:17225917-17225936 | None:intergenic | 20.0% |
| !!! | TTTGTCTTTTGAATTAGAAA+AGG | + | chr1_3:17225956-17225975 | Msa0107220:intron | 20.0% |
| !!! | TTAGTTTTTCAATATAAAGG+AGG | + | chr1_3:17226009-17226028 | Msa0107220:CDS | 20.0% |
| !!! | TAGTTTTTCAATATAAAGGA+GGG | + | chr1_3:17226010-17226029 | Msa0107220:CDS | 20.0% |
| ! | GCTGTAAATAATGAATGAAA+AGG | - | chr1_3:17218398-17218417 | None:intergenic | 25.0% |
| ! | TCATGAAATTAAATTCATGG+AGG | + | chr1_3:17218784-17218803 | Msa0107220:intron | 25.0% |
| ! | TTTGTGAAATCTGAACTAAT+TGG | - | chr1_3:17218864-17218883 | None:intergenic | 25.0% |
| ! | CGTTACTAATTGAAATTCAT+TGG | + | chr1_3:17219077-17219096 | Msa0107220:intron | 25.0% |
| ! | TATATTGGATGATAGTAGTT+TGG | + | chr1_3:17219328-17219347 | Msa0107220:intron | 25.0% |
| !! | TTGATTTTCTTTTTCTTGAG+GGG | - | chr1_3:17219476-17219495 | None:intergenic | 25.0% |
| !!! | GTTGATTTTCTTTTTCTTGA+GGG | - | chr1_3:17219477-17219496 | None:intergenic | 25.0% |
| !!! | AGTTGATTTTCTTTTTCTTG+AGG | - | chr1_3:17219478-17219497 | None:intergenic | 25.0% |
| !! | CATTTGTATGGATTAAAAAG+TGG | - | chr1_3:17219641-17219660 | None:intergenic | 25.0% |
| !!! | AAATGTACATGTTTTTAGTC+CGG | + | chr1_3:17219656-17219675 | Msa0107220:intron | 25.0% |
| ! | AAATGCACAAAAACTAAACA+TGG | + | chr1_3:17219857-17219876 | Msa0107220:CDS | 25.0% |
| ! | AATGCACAAAAACTAAACAT+GGG | + | chr1_3:17219858-17219877 | Msa0107220:CDS | 25.0% |
| !! | ATCATGGGAAAAAAAAGTAT+AGG | - | chr1_3:17219982-17220001 | None:intergenic | 25.0% |
| !! | AGAGACTTTCATTTTACTAT+AGG | + | chr1_3:17220027-17220046 | Msa0107220:intron | 25.0% |
| ! | ATTAACAAGAGAAACATTTG+GGG | - | chr1_3:17220082-17220101 | None:intergenic | 25.0% |
| ! | CTATTAACAAGAGAAACATT+TGG | - | chr1_3:17220084-17220103 | None:intergenic | 25.0% |
| ! | ACTAACAGAAAACATATTCA+AGG | + | chr1_3:17220121-17220140 | Msa0107220:intron | 25.0% |
| !! | TTGATTTTCAAATGTGTCTT+TGG | - | chr1_3:17220194-17220213 | None:intergenic | 25.0% |
| ! | TTAACTATATGTAATGTGCA+TGG | - | chr1_3:17220288-17220307 | None:intergenic | 25.0% |
| ! | AGTAGTATGTTTACATTACA+TGG | - | chr1_3:17220769-17220788 | None:intergenic | 25.0% |
| ! | AGAACAAAGAAAACAGTTTA+AGG | - | chr1_3:17221000-17221019 | None:intergenic | 25.0% |
| ! | GAATTTACATGACAAATTCA+AGG | + | chr1_3:17221045-17221064 | Msa0107220:CDS | 25.0% |
| ! | TTTGTTCTTATATATGCAGT+TGG | + | chr1_3:17221155-17221174 | Msa0107220:intron | 25.0% |
| ! | TTATGTTAAACCCCTTAAAA+TGG | - | chr1_3:17221443-17221462 | None:intergenic | 25.0% |
| ! | CTTTCTTTCATTTAAACCAA+TGG | - | chr1_3:17221520-17221539 | None:intergenic | 25.0% |
| !!! | CATTGGTTTAAATGAAAGAA+AGG | + | chr1_3:17221518-17221537 | Msa0107220:intron | 25.0% |
| ! | GTTTAAATGAAAGAAAGGTT+CGG | + | chr1_3:17221523-17221542 | Msa0107220:intron | 25.0% |
| ! | AAGAATATAGGAAAATCAGA+AGG | + | chr1_3:17221574-17221593 | Msa0107220:intron | 25.0% |
| ! | GTTGAAGAATCTTTGATTAA+AGG | - | chr1_3:17221658-17221677 | None:intergenic | 25.0% |
| ! | TTACTTTACTGTTAATGTTG+TGG | - | chr1_3:17221680-17221699 | None:intergenic | 25.0% |
| !!! | ATTCTCAAACACTATTTTAG+AGG | - | chr1_3:17221722-17221741 | None:intergenic | 25.0% |
| ! | TAGTGTTAAAATAGCTACTA+TGG | + | chr1_3:17221820-17221839 | Msa0107220:intron | 25.0% |
| ! | TTAAAATAGCTACTATGGAA+TGG | + | chr1_3:17221825-17221844 | Msa0107220:intron | 25.0% |
| !!! | AGTAGTTTTCAATTTTTCAG+AGG | - | chr1_3:17221995-17222014 | None:intergenic | 25.0% |
| ! | ATCAAGGTTTCTATGTTAAA+TGG | - | chr1_3:17222311-17222330 | None:intergenic | 25.0% |
| ! | TTTAACATAGAAACCTTGAT+TGG | + | chr1_3:17222311-17222330 | Msa0107220:intron | 25.0% |
| ! | ATGTGGTTATCATATTAACT+TGG | + | chr1_3:17222540-17222559 | Msa0107220:intron | 25.0% |
| !! | CTAGTCTTCTATATTTATAG+AGG | + | chr1_3:17222681-17222700 | Msa0107220:intron | 25.0% |
| ! | TAGTCTATTTGAATTTGAAG+TGG | + | chr1_3:17223219-17223238 | Msa0107220:intron | 25.0% |
| ! | AAAACAGAAAAGAGAAAAGA+TGG | - | chr1_3:17223421-17223440 | None:intergenic | 25.0% |
| ! | TCTTCTTCAAGAATTTATCT+TGG | + | chr1_3:17223443-17223462 | Msa0107220:intron | 25.0% |
| !! | AGTTATTGATAGTTGATTAG+TGG | + | chr1_3:17223686-17223705 | Msa0107220:intron | 25.0% |
| ! | TTCTTATAATGCAACCTATT+AGG | + | chr1_3:17224630-17224649 | Msa0107220:intron | 25.0% |
| !! | ATGAGAAATGAAGATGTTTT+AGG | + | chr1_3:17224663-17224682 | Msa0107220:intron | 25.0% |
| !! | AAGACAGAAAGTATAAACAA+TGG | - | chr1_3:17224693-17224712 | None:intergenic | 25.0% |
| !! | TGATTTAAGACACTAAAACT+TGG | + | chr1_3:17224941-17224960 | Msa0107220:intron | 25.0% |
| !!! | AATTTTCAAGAAACAGTGTT+GGG | - | chr1_3:17225409-17225428 | None:intergenic | 25.0% |
| !!! | AATTTTTTGATATGGGAATC+AGG | + | chr1_3:17225542-17225561 | Msa0107220:intron | 25.0% |
| !!! | ATTTTTTGATATGGGAATCA+GGG | + | chr1_3:17225543-17225562 | Msa0107220:intron | 25.0% |
| ! | GTATTGTTTAGACTAAAATG+TGG | + | chr1_3:17225596-17225615 | Msa0107220:intron | 25.0% |
| ! | AAAACAAATGAGTTCGAAAT+TGG | - | chr1_3:17225829-17225848 | None:intergenic | 25.0% |
| !!! | TACGATATTTGTTAGAGTTT+TGG | - | chr1_3:17226110-17226129 | None:intergenic | 25.0% |
| ! | GTAATATCATTCAAAATCTC+AGG | - | chr1_3:17226165-17226184 | None:intergenic | 25.0% |
| !! | TTGTCAATATTTGTCTTTTG+AGG | - | chr1_3:17226204-17226223 | None:intergenic | 25.0% |
| ! | AGAGAATGATTACTAGTTCT+TGG | - | chr1_3:17218259-17218278 | None:intergenic | 30.0% |
| AGAATGAATGAAAACGGAAA+AGG | - | chr1_3:17218294-17218313 | None:intergenic | 30.0% | |
| CATATGCTTGACTTAAAATG+TGG | + | chr1_3:17218944-17218963 | Msa0107220:intron | 30.0% | |
| GTCTGAGTTCAAAATGAATT+GGG | + | chr1_3:17219193-17219212 | Msa0107220:CDS | 30.0% | |
| ! | CTTGTAGTTTTCCAATACAA+AGG | + | chr1_3:17219284-17219303 | Msa0107220:CDS | 30.0% |
| ! | TAGTTTTCCAATACAAAGGA+GGG | + | chr1_3:17219288-17219307 | Msa0107220:CDS | 30.0% |
| CAATGATTATGATTGTGTTG+AGG | + | chr1_3:17219421-17219440 | Msa0107220:CDS | 30.0% | |
| !!! | AATGTACATGTTTTTAGTCC+GGG | + | chr1_3:17219657-17219676 | Msa0107220:intron | 30.0% |
| !!! | ATAGTTTTAACGTTTTGCAG+AGG | + | chr1_3:17219796-17219815 | Msa0107220:intron | 30.0% |
| GATAATTTGAGAGTGAAACT+AGG | - | chr1_3:17219923-17219942 | None:intergenic | 30.0% | |
| ATAGGAAACATACCAATCTA+TGG | - | chr1_3:17219964-17219983 | None:intergenic | 30.0% | |
| GGTACAAAAATCACTATCAT+GGG | - | chr1_3:17219997-17220016 | None:intergenic | 30.0% | |
| AGGTACAAAAATCACTATCA+TGG | - | chr1_3:17219998-17220017 | None:intergenic | 30.0% | |
| TTAACAAGAGAAACATTTGG+GGG | - | chr1_3:17220081-17220100 | None:intergenic | 30.0% | |
| AGCTAACAATAGAGACATTT+AGG | + | chr1_3:17220217-17220236 | Msa0107220:intron | 30.0% | |
| TATTCGTTTGAAAACCATGT+AGG | - | chr1_3:17220364-17220383 | None:intergenic | 30.0% | |
| TACATGAATGAGTTATTGCA+AGG | + | chr1_3:17220382-17220401 | Msa0107220:CDS | 30.0% | |
| ACATGAATGAGTTATTGCAA+GGG | + | chr1_3:17220383-17220402 | Msa0107220:CDS | 30.0% | |
| !! | AACAATTAGAAGTGTTGATG+AGG | + | chr1_3:17220411-17220430 | Msa0107220:CDS | 30.0% |
| !!! | CAATGACAGTTTTTTAATGC+AGG | + | chr1_3:17220471-17220490 | Msa0107220:intron | 30.0% |
| AAGGAACATGACTTAAAAGT+TGG | + | chr1_3:17220514-17220533 | Msa0107220:CDS | 30.0% | |
| ATGGTAATTGTGAATGAAAG+TGG | - | chr1_3:17220574-17220593 | None:intergenic | 30.0% | |
| TAATACCTTGAAACTGCTTT+GGG | - | chr1_3:17220621-17220640 | None:intergenic | 30.0% | |
| TTAATACCTTGAAACTGCTT+TGG | - | chr1_3:17220622-17220641 | None:intergenic | 30.0% | |
| !! | CTGATTTTATTTGCACTTGT+TGG | - | chr1_3:17220834-17220853 | None:intergenic | 30.0% |
| ACATATTCCATATCTTCTTC+GGG | - | chr1_3:17220865-17220884 | None:intergenic | 30.0% | |
| CACATATTCCATATCTTCTT+CGG | - | chr1_3:17220866-17220885 | None:intergenic | 30.0% | |
| GAAGAAGATATGGAATATGT+GGG | + | chr1_3:17220865-17220884 | Msa0107220:CDS | 30.0% | |
| ! | TTTTGTGACATCATTAGACA+AGG | + | chr1_3:17221069-17221088 | Msa0107220:CDS | 30.0% |
| TATATTTAGTGGAAATTCGG+TGG | + | chr1_3:17221212-17221231 | Msa0107220:CDS | 30.0% | |
| TATAATGAACATCTCGACTA+TGG | + | chr1_3:17221276-17221295 | Msa0107220:CDS | 30.0% | |
| TATTCTCTAATTGTGAGACT+CGG | + | chr1_3:17221471-17221490 | Msa0107220:intron | 30.0% | |
| !! | GATTTTCTTAACCTTTAGGA+AGG | - | chr1_3:17221962-17221981 | None:intergenic | 30.0% |
| TCCTAAAGGTTAAGAAAATC+AGG | + | chr1_3:17221962-17221981 | Msa0107220:intron | 30.0% | |
| TTATGAATATCAGGTCAACA+TGG | + | chr1_3:17222093-17222112 | Msa0107220:intron | 30.0% | |
| !!! | TTGCTTCTGTGATTTTAACT+AGG | - | chr1_3:17222195-17222214 | None:intergenic | 30.0% |
| !! | AAAAGTATCAGCATGATGTA+TGG | + | chr1_3:17222269-17222288 | Msa0107220:intron | 30.0% |
| ATATCGTATGGAACAAAGAA+TGG | + | chr1_3:17222451-17222470 | Msa0107220:intron | 30.0% | |
| AAAAACTGAAGTGAGATTTG+TGG | + | chr1_3:17222516-17222535 | Msa0107220:intron | 30.0% | |
| ! | ATCATATTAACTTGGCAAGA+TGG | + | chr1_3:17222548-17222567 | Msa0107220:intron | 30.0% |
| TAGAGCCCATTATGTAAAAA+TGG | + | chr1_3:17222710-17222729 | Msa0107220:intron | 30.0% | |
| TGATTGGCATTTACAATACA+AGG | - | chr1_3:17222881-17222900 | None:intergenic | 30.0% | |
| TGTATTGTAAATGCCAATCA+TGG | + | chr1_3:17222881-17222900 | Msa0107220:intron | 30.0% | |
| TGCATTCTAATTACCATGAT+TGG | - | chr1_3:17222897-17222916 | None:intergenic | 30.0% | |
| TCATGGTAATTAGAATGCAT+AGG | + | chr1_3:17222898-17222917 | Msa0107220:intron | 30.0% | |
| AATGCATAGGACACATATAT+TGG | + | chr1_3:17222911-17222930 | Msa0107220:intron | 30.0% | |
| AAAAGTTATACCACATCAGA+TGG | - | chr1_3:17223009-17223028 | None:intergenic | 30.0% | |
| ! | GTGGTATAACTTTTCTAATC+AGG | + | chr1_3:17223015-17223034 | Msa0107220:intron | 30.0% |
| ! | GTATAACTTTTCTAATCAGG+TGG | + | chr1_3:17223018-17223037 | Msa0107220:intron | 30.0% |
| AAAATGAATCACGACTTCAT+GGG | + | chr1_3:17223255-17223274 | Msa0107220:intron | 30.0% | |
| GAATTTATCTTGGTTAGTGT+TGG | + | chr1_3:17223453-17223472 | Msa0107220:intron | 30.0% | |
| ATTGAATGTGACCAATACAA+TGG | + | chr1_3:17223507-17223526 | Msa0107220:intron | 30.0% | |
| ! | ATTTTTGTGAAATGTTGGGT+TGG | + | chr1_3:17223723-17223742 | Msa0107220:intron | 30.0% |
| !!! | TCCATTTTTGGGTTCTTAAA+CGG | - | chr1_3:17223816-17223835 | None:intergenic | 30.0% |
| AAGTAGGAGTAATTCTTAGA+TGG | - | chr1_3:17223862-17223881 | None:intergenic | 30.0% | |
| TCATTAGTCAAAATAGTCAG+TGG | + | chr1_3:17224013-17224032 | Msa0107220:intron | 30.0% | |
| TTGAAGCTAGAAACATCATA+GGG | - | chr1_3:17224388-17224407 | None:intergenic | 30.0% | |
| ! | TTTGAAGCTAGAAACATCAT+AGG | - | chr1_3:17224389-17224408 | None:intergenic | 30.0% |
| !! | TGTCATATTGCTTTTCAGAA+CGG | + | chr1_3:17224411-17224430 | Msa0107220:intron | 30.0% |
| ! | TGTAATAACTTGTAAAGAGC+TGG | + | chr1_3:17224437-17224456 | Msa0107220:intron | 30.0% |
| ! | GCTTTTTGTGAAGATGAAAA+TGG | - | chr1_3:17224477-17224496 | None:intergenic | 30.0% |
| TTTGATAGAATGGTGAAGAA+TGG | - | chr1_3:17224517-17224536 | None:intergenic | 30.0% | |
| AGTTGAATGGTTTGATAGAA+TGG | - | chr1_3:17224527-17224546 | None:intergenic | 30.0% | |
| CTAACCACCTATGATTATAA+GGG | + | chr1_3:17224902-17224921 | Msa0107220:intron | 30.0% | |
| ACAGTAACCCTTATAATCAT+AGG | - | chr1_3:17224912-17224931 | None:intergenic | 30.0% | |
| !! | ATTTTCAAGAAACAGTGTTG+GGG | - | chr1_3:17225408-17225427 | None:intergenic | 30.0% |
| !! | GAATTTTCAAGAAACAGTGT+TGG | - | chr1_3:17225410-17225429 | None:intergenic | 30.0% |
| TTTCTTGAAAATTCCACTAC+CGG | + | chr1_3:17225416-17225435 | Msa0107220:intron | 30.0% | |
| ATGATTATCTAATCACATGC+TGG | - | chr1_3:17225451-17225470 | None:intergenic | 30.0% | |
| TAGAGAGAACCAAAAAACAT+TGG | - | chr1_3:17225573-17225592 | None:intergenic | 30.0% | |
| TGAATTAGAAAAGGTTTGCA+TGG | + | chr1_3:17225965-17225984 | Msa0107220:intron | 30.0% | |
| !! | CTCTTTAAGTGGACTGTTTA+AGG | + | chr1_3:17218622-17218641 | Msa0107220:intron | 35.0% |
| CATCACGAAAACTGTATTGA+GGG | - | chr1_3:17218673-17218692 | None:intergenic | 35.0% | |
| AATGTCTCTACGAATTTCCT+TGG | - | chr1_3:17219130-17219149 | None:intergenic | 35.0% | |
| AAGGAAATTCGTAGAGACAT+TGG | + | chr1_3:17219129-17219148 | Msa0107220:intron | 35.0% | |
| ! | ATTTTGAACTCAGACCCATT+TGG | - | chr1_3:17219188-17219207 | None:intergenic | 35.0% |
| GGTCTGAGTTCAAAATGAAT+TGG | + | chr1_3:17219192-17219211 | Msa0107220:CDS | 35.0% | |
| AAAATGAATTGGGTACAACG+AGG | + | chr1_3:17219203-17219222 | Msa0107220:CDS | 35.0% | |
| ! | ATGATGTTTGGCTTCAGAAT+TGG | + | chr1_3:17219228-17219247 | Msa0107220:CDS | 35.0% |
| ! | GTAGTTTTCCAATACAAAGG+AGG | + | chr1_3:17219287-17219306 | Msa0107220:CDS | 35.0% |
| CAATGATGAACAAGAAGCTA+AGG | + | chr1_3:17219376-17219395 | Msa0107220:CDS | 35.0% | |
| !!! | CTTGCCTGAAATTTTTTGCA+GGG | - | chr1_3:17219576-17219595 | None:intergenic | 35.0% |
| !!! | ACTTGCCTGAAATTTTTTGC+AGG | - | chr1_3:17219577-17219596 | None:intergenic | 35.0% |
| AACATAAATAAAGTGGGTCC+CGG | - | chr1_3:17219678-17219697 | None:intergenic | 35.0% | |
| ! | ATTTCTTAGCTTTCTTACCG+CGG | - | chr1_3:17219841-17219860 | None:intergenic | 35.0% |
| GTGAAACTAGGATTCTCATT+GGG | - | chr1_3:17219911-17219930 | None:intergenic | 35.0% | |
| AGTGAAACTAGGATTCTCAT+TGG | - | chr1_3:17219912-17219931 | None:intergenic | 35.0% | |
| TGAAAGTCTCTCACACATTT+AGG | - | chr1_3:17220018-17220037 | None:intergenic | 35.0% | |
| TAAATCATGACCTGAAACAG+AGG | + | chr1_3:17220335-17220354 | Msa0107220:intron | 35.0% | |
| !!! | GACAGTTTTTTAATGCAGGT+TGG | + | chr1_3:17220475-17220494 | Msa0107220:intron | 35.0% |
| !!! | GTTTTTTAATGCAGGTTGGT+TGG | + | chr1_3:17220479-17220498 | Msa0107220:intron | 35.0% |
| !! | TGGTTGGAAGTCATTTTCAA+AGG | + | chr1_3:17220495-17220514 | Msa0107220:CDS | 35.0% |
| CGAAGAAGATATGGAATATG+TGG | + | chr1_3:17220864-17220883 | Msa0107220:CDS | 35.0% | |
| ! | ATGGAATATGTGGGCAATTT+TGG | + | chr1_3:17220874-17220893 | Msa0107220:CDS | 35.0% |
| ! | TGTCTTTTTAACAGCTCACT+TGG | - | chr1_3:17221189-17221208 | None:intergenic | 35.0% |
| AGAGATTGCAAAGTAAAGAC+TGG | + | chr1_3:17221330-17221349 | Msa0107220:CDS | 35.0% | |
| TGTGCAAAATCATGTGTTCA+AGG | + | chr1_3:17221380-17221399 | Msa0107220:CDS | 35.0% | |
| !!! | CTTGTGTCTTGCCATTTTAA+GGG | + | chr1_3:17221429-17221448 | Msa0107220:intron | 35.0% |
| !!! | TTGTGTCTTGCCATTTTAAG+GGG | + | chr1_3:17221430-17221449 | Msa0107220:intron | 35.0% |
| TTTCTGCACTGAATCATCTT+AGG | - | chr1_3:17221756-17221775 | None:intergenic | 35.0% | |
| AGAATCTTGAAAAAAGGACG+TGG | - | chr1_3:17221866-17221885 | None:intergenic | 35.0% | |
| TCAACACATATCCTTCCTAA+AGG | + | chr1_3:17221948-17221967 | Msa0107220:intron | 35.0% | |
| ! | GCCTGATTTTCTTAACCTTT+AGG | - | chr1_3:17221966-17221985 | None:intergenic | 35.0% |
| TTTAGTACTCTAGCTGTTAG+TGG | - | chr1_3:17222057-17222076 | None:intergenic | 35.0% | |
| !!! | AGTGGCAATTTTTTACTGCA+AGG | - | chr1_3:17222122-17222141 | None:intergenic | 35.0% |
| ! | ATTGTGTTTTCAGCTCAAAG+TGG | - | chr1_3:17222140-17222159 | None:intergenic | 35.0% |
| TGCTTAAGAATCTCCAATCA+AGG | - | chr1_3:17222327-17222346 | None:intergenic | 35.0% | |
| TTGAAAGAGCTACCTTATAC+AGG | + | chr1_3:17222392-17222411 | Msa0107220:intron | 35.0% | |
| TGGAACAAAGAATGGTTACT+TGG | + | chr1_3:17222459-17222478 | Msa0107220:intron | 35.0% | |
| AACAAAGAATGGTTACTTGG+AGG | + | chr1_3:17222462-17222481 | Msa0107220:intron | 35.0% | |
| GACTAGACATGAAGAATTGT+AGG | - | chr1_3:17222667-17222686 | None:intergenic | 35.0% | |
| ! | AACCAAATATTCTGAGAGCT+TGG | + | chr1_3:17222804-17222823 | Msa0107220:intron | 35.0% |
| TTCCTCTTACTAACATGTTG+TGG | - | chr1_3:17223068-17223087 | None:intergenic | 35.0% | |
| GAAAATGAATCACGACTTCA+TGG | + | chr1_3:17223254-17223273 | Msa0107220:intron | 35.0% | |
| ! | TTGGATTTTCTCTCTCTATG+AGG | + | chr1_3:17223472-17223491 | Msa0107220:intron | 35.0% |
| AGGGTCTTAACCATTTAAGA+CGG | + | chr1_3:17223560-17223579 | Msa0107220:intron | 35.0% | |
| ! | CTAATAGGTACCGTCTTAAA+TGG | - | chr1_3:17223573-17223592 | None:intergenic | 35.0% |
| ! | CATTTAAGACGGTACCTATT+AGG | + | chr1_3:17223571-17223590 | Msa0107220:intron | 35.0% |
| TACCTATTAGGTACTCCATT+GGG | + | chr1_3:17223583-17223602 | Msa0107220:intron | 35.0% | |
| TTAAGTAAGATTCTCCCCAA+TGG | - | chr1_3:17223601-17223620 | None:intergenic | 35.0% | |
| GGAGGAATTGAGTTCTTATT+AGG | + | chr1_3:17223744-17223763 | Msa0107220:intron | 35.0% | |
| TCCGTTTAAGAACCCAAAAA+TGG | + | chr1_3:17223812-17223831 | Msa0107220:intron | 35.0% | |
| !! | CAATGGAGACATCCATTTTT+GGG | - | chr1_3:17223827-17223846 | None:intergenic | 35.0% |
| ! | ACAATGGAGACATCCATTTT+TGG | - | chr1_3:17223828-17223847 | None:intergenic | 35.0% |
| TTTCACATCACCTTAGAGTA+GGG | - | chr1_3:17223909-17223928 | None:intergenic | 35.0% | |
| ! | TTTTCACATCACCTTAGAGT+AGG | - | chr1_3:17223910-17223929 | None:intergenic | 35.0% |
| ! | CGATTTTTGAATGTAGTCGA+TGG | - | chr1_3:17224282-17224301 | None:intergenic | 35.0% |
| TAAATACACAGCCTAGCTAA+CGG | + | chr1_3:17224314-17224333 | Msa0107220:intron | 35.0% | |
| TTGGCAAAATTAGTACTCCA+TGG | + | chr1_3:17224741-17224760 | Msa0107220:intron | 35.0% | |
| GCTAACCACCTATGATTATA+AGG | + | chr1_3:17224901-17224920 | Msa0107220:intron | 35.0% | |
| GTAACCCTTATAATCATAGG+TGG | - | chr1_3:17224909-17224928 | None:intergenic | 35.0% | |
| ATCACTTGGACTCAATCACT+TGG | + | chr1_3:17218590-17218609 | Msa0107220:intron | 40.0% | |
| GGTCATAGGAACTCTTTAAG+TGG | + | chr1_3:17218611-17218630 | Msa0107220:intron | 40.0% | |
| CCATCACGAAAACTGTATTG+AGG | - | chr1_3:17218674-17218693 | None:intergenic | 40.0% | |
| ! | CCTCAATACAGTTTTCGTGA+TGG | + | chr1_3:17218671-17218690 | Msa0107220:intron | 40.0% |
| GTGCAAGAATAGAGCAAGAA+TGG | - | chr1_3:17218719-17218738 | None:intergenic | 40.0% | |
| TCATGTATTAGTGCTACGCA+TGG | + | chr1_3:17218892-17218911 | Msa0107220:intron | 40.0% | |
| TGTTCTTGCAGATGATTCCA+AGG | + | chr1_3:17219110-17219129 | Msa0107220:intron | 40.0% | |
| TTTGGAAGTCTAAGGGATGT+TGG | - | chr1_3:17219170-17219189 | None:intergenic | 40.0% | |
| ACATCCCTTAGACTTCCAAA+TGG | + | chr1_3:17219170-17219189 | Msa0107220:CDS | 40.0% | |
| CATCCCTTAGACTTCCAAAT+GGG | + | chr1_3:17219171-17219190 | Msa0107220:CDS | 40.0% | |
| AGACCCATTTGGAAGTCTAA+GGG | - | chr1_3:17219177-17219196 | None:intergenic | 40.0% | |
| ! | TACAACGAGGTGATGATGTT+TGG | + | chr1_3:17219216-17219235 | Msa0107220:CDS | 40.0% |
| ! | TTTGGCTTCAGAATTGGAAG+AGG | + | chr1_3:17219234-17219253 | Msa0107220:CDS | 40.0% |
| AATCTGACCCTCCTTTGTAT+TGG | - | chr1_3:17219298-17219317 | None:intergenic | 40.0% | |
| !! | TGTGTTGAGGTTCTGAATGA+CGG | + | chr1_3:17219434-17219453 | Msa0107220:CDS | 40.0% |
| TTGTCAATGTTTGTCCCTTG+AGG | - | chr1_3:17219530-17219549 | None:intergenic | 40.0% | |
| GCAACCCTGCAAAAAATTTC+AGG | + | chr1_3:17219569-17219588 | Msa0107220:CDS | 40.0% | |
| TTATCCCGATCTCATGTTGA+AGG | + | chr1_3:17219938-17219957 | Msa0107220:intron | 40.0% | |
| TATGGCCTTCAACATGAGAT+CGG | - | chr1_3:17219946-17219965 | None:intergenic | 40.0% | |
| TCATGTTGAAGGCCATAGAT+TGG | + | chr1_3:17219949-17219968 | Msa0107220:intron | 40.0% | |
| AAGAGAAACATTTGGGGGTT+TGG | - | chr1_3:17220076-17220095 | None:intergenic | 40.0% | |
| GAATGAGTTATTGCAAGGGA+AGG | + | chr1_3:17220387-17220406 | Msa0107220:CDS | 40.0% | |
| !! | TTAGAAGTGTTGATGAGGAC+AGG | + | chr1_3:17220416-17220435 | Msa0107220:CDS | 40.0% |
| !! | TAGAAGTGTTGATGAGGACA+GGG | + | chr1_3:17220417-17220436 | Msa0107220:CDS | 40.0% |
| AACAGCTGCCTTAAAACACA+AGG | + | chr1_3:17220910-17220929 | Msa0107220:CDS | 40.0% | |
| ! | TCCTGAGACCTTGTGTTTTA+AGG | - | chr1_3:17220921-17220940 | None:intergenic | 40.0% |
| ! | AATTCGGTGGAGTTGAAAGT+AGG | + | chr1_3:17221225-17221244 | Msa0107220:CDS | 40.0% |
| ! | ATTCGGTGGAGTTGAAAGTA+GGG | + | chr1_3:17221226-17221245 | Msa0107220:CDS | 40.0% |
| ATGAACATCTCGACTATGGA+TGG | + | chr1_3:17221280-17221299 | Msa0107220:CDS | 40.0% | |
| GACTATGGATGGTTCACTAA+AGG | + | chr1_3:17221291-17221310 | Msa0107220:CDS | 40.0% | |
| !!! | GCTTGTGTCTTGCCATTTTA+AGG | + | chr1_3:17221428-17221447 | Msa0107220:intron | 40.0% |
| TCTTGATGAACCTTGAGGAT+TGG | - | chr1_3:17221617-17221636 | None:intergenic | 40.0% | |
| CAATGTCTTGATGAACCTTG+AGG | - | chr1_3:17221622-17221641 | None:intergenic | 40.0% | |
| CATCAAGACATTGTCTTCCT+CGG | + | chr1_3:17221629-17221648 | Msa0107220:intron | 40.0% | |
| GAAGTGAGATTTGTGGTATG+TGG | + | chr1_3:17222523-17222542 | Msa0107220:intron | 40.0% | |
| AGCCAAGCTCTCAGAATATT+TGG | - | chr1_3:17222809-17222828 | None:intergenic | 40.0% | |
| ATCAGGTGGAAATGTCACAT+AGG | + | chr1_3:17223032-17223051 | Msa0107220:intron | 40.0% | |
| ! | GAATTTGAAGTGGAGTTGCT+CGG | + | chr1_3:17223229-17223248 | Msa0107220:intron | 40.0% |
| CACCATCATCACTATTGTTG+CGG | + | chr1_3:17223311-17223330 | Msa0107220:intron | 40.0% | |
| TAACACGACGATAGAGAAAC+TGG | - | chr1_3:17223369-17223388 | None:intergenic | 40.0% | |
| AGTTTCTCTATCGTCGTGTT+AGG | + | chr1_3:17223368-17223387 | Msa0107220:intron | 40.0% | |
| ATGGAATTCGATAACGCTTC+GGG | - | chr1_3:17223402-17223421 | None:intergenic | 40.0% | |
| GATGGAATTCGATAACGCTT+CGG | - | chr1_3:17223403-17223422 | None:intergenic | 40.0% | |
| ATGTGACCAATACAATGGTC+TGG | + | chr1_3:17223512-17223531 | Msa0107220:intron | 40.0% | |
| GTACCTATTAGGTACTCCAT+TGG | + | chr1_3:17223582-17223601 | Msa0107220:intron | 40.0% | |
| ACCTATTAGGTACTCCATTG+GGG | + | chr1_3:17223584-17223603 | Msa0107220:intron | 40.0% | |
| !! | TTAAGACCCCCACTTTTAAG+CGG | + | chr1_3:17223617-17223636 | Msa0107220:intron | 40.0% |
| TGAGGATTCCGCTTAAAAGT+GGG | - | chr1_3:17223628-17223647 | None:intergenic | 40.0% | |
| !! | TTTGTGAAATGTTGGGTTGG+AGG | + | chr1_3:17223726-17223745 | Msa0107220:intron | 40.0% |
| AATGGATGTCTCCATTGTAG+AGG | + | chr1_3:17223830-17223849 | Msa0107220:intron | 40.0% | |
| TTCACATCACCTTAGAGTAG+GGG | - | chr1_3:17223908-17223927 | None:intergenic | 40.0% | |
| TGAGAATAATGCCGTTAGCT+AGG | - | chr1_3:17224328-17224347 | None:intergenic | 40.0% | |
| GCTAGAAACATCATAGGGAT+AGG | - | chr1_3:17224383-17224402 | None:intergenic | 40.0% | |
| !!! | CAGGGAATGCCAATGTTTTT+TGG | + | chr1_3:17225561-17225580 | Msa0107220:intron | 40.0% |
| TCAAGTGTTCACTATGGACG+TGG | + | chr1_3:17218176-17218195 | Msa0107220:CDS | 45.0% | |
| CAAGTGTTCACTATGGACGT+GGG | + | chr1_3:17218177-17218196 | Msa0107220:CDS | 45.0% | |
| TTGAAGCTGGCGAAGTTGAA+TGG | - | chr1_3:17218234-17218253 | None:intergenic | 45.0% | |
| !! | CTAGTTCTTGGTCTTGAAGC+TGG | - | chr1_3:17218247-17218266 | None:intergenic | 45.0% |
| !! | GCAGGTTAGCTTACATGACA+GGG | - | chr1_3:17218426-17218445 | None:intergenic | 45.0% |
| !! | AGCAGGTTAGCTTACATGAC+AGG | - | chr1_3:17218427-17218446 | None:intergenic | 45.0% |
| GGTGGAACTCATTGATCACT+TGG | + | chr1_3:17218576-17218595 | Msa0107220:intron | 45.0% | |
| GGACTCAATCACTTGGTCAT+AGG | + | chr1_3:17218597-17218616 | Msa0107220:intron | 45.0% | |
| ATTAGTGCTACGCATGGCTT+TGG | + | chr1_3:17218898-17218917 | Msa0107220:intron | 45.0% | |
| CAGACCCATTTGGAAGTCTA+AGG | - | chr1_3:17219178-17219197 | None:intergenic | 45.0% | |
| ! | CTTTTTCTTGAGGGGTTGTC+TGG | - | chr1_3:17219468-17219487 | None:intergenic | 45.0% |
| ATGGCCTTCAACATGAGATC+GGG | - | chr1_3:17219945-17219964 | None:intergenic | 45.0% | |
| ATGTAGGTAGCCTCTGTTTC+AGG | - | chr1_3:17220348-17220367 | None:intergenic | 45.0% | |
| TGAAACAGAGGCTACCTACA+TGG | + | chr1_3:17220347-17220366 | Msa0107220:intron | 45.0% | |
| TACCATTATCCCAGCCACAA+AGG | + | chr1_3:17220588-17220607 | Msa0107220:CDS | 45.0% | |
| TTCCTTTGTGGCTGGGATAA+TGG | - | chr1_3:17220593-17220612 | None:intergenic | 45.0% | |
| GACAATGCCCGAAGAAGATA+TGG | + | chr1_3:17220855-17220874 | Msa0107220:CDS | 45.0% | |
| GCCTTAAAACACAAGGTCTC+AGG | + | chr1_3:17220917-17220936 | Msa0107220:CDS | 45.0% | |
| TTCGGTGGAGTTGAAAGTAG+GGG | + | chr1_3:17221227-17221246 | Msa0107220:CDS | 45.0% | |
| TGAAAGTAGGGGAAGGAACA+TGG | + | chr1_3:17221238-17221257 | Msa0107220:CDS | 45.0% | |
| ! | GGAAGGAACATGGTTTGTAG+AGG | + | chr1_3:17221248-17221267 | Msa0107220:CDS | 45.0% |
| ATGGATGGTTCACTAAAGGC+TGG | + | chr1_3:17221295-17221314 | Msa0107220:CDS | 45.0% | |
| TGCAACTGTGTTCTTCCCAT+TGG | + | chr1_3:17221501-17221520 | Msa0107220:intron | 45.0% | |
| AAATCAGAAGGCAGTCCAAC+AGG | + | chr1_3:17221586-17221605 | Msa0107220:intron | 45.0% | |
| TGATGAACCTTGAGGATTGG+AGG | - | chr1_3:17221614-17221633 | None:intergenic | 45.0% | |
| TCTTTGATTAAAGGCGACCG+AGG | - | chr1_3:17221649-17221668 | None:intergenic | 45.0% | |
| GGCATGATCAGCATATCGTA+TGG | + | chr1_3:17222439-17222458 | Msa0107220:intron | 45.0% | |
| GTCGATTACTCCATCTGATG+TGG | + | chr1_3:17222996-17223015 | Msa0107220:intron | 45.0% | |
| AGGTGGAAATGTCACATAGG+CGG | + | chr1_3:17223035-17223054 | Msa0107220:intron | 45.0% | |
| AATGTCACATAGGCGGTTAG+TGG | + | chr1_3:17223042-17223061 | Msa0107220:intron | 45.0% | |
| GGCCACAACATGTTAGTAAG+AGG | + | chr1_3:17223063-17223082 | Msa0107220:intron | 45.0% | |
| ! | GATGATGGTGATAGTGACGA+CGG | - | chr1_3:17223301-17223320 | None:intergenic | 45.0% |
| ! | GATGTTGATTACGGCGTCAA+TGG | - | chr1_3:17223337-17223356 | None:intergenic | 45.0% |
| ! | CGGCTACTCGATGTTGATTA+CGG | - | chr1_3:17223346-17223365 | None:intergenic | 45.0% |
| GCAAGACCAGACCATTGTAT+TGG | - | chr1_3:17223521-17223540 | None:intergenic | 45.0% | |
| TTGCGAAGACCATCTCCAAT+GGG | + | chr1_3:17223537-17223556 | Msa0107220:intron | 45.0% | |
| AATGGTTAAGACCCTCCCAT+TGG | - | chr1_3:17223555-17223574 | None:intergenic | 45.0% | |
| ! | TCCCCAATGGAGTACCTAAT+AGG | - | chr1_3:17223588-17223607 | None:intergenic | 45.0% |
| AGGATTCCGCTTAAAAGTGG+GGG | - | chr1_3:17223626-17223645 | None:intergenic | 45.0% | |
| GAGGATTCCGCTTAAAAGTG+GGG | - | chr1_3:17223627-17223646 | None:intergenic | 45.0% | |
| GTGAGGATTCCGCTTAAAAG+TGG | - | chr1_3:17223629-17223648 | None:intergenic | 45.0% | |
| ! | CAGACAGGGACATCTAAAGT+AGG | - | chr1_3:17223878-17223897 | None:intergenic | 45.0% |
| TTACAGCTGGGGAAGTTGAA+TGG | - | chr1_3:17224540-17224559 | None:intergenic | 45.0% | |
| !! | AAGCTCTTGGTCTTACAGCT+GGG | - | chr1_3:17224552-17224571 | None:intergenic | 45.0% |
| TGAGTGTGCTTACAAGCTCT+TGG | - | chr1_3:17224565-17224584 | None:intergenic | 45.0% | |
| !!! | TATTAATTTCATTATTATTT+TGG | + | chr1_3:17220636-17220655 | Msa0107220:intron | 5.0% |
| !!! | GTTTTTTTATTTAAATTTAT+GGG | + | chr1_3:17224963-17224982 | Msa0107220:intron | 5.0% |
| GCTGGCGAAGTTGAATGGTT+TGG | - | chr1_3:17218229-17218248 | None:intergenic | 50.0% | |
| AAGGAAAACCCTGACAGAGC+TGG | - | chr1_3:17218450-17218469 | None:intergenic | 50.0% | |
| CTCGCGAGCGATTCATCATT+TGG | + | chr1_3:17218555-17218574 | Msa0107220:intron | 50.0% | |
| GCGAGCGATTCATCATTTGG+TGG | + | chr1_3:17218558-17218577 | Msa0107220:intron | 50.0% | |
| ACTGTTGCTGCTACACCTCA+AGG | + | chr1_3:17219512-17219531 | Msa0107220:CDS | 50.0% | |
| CTGTTGCTGCTACACCTCAA+GGG | + | chr1_3:17219513-17219532 | Msa0107220:CDS | 50.0% | |
| GCAGAGGCTAATAGAGACAG+AGG | + | chr1_3:17219812-17219831 | Msa0107220:intron | 50.0% | |
| GAGGCTAATAGAGACAGAGG+AGG | + | chr1_3:17219815-17219834 | Msa0107220:intron | 50.0% | |
| CTTTGGGCATGGTTCCTTTG+TGG | - | chr1_3:17220605-17220624 | None:intergenic | 50.0% | |
| ! | CCTTGAAACTGCTTTGGGCA+TGG | - | chr1_3:17220616-17220635 | None:intergenic | 50.0% |
| CCATGCCCAAAGCAGTTTCA+AGG | + | chr1_3:17220613-17220632 | Msa0107220:CDS | 50.0% | |
| !! | TCTGCTTTTGATCCCCGACA+AGG | + | chr1_3:17220790-17220809 | Msa0107220:intron | 50.0% |
| GTGGAGTTGAAAGTAGGGGA+AGG | + | chr1_3:17221231-17221250 | Msa0107220:CDS | 50.0% | |
| !! | TGAGGATTGGAGGTACCTGT+TGG | - | chr1_3:17221604-17221623 | None:intergenic | 50.0% |
| ACAGGTACCTCCAATCCTCA+AGG | + | chr1_3:17221604-17221623 | Msa0107220:intron | 50.0% | |
| ACCTTATACAGGAAGCCCCA+AGG | + | chr1_3:17222403-17222422 | Msa0107220:intron | 50.0% | |
| TCCTTGGGGCTTCCTGTATA+AGG | - | chr1_3:17222407-17222426 | None:intergenic | 50.0% | |
| CCCTCTGATTGTCTTCCTTG+GGG | - | chr1_3:17222421-17222440 | None:intergenic | 50.0% | |
| CCCCAAGGAAGACAATCAGA+GGG | + | chr1_3:17222418-17222437 | Msa0107220:intron | 50.0% | |
| GCCCTCTGATTGTCTTCCTT+GGG | - | chr1_3:17222422-17222441 | None:intergenic | 50.0% | |
| TGCCCTCTGATTGTCTTCCT+TGG | - | chr1_3:17222423-17222442 | None:intergenic | 50.0% | |
| ! | TTCTGAGAGCTTGGCTGCAA+TGG | + | chr1_3:17222813-17222832 | Msa0107220:intron | 50.0% |
| AATCACGACTTCATGGGCGT+GGG | + | chr1_3:17223261-17223280 | Msa0107220:intron | 50.0% | |
| GGCCGCAACAATAGTGATGA+TGG | - | chr1_3:17223316-17223335 | None:intergenic | 50.0% | |
| CACGACGATAGAGAAACTGG+CGG | - | chr1_3:17223366-17223385 | None:intergenic | 50.0% | |
| CTCTATCGTCGTGTTAGGTG+TGG | + | chr1_3:17223373-17223392 | Msa0107220:intron | 50.0% | |
| GAATTCGATAACGCTTCGGG+TGG | - | chr1_3:17223399-17223418 | None:intergenic | 50.0% | |
| CTTGCGAAGACCATCTCCAA+TGG | + | chr1_3:17223536-17223555 | Msa0107220:intron | 50.0% | |
| GAAGACCATCTCCAATGGGA+GGG | + | chr1_3:17223541-17223560 | Msa0107220:intron | 50.0% | |
| TAAGACCCTCCCATTGGAGA+TGG | - | chr1_3:17223549-17223568 | None:intergenic | 50.0% | |
| GATGGTCAGAGCCTCTACAA+TGG | - | chr1_3:17223844-17223863 | None:intergenic | 50.0% | |
| !! | AGCTCTTGGTCTTACAGCTG+GGG | - | chr1_3:17224551-17224570 | None:intergenic | 50.0% |
| !! | CAAGCTCTTGGTCTTACAGC+TGG | - | chr1_3:17224553-17224572 | None:intergenic | 50.0% |
| CACATGCTGGATGTTGACAC+CGG | - | chr1_3:17225438-17225457 | None:intergenic | 50.0% | |
| TGGACGTGGGAGTGAAGCTA+AGG | + | chr1_3:17218190-17218209 | Msa0107220:CDS | 55.0% | |
| GGACGTGGGAGTGAAGCTAA+GGG | + | chr1_3:17218191-17218210 | Msa0107220:CDS | 55.0% | |
| TAACCTGCTCCAGCTCTGTC+AGG | + | chr1_3:17218438-17218457 | Msa0107220:intron | 55.0% | |
| AACCTGCTCCAGCTCTGTCA+GGG | + | chr1_3:17218439-17218458 | Msa0107220:intron | 55.0% | |
| TTTGCGCGCTCTCTCAGATG+TGG | + | chr1_3:17219257-17219276 | Msa0107220:CDS | 55.0% | |
| AATAGAGACAGAGGAGGCCG+CGG | + | chr1_3:17219821-17219840 | Msa0107220:intron | 55.0% | |
| ! | GTGTTGATGAGGACAGGGCA+CGG | + | chr1_3:17220422-17220441 | Msa0107220:CDS | 55.0% |
| GGCATGGTTCCTTTGTGGCT+GGG | - | chr1_3:17220600-17220619 | None:intergenic | 55.0% | |
| TGCATGTCGACGACCTTGTC+GGG | - | chr1_3:17220806-17220825 | None:intergenic | 55.0% | |
| CTGCATGTCGACGACCTTGT+CGG | - | chr1_3:17220807-17220826 | None:intergenic | 55.0% | |
| GCCCCAAGGAAGACAATCAG+AGG | + | chr1_3:17222417-17222436 | Msa0107220:intron | 55.0% | |
| GAATCACGACTTCATGGGCG+TGG | + | chr1_3:17223260-17223279 | Msa0107220:intron | 55.0% | |
| CGAAGACCATCTCCAATGGG+AGG | + | chr1_3:17223540-17223559 | Msa0107220:intron | 55.0% | |
| TGCCTGTCACCCCTACTCTA+AGG | + | chr1_3:17223896-17223915 | Msa0107220:intron | 55.0% | |
| CACCTTAGAGTAGGGGTGAC+AGG | - | chr1_3:17223901-17223920 | None:intergenic | 55.0% | |
| CTGGATGTTGACACCGGTAG+TGG | - | chr1_3:17225432-17225451 | None:intergenic | 55.0% | |
| AACCCTGACAGAGCTGGAGC+AGG | - | chr1_3:17218444-17218463 | None:intergenic | 60.0% | |
| GGGCATGGTTCCTTTGTGGC+TGG | - | chr1_3:17220601-17220620 | None:intergenic | 60.0% | |
| GCATGTCGACGACCTTGTCG+GGG | - | chr1_3:17220805-17220824 | None:intergenic | 60.0% | |
| GTAGGGGTGACAGGCAGACA+GGG | - | chr1_3:17223892-17223911 | None:intergenic | 60.0% | |
| AGTAGGGGTGACAGGCAGAC+AGG | - | chr1_3:17223893-17223912 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 17218173 | 17226251 | 17218173 | ID=Msa0107220;Name=Msa0107220 |
| chr1_3 | mRNA | 17218173 | 17226251 | 17218173 | ID=Msa0107220-mRNA-1;Parent=Msa0107220;Name=Msa0107220-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|1|0.11|0.2|10|0|521 |
| chr1_3 | exon | 17218173 | 17218265 | 17218173 | ID=Msa0107220-mRNA-1:exon:6520;Parent=Msa0107220-mRNA-1 |
| chr1_3 | exon | 17219143 | 17219309 | 17219143 | ID=Msa0107220-mRNA-1:exon:6521;Parent=Msa0107220-mRNA-1 |
| chr1_3 | exon | 17219346 | 17219594 | 17219346 | ID=Msa0107220-mRNA-1:exon:6522;Parent=Msa0107220-mRNA-1 |
| chr1_3 | exon | 17219826 | 17219952 | 17219826 | ID=Msa0107220-mRNA-1:exon:6523;Parent=Msa0107220-mRNA-1 |
| chr1_3 | exon | 17220355 | 17220447 | 17220355 | ID=Msa0107220-mRNA-1:exon:6524;Parent=Msa0107220-mRNA-1 |
| chr1_3 | exon | 17220493 | 17220634 | 17220493 | ID=Msa0107220-mRNA-1:exon:6525;Parent=Msa0107220-mRNA-1 |
| chr1_3 | exon | 17220812 | 17220940 | 17220812 | ID=Msa0107220-mRNA-1:exon:6526;Parent=Msa0107220-mRNA-1 |
| chr1_3 | exon | 17221032 | 17221090 | 17221032 | ID=Msa0107220-mRNA-1:exon:6527;Parent=Msa0107220-mRNA-1 |
| chr1_3 | exon | 17221174 | 17221401 | 17221174 | ID=Msa0107220-mRNA-1:exon:6528;Parent=Msa0107220-mRNA-1 |
| chr1_3 | exon | 17225973 | 17226251 | 17225973 | ID=Msa0107220-mRNA-1:exon:6529;Parent=Msa0107220-mRNA-1 |
| chr1_3 | CDS | 17218173 | 17218265 | 17218173 | ID=Msa0107220-mRNA-1:cds;Parent=Msa0107220-mRNA-1 |
| chr1_3 | CDS | 17219143 | 17219309 | 17219143 | ID=Msa0107220-mRNA-1:cds;Parent=Msa0107220-mRNA-1 |
| chr1_3 | CDS | 17219346 | 17219594 | 17219346 | ID=Msa0107220-mRNA-1:cds;Parent=Msa0107220-mRNA-1 |
| chr1_3 | CDS | 17219826 | 17219952 | 17219826 | ID=Msa0107220-mRNA-1:cds;Parent=Msa0107220-mRNA-1 |
| chr1_3 | CDS | 17220355 | 17220447 | 17220355 | ID=Msa0107220-mRNA-1:cds;Parent=Msa0107220-mRNA-1 |
| chr1_3 | CDS | 17220493 | 17220634 | 17220493 | ID=Msa0107220-mRNA-1:cds;Parent=Msa0107220-mRNA-1 |
| chr1_3 | CDS | 17220812 | 17220940 | 17220812 | ID=Msa0107220-mRNA-1:cds;Parent=Msa0107220-mRNA-1 |
| chr1_3 | CDS | 17221032 | 17221090 | 17221032 | ID=Msa0107220-mRNA-1:cds;Parent=Msa0107220-mRNA-1 |
| chr1_3 | CDS | 17221174 | 17221401 | 17221174 | ID=Msa0107220-mRNA-1:cds;Parent=Msa0107220-mRNA-1 |
| chr1_3 | CDS | 17225973 | 17226251 | 17225973 | ID=Msa0107220-mRNA-1:cds;Parent=Msa0107220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
