AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0108080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0108080 MtrunA17_Chr1g0164731 85.009 567 36 1 1 518 18 584 0.0 968
Msa0108080 MtrunA17_Chr1g0164761 63.855 581 115 5 22 527 2 562 0.0 723
Msa0108080 MtrunA17_Chr5g0410721 48.354 486 201 2 10 446 71 555 9.80e-162 481
Msa0108080 MtrunA17_Chr3g0116441 31.267 371 178 9 13 317 3 362 7.65e-46 173
Msa0108080 MtrunA17_Chr8g0380981 31.053 380 154 9 24 296 39 417 1.72e-36 144
Msa0108080 MtrunA17_Chr1g0189211 27.392 533 255 18 25 434 147 670 2.03e-34 138
Msa0108080 MtrunA17_Chr5g0397501 28.979 421 223 15 107 463 302 710 1.12e-33 136
Msa0108080 MtrunA17_Chr2g0303101 26.916 535 262 19 24 436 48 575 8.52e-33 133
Msa0108080 MtrunA17_Chr1g0199511 33.696 184 77 2 172 310 291 474 3.11e-27 117
Msa0108080 MtrunA17_Chr7g0214951 65.714 70 7 1 201 270 99 151 2.98e-21 92.4
Msa0108080 MtrunA17_Chr7g0214941 59.259 54 21 1 435 488 22 74 9.98e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0108080 AT5G46910.2 46.502 486 210 2 2 438 77 561 2.67e-158 466
Msa0108080 AT5G46910.1 46.502 486 210 2 2 438 77 561 7.07e-157 466
Msa0108080 AT2G34880.1 28.654 520 255 18 25 434 58 571 1.36e-39 154
Msa0108080 AT1G30810.3 27.632 532 254 16 24 434 55 576 2.14e-38 150
Msa0108080 AT1G30810.2 27.632 532 254 16 24 434 55 576 2.14e-38 150
Msa0108080 AT1G30810.1 27.632 532 254 16 24 434 55 576 2.14e-38 150
Msa0108080 AT3G48430.1 28.084 381 191 8 12 310 4 383 2.53e-37 147
Msa0108080 AT1G63490.1 35.227 264 110 7 107 311 46 307 3.38e-35 141
Msa0108080 AT1G63490.4 35.227 264 110 7 107 311 299 560 3.43e-35 141
Msa0108080 AT1G63490.2 35.227 264 110 7 107 311 299 560 4.01e-35 141
Msa0108080 AT1G08620.3 30.024 413 168 12 25 320 157 565 4.28e-35 141
Msa0108080 AT1G08620.2 30.024 413 168 12 25 320 143 551 4.84e-35 140
Msa0108080 AT1G08620.4 30.024 413 168 12 25 320 143 551 4.84e-35 140
Msa0108080 AT1G08620.1 30.024 413 168 12 25 320 143 551 4.84e-35 140
Msa0108080 AT4G20400.1 27.318 399 181 11 24 315 52 448 7.80e-33 134
Msa0108080 AT4G20400.2 23.953 597 300 17 36 481 7 600 9.67e-30 124
Msa0108080 AT5G04240.1 35.870 184 73 2 172 310 259 442 8.80e-29 122
Msa0108080 AT2G38950.1 23.614 487 264 17 22 411 102 577 7.69e-18 87.4

Find 82 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGCCATTGTACAGTCTTTC+TGG 0.128715 1_3:+19419905 Msa0108080:CDS
TTGATTTGGATGATCTAAAT+TGG 0.212573 1_3:+19417787 Msa0108080:CDS
TGTCGTAATGAAAGAGAAAA+AGG 0.256315 1_3:+19418161 Msa0108080:CDS
GCTCCTGAGGCTTCTAAATA+TGG 0.273176 1_3:+19417891 Msa0108080:CDS
TTGGTGATTGGTTTCCATTT+GGG 0.283394 1_3:+19419737 Msa0108080:CDS
AAACAATTGTACAGCCTCTT+AGG 0.293247 1_3:+19418196 Msa0108080:CDS
TCCTGCAATATCTTCTGTTT+TGG 0.293249 1_3:+19420768 Msa0108080:CDS
TTCTGAACTGCAAAATCTAT+TGG 0.303788 1_3:-19418388 None:intergenic
CAAATCGAATGAACTTGATT+TGG 0.304291 1_3:+19417773 Msa0108080:CDS
AGTTCCTCATATGGAATTAT+AGG 0.316333 1_3:-19419799 None:intergenic
GAGAAGGGAACAGTTGAGTA+TGG 0.324983 1_3:+19418465 Msa0108080:CDS
AGATCTTCAAATACATCATT+AGG 0.331595 1_3:+19419988 Msa0108080:CDS
GCAGGATTAGAGGCACTAAT+TGG 0.334358 1_3:-19418132 None:intergenic
ATAAAGGGTTCGCGGTCTTT+TGG 0.338413 1_3:-19420707 None:intergenic
ATTGGTGATTGGTTTCCATT+TGG 0.339040 1_3:+19419736 Msa0108080:CDS
TTACAAAGAAGTTCCTCATA+TGG 0.344918 1_3:-19419808 None:intergenic
GGATGGTAAACTGGACATTC+TGG 0.345953 1_3:-19417822 None:intergenic
TTACCATGGAAAAGGCAAAT+TGG 0.347643 1_3:-19420084 None:intergenic
TGTTCTGATGGATGGTAAAC+TGG 0.349116 1_3:-19417831 None:intergenic
CTCATTCCAAGTTTGTCATC+AGG 0.354917 1_3:-19418522 None:intergenic
TATATCCTTCTCATTCCATT+TGG 0.357030 1_3:-19418223 None:intergenic
ACAAGAATTTGAACATCCTT+TGG 0.371944 1_3:+19417851 Msa0108080:CDS
TAAACTTTGCTATTGGTGAT+TGG 0.380389 1_3:+19419725 Msa0108080:CDS
AATGAGCAAATTCAATTTGA+AGG 0.382800 1_3:+19418539 Msa0108080:CDS
GACAAAATCAGCAGGATTAG+AGG 0.384347 1_3:-19418142 None:intergenic
GAAGAACTGTCAACTCTGTA+AGG 0.420264 1_3:+19420566 Msa0108080:CDS
TTTCTTGCTGCAGCCCCAAA+TGG 0.452844 1_3:-19419751 None:intergenic
GAAGCTGTAAACTTTGCTAT+TGG 0.453482 1_3:+19419718 Msa0108080:CDS
GCTACCTATAATTCCATATG+AGG 0.458631 1_3:+19419795 Msa0108080:CDS
ACTGAAAGCAGAATGATAAT+CGG 0.460027 1_3:+19420524 Msa0108080:intron
CTGATCCTATGCTTTACATT+GGG 0.461409 1_3:+19418786 Msa0108080:CDS
TTCCATTTGGAAAGCCTAAG+AGG 0.464543 1_3:-19418210 None:intergenic
ACTGATCCTATGCTTTACAT+TGG 0.488180 1_3:+19418785 Msa0108080:CDS
TGTTCAAATTCTTGTTCTGA+TGG 0.490595 1_3:-19417843 None:intergenic
GGTGGAAATAAAACTTGGTA+TGG 0.496778 1_3:+19418968 Msa0108080:CDS
ATTTACATATCAAGAATTTG+AGG 0.498743 1_3:+19418344 Msa0108080:CDS
TTCATTACGACAAAATCAGC+AGG 0.500609 1_3:-19418150 None:intergenic
TGACATGCAGCCTCTGCCAT+AGG 0.501176 1_3:+19420016 Msa0108080:CDS
ACCAAAACAGAAGATATTGC+AGG 0.502442 1_3:-19420769 None:intergenic
AATTGAGAGGCTGCCGAGCT+AGG 0.502653 1_3:-19418995 None:intergenic
ATTGGAAAATGCCTTGTTTG+CGG 0.504470 1_3:-19418370 None:intergenic
AGCCTCTTAGGCTTTCCAAA+TGG 0.506480 1_3:+19418208 Msa0108080:CDS
CAAATTCTTGTTCTGATGGA+TGG 0.506874 1_3:-19417839 None:intergenic
TGGTGATTGGTTTCCATTTG+GGG 0.516058 1_3:+19419738 Msa0108080:CDS
TAGAAGATCACTATTTGTAC+AGG 0.521776 1_3:+19418837 Msa0108080:CDS
CGAAATGATACATGGAGAGA+AGG 0.529280 1_3:+19418449 Msa0108080:CDS
TTACCTTCCTCTCTTAGAGA+AGG 0.529901 1_3:-19418250 None:intergenic
CTCAAATTATAAAGGGTTCG+CGG 0.531379 1_3:-19420715 None:intergenic
ACTTAGGTGGAAATAAAACT+TGG 0.531960 1_3:+19418963 Msa0108080:CDS
AGCATAAATTATCATCACTT+AGG 0.537173 1_3:+19418947 Msa0108080:intron
TTAGCAGAACATGGAGAGAA+TGG 0.538483 1_3:+19419058 Msa0108080:CDS
TCTACAGAAAATTGCTCCTG+AGG 0.540615 1_3:+19417878 Msa0108080:CDS
TGTGATCCTGATGACAAACT+TGG 0.546719 1_3:+19418516 Msa0108080:CDS
ATACCATATTTAGAAGCCTC+AGG 0.547248 1_3:-19417894 None:intergenic
TTGGTATGGTGTGCCTAGCT+CGG 0.549146 1_3:+19418982 Msa0108080:CDS
AAGCTACATAACAATCCCTA+TGG 0.550057 1_3:-19420032 None:intergenic
GAGTATGGAGTCAACATTGA+GGG 0.553863 1_3:+19418480 Msa0108080:CDS
ATGGAAAAGGCAAATTGGAT+AGG 0.554570 1_3:-19420079 None:intergenic
GACATGCAGCCTCTGCCATA+GGG 0.557662 1_3:+19420017 Msa0108080:CDS
TAACCTTCTCTAAGAGAGGA+AGG 0.559927 1_3:+19418247 Msa0108080:CDS
TTCTGGCACGAAATGATACA+TGG 0.572727 1_3:+19418441 Msa0108080:CDS
ATTTGAGGCTACCGCAAACA+AGG 0.578570 1_3:+19418359 Msa0108080:CDS
TACTTCTCCATCAGTGATGA+GGG 0.579966 1_3:+19420684 Msa0108080:CDS
GAAATGATACATGGAGAGAA+GGG 0.582021 1_3:+19418450 Msa0108080:CDS
ATAATAACCTTCTCTAAGAG+AGG 0.584975 1_3:+19418243 Msa0108080:CDS
ATAAATTATCATCACTTAGG+TGG 0.586118 1_3:+19418950 Msa0108080:CDS
CATAACAATCCCTATGGCAG+AGG 0.587190 1_3:-19420026 None:intergenic
CAAAAGCAAACTCGAAGCCA+TGG 0.587402 1_3:+19419873 Msa0108080:CDS
AAGAACTGTCAACTCTGTAA+GGG 0.595848 1_3:+19420567 Msa0108080:CDS
AACAAAATCTTAGCAGAACA+TGG 0.596081 1_3:+19419049 Msa0108080:CDS
ATACTTCTCCATCAGTGATG+AGG 0.601559 1_3:+19420683 Msa0108080:CDS
GCTTTCCAAATGGAATGAGA+AGG 0.605970 1_3:+19418218 Msa0108080:CDS
AATGGCACAATAAGATGCCA+TGG 0.612133 1_3:-19419890 None:intergenic
AGCATCCCAATGTAAAGCAT+AGG 0.618659 1_3:-19418791 None:intergenic
TAAACTGAAAACAAGAGTCA+CGG 0.629474 1_3:+19420600 Msa0108080:CDS
AAAAGAATCAGAAGATGACA+AGG 0.635509 1_3:+19420644 Msa0108080:CDS
CCGTTGCGTTTAGTTGACAG+AGG 0.635990 1_3:+19418666 Msa0108080:CDS
CTTGAATTTAGAATTTGGCG+CGG 0.653536 1_3:+19418631 Msa0108080:intron
TGAGTATGGAGTCAACATTG+AGG 0.665976 1_3:+19418479 Msa0108080:CDS
CCTCTGTCAACTAAACGCAA+CGG 0.668558 1_3:-19418666 None:intergenic
ACTAAACGCAACGGAGACTG+CGG 0.678157 1_3:-19418657 None:intergenic
ATGCCAGAAAGACTGTACAA+TGG 0.727660 1_3:-19419908 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTACTGTTTTAAAATTTT+AGG + chr1_3:19418757-19418776 Msa0108080:intron 10.0%
!!! ATTACTGTTTTAAAATTTTA+GGG + chr1_3:19418758-19418777 Msa0108080:intron 10.0%
!! AAATAAAATAAAATAAGCCT+CGG - chr1_3:19418071-19418090 None:intergenic 15.0%
!!! TTATACTTGAATTTAGAATT+TGG + chr1_3:19418626-19418645 Msa0108080:intron 15.0%
!! TTTATTCTTGATAGATAAAT+TGG + chr1_3:19420147-19420166 Msa0108080:intron 15.0%
!!! ATGTTTTCTCAAATTATAAA+GGG - chr1_3:19420725-19420744 None:intergenic 15.0%
!! AGATAAAAAATAATAAACGC+CGG - chr1_3:19417957-19417976 None:intergenic 20.0%
!! AATTGATGTAACATTTAGTA+TGG + chr1_3:19418021-19418040 Msa0108080:intron 20.0%
!! TTTAGTATGGTTATCAAATA+TGG + chr1_3:19418034-19418053 Msa0108080:intron 20.0%
!!! TTTTTCATTTTGCATATTTC+AGG + chr1_3:19418090-19418109 Msa0108080:intron 20.0%
!! ATTTACATATCAAGAATTTG+AGG + chr1_3:19418344-19418363 Msa0108080:CDS 20.0%
!! TATGCTGCAAATAAAAAAAA+GGG - chr1_3:19418933-19418952 None:intergenic 20.0%
!! TTATGCTGCAAATAAAAAAA+AGG - chr1_3:19418934-19418953 None:intergenic 20.0%
!!! ACATAAGTATTTGAAATATC+AGG - chr1_3:19419590-19419609 None:intergenic 20.0%
!!! TTTATTTTCTTGTTGAGTTT+AGG + chr1_3:19419682-19419701 Msa0108080:intron 20.0%
!! AATTATCAAATAGACTAATG+AGG - chr1_3:19420112-19420131 None:intergenic 20.0%
!!! CATGTTTTCTCAAATTATAA+AGG - chr1_3:19420726-19420745 None:intergenic 20.0%
!!! TTGATTTGGATGATCTAAAT+TGG + chr1_3:19417787-19417806 Msa0108080:CDS 25.0%
!! ATTTTCTGTAGATAAACCAA+AGG - chr1_3:19417870-19417889 None:intergenic 25.0%
! GATAAAAAATAATAAACGCC+GGG - chr1_3:19417956-19417975 None:intergenic 25.0%
!!! ACATCAATTTTTTATGCATG+AGG - chr1_3:19418010-19418029 None:intergenic 25.0%
! AATGAGCAAATTCAATTTGA+AGG + chr1_3:19418539-19418558 Msa0108080:CDS 25.0%
! ATAATAACTTAATCCAGACT+AGG - chr1_3:19418720-19418739 None:intergenic 25.0%
! AGCATAAATTATCATCACTT+AGG + chr1_3:19418947-19418966 Msa0108080:intron 25.0%
! ATAAATTATCATCACTTAGG+TGG + chr1_3:19418950-19418969 Msa0108080:CDS 25.0%
!!! TTGTTTTTTGTGCAAGAAAT+TGG - chr1_3:19419090-19419109 None:intergenic 25.0%
! ATGTTGTAACAAGACATATT+AGG - chr1_3:19419124-19419143 None:intergenic 25.0%
! TCAAGGTTATTCTTATAAAC+TGG + chr1_3:19419358-19419377 Msa0108080:intron 25.0%
! GATTACTTGTGTAAATACTA+TGG - chr1_3:19419385-19419404 None:intergenic 25.0%
!!! CCTTTACATTTTTCAAGTTT+AGG - chr1_3:19419415-19419434 None:intergenic 25.0%
! CCTAAACTTGAAAAATGTAA+AGG + chr1_3:19419412-19419431 Msa0108080:intron 25.0%
!! TTTACATTTTGCACTAGATA+GGG - chr1_3:19419647-19419666 None:intergenic 25.0%
! AGATCTTCAAATACATCATT+AGG + chr1_3:19419988-19420007 Msa0108080:CDS 25.0%
! CATGTCATTCTTCTTAAAAA+CGG - chr1_3:19420232-19420251 None:intergenic 25.0%
!! TTTTACCTGTTCAAAACTTT+TGG - chr1_3:19420274-19420293 None:intergenic 25.0%
CAAATCGAATGAACTTGATT+TGG + chr1_3:19417773-19417792 Msa0108080:CDS 30.0%
TGTTCAAATTCTTGTTCTGA+TGG - chr1_3:19417846-19417865 None:intergenic 30.0%
ACAAGAATTTGAACATCCTT+TGG + chr1_3:19417851-19417870 Msa0108080:CDS 30.0%
! AGATGATTTTCTTTTCATCC+CGG + chr1_3:19417935-19417954 Msa0108080:intron 30.0%
TGTCGTAATGAAAGAGAAAA+AGG + chr1_3:19418161-19418180 Msa0108080:CDS 30.0%
TATATCCTTCTCATTCCATT+TGG - chr1_3:19418226-19418245 None:intergenic 30.0%
! ATAATAACCTTCTCTAAGAG+AGG + chr1_3:19418243-19418262 Msa0108080:CDS 30.0%
TTCTGAACTGCAAAATCTAT+TGG - chr1_3:19418391-19418410 None:intergenic 30.0%
! TGCTATTCAGTATGTTTTCA+TGG + chr1_3:19418810-19418829 Msa0108080:CDS 30.0%
TAGAAGATCACTATTTGTAC+AGG + chr1_3:19418837-19418856 Msa0108080:CDS 30.0%
ACTTAGGTGGAAATAAAACT+TGG + chr1_3:19418963-19418982 Msa0108080:CDS 30.0%
AACAAAATCTTAGCAGAACA+TGG + chr1_3:19419049-19419068 Msa0108080:CDS 30.0%
TGTAACAAGACATATTAGGA+GGG - chr1_3:19419120-19419139 None:intergenic 30.0%
TTGTAACAAGACATATTAGG+AGG - chr1_3:19419121-19419140 None:intergenic 30.0%
AGCATGATATGAATTAGGAA+AGG - chr1_3:19419196-19419215 None:intergenic 30.0%
TTTCCTAATTCATATCATGC+TGG + chr1_3:19419195-19419214 Msa0108080:intron 30.0%
AATCCAGCATGATATGAATT+AGG - chr1_3:19419201-19419220 None:intergenic 30.0%
! TTGCTATTGCTCATAGTTTA+CGG + chr1_3:19419296-19419315 Msa0108080:intron 30.0%
! TAATGGAAAGGTATGATTCA+AGG + chr1_3:19419341-19419360 Msa0108080:intron 30.0%
GAACAGGCAATATTTGATTA+TGG - chr1_3:19419470-19419489 None:intergenic 30.0%
GTCCAAAAGTAAACAGATTA+CGG - chr1_3:19419494-19419513 None:intergenic 30.0%
CTCTATATGCACAAACTATT+AGG - chr1_3:19419529-19419548 None:intergenic 30.0%
ACTTATGTTGCATACTTGTT+CGG + chr1_3:19419602-19419621 Msa0108080:intron 30.0%
! CTTTACATTTTGCACTAGAT+AGG - chr1_3:19419648-19419667 None:intergenic 30.0%
TCTAGTGCAAAATGTAAAGA+TGG + chr1_3:19419649-19419668 Msa0108080:intron 30.0%
!!! TTGAGTTTAGGTTTTAACTG+TGG + chr1_3:19419694-19419713 Msa0108080:intron 30.0%
!! TAAACTTTGCTATTGGTGAT+TGG + chr1_3:19419725-19419744 Msa0108080:CDS 30.0%
AGTTCCTCATATGGAATTAT+AGG - chr1_3:19419802-19419821 None:intergenic 30.0%
TTACAAAGAAGTTCCTCATA+TGG - chr1_3:19419811-19419830 None:intergenic 30.0%
! TTTGTAACTTCTGACTTTTG+AGG - chr1_3:19419857-19419876 None:intergenic 30.0%
TACTGCATTACTTCATCTTT+AGG + chr1_3:19420453-19420472 Msa0108080:intron 30.0%
ACTGAAAGCAGAATGATAAT+CGG + chr1_3:19420524-19420543 Msa0108080:intron 30.0%
TAAACTGAAAACAAGAGTCA+CGG + chr1_3:19420600-19420619 Msa0108080:CDS 30.0%
AAAAGAATCAGAAGATGACA+AGG + chr1_3:19420644-19420663 Msa0108080:CDS 30.0%
CAAATTCTTGTTCTGATGGA+TGG - chr1_3:19417842-19417861 None:intergenic 35.0%
ATACCATATTTAGAAGCCTC+AGG - chr1_3:19417897-19417916 None:intergenic 35.0%
!!! ATATGGTTGCATTTTTTCCG+AGG + chr1_3:19418051-19418070 Msa0108080:intron 35.0%
TTCATTACGACAAAATCAGC+AGG - chr1_3:19418153-19418172 None:intergenic 35.0%
AAACAATTGTACAGCCTCTT+AGG + chr1_3:19418196-19418215 Msa0108080:CDS 35.0%
!! ATTGGAAAATGCCTTGTTTG+CGG - chr1_3:19418373-19418392 None:intergenic 35.0%
!! TAGATATCGAAAAAGCGTTC+TGG + chr1_3:19418424-19418443 Msa0108080:CDS 35.0%
GAAATGATACATGGAGAGAA+GGG + chr1_3:19418450-19418469 Msa0108080:CDS 35.0%
! CTTGAATTTAGAATTTGGCG+CGG + chr1_3:19418631-19418650 Msa0108080:intron 35.0%
ACTGATCCTATGCTTTACAT+TGG + chr1_3:19418785-19418804 Msa0108080:CDS 35.0%
CTGATCCTATGCTTTACATT+GGG + chr1_3:19418786-19418805 Msa0108080:CDS 35.0%
GGTGGAAATAAAACTTGGTA+TGG + chr1_3:19418968-19418987 Msa0108080:CDS 35.0%
! GACAGTCTTTTCAAATTGAG+AGG - chr1_3:19419011-19419030 None:intergenic 35.0%
TATCATGCTGGATTTAGTCA+TGG + chr1_3:19419207-19419226 Msa0108080:intron 35.0%
TAAGCAGATCGCTTGAATAA+TGG + chr1_3:19419324-19419343 Msa0108080:intron 35.0%
! AGATCGCTTGAATAATGGAA+AGG + chr1_3:19419329-19419348 Msa0108080:intron 35.0%
! CTCCGTAATCTGTTTACTTT+TGG + chr1_3:19419489-19419508 Msa0108080:intron 35.0%
!! AATCTGTTTACTTTTGGACC+AGG + chr1_3:19419495-19419514 Msa0108080:intron 35.0%
!! ATCTGTTTACTTTTGGACCA+GGG + chr1_3:19419496-19419515 Msa0108080:intron 35.0%
! ATTTTGCACTAGATAGGGAT+AGG - chr1_3:19419642-19419661 None:intergenic 35.0%
! GAAGCTGTAAACTTTGCTAT+TGG + chr1_3:19419718-19419737 Msa0108080:CDS 35.0%
!! ATTGGTGATTGGTTTCCATT+TGG + chr1_3:19419736-19419755 Msa0108080:CDS 35.0%
!! TTGGTGATTGGTTTCCATTT+GGG + chr1_3:19419737-19419756 Msa0108080:CDS 35.0%
GCTACCTATAATTCCATATG+AGG + chr1_3:19419795-19419814 Msa0108080:CDS 35.0%
AAGCTACATAACAATCCCTA+TGG - chr1_3:19420035-19420054 None:intergenic 35.0%
ATGGAAAAGGCAAATTGGAT+AGG - chr1_3:19420082-19420101 None:intergenic 35.0%
! TATCCAATTTGCCTTTTCCA+TGG + chr1_3:19420081-19420100 Msa0108080:CDS 35.0%
TTACCATGGAAAAGGCAAAT+TGG - chr1_3:19420087-19420106 None:intergenic 35.0%
! ATGAGGTTTTACCATGGAAA+AGG - chr1_3:19420095-19420114 None:intergenic 35.0%
! AGACTAATGAGGTTTTACCA+TGG - chr1_3:19420101-19420120 None:intergenic 35.0%
! TGCCAAAAACTTGCTTATGT+GGG + chr1_3:19420196-19420215 Msa0108080:CDS 35.0%
AAGAACTGTCAACTCTGTAA+GGG + chr1_3:19420567-19420586 Msa0108080:CDS 35.0%
CTCAAATTATAAAGGGTTCG+CGG - chr1_3:19420718-19420737 None:intergenic 35.0%
! TCCTGCAATATCTTCTGTTT+TGG + chr1_3:19420768-19420787 Msa0108080:CDS 35.0%
ACCAAAACAGAAGATATTGC+AGG - chr1_3:19420772-19420791 None:intergenic 35.0%
! TGTTCTGATGGATGGTAAAC+TGG - chr1_3:19417834-19417853 None:intergenic 40.0%
TCTACAGAAAATTGCTCCTG+AGG + chr1_3:19417878-19417897 Msa0108080:CDS 40.0%
!! TTATGCATGAGGAGTGTTCT+TGG - chr1_3:19417999-19418018 None:intergenic 40.0%
GACAAAATCAGCAGGATTAG+AGG - chr1_3:19418145-19418164 None:intergenic 40.0%
TTCCATTTGGAAAGCCTAAG+AGG - chr1_3:19418213-19418232 None:intergenic 40.0%
GCTTTCCAAATGGAATGAGA+AGG + chr1_3:19418218-19418237 Msa0108080:CDS 40.0%
! TAACCTTCTCTAAGAGAGGA+AGG + chr1_3:19418247-19418266 Msa0108080:CDS 40.0%
TTACCTTCCTCTCTTAGAGA+AGG - chr1_3:19418253-19418272 None:intergenic 40.0%
TTCTGGCACGAAATGATACA+TGG + chr1_3:19418441-19418460 Msa0108080:CDS 40.0%
CGAAATGATACATGGAGAGA+AGG + chr1_3:19418449-19418468 Msa0108080:CDS 40.0%
TGAGTATGGAGTCAACATTG+AGG + chr1_3:19418479-19418498 Msa0108080:CDS 40.0%
GAGTATGGAGTCAACATTGA+GGG + chr1_3:19418480-19418499 Msa0108080:CDS 40.0%
TGTGATCCTGATGACAAACT+TGG + chr1_3:19418516-19418535 Msa0108080:CDS 40.0%
CTCATTCCAAGTTTGTCATC+AGG - chr1_3:19418525-19418544 None:intergenic 40.0%
GAGAAAGCGAACACTAAGAA+TGG - chr1_3:19418595-19418614 None:intergenic 40.0%
TTGACAGAGGAATTCCTGTA+AGG + chr1_3:19418679-19418698 Msa0108080:intron 40.0%
!! TCCTGTAAGGAAGCCATTTT+AGG + chr1_3:19418692-19418711 Msa0108080:intron 40.0%
TCCTAAAATGGCTTCCTTAC+AGG - chr1_3:19418696-19418715 None:intergenic 40.0%
TCCAGACTAGGTTCCTAAAA+TGG - chr1_3:19418708-19418727 None:intergenic 40.0%
AGCATCCCAATGTAAAGCAT+AGG - chr1_3:19418794-19418813 None:intergenic 40.0%
TTAGCAGAACATGGAGAGAA+TGG + chr1_3:19419058-19419077 Msa0108080:CDS 40.0%
AGACATATTAGGAGGGAACA+TGG - chr1_3:19419113-19419132 None:intergenic 40.0%
CTTGTTACAACATGATGTGC+CGG + chr1_3:19419131-19419150 Msa0108080:intron 40.0%
GTAAACAGATTACGGAGAAC+AGG - chr1_3:19419486-19419505 None:intergenic 40.0%
AGTTTGTGCATATAGAGACG+AGG + chr1_3:19419532-19419551 Msa0108080:intron 40.0%
!! TGGTGATTGGTTTCCATTTG+GGG + chr1_3:19419738-19419757 Msa0108080:CDS 40.0%
AATGGCACAATAAGATGCCA+TGG - chr1_3:19419893-19419912 None:intergenic 40.0%
ATGCCAGAAAGACTGTACAA+TGG - chr1_3:19419911-19419930 None:intergenic 40.0%
! GTGCCAAAAACTTGCTTATG+TGG + chr1_3:19420195-19420214 Msa0108080:CDS 40.0%
! GCCAAAAACTTGCTTATGTG+GGG + chr1_3:19420197-19420216 Msa0108080:CDS 40.0%
! CCAAAAACTTGCTTATGTGG+GGG + chr1_3:19420198-19420217 Msa0108080:CDS 40.0%
!!! TGCTGCCAAAAGTTTTGAAC+AGG + chr1_3:19420266-19420285 Msa0108080:CDS 40.0%
GACGCATTCAATCATGCTAT+AGG - chr1_3:19420334-19420353 None:intergenic 40.0%
GAAGAACTGTCAACTCTGTA+AGG + chr1_3:19420566-19420585 Msa0108080:CDS 40.0%
ATACTTCTCCATCAGTGATG+AGG + chr1_3:19420683-19420702 Msa0108080:CDS 40.0%
TACTTCTCCATCAGTGATGA+GGG + chr1_3:19420684-19420703 Msa0108080:CDS 40.0%
GGATGGTAAACTGGACATTC+TGG - chr1_3:19417825-19417844 None:intergenic 45.0%
GCTCCTGAGGCTTCTAAATA+TGG + chr1_3:19417891-19417910 Msa0108080:CDS 45.0%
!! GCAGGATTAGAGGCACTAAT+TGG - chr1_3:19418135-19418154 None:intergenic 45.0%
AGCCTCTTAGGCTTTCCAAA+TGG + chr1_3:19418208-19418227 Msa0108080:CDS 45.0%
! ATTTGAGGCTACCGCAAACA+AGG + chr1_3:19418359-19418378 Msa0108080:CDS 45.0%
GAGAAGGGAACAGTTGAGTA+TGG + chr1_3:19418465-19418484 Msa0108080:CDS 45.0%
CCTCTGTCAACTAAACGCAA+CGG - chr1_3:19418669-19418688 None:intergenic 45.0%
!! GCCATTTTAGGAACCTAGTC+TGG + chr1_3:19418704-19418723 Msa0108080:intron 45.0%
!! ACATGATGTGCCGGTTTACA+AGG + chr1_3:19419140-19419159 Msa0108080:intron 45.0%
! TTTTGCACCGCCTTGTAAAC+CGG - chr1_3:19419153-19419172 None:intergenic 45.0%
AAGGTGATGACAAACTCTCC+TGG - chr1_3:19419177-19419196 None:intergenic 45.0%
CTCTCTCTCTCTACATGTGT+TGG + chr1_3:19419256-19419275 Msa0108080:intron 45.0%
AACTATTAGGACTTCAGCCC+TGG - chr1_3:19419516-19419535 None:intergenic 45.0%
GCACTAGATAGGGATAGGAA+TGG - chr1_3:19419637-19419656 None:intergenic 45.0%
CAAAAGCAAACTCGAAGCCA+TGG + chr1_3:19419873-19419892 Msa0108080:CDS 45.0%
! GTGCCATTGTACAGTCTTTC+TGG + chr1_3:19419905-19419924 Msa0108080:CDS 45.0%
CATAACAATCCCTATGGCAG+AGG - chr1_3:19420029-19420048 None:intergenic 45.0%
! CCCCCACATAAGCAAGTTTT+TGG - chr1_3:19420201-19420220 None:intergenic 45.0%
! ATAAAGGGTTCGCGGTCTTT+TGG - chr1_3:19420710-19420729 None:intergenic 45.0%
ACTAAACGCAACGGAGACTG+CGG - chr1_3:19418660-19418679 None:intergenic 50.0%
CCGTTGCGTTTAGTTGACAG+AGG + chr1_3:19418666-19418685 Msa0108080:CDS 50.0%
TTGGTATGGTGTGCCTAGCT+CGG + chr1_3:19418982-19419001 Msa0108080:CDS 50.0%
!! TGATGTGCCGGTTTACAAGG+CGG + chr1_3:19419143-19419162 Msa0108080:intron 50.0%
!! GTAAAGGTACTTCAGCCGCT+AGG + chr1_3:19419428-19419447 Msa0108080:intron 50.0%
GTTCGACCAATTGTGCCTAG+CGG - chr1_3:19419446-19419465 None:intergenic 50.0%
TTTCTTGCTGCAGCCCCAAA+TGG - chr1_3:19419754-19419773 None:intergenic 50.0%
! CTTTTGGCCCTCATCACTGA+TGG - chr1_3:19420694-19420713 None:intergenic 50.0%
AATTGAGAGGCTGCCGAGCT+AGG - chr1_3:19418998-19419017 None:intergenic 55.0%
TACAAGGCGGTGCAAAAGCC+AGG + chr1_3:19419156-19419175 Msa0108080:intron 55.0%
CTTCAGCCGCTAGGCACAAT+TGG + chr1_3:19419437-19419456 Msa0108080:intron 55.0%
TGACATGCAGCCTCTGCCAT+AGG + chr1_3:19420016-19420035 Msa0108080:CDS 55.0%
GACATGCAGCCTCTGCCATA+GGG + chr1_3:19420017-19420036 Msa0108080:CDS 55.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 19417747 19420813 19417747 ID=Msa0108080;Name=Msa0108080
chr1_3 mRNA 19417747 19420813 19417747 ID=Msa0108080-mRNA-1;Parent=Msa0108080;Name=Msa0108080-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0|0|1|1|1|9|0|527
chr1_3 exon 19417747 19417912 19417747 ID=Msa0108080-mRNA-1:exon:7005;Parent=Msa0108080-mRNA-1
chr1_3 exon 19418112 19418268 19418112 ID=Msa0108080-mRNA-1:exon:7006;Parent=Msa0108080-mRNA-1
chr1_3 exon 19418341 19418560 19418341 ID=Msa0108080-mRNA-1:exon:7007;Parent=Msa0108080-mRNA-1
chr1_3 exon 19418642 19418695 19418642 ID=Msa0108080-mRNA-1:exon:7008;Parent=Msa0108080-mRNA-1
chr1_3 exon 19418779 19418858 19418779 ID=Msa0108080-mRNA-1:exon:7009;Parent=Msa0108080-mRNA-1
chr1_3 exon 19418949 19419079 19418949 ID=Msa0108080-mRNA-1:exon:7010;Parent=Msa0108080-mRNA-1
chr1_3 exon 19419704 19420102 19419704 ID=Msa0108080-mRNA-1:exon:7011;Parent=Msa0108080-mRNA-1
chr1_3 exon 19420190 19420287 19420190 ID=Msa0108080-mRNA-1:exon:7012;Parent=Msa0108080-mRNA-1
chr1_3 exon 19420535 19420813 19420535 ID=Msa0108080-mRNA-1:exon:7013;Parent=Msa0108080-mRNA-1
chr1_3 CDS 19417747 19417912 19417747 ID=Msa0108080-mRNA-1:cds;Parent=Msa0108080-mRNA-1
chr1_3 CDS 19418112 19418268 19418112 ID=Msa0108080-mRNA-1:cds;Parent=Msa0108080-mRNA-1
chr1_3 CDS 19418341 19418560 19418341 ID=Msa0108080-mRNA-1:cds;Parent=Msa0108080-mRNA-1
chr1_3 CDS 19418642 19418695 19418642 ID=Msa0108080-mRNA-1:cds;Parent=Msa0108080-mRNA-1
chr1_3 CDS 19418779 19418858 19418779 ID=Msa0108080-mRNA-1:cds;Parent=Msa0108080-mRNA-1
chr1_3 CDS 19418949 19419079 19418949 ID=Msa0108080-mRNA-1:cds;Parent=Msa0108080-mRNA-1
chr1_3 CDS 19419704 19420102 19419704 ID=Msa0108080-mRNA-1:cds;Parent=Msa0108080-mRNA-1
chr1_3 CDS 19420190 19420287 19420190 ID=Msa0108080-mRNA-1:cds;Parent=Msa0108080-mRNA-1
chr1_3 CDS 19420535 19420813 19420535 ID=Msa0108080-mRNA-1:cds;Parent=Msa0108080-mRNA-1
Gene Sequence

>Msa0108080

ATGGTTGAAAAAAGTTCAATTACTCACAAATCGAATGAACTTGATTTGGATGATCTAAATTGGACAAACATGATTCCAGAATGTCCAGTTTACCATCCATCAGAACAAGAATTTGAACATCCTTTGGTTTATCTACAGAAAATTGCTCCTGAGGCTTCTAAATATGGTATATGCAAAATTGTTTCTCCAATTAGTGCCTCTAATCCTGCTGATTTTGTCGTAATGAAAGAGAAAAAGGACTTCAAGTTTGAAACAATTGTACAGCCTCTTAGGCTTTCCAAATGGAATGAGAAGGATATAATAACCTTCTCTAAGAGAGGAAGAAAATTTACATATCAAGAATTTGAGGCTACCGCAAACAAGGCATTTTCCAATAGATTTTGCAGTTCAGAAGATCTTTCTTCGTTAGATATCGAAAAAGCGTTCTGGCACGAAATGATACATGGAGAGAAGGGAACAGTTGAGTATGGAGTCAACATTGAGGGTAGTGTCTTTTCATGTGATCCTGATGACAAACTTGGAATGAGCAAATTCAATTTGAAGAATTTGGCGCGGCTGCCGCAGTCTCCGTTGCGTTTAGTTGACAGAGGAATTCCTGGAATAACTGATCCTATGCTTTACATTGGGATGCTATTCAGTATGTTTTCATGGCATGTAGAAGATCACTATTTGTACAGCATAAATTATCATCACTTAGGTGGAAATAAAACTTGGTATGGTGTGCCTAGCTCGGCAGCCTCTCAATTTGAAAAGACTGTCTTGAATCATGTGTATTGCAACAAAATCTTAGCAGAACATGGAGAGAATGGTTTTAACTGTGGAGAAGCTGTAAACTTTGCTATTGGTGATTGGTTTCCATTTGGGGCTGCAGCAAGAAAACGTTATGCACATCTTAAAATGCTACCTATAATTCCATATGAGGAACTTCTTTGTAAAGAAGCAATGCTTATCTACAAGTCCTCAAAAGTCAGAAGTTACAAAAGCAAACTCGAAGCCATGGCATCTTATTGTGCCATTGTACAGTCTTTCTGGCATCTTATGCAATTTTATAAGACATCACTATCTCGATTGAGCAATTCAAGAAAGTCATCAAGATCTTCAAATACATCATTAGGTTCTGTGACATGCAGCCTCTGCCATAGGGATTGTTATGTAGCTTACTTGTTGTGCAAGAAATGCTATTCCTATCCAATTTGCCTTTTCCATGACATTGTGCCAAAAACTTGCTTATGTGGGGGAAAATATACCGTTTTTAAGAAGAATGACATGTCAGAACTCGAAGATGCTGCCAAAAGTTTTGAACAGAATGATAATCGGCATGAAGAAAAAAGTTCTAGAAGAACTGTCAACTCTGTAAGGGCAGTTTCTTCTAAACTGAAAACAAGAGTCACGGACAACTTCAAGCAAAGTGTTGAAAAGAATCAGAAGATGACAAGGAATCGTCGTAAAAACAATACTTCTCCATCAGTGATGAGGGCCAAAAGACCGCGAACCCTTTATAATTTGAGAAAACATGAATCAAAATTGATCATAGAAGCTCCTGCAATATCTTCTGTTTTGGTGAGATCTGAAAAATCAAAATAA
Protein sequence

>Msa0108080

MVEKSSITHKSNELDLDDLNWTNMIPECPVYHPSEQEFEHPLVYLQKIAPEASKYGICKIVSPISASNPADFVVMKEKKDFKFETIVQPLRLSKWNEKDIITFSKRGRKFTYQEFEATANKAFSNRFCSSEDLSSLDIEKAFWHEMIHGEKGTVEYGVNIEGSVFSCDPDDKLGMSKFNLKNLARLPQSPLRLVDRGIPGITDPMLYIGMLFSMFSWHVEDHYLYSINYHHLGGNKTWYGVPSSAASQFEKTVLNHVYCNKILAEHGENGFNCGEAVNFAIGDWFPFGAAARKRYAHLKMLPIIPYEELLCKEAMLIYKSSKVRSYKSKLEAMASYCAIVQSFWHLMQFYKTSLSRLSNSRKSSRSSNTSLGSVTCSLCHRDCYVAYLLCKKCYSYPICLFHDIVPKTCLCGGKYTVFKKNDMSELEDAAKSFEQNDNRHEEKSSRRTVNSVRAVSSKLKTRVTDNFKQSVEKNQKMTRNRRKNNTSPSVMRAKRPRTLYNLRKHESKLIIEAPAISSVLVRSEKSK*