Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0108240 | XP_003589766.1 | 94.828 | 174 | 4 | 2 | 1 | 169 | 1 | 174 | 5.39e-112 | 335 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0108240 | sp|Q84W66|NFYB6_ARATH | 84.375 | 96 | 15 | 0 | 4 | 99 | 56 | 151 | 2.52e-54 | 182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0108240 | G7ICG4 | 94.828 | 174 | 4 | 2 | 1 | 169 | 1 | 174 | 2.57e-112 | 335 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0108240 | TF | NF-YB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0108240 | MtrunA17_Chr1g0165041 | 94.828 | 174 | 4 | 2 | 1 | 169 | 1 | 174 | 4.96e-116 | 335 |
| Msa0108240 | MtrunA17_Chr4g0076381 | 81.188 | 101 | 19 | 0 | 4 | 104 | 56 | 156 | 4.49e-56 | 183 |
| Msa0108240 | MtrunA17_Chr7g0263601 | 64.286 | 98 | 35 | 0 | 2 | 99 | 22 | 119 | 1.11e-44 | 152 |
| Msa0108240 | MtrunA17_Chr5g0446491 | 62.037 | 108 | 41 | 0 | 5 | 112 | 22 | 129 | 1.67e-44 | 152 |
| Msa0108240 | MtrunA17_Chr2g0290491 | 63.366 | 101 | 37 | 0 | 3 | 103 | 14 | 114 | 3.07e-44 | 150 |
| Msa0108240 | MtrunA17_Chr3g0102351 | 68.421 | 95 | 30 | 0 | 5 | 99 | 26 | 120 | 5.56e-44 | 150 |
| Msa0108240 | MtrunA17_Chr8g0382931 | 64.286 | 98 | 35 | 0 | 5 | 102 | 27 | 124 | 3.49e-42 | 146 |
| Msa0108240 | MtrunA17_Chr1g0185911 | 53.125 | 128 | 53 | 2 | 5 | 126 | 28 | 154 | 1.66e-41 | 143 |
| Msa0108240 | MtrunA17_Chr8g0384451 | 60.606 | 99 | 39 | 0 | 5 | 103 | 39 | 137 | 8.35e-41 | 143 |
| Msa0108240 | MtrunA17_Chr1g0195851 | 62.500 | 96 | 36 | 0 | 4 | 99 | 34 | 129 | 4.32e-39 | 138 |
| Msa0108240 | MtrunA17_Chr2g0296321 | 62.500 | 96 | 36 | 0 | 2 | 97 | 62 | 157 | 7.19e-39 | 139 |
| Msa0108240 | MtrunA17_Chr4g0067091 | 63.830 | 94 | 34 | 0 | 4 | 97 | 20 | 113 | 1.65e-38 | 137 |
| Msa0108240 | MtrunA17_Chr4g0076321 | 57.426 | 101 | 41 | 1 | 2 | 100 | 13 | 113 | 4.00e-37 | 130 |
| Msa0108240 | MtrunA17_Chr1g0191981 | 51.087 | 92 | 45 | 0 | 6 | 97 | 4 | 95 | 5.91e-29 | 109 |
| Msa0108240 | MtrunA17_Chr1g0159271 | 55.000 | 80 | 36 | 0 | 20 | 99 | 1 | 80 | 9.62e-26 | 100 |
| Msa0108240 | MtrunA17_Chr1g0158951 | 59.375 | 64 | 26 | 0 | 36 | 99 | 19 | 82 | 2.54e-22 | 90.9 |
| Msa0108240 | MtrunA17_Chr5g0446601 | 47.917 | 96 | 47 | 1 | 2 | 94 | 17 | 112 | 3.02e-22 | 93.2 |
| Msa0108240 | MtrunA17_Chr1g0159291 | 43.421 | 76 | 43 | 0 | 11 | 86 | 7 | 82 | 1.85e-18 | 79.7 |
| Msa0108240 | MtrunA17_Chr5g0416471 | 78.261 | 46 | 10 | 0 | 329 | 374 | 52 | 97 | 2.20e-17 | 77.0 |
| Msa0108240 | MtrunA17_Chr2g0307551 | 30.682 | 88 | 61 | 0 | 7 | 94 | 12 | 99 | 3.87e-14 | 69.7 |
| Msa0108240 | MtrunA17_Chr4g0062271 | 28.723 | 94 | 67 | 0 | 1 | 94 | 6 | 99 | 5.57e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0108240 | AT5G47670.2 | 84.375 | 96 | 15 | 0 | 4 | 99 | 27 | 122 | 1.84e-55 | 181 |
| Msa0108240 | AT5G47670.1 | 84.375 | 96 | 15 | 0 | 4 | 99 | 56 | 151 | 2.56e-55 | 182 |
| Msa0108240 | AT5G47670.3 | 84.375 | 96 | 15 | 0 | 4 | 99 | 56 | 151 | 2.56e-55 | 182 |
| Msa0108240 | AT1G21970.1 | 69.231 | 130 | 22 | 2 | 5 | 116 | 58 | 187 | 7.73e-55 | 181 |
| Msa0108240 | AT4G14540.1 | 65.686 | 102 | 35 | 0 | 2 | 103 | 17 | 118 | 4.26e-46 | 155 |
| Msa0108240 | AT2G38880.3 | 64.583 | 96 | 34 | 0 | 4 | 99 | 19 | 114 | 4.25e-44 | 149 |
| Msa0108240 | AT2G38880.2 | 64.583 | 96 | 34 | 0 | 4 | 99 | 19 | 114 | 5.97e-44 | 149 |
| Msa0108240 | AT2G38880.1 | 64.583 | 96 | 34 | 0 | 4 | 99 | 19 | 114 | 5.97e-44 | 149 |
| Msa0108240 | AT2G38880.5 | 64.583 | 96 | 34 | 0 | 4 | 99 | 19 | 114 | 5.97e-44 | 149 |
| Msa0108240 | AT5G47640.1 | 64.356 | 101 | 36 | 0 | 5 | 105 | 26 | 126 | 2.47e-43 | 149 |
| Msa0108240 | AT3G53340.5 | 64.583 | 96 | 34 | 0 | 4 | 99 | 27 | 122 | 3.08e-43 | 148 |
| Msa0108240 | AT3G53340.1 | 64.583 | 96 | 34 | 0 | 4 | 99 | 27 | 122 | 3.08e-43 | 148 |
| Msa0108240 | AT2G38880.4 | 65.217 | 92 | 32 | 0 | 4 | 95 | 19 | 110 | 4.11e-43 | 146 |
| Msa0108240 | AT2G38880.7 | 63.830 | 94 | 34 | 0 | 4 | 97 | 19 | 112 | 5.67e-43 | 146 |
| Msa0108240 | AT3G53340.4 | 65.217 | 92 | 32 | 0 | 4 | 95 | 27 | 118 | 5.70e-43 | 146 |
| Msa0108240 | AT2G37060.2 | 63.542 | 96 | 35 | 0 | 4 | 99 | 28 | 123 | 8.61e-43 | 147 |
| Msa0108240 | AT2G37060.3 | 63.542 | 96 | 35 | 0 | 4 | 99 | 28 | 123 | 8.61e-43 | 147 |
| Msa0108240 | AT2G37060.1 | 63.542 | 96 | 35 | 0 | 4 | 99 | 28 | 123 | 8.61e-43 | 147 |
| Msa0108240 | AT2G38880.11 | 50.000 | 146 | 62 | 2 | 4 | 149 | 19 | 153 | 1.19e-42 | 146 |
| Msa0108240 | AT2G38880.8 | 50.000 | 146 | 62 | 2 | 4 | 149 | 19 | 153 | 1.19e-42 | 146 |
| Msa0108240 | AT3G53340.3 | 62.745 | 102 | 36 | 1 | 3 | 102 | 26 | 127 | 3.23e-42 | 145 |
| Msa0108240 | AT3G53340.2 | 62.745 | 102 | 36 | 1 | 3 | 102 | 26 | 127 | 3.23e-42 | 145 |
| Msa0108240 | AT2G38880.9 | 65.217 | 92 | 32 | 0 | 4 | 95 | 19 | 110 | 1.11e-41 | 144 |
| Msa0108240 | AT2G38880.10 | 65.217 | 92 | 32 | 0 | 4 | 95 | 19 | 110 | 1.11e-41 | 144 |
| Msa0108240 | AT2G38880.6 | 65.217 | 92 | 32 | 0 | 4 | 95 | 19 | 110 | 1.11e-41 | 144 |
| Msa0108240 | AT2G13570.1 | 63.158 | 95 | 35 | 0 | 5 | 99 | 35 | 129 | 3.24e-40 | 142 |
| Msa0108240 | AT2G47810.1 | 62.500 | 96 | 36 | 0 | 4 | 99 | 49 | 144 | 1.91e-38 | 135 |
| Msa0108240 | AT1G09030.1 | 53.191 | 94 | 44 | 0 | 6 | 99 | 3 | 96 | 1.72e-32 | 119 |
| Msa0108240 | AT5G08190.2 | 31.481 | 108 | 73 | 1 | 1 | 107 | 6 | 113 | 3.56e-14 | 70.1 |
| Msa0108240 | AT5G08190.1 | 29.358 | 109 | 75 | 1 | 1 | 107 | 6 | 114 | 4.60e-14 | 70.1 |
| Msa0108240 | AT5G23090.4 | 28.723 | 94 | 67 | 0 | 1 | 94 | 6 | 99 | 2.56e-13 | 67.8 |
| Msa0108240 | AT5G23090.5 | 28.723 | 94 | 67 | 0 | 1 | 94 | 6 | 99 | 3.03e-13 | 67.4 |
| Msa0108240 | AT5G23090.2 | 28.723 | 94 | 67 | 0 | 1 | 94 | 6 | 99 | 3.03e-13 | 67.4 |
| Msa0108240 | AT5G23090.1 | 28.723 | 94 | 67 | 0 | 1 | 94 | 6 | 99 | 3.03e-13 | 67.4 |
Find 92 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGAATGCTGCTGCATTAA+TGG | 0.212560 | 1_3:+19623992 | None:intergenic |
| CTGAAAATTCAGTTTCGATC+TGG | 0.299869 | 1_3:-19622018 | Msa0108240:intron |
| ACCACAAAACAAGTTTGTTT+TGG | 0.321355 | 1_3:-19622180 | Msa0108240:CDS |
| TGTTATGAAGCTTATGTATT+CGG | 0.321623 | 1_3:+19624210 | None:intergenic |
| TGCTTCGTAACAGGTCTTAT+AGG | 0.329599 | 1_3:-19621800 | Msa0108240:CDS |
| ATACGAATCACATTTGCTAT+TGG | 0.336122 | 1_3:+19624304 | None:intergenic |
| CGGCGCCGCCTTGTGGTGAC+TGG | 0.359544 | 1_3:-19622138 | Msa0108240:CDS |
| CGTTGAAGGTAAAATGTTAA+AGG | 0.361813 | 1_3:+19624085 | None:intergenic |
| TAGGGTTTGTTTCGGTGGTT+TGG | 0.369424 | 1_3:-19621862 | Msa0108240:CDS |
| ACTAACAAACAGATCTTAGA+TGG | 0.370326 | 1_3:+19622108 | None:intergenic |
| TTATGATTATTATTAATTAG+AGG | 0.371549 | 1_3:+19623947 | None:intergenic |
| GAAGATATACTTTGGGCAAT+GGG | 0.375018 | 1_3:-19624136 | Msa0108240:CDS |
| ACATTGTTGGGGTTGATTCA+TGG | 0.379241 | 1_3:-19621936 | Msa0108240:CDS |
| TCATGGATGTGCTTCGTAAC+AGG | 0.384549 | 1_3:-19621809 | Msa0108240:CDS |
| AATCATAATAGCAATGGTTA+TGG | 0.384907 | 1_3:-19623932 | Msa0108240:CDS |
| CTTTGGGCAATGGGGAAACT+AGG | 0.388421 | 1_3:-19624127 | Msa0108240:CDS |
| AGAAAGGGGACGAGGGTGGC+TGG | 0.407099 | 1_3:+19622384 | None:intergenic |
| TTGTCCGTTGTTGCTGCAAA+TGG | 0.411322 | 1_3:-19621756 | Msa0108240:CDS |
| CACTTTCACGGTAACGTTGA+AGG | 0.420587 | 1_3:+19624071 | None:intergenic |
| TTTGGATGTGAGGGAAGAAA+GGG | 0.428633 | 1_3:+19622369 | None:intergenic |
| CAGGTTCACCTTCACTTTCA+CGG | 0.431684 | 1_3:+19624059 | None:intergenic |
| TCACCCGTTAGGGTTTGTTT+CGG | 0.431912 | 1_3:-19621870 | Msa0108240:CDS |
| TGAAAATTCAGTTTCGATCT+GGG | 0.434017 | 1_3:-19622017 | Msa0108240:intron |
| CCACCGAAACAAACCCTAAC+GGG | 0.441848 | 1_3:+19621867 | None:intergenic |
| TTGTTCTCTTATTCCAGCCA+TGG | 0.442842 | 1_3:+19624339 | None:intergenic |
| GATCTACATCGTGAAAGGTT+TGG | 0.445436 | 1_3:+19622351 | None:intergenic |
| TTCGGATACACATTCTTGAA+TGG | 0.445869 | 1_3:+19624228 | None:intergenic |
| GTGAGGGAAGAAAGGGGACG+AGG | 0.455110 | 1_3:+19622376 | None:intergenic |
| TTACAGCAGAAGATATACTT+TGG | 0.459866 | 1_3:-19624144 | Msa0108240:CDS |
| CCCGTTAGGGTTTGTTTCGG+TGG | 0.461432 | 1_3:-19621867 | Msa0108240:CDS |
| GTTTGGATGTGAGGGAAGAA+AGG | 0.462046 | 1_3:+19622368 | None:intergenic |
| TACAGCAGAAGATATACTTT+GGG | 0.465589 | 1_3:-19624143 | Msa0108240:CDS |
| GGGTGTGGGTGTTATCGTGC+TGG | 0.481983 | 1_3:-19621732 | Msa0108240:CDS |
| CAGGTCTTATAGGCTAGAAA+TGG | 0.487181 | 1_3:-19621790 | Msa0108240:CDS |
| TTATTATTAATTAGAGGAAG+TGG | 0.487183 | 1_3:+19623953 | None:intergenic |
| CAGTCACCACAAGGCGGCGC+CGG | 0.491892 | 1_3:+19622139 | None:intergenic |
| CATTTGCTATTGGCATGTAC+TGG | 0.494776 | 1_3:+19624314 | None:intergenic |
| AACCTTTCACGATGTAGATC+CGG | 0.503587 | 1_3:-19622348 | Msa0108240:CDS |
| CGATCGCGCCACCTCGCCGC+CGG | 0.508988 | 1_3:+19622329 | None:intergenic |
| TCCGTTGTTGCTGCAAATGG+TGG | 0.511521 | 1_3:-19621753 | Msa0108240:CDS |
| TTGATTCATGGTCGTAGTGT+TGG | 0.511953 | 1_3:-19621924 | Msa0108240:CDS |
| GATCTGGGTCACCTCAGTGT+TGG | 0.515620 | 1_3:-19622002 | Msa0108240:CDS |
| GTTGCTGCAAATGGTGGGTG+TGG | 0.517508 | 1_3:-19621747 | Msa0108240:CDS |
| TTTGGGCAATGGGGAAACTA+GGG | 0.517845 | 1_3:-19624126 | Msa0108240:CDS |
| AGAAGATATACTTTGGGCAA+TGG | 0.527300 | 1_3:-19624137 | Msa0108240:CDS |
| TGCTGCATTAATGGAAAAGA+TGG | 0.528976 | 1_3:+19624001 | None:intergenic |
| GAAGTGCGTCTAACAGAAGC+AGG | 0.532121 | 1_3:+19624040 | None:intergenic |
| TTGCTGCAAATGGTGGGTGT+GGG | 0.532771 | 1_3:-19621746 | Msa0108240:CDS |
| TTTGTGTGTATCACCCGTTA+GGG | 0.532833 | 1_3:-19621880 | Msa0108240:CDS |
| TGAGGGAAGAAAGGGGACGA+GGG | 0.534453 | 1_3:+19622377 | None:intergenic |
| ACACAAAATCAGCACAAAAG+TGG | 0.541331 | 1_3:+19621896 | None:intergenic |
| AGGTGATTTGAATCCATGGC+TGG | 0.546364 | 1_3:-19624352 | None:intergenic |
| GGTGGCCTTCGCTGCGCCGG+TGG | 0.546801 | 1_3:-19622244 | Msa0108240:CDS |
| ACGAAGCACATCCATGATCA+TGG | 0.550283 | 1_3:+19621815 | None:intergenic |
| AATAATAATCATAATAGCAA+TGG | 0.551891 | 1_3:-19623938 | Msa0108240:CDS |
| CAGTGTTGGCTCCGCCGCAG+TGG | 0.552258 | 1_3:-19621988 | Msa0108240:CDS |
| TCGTGAAAGGTTTGGATGTG+AGG | 0.552566 | 1_3:+19622359 | None:intergenic |
| TCTTCCAACACTAGATCCTC+CGG | 0.561854 | 1_3:-19622280 | Msa0108240:CDS |
| CGCCGGATCTACATCGTGAA+AGG | 0.563920 | 1_3:+19622346 | None:intergenic |
| CGTGAAAGGTTTGGATGTGA+GGG | 0.564504 | 1_3:+19622360 | None:intergenic |
| GGTGGTGGCCTTCGCTGCGC+CGG | 0.569474 | 1_3:-19622247 | Msa0108240:CDS |
| GCCACCACCTCAAAACCCAC+CGG | 0.571528 | 1_3:+19622261 | None:intergenic |
| ATGTAGATCCGGCGGCGAGG+TGG | 0.576123 | 1_3:-19622337 | Msa0108240:CDS |
| GGAGGATCTAGTGTTGGAAG+AGG | 0.578915 | 1_3:+19622282 | None:intergenic |
| GTATTGCTCCTCCATGATCA+TGG | 0.581300 | 1_3:-19621826 | Msa0108240:CDS |
| CCCACCATTTGCAGCAACAA+CGG | 0.584840 | 1_3:+19621752 | None:intergenic |
| CCGTTGTTGCTGCAAATGGT+GGG | 0.585744 | 1_3:-19621752 | Msa0108240:CDS |
| GGGAAGAAAGGGGACGAGGG+TGG | 0.592785 | 1_3:+19622380 | None:intergenic |
| GGTACAAAACTAGCAGAAGA+AGG | 0.597542 | 1_3:+19623860 | None:intergenic |
| TTGGATGTGAGGGAAGAAAG+GGG | 0.599274 | 1_3:+19622370 | None:intergenic |
| ACCACCGAAACAAACCCTAA+CGG | 0.611698 | 1_3:+19621866 | None:intergenic |
| CCCACCGGAGGATCTAGTGT+TGG | 0.616945 | 1_3:+19622276 | None:intergenic |
| CCGCCTTGTGGTGACTGGAG+TGG | 0.620882 | 1_3:-19622133 | Msa0108240:CDS |
| ATACATAAGCTTCATAACAT+CGG | 0.626222 | 1_3:-19624206 | Msa0108240:CDS |
| TATCGTGCTGGCAGTGCTCG+TGG | 0.626789 | 1_3:-19621720 | Msa0108240:CDS |
| TCCAACACTAGATCCTCCGG+TGG | 0.630816 | 1_3:-19622277 | Msa0108240:CDS |
| CAACGTTACCGTGAAAGTGA+AGG | 0.630890 | 1_3:-19624067 | Msa0108240:CDS |
| GAGGATCTAGTGTTGGAAGA+GGG | 0.632202 | 1_3:+19622283 | None:intergenic |
| GAGCCACTCCAGTCACCACA+AGG | 0.637789 | 1_3:+19622130 | None:intergenic |
| AAGATATACTTTGGGCAATG+GGG | 0.639982 | 1_3:-19624135 | Msa0108240:CDS |
| GAGGAGCAATACAACGATGA+GGG | 0.643578 | 1_3:+19621837 | None:intergenic |
| TGCATTAATGGAAAAGATGG+AGG | 0.643868 | 1_3:+19624004 | None:intergenic |
| ACCACCTCAAAACCCACCGG+AGG | 0.654836 | 1_3:+19622264 | None:intergenic |
| CCAACACTAGATCCTCCGGT+GGG | 0.667576 | 1_3:-19622276 | Msa0108240:CDS |
| GGAGGAGCAATACAACGATG+AGG | 0.670498 | 1_3:+19621836 | None:intergenic |
| ACAGAACTTAACCACTGCGG+CGG | 0.673947 | 1_3:+19621977 | None:intergenic |
| CTTTCACGATGTAGATCCGG+CGG | 0.680857 | 1_3:-19622345 | Msa0108240:CDS |
| ACGATGTAGATCCGGCGGCG+AGG | 0.715233 | 1_3:-19622340 | Msa0108240:CDS |
| CCACTCCAGTCACCACAAGG+CGG | 0.736881 | 1_3:+19622133 | None:intergenic |
| AAGCACATCCATGATCATGG+AGG | 0.759087 | 1_3:+19621818 | None:intergenic |
| CTGCGGCGGAGCCAACACTG+AGG | 0.766744 | 1_3:+19621991 | None:intergenic |
| AGAACAGAACTTAACCACTG+CGG | 0.787402 | 1_3:+19621974 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATGATTATTATTAATTAG+AGG | + | chr1_3:19622097-19622116 | None:intergenic | 10.0% |
| !!! | TTTTTTAATGGAAAATTTTA+TGG | - | chr1_3:19622601-19622620 | Msa0108240:intron | 10.0% |
| !!! | ATATTTATGAATTTTAACTA+GGG | + | chr1_3:19623028-19623047 | None:intergenic | 10.0% |
| !! | TTATTATTTAGAGATATTAA+GGG | + | chr1_3:19623151-19623170 | None:intergenic | 10.0% |
| !! | TTTATTATTTAGAGATATTA+AGG | + | chr1_3:19623152-19623171 | None:intergenic | 10.0% |
| !! | TTAAATAAAATCATAAAATC+GGG | - | chr1_3:19623184-19623203 | Msa0108240:intron | 10.0% |
| !!! | TAATTTATATTTTTAGTGTT+TGG | - | chr1_3:19623480-19623499 | Msa0108240:intron | 10.0% |
| !!! | TAAATTTCATCTTAAAATTT+TGG | + | chr1_3:19623512-19623531 | None:intergenic | 10.0% |
| !! | AATAATAATCATAATAGCAA+TGG | - | chr1_3:19622103-19622122 | Msa0108240:intron | 15.0% |
| !! | TACATTGACATAATAATATA+TGG | - | chr1_3:19622459-19622478 | Msa0108240:intron | 15.0% |
| !!! | GATATTTATGAATTTTAACT+AGG | + | chr1_3:19623029-19623048 | None:intergenic | 15.0% |
| !! | TTATTATTAATTAGAGGAAG+TGG | + | chr1_3:19622091-19622110 | None:intergenic | 20.0% |
| !! | AAAATGTAAAAAATGTCTGT+TGG | - | chr1_3:19622482-19622501 | Msa0108240:intron | 20.0% |
| !! | TATACACCATTAGTAAATTA+GGG | + | chr1_3:19622577-19622596 | None:intergenic | 20.0% |
| !!! | AGTTATTTTGTAAGAATAGT+AGG | + | chr1_3:19623103-19623122 | None:intergenic | 20.0% |
| !! | CCTGTATACAAAATATATTT+GGG | + | chr1_3:19623423-19623442 | None:intergenic | 20.0% |
| !!! | CCAAATATATTTTGTATACA+GGG | - | chr1_3:19623421-19623440 | Msa0108240:intron | 20.0% |
| !! | TTAAAAAAAATTACTACCTC+CGG | + | chr1_3:19623448-19623467 | None:intergenic | 20.0% |
| !!! | GAGGTAGTAATTTTTTTTAA+GGG | - | chr1_3:19623448-19623467 | Msa0108240:intron | 20.0% |
| !!! | TCATCTTAAAATTTTGGATT+TGG | + | chr1_3:19623506-19623525 | None:intergenic | 20.0% |
| !!! | TCTTTATCATGATTATTTCT+CGG | - | chr1_3:19623543-19623562 | Msa0108240:intron | 20.0% |
| !! | TAGTTAAAAGGAAAATTCTA+TGG | + | chr1_3:19623588-19623607 | None:intergenic | 20.0% |
| ! | TGTTATGAAGCTTATGTATT+CGG | + | chr1_3:19621834-19621853 | None:intergenic | 25.0% |
| ! | ATACATAAGCTTCATAACAT+CGG | - | chr1_3:19621835-19621854 | Msa0108240:CDS | 25.0% |
| ! | AATCATAATAGCAATGGTTA+TGG | - | chr1_3:19622109-19622128 | Msa0108240:intron | 25.0% |
| !!! | TATGGTTTTGATTTTGATCA+AGG | - | chr1_3:19622127-19622146 | Msa0108240:CDS | 25.0% |
| !!! | ATGGTTTTGATTTTGATCAA+GGG | - | chr1_3:19622128-19622147 | Msa0108240:CDS | 25.0% |
| ! | AGAAAACAACAATCAAAGTT+CGG | + | chr1_3:19622205-19622224 | None:intergenic | 25.0% |
| ! | ATACACCATTAGTAAATTAG+GGG | + | chr1_3:19622576-19622595 | None:intergenic | 25.0% |
| ! | CTATACACCATTAGTAAATT+AGG | + | chr1_3:19622578-19622597 | None:intergenic | 25.0% |
| !!! | GGTGTATAGTGTTTTTTTAA+TGG | - | chr1_3:19622589-19622608 | Msa0108240:intron | 25.0% |
| ! | TATGAGTAATAGTAATGGTT+GGG | + | chr1_3:19623051-19623070 | None:intergenic | 25.0% |
| ! | AATGAATAAATGAAGAAGTG+TGG | - | chr1_3:19623250-19623269 | Msa0108240:intron | 25.0% |
| !!! | CTTCATAAACCCTTATTTTT+GGG | - | chr1_3:19623308-19623327 | Msa0108240:intron | 25.0% |
| !! | CCCAAATATATTTTGTATAC+AGG | - | chr1_3:19623420-19623439 | Msa0108240:intron | 25.0% |
| ! | CCCTGTATACAAAATATATT+TGG | + | chr1_3:19623424-19623443 | None:intergenic | 25.0% |
| !!! | GGAGGTAGTAATTTTTTTTA+AGG | - | chr1_3:19623447-19623466 | Msa0108240:intron | 25.0% |
| ! | AAATTGAATGGGTAGTTAAA+AGG | + | chr1_3:19623600-19623619 | None:intergenic | 25.0% |
| !!! | AACAAGTTTGTTTTGGTTTT+TGG | - | chr1_3:19623868-19623887 | Msa0108240:CDS | 25.0% |
| !! | AGATTTGTTCATGATTCAAT+GGG | - | chr1_3:19623997-19624016 | Msa0108240:CDS | 25.0% |
| !! | ATACGAATCACATTTGCTAT+TGG | + | chr1_3:19621740-19621759 | None:intergenic | 30.0% |
| TTACAGCAGAAGATATACTT+TGG | - | chr1_3:19621897-19621916 | Msa0108240:CDS | 30.0% | |
| TACAGCAGAAGATATACTTT+GGG | - | chr1_3:19621898-19621917 | Msa0108240:CDS | 30.0% | |
| CGTTGAAGGTAAAATGTTAA+AGG | + | chr1_3:19621959-19621978 | None:intergenic | 30.0% | |
| TTATGATTATCACGTTTGAG+AGG | + | chr1_3:19622229-19622248 | None:intergenic | 30.0% | |
| TTATATTCAAACGCATGCAT+GGG | - | chr1_3:19622344-19622363 | Msa0108240:CDS | 30.0% | |
| TTAGTAAATTAGGGGAAAAG+TGG | + | chr1_3:19622568-19622587 | None:intergenic | 30.0% | |
| ! | CTTTTCCCCTAATTTACTAA+TGG | - | chr1_3:19622568-19622587 | Msa0108240:intron | 30.0% |
| TCTTAAGTGTTACACTTTGT+GGG | + | chr1_3:19622808-19622827 | None:intergenic | 30.0% | |
| ATCTTAAGTGTTACACTTTG+TGG | + | chr1_3:19622809-19622828 | None:intergenic | 30.0% | |
| ! | TACTGGTACTATTTTATCGT+TGG | + | chr1_3:19622865-19622884 | None:intergenic | 30.0% |
| GTATGAGTAATAGTAATGGT+TGG | + | chr1_3:19623052-19623071 | None:intergenic | 30.0% | |
| TGGTGTATGAGTAATAGTAA+TGG | + | chr1_3:19623056-19623075 | None:intergenic | 30.0% | |
| TGTAAGAATAGTAGGAACTT+GGG | + | chr1_3:19623095-19623114 | None:intergenic | 30.0% | |
| TTGTAAGAATAGTAGGAACT+TGG | + | chr1_3:19623096-19623115 | None:intergenic | 30.0% | |
| !! | CATTTTGGTAATTTTGGGTA+TGG | + | chr1_3:19623128-19623147 | None:intergenic | 30.0% |
| !!! | AAGGGCATTTTGGTAATTTT+GGG | + | chr1_3:19623133-19623152 | None:intergenic | 30.0% |
| !!! | TAAGGGCATTTTGGTAATTT+TGG | + | chr1_3:19623134-19623153 | None:intergenic | 30.0% |
| !!! | TAGAGATATTAAGGGCATTT+TGG | + | chr1_3:19623143-19623162 | None:intergenic | 30.0% |
| AATTATAAAGTGAGAAGACG+AGG | - | chr1_3:19623285-19623304 | Msa0108240:intron | 30.0% | |
| !!! | GCTTCATAAACCCTTATTTT+TGG | - | chr1_3:19623307-19623326 | Msa0108240:intron | 30.0% |
| CATCTCTAACCCAAAAATAA+GGG | + | chr1_3:19623320-19623339 | None:intergenic | 30.0% | |
| TCATCTCTAACCCAAAAATA+AGG | + | chr1_3:19623321-19623340 | None:intergenic | 30.0% | |
| ! | TATATTTTGTATACAGGGAC+CGG | - | chr1_3:19623426-19623445 | Msa0108240:intron | 30.0% |
| !!! | GTAATTTTTTTTAAGGGCTG+AGG | - | chr1_3:19623454-19623473 | Msa0108240:intron | 30.0% |
| AAGCGATCTGTAAATTGAAT+GGG | + | chr1_3:19623611-19623630 | None:intergenic | 30.0% | |
| AAAGCGATCTGTAAATTGAA+TGG | + | chr1_3:19623612-19623631 | None:intergenic | 30.0% | |
| !! | AAAAGTTTGTTTCTAGAGAG+AGG | + | chr1_3:19623637-19623656 | None:intergenic | 30.0% |
| !! | ACCACAAAACAAGTTTGTTT+TGG | - | chr1_3:19623861-19623880 | Msa0108240:intron | 30.0% |
| !!! | ACCAAAACAAACTTGTTTTG+TGG | + | chr1_3:19623865-19623884 | None:intergenic | 30.0% |
| !!! | GTTTGTTTTGGTTTTTGGTT+TGG | - | chr1_3:19623873-19623892 | Msa0108240:CDS | 30.0% |
| ACTAACAAACAGATCTTAGA+TGG | + | chr1_3:19623936-19623955 | None:intergenic | 30.0% | |
| ! | AGATCTGTTTGTTAGTTATG+TGG | - | chr1_3:19623940-19623959 | Msa0108240:CDS | 30.0% |
| CATTGAATCATGAACAAATC+TGG | + | chr1_3:19623998-19624017 | None:intergenic | 30.0% | |
| ! | CAGATTTGTTCATGATTCAA+TGG | - | chr1_3:19623996-19624015 | Msa0108240:CDS | 30.0% |
| TGAAAATTCAGTTTCGATCT+GGG | - | chr1_3:19624024-19624043 | Msa0108240:CDS | 30.0% | |
| !!! | TTTCGAGTTTTCAACATTGT+TGG | - | chr1_3:19624092-19624111 | Msa0108240:CDS | 30.0% |
| !! | TTCGAGTTTTCAACATTGTT+GGG | - | chr1_3:19624093-19624112 | Msa0108240:CDS | 30.0% |
| TTCGGATACACATTCTTGAA+TGG | + | chr1_3:19621816-19621835 | None:intergenic | 35.0% | |
| AGAAGATATACTTTGGGCAA+TGG | - | chr1_3:19621904-19621923 | Msa0108240:CDS | 35.0% | |
| GAAGATATACTTTGGGCAAT+GGG | - | chr1_3:19621905-19621924 | Msa0108240:CDS | 35.0% | |
| AAGATATACTTTGGGCAATG+GGG | - | chr1_3:19621906-19621925 | Msa0108240:CDS | 35.0% | |
| TGCATTAATGGAAAAGATGG+AGG | + | chr1_3:19622040-19622059 | None:intergenic | 35.0% | |
| TGCTGCATTAATGGAAAAGA+TGG | + | chr1_3:19622043-19622062 | None:intergenic | 35.0% | |
| !! | GATCAAGGGTTTTATAGAGA+TGG | - | chr1_3:19622142-19622161 | Msa0108240:CDS | 35.0% |
| GTTATATTCAAACGCATGCA+TGG | - | chr1_3:19622343-19622362 | Msa0108240:CDS | 35.0% | |
| TATATTCAAACGCATGCATG+GGG | - | chr1_3:19622345-19622364 | Msa0108240:CDS | 35.0% | |
| ATGCCATTATACAAAGAGTG+GGG | + | chr1_3:19622693-19622712 | None:intergenic | 35.0% | |
| GATGCCATTATACAAAGAGT+GGG | + | chr1_3:19622694-19622713 | None:intergenic | 35.0% | |
| TGATGCCATTATACAAAGAG+TGG | + | chr1_3:19622695-19622714 | None:intergenic | 35.0% | |
| TGTTACGCTTAAAACAAGGT+AGG | + | chr1_3:19622784-19622803 | None:intergenic | 35.0% | |
| CTTAAGTGTTACACTTTGTG+GGG | + | chr1_3:19622807-19622826 | None:intergenic | 35.0% | |
| !! | TTTTAACTAGGGAGCTTCTA+CGG | + | chr1_3:19623017-19623036 | None:intergenic | 35.0% |
| TGGGGTAATTAATGGAATAG+TGG | + | chr1_3:19623076-19623095 | None:intergenic | 35.0% | |
| TAGGAACTTGGGGTAATTAA+TGG | + | chr1_3:19623084-19623103 | None:intergenic | 35.0% | |
| GTAAGAATAGTAGGAACTTG+GGG | + | chr1_3:19623094-19623113 | None:intergenic | 35.0% | |
| ! | GAATAAATGAAGAAGTGTGG+AGG | - | chr1_3:19623253-19623272 | Msa0108240:intron | 35.0% |
| !!! | GTTTTTGGTTTGGTCTTTTC+CGG | - | chr1_3:19623883-19623902 | Msa0108240:CDS | 35.0% |
| ! | GTTTGTTAGTTATGTGGTTG+TGG | - | chr1_3:19623946-19623965 | Msa0108240:CDS | 35.0% |
| CTGAAAATTCAGTTTCGATC+TGG | - | chr1_3:19624023-19624042 | Msa0108240:CDS | 35.0% | |
| ! | TCGAGTTTTCAACATTGTTG+GGG | - | chr1_3:19624094-19624113 | Msa0108240:CDS | 35.0% |
| ACACAAAATCAGCACAAAAG+TGG | + | chr1_3:19624148-19624167 | None:intergenic | 35.0% | |
| !! | CATTTGCTATTGGCATGTAC+TGG | + | chr1_3:19621730-19621749 | None:intergenic | 40.0% |
| ! | AATGGTTTCTTTTGCGTCGT+CGG | + | chr1_3:19621798-19621817 | None:intergenic | 40.0% |
| GAAGAATGCTGCTGCATTAA+TGG | + | chr1_3:19622052-19622071 | None:intergenic | 40.0% | |
| !! | CAAGGGTTTTATAGAGATGG+TGG | - | chr1_3:19622145-19622164 | Msa0108240:CDS | 40.0% |
| GGTACAAAACTAGCAGAAGA+AGG | + | chr1_3:19622184-19622203 | None:intergenic | 40.0% | |
| GTGCTAGTTGCATGCATATA+TGG | - | chr1_3:19622273-19622292 | Msa0108240:CDS | 40.0% | |
| ACACCCCACTCTTTGTATAA+TGG | - | chr1_3:19622687-19622706 | Msa0108240:intron | 40.0% | |
| TTGCAACATCTTGGACTTAC+TGG | + | chr1_3:19622882-19622901 | None:intergenic | 40.0% | |
| TAGCAATGCTTGCAACATCT+TGG | + | chr1_3:19622891-19622910 | None:intergenic | 40.0% | |
| ! | GTGATTTGGCAAGTTTGACT+TGG | + | chr1_3:19623366-19623385 | None:intergenic | 40.0% |
| ! | TGCACACTAAGAGTGTGATT+TGG | + | chr1_3:19623380-19623399 | None:intergenic | 40.0% |
| TTTGGATGTGAGGGAAGAAA+GGG | + | chr1_3:19623675-19623694 | None:intergenic | 40.0% | |
| GATCTACATCGTGAAAGGTT+TGG | + | chr1_3:19623693-19623712 | None:intergenic | 40.0% | |
| AACCTTTCACGATGTAGATC+CGG | - | chr1_3:19623693-19623712 | Msa0108240:intron | 40.0% | |
| ACAACCACACAAAAAACCAC+CGG | + | chr1_3:19623816-19623835 | None:intergenic | 40.0% | |
| ! | TCATGAACAAATCTGGAACG+AGG | + | chr1_3:19623991-19624010 | None:intergenic | 40.0% |
| AGAACAGAACTTAACCACTG+CGG | + | chr1_3:19624070-19624089 | None:intergenic | 40.0% | |
| ! | ACATTGTTGGGGTTGATTCA+TGG | - | chr1_3:19624105-19624124 | Msa0108240:CDS | 40.0% |
| TTGATTCATGGTCGTAGTGT+TGG | - | chr1_3:19624117-19624136 | Msa0108240:CDS | 40.0% | |
| ! | TTTTGTGTGTATCACCCGTT+AGG | - | chr1_3:19624160-19624179 | Msa0108240:CDS | 40.0% |
| TTTGTGTGTATCACCCGTTA+GGG | - | chr1_3:19624161-19624180 | Msa0108240:CDS | 40.0% | |
| ! | TGCTTCGTAACAGGTCTTAT+AGG | - | chr1_3:19624241-19624260 | Msa0108240:CDS | 40.0% |
| ! | CAGGTCTTATAGGCTAGAAA+TGG | - | chr1_3:19624251-19624270 | Msa0108240:CDS | 40.0% |
| ! | TCGGAGATTTTTGCATGCGA+CGG | + | chr1_3:19621779-19621798 | None:intergenic | 45.0% |
| TTTGGGCAATGGGGAAACTA+GGG | - | chr1_3:19621915-19621934 | Msa0108240:CDS | 45.0% | |
| CACTTTCACGGTAACGTTGA+AGG | + | chr1_3:19621973-19621992 | None:intergenic | 45.0% | |
| CAACGTTACCGTGAAAGTGA+AGG | - | chr1_3:19621974-19621993 | Msa0108240:CDS | 45.0% | |
| CAGGTTCACCTTCACTTTCA+CGG | + | chr1_3:19621985-19622004 | None:intergenic | 45.0% | |
| ! | GGGGTGTTACGCTTAAAACA+AGG | + | chr1_3:19622788-19622807 | None:intergenic | 45.0% |
| ! | ATTTTGTATACAGGGACCGG+AGG | - | chr1_3:19623429-19623448 | Msa0108240:intron | 45.0% |
| TTGGATGTGAGGGAAGAAAG+GGG | + | chr1_3:19623674-19623693 | None:intergenic | 45.0% | |
| GTTTGGATGTGAGGGAAGAA+AGG | + | chr1_3:19623676-19623695 | None:intergenic | 45.0% | |
| CGTGAAAGGTTTGGATGTGA+GGG | + | chr1_3:19623684-19623703 | None:intergenic | 45.0% | |
| TCGTGAAAGGTTTGGATGTG+AGG | + | chr1_3:19623685-19623704 | None:intergenic | 45.0% | |
| ! | GAGGATCTAGTGTTGGAAGA+GGG | + | chr1_3:19623761-19623780 | None:intergenic | 45.0% |
| TCTTCCAACACTAGATCCTC+CGG | - | chr1_3:19623761-19623780 | Msa0108240:intron | 45.0% | |
| ! | TCACCCGTTAGGGTTTGTTT+CGG | - | chr1_3:19624171-19624190 | Msa0108240:CDS | 45.0% |
| ACCACCGAAACAAACCCTAA+CGG | + | chr1_3:19624178-19624197 | None:intergenic | 45.0% | |
| ! | TAGGGTTTGTTTCGGTGGTT+TGG | - | chr1_3:19624179-19624198 | Msa0108240:CDS | 45.0% |
| GAGGAGCAATACAACGATGA+GGG | + | chr1_3:19624207-19624226 | None:intergenic | 45.0% | |
| GTATTGCTCCTCCATGATCA+TGG | - | chr1_3:19624215-19624234 | Msa0108240:CDS | 45.0% | |
| AAGCACATCCATGATCATGG+AGG | + | chr1_3:19624226-19624245 | None:intergenic | 45.0% | |
| ACGAAGCACATCCATGATCA+TGG | + | chr1_3:19624229-19624248 | None:intergenic | 45.0% | |
| TCATGGATGTGCTTCGTAAC+AGG | - | chr1_3:19624232-19624251 | Msa0108240:CDS | 45.0% | |
| TTGTCCGTTGTTGCTGCAAA+TGG | - | chr1_3:19624285-19624304 | Msa0108240:CDS | 45.0% | |
| !! | ATTAAATAAAATCATAAAAT+CGG | - | chr1_3:19623183-19623202 | Msa0108240:intron | 5.0% |
| CTTTGGGCAATGGGGAAACT+AGG | - | chr1_3:19621914-19621933 | Msa0108240:CDS | 50.0% | |
| GAAGTGCGTCTAACAGAAGC+AGG | + | chr1_3:19622004-19622023 | None:intergenic | 50.0% | |
| CTTTCACGATGTAGATCCGG+CGG | - | chr1_3:19623696-19623715 | Msa0108240:intron | 50.0% | |
| ! | GGAGGATCTAGTGTTGGAAG+AGG | + | chr1_3:19623762-19623781 | None:intergenic | 50.0% |
| ACAGAACTTAACCACTGCGG+CGG | + | chr1_3:19624067-19624086 | None:intergenic | 50.0% | |
| CCACCGAAACAAACCCTAAC+GGG | + | chr1_3:19624177-19624196 | None:intergenic | 50.0% | |
| GGAGGAGCAATACAACGATG+AGG | + | chr1_3:19624208-19624227 | None:intergenic | 50.0% | |
| TCCGTTGTTGCTGCAAATGG+TGG | - | chr1_3:19624288-19624307 | Msa0108240:CDS | 50.0% | |
| CCCACCATTTGCAGCAACAA+CGG | + | chr1_3:19624292-19624311 | None:intergenic | 50.0% | |
| CCGTTGTTGCTGCAAATGGT+GGG | - | chr1_3:19624289-19624308 | Msa0108240:CDS | 50.0% | |
| !! | TTGCTGCAAATGGTGGGTGT+GGG | - | chr1_3:19624295-19624314 | Msa0108240:CDS | 50.0% |
| TGAGGGAAGAAAGGGGACGA+GGG | + | chr1_3:19623667-19623686 | None:intergenic | 55.0% | |
| CGCCGGATCTACATCGTGAA+AGG | + | chr1_3:19623698-19623717 | None:intergenic | 55.0% | |
| TCCAACACTAGATCCTCCGG+TGG | - | chr1_3:19623764-19623783 | Msa0108240:intron | 55.0% | |
| CCAACACTAGATCCTCCGGT+GGG | - | chr1_3:19623765-19623784 | Msa0108240:intron | 55.0% | |
| !! | AGATCCTCCGGTGGGTTTTG+AGG | - | chr1_3:19623773-19623792 | Msa0108240:intron | 55.0% |
| !!! | TGCGCCGGTGGTTTTTTGTG+TGG | - | chr1_3:19623809-19623828 | Msa0108240:intron | 55.0% |
| TGGAACGAGGAACCACCACT+GGG | + | chr1_3:19623978-19623997 | None:intergenic | 55.0% | |
| GATCTGGGTCACCTCAGTGT+TGG | - | chr1_3:19624039-19624058 | Msa0108240:CDS | 55.0% | |
| ! | CCCGTTAGGGTTTGTTTCGG+TGG | - | chr1_3:19624174-19624193 | Msa0108240:CDS | 55.0% |
| !! | GTTGCTGCAAATGGTGGGTG+TGG | - | chr1_3:19624294-19624313 | Msa0108240:CDS | 55.0% |
| GGGAGCTTCTACGGTGCAGT+CGG | + | chr1_3:19623008-19623027 | None:intergenic | 60.0% | |
| GTGAGGGAAGAAAGGGGACG+AGG | + | chr1_3:19623668-19623687 | None:intergenic | 60.0% | |
| CCCACCGGAGGATCTAGTGT+TGG | + | chr1_3:19623768-19623787 | None:intergenic | 60.0% | |
| !!! | TCCTCCGGTGGGTTTTGAGG+TGG | - | chr1_3:19623776-19623795 | Msa0108240:intron | 60.0% |
| ACCACCTCAAAACCCACCGG+AGG | + | chr1_3:19623780-19623799 | None:intergenic | 60.0% | |
| !!! | TCCGGTGGGTTTTGAGGTGG+TGG | - | chr1_3:19623779-19623798 | Msa0108240:intron | 60.0% |
| GCCACCACCTCAAAACCCAC+CGG | + | chr1_3:19623783-19623802 | None:intergenic | 60.0% | |
| AAAAACCACCGGCGCAGCGA+AGG | + | chr1_3:19623805-19623824 | None:intergenic | 60.0% | |
| CCACTCCAGTCACCACAAGG+CGG | + | chr1_3:19623911-19623930 | None:intergenic | 60.0% | |
| GAGCCACTCCAGTCACCACA+AGG | + | chr1_3:19623914-19623933 | None:intergenic | 60.0% | |
| TGGTTGTGGCTCGTTCCCAG+TGG | - | chr1_3:19623960-19623979 | Msa0108240:CDS | 60.0% | |
| TTGTGGCTCGTTCCCAGTGG+TGG | - | chr1_3:19623963-19623982 | Msa0108240:CDS | 60.0% | |
| CTGGAACGAGGAACCACCAC+TGG | + | chr1_3:19623979-19623998 | None:intergenic | 60.0% | |
| ! | GGGTGTGGGTGTTATCGTGC+TGG | - | chr1_3:19624309-19624328 | Msa0108240:CDS | 60.0% |
| ! | TATCGTGCTGGCAGTGCTCG+TGG | - | chr1_3:19624321-19624340 | Msa0108240:CDS | 60.0% |
| AGAAAGGGGACGAGGGTGGC+TGG | + | chr1_3:19623660-19623679 | None:intergenic | 65.0% | |
| GGGAAGAAAGGGGACGAGGG+TGG | + | chr1_3:19623664-19623683 | None:intergenic | 65.0% | |
| ACGATGTAGATCCGGCGGCG+AGG | - | chr1_3:19623701-19623720 | Msa0108240:intron | 65.0% | |
| ATGTAGATCCGGCGGCGAGG+TGG | - | chr1_3:19623704-19623723 | Msa0108240:intron | 65.0% | |
| ! | TCTTTTCCGGCGCCGCCTTG+TGG | - | chr1_3:19623896-19623915 | Msa0108240:CDS | 65.0% |
| CCGCCTTGTGGTGACTGGAG+TGG | - | chr1_3:19623908-19623927 | Msa0108240:CDS | 65.0% | |
| CAGTCACCACAAGGCGGCGC+CGG | + | chr1_3:19623905-19623924 | None:intergenic | 70.0% | |
| CTGCGGCGGAGCCAACACTG+AGG | + | chr1_3:19624053-19624072 | None:intergenic | 70.0% | |
| !! | CAGTGTTGGCTCCGCCGCAG+TGG | - | chr1_3:19624053-19624072 | Msa0108240:CDS | 70.0% |
| ! | GGTGGTGGCCTTCGCTGCGC+CGG | - | chr1_3:19623794-19623813 | Msa0108240:intron | 75.0% |
| CGGCGCCGCCTTGTGGTGAC+TGG | - | chr1_3:19623903-19623922 | Msa0108240:CDS | 75.0% | |
| ! | CGATCGCGCCACCTCGCCGC+CGG | + | chr1_3:19623715-19623734 | None:intergenic | 80.0% |
| ! | GGTGGCCTTCGCTGCGCCGG+TGG | - | chr1_3:19623797-19623816 | Msa0108240:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 19621704 | 19624359 | 19621704 | ID=Msa0108240;Name=Msa0108240 |
| chr1_3 | mRNA | 19621704 | 19624359 | 19621704 | ID=Msa0108240-mRNA-1;Parent=Msa0108240;Name=Msa0108240-mRNA-1;_AED=0.23;_eAED=0.33;_QI=0|0|0|0.66|1|1|3|0|374 |
| chr1_3 | exon | 19623865 | 19624359 | 19623865 | ID=Msa0108240-mRNA-1:exon:7097;Parent=Msa0108240-mRNA-1 |
| chr1_3 | exon | 19622114 | 19622418 | 19622114 | ID=Msa0108240-mRNA-1:exon:7096;Parent=Msa0108240-mRNA-1 |
| chr1_3 | exon | 19621704 | 19622028 | 19621704 | ID=Msa0108240-mRNA-1:exon:7095;Parent=Msa0108240-mRNA-1 |
| chr1_3 | CDS | 19623865 | 19624359 | 19623865 | ID=Msa0108240-mRNA-1:cds;Parent=Msa0108240-mRNA-1 |
| chr1_3 | CDS | 19622114 | 19622418 | 19622114 | ID=Msa0108240-mRNA-1:cds;Parent=Msa0108240-mRNA-1 |
| chr1_3 | CDS | 19621704 | 19622028 | 19621704 | ID=Msa0108240-mRNA-1:cds;Parent=Msa0108240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
