AlfalfaGEDB | Msa0108720

M. sativa cultivar zhongmu-4 / Msa0108720

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0108720	sp\|Q8L3W1\|VRN1_ARATH	25.078	319	184	9	44	309	21	337	2.04e-14	79.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0108720	A0A396JPU6	60.850	447	52	9	415	800	14	398	1.50e-150	456
Msa0108720	A0A396JPU6	76.716	408	63	7	37	426	11	404	0.0	591

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TFs/TRs:

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Gene ID	Type	Classification
Msa0108720	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0108720	MtrunA17_Chr1g0163201	76.716	408	63	7	37	426	11	404	0.0	591
Msa0108720	MtrunA17_Chr1g0163201	60.850	447	52	9	415	800	14	398	2.89e-154	456
Msa0108720	MtrunA17_Chr1g0163181	67.816	435	67	9	44	422	20	437	0.0	552
Msa0108720	MtrunA17_Chr1g0163181	64.350	446	63	10	421	800	20	435	1.41e-174	509
Msa0108720	MtrunA17_Chr1g0163151	70.796	226	53	3	199	415	1	222	5.57e-105	322
Msa0108720	MtrunA17_Chr1g0163151	57.762	277	53	3	528	795	1	222	1.47e-95	297
Msa0108720	MtrunA17_Chr1g0163111	62.724	279	45	7	528	796	1	230	6.52e-102	314
Msa0108720	MtrunA17_Chr1g0163111	66.387	238	52	4	199	416	1	230	1.33e-98	305
Msa0108720	MtrunA17_Chr1g0163251	51.163	301	90	7	44	317	20	290	2.79e-82	268
Msa0108720	MtrunA17_Chr1g0163251	38.095	378	127	10	421	714	20	374	3.37e-56	198

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0108720	AT3G18990.2	25.078	319	184	9	44	309	21	337	1.28e-15	80.1
Msa0108720	AT3G18990.1	25.078	319	184	9	44	309	21	337	2.08e-15	79.0

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Find 149 sgRNAs with CRISPR-Local

Find 798 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACCTAGTAATTTCTTT+GGG	0.357748	1_3:+20348213	None:intergenic
AAAGAATGCAAAGTGGAGAT+TGG	0.426567	1_3:-20347319	Msa0108720:CDS
AAAGAATGCAAAGTGGAGAT+TGG	0.431700	1_3:-20334789	Msa0108720:CDS
AAAGAATGCAAAGTGGAGAT+TGG	0.431700	1_3:-20337795	Msa0108720:CDS
AAATATTGTGGAGTTGAAAA+TGG	0.256652	1_3:-20337901	Msa0108720:CDS
AAATATTGTGGAGTTGAAAA+TGG	0.256652	1_3:-20347425	Msa0108720:CDS
AAATGCCAAAGCAAGCTAAA+AGG	0.432567	1_3:-20339744	Msa0108720:CDS
AAATGGCAAAGCAAGCTCAA+AGG	0.625671	1_3:-20349160	Msa0108720:CDS
AACAGCTTCATTAACAGCTT+CGG	0.400694	1_3:+20348624	None:intergenic
AACGACACTGCCATGTCTGT+TGG	0.574077	1_3:+20350404	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTGAAAGAATAGGTTCAA+TGG	-	chr1_3:20335014-20335033	Msa0108720:intron	30.0%
AGTTGTGATGATTCACAAAT+AGG	-	chr1_3:20335161-20335180	Msa0108720:intron	30.0%
TATGTGGAGAAATATTGGAA+AGG	-	chr1_3:20335622-20335641	Msa0108720:intron	30.0%
TTTGCAAAGCCTTTCAAATA+TGG	-	chr1_3:20335748-20335767	Msa0108720:intron	30.0%
ACTACCAAACAAAATTTCTC+AGG	-	chr1_3:20336084-20336103	Msa0108720:intron	30.0%
CTACCAAACAAAATTTCTCA+GGG	-	chr1_3:20336085-20336104	Msa0108720:intron	30.0%
ATTACTCATTTGGTAGACTA+AGG	-	chr1_3:20336135-20336154	Msa0108720:intron	30.0%
GAAACACCTAGTAATTTCTT+TGG	+	chr1_3:20336973-20336992	None:intergenic	30.0%
TCATAGTAGTGTTGTAAAGA+TGG	-	chr1_3:20337114-20337133	Msa0108720:intron	30.0%
AATTGAATACCGGATAAGTT+AGG	+	chr1_3:20337441-20337460	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	20334710	20350494	20334710	ID=Msa0108720;Name=Msa0108720
chr1_3	mRNA	20334710	20350494	20334710	ID=Msa0108720-mRNA-1;Parent=Msa0108720;Name=Msa0108720-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0\|0.17\|0.11\|1\|0.52\|0.33\|18\|0\|800
chr1_3	exon	20350366	20350494	20350366	ID=Msa0108720-mRNA-1:exon:7368;Parent=Msa0108720-mRNA-1
chr1_3	exon	20349378	20349597	20349378	ID=Msa0108720-mRNA-1:exon:7367;Parent=Msa0108720-mRNA-1
chr1_3	exon	20349135	20349362	20349135	ID=Msa0108720-mRNA-1:exon:7366;Parent=Msa0108720-mRNA-1
chr1_3	exon	20348564	20348694	20348564	ID=Msa0108720-mRNA-1:exon:7365;Parent=Msa0108720-mRNA-1
chr1_3	exon	20348423	20348489	20348423	ID=Msa0108720-mRNA-1:exon:7364;Parent=Msa0108720-mRNA-1
chr1_3	exon	20348403	20348409	20348403	ID=Msa0108720-mRNA-1:exon:7363;Parent=Msa0108720-mRNA-1
chr1_3	exon	20348219	20348391	20348219	ID=Msa0108720-mRNA-1:exon:7362;Parent=Msa0108720-mRNA-1
chr1_3	exon	20347578	20347636	20347578	ID=Msa0108720-mRNA-1:exon:7361;Parent=Msa0108720-mRNA-1
chr1_3	exon	20347240	20347485	20347240	ID=Msa0108720-mRNA-1:exon:7360;Parent=Msa0108720-mRNA-1
chr1_3	exon	20340080	20340154	20340080	ID=Msa0108720-mRNA-1:exon:7359;Parent=Msa0108720-mRNA-1
chr1_3	exon	20339719	20339947	20339719	ID=Msa0108720-mRNA-1:exon:7358;Parent=Msa0108720-mRNA-1
chr1_3	exon	20339038	20339156	20339038	ID=Msa0108720-mRNA-1:exon:7357;Parent=Msa0108720-mRNA-1
chr1_3	exon	20338877	20338963	20338877	ID=Msa0108720-mRNA-1:exon:7356;Parent=Msa0108720-mRNA-1
chr1_3	exon	20338690	20338849	20338690	ID=Msa0108720-mRNA-1:exon:7355;Parent=Msa0108720-mRNA-1
chr1_3	exon	20338484	20338582	20338484	ID=Msa0108720-mRNA-1:exon:7354;Parent=Msa0108720-mRNA-1
chr1_3	exon	20338054	20338109	20338054	ID=Msa0108720-mRNA-1:exon:7353;Parent=Msa0108720-mRNA-1
chr1_3	exon	20337777	20337961	20337777	ID=Msa0108720-mRNA-1:exon:7352;Parent=Msa0108720-mRNA-1
chr1_3	exon	20334710	20334839	20334710	ID=Msa0108720-mRNA-1:exon:7351;Parent=Msa0108720-mRNA-1
chr1_3	CDS	20350366	20350494	20350366	ID=Msa0108720-mRNA-1:cds;Parent=Msa0108720-mRNA-1
chr1_3	CDS	20349378	20349597	20349378	ID=Msa0108720-mRNA-1:cds;Parent=Msa0108720-mRNA-1
chr1_3	CDS	20349135	20349362	20349135	ID=Msa0108720-mRNA-1:cds;Parent=Msa0108720-mRNA-1
chr1_3	CDS	20348564	20348694	20348564	ID=Msa0108720-mRNA-1:cds;Parent=Msa0108720-mRNA-1
chr1_3	CDS	20348423	20348489	20348423	ID=Msa0108720-mRNA-1:cds;Parent=Msa0108720-mRNA-1
chr1_3	CDS	20348403	20348409	20348403	ID=Msa0108720-mRNA-1:cds;Parent=Msa0108720-mRNA-1
chr1_3	CDS	20348219	20348391	20348219	ID=Msa0108720-mRNA-1:cds;Parent=Msa0108720-mRNA-1
chr1_3	CDS	20347578	20347636	20347578	ID=Msa0108720-mRNA-1:cds;Parent=Msa0108720-mRNA-1
chr1_3	CDS	20347240	20347485	20347240	ID=Msa0108720-mRNA-1:cds;Parent=Msa0108720-mRNA-1
chr1_3	CDS	20340080	20340154	20340080	ID=Msa0108720-mRNA-1:cds;Parent=Msa0108720-mRNA-1
chr1_3	CDS	20339719	20339947	20339719	ID=Msa0108720-mRNA-1:cds;Parent=Msa0108720-mRNA-1
chr1_3	CDS	20339038	20339156	20339038	ID=Msa0108720-mRNA-1:cds;Parent=Msa0108720-mRNA-1
chr1_3	CDS	20338877	20338963	20338877	ID=Msa0108720-mRNA-1:cds;Parent=Msa0108720-mRNA-1
chr1_3	CDS	20338690	20338849	20338690	ID=Msa0108720-mRNA-1:cds;Parent=Msa0108720-mRNA-1
chr1_3	CDS	20338484	20338582	20338484	ID=Msa0108720-mRNA-1:cds;Parent=Msa0108720-mRNA-1
chr1_3	CDS	20338054	20338109	20338054	ID=Msa0108720-mRNA-1:cds;Parent=Msa0108720-mRNA-1
chr1_3	CDS	20337777	20337961	20337777	ID=Msa0108720-mRNA-1:cds;Parent=Msa0108720-mRNA-1
chr1_3	CDS	20334710	20334839	20334710	ID=Msa0108720-mRNA-1:cds;Parent=Msa0108720-mRNA-1

Gene Sequence

>Msa0108720

AGATGCAACGCTGAAGATAGACTTCAATCGGAAGTGAAAGAAAGAAGCGAAAATGTCTTCATCTTCATCCAACAGACATGGCAGTGTCGTTGCTCCGATTGCAGTTCAGCCAAGCTCAGCGGCAATTCGAGGGTTCCTAAGATATATGTGGAGAAATATTGGAAAGGAATATCAAACCCTATATTCCTTAAATTTCCAAACGGTGTTGAACAAAAAATATTTTGGGTGGAGAGTAATGGTGATATTTGGTTTCAAAAAAATTGGGAAAGTTTTGCAAAGCCTTTCAAATATGGATATCTCTTAACTTTCAAATTCATTGGTGGATCATATTTTAAGGTTAAGATATTTGAAATAAATTATGCAAATATCAAAGCAGTTGATGAAGGTGCTGAAGCCACTGAAGAAGGCGAGTCAAGTGATGATGAAGCCACAGAAGAAGTTCAAGAAAGTGATGAATCAAGTGATGATGAAGCCACAGAAGAAGGTGAAGAAAGTGATGAAGAGAGTGATGAGAGTTCTGATGAAGTTGAAATGGCAAAGCAAGCTCAAAGGACCAGAAATGGCAAAAGAAAAGCAAGTAGTAACAAAGTGGCCATGGTGAAGAAGGCTAGAAAATATCCAACATCCGAAGCTGTTAATGAAGCTGTTAATGAGAATCCCTCTTTTCAAGTTATAATGACACAATCTTACGTCAATGGCTATCACTTGTGGTTACCAAGTGAGTTTTCAAGAGAACACTTGAAAGATTTTAAAGGGACTGCAACAATAAGAGTTGTGTGGAAGTATTATGATACCAAGGAAAACTCTTGTATGGGAGGTGGTTGGAAAATATTCAGGCAAAAATATAATTTGCAAGTTGATGATGTTTGTGAATTTGAGATGATTCAAAGAAGACCAATTTTATTCATTGTTACTATTACTCGTGCCAAGAAACCAAGCCCAAAGAAATTACTAGAAGGTCCTGATGTGATGAAGCATAAGACATTCAAGGTTTTGGTGAAGAACACAGCCCCGAGTGTACCAAAGGAGTTTATGAAAAGAGGATGTCATGAAAATATTGTGGAGTTGAAAATGGGGAGGAAGTCATGGTTTGTAAAAGTGAATTATTATGAGAGTATTCATGGCTGCAGATTCAGTAAGGGATGGAGAAAATTTATGAAAGAATGCAAAGTGGAGATTGGAGATACTTGTCTCCTTAAGTTGATTGATGAACGGAAATTTGTGTTTGATGTTTCAATTGCAGGAAAGAATCCATTAGCTAGGGTTCCTAAGAAATATGTGGAGAAATATTGGAAAGGAATATCAAACCCTATATTCCTTAAATTTCCAAACGGTGTTAAGATATTTGGTGCTAATATTTTAGAAATAAATTATGCCAATATCAAATCTGTTGATGAAGGAGCTGAAGACACAGAAGAAGAAGGTAAAGAAAGTGATGAATCAAGTGATGATGAAGCCACGGAAGAAAGTCATGAAGAGAGTGATGAATCAAGTGATGACAGTTCAGATGAGGTGGAAATGCCAAAGCAAGCTAAAAGGACAAGAAATGGCAAGAGAAAATTTAGTAGTAACAAAGTAGCAATGGTGAAGAAGGCTATGAAATACCTAACATCTGAAGCTGTTAATGAGAATCCCTCTTTTGAAGTTATAATGACACAATCTTACACCACTGGCTATTTCTTGTGGTTACCAAGTGAGTTTTCAAGAGAACACTTGAAAGATTTTAATGGAACTGCAACAATAAGGGTTGGTAATGAAAGGAGTGTGGAGAAAAAATGTGGTATGGGTGGTGGATGGAAAATATTCAGGCAAAAATATAATTTGCAAGTTGATGATGTTTGTAAATTTGAGATGATTCGACGGAGACCAATTTCATTCAATGTTACTATTACTCGTGCCGGAAACGAACCATTCACAAAGAAATTACTAGGTTATAAGAAAGGGGTCTCTTGTGGTAAGAGTGTTGCAAAGAAGGAAGACATTGGAGGAACGTCTTCTAGGAGCCGTCCAAAAGAAAATTTTCTTGAGGGTCGTGATGCGATGAAGCATAACACATTCAAGGTTTTGGTGAAGAACACAGCCCCGAGTGTACCAAAGGAGTTTATGAAAAGAGGATGTCATGAAAATATTGTGGAGTTGAAAATGGGGAGAAAGTCATGGTTCGTAAAAGTCAATTATTATCAGAGTCTTTGTGGCTGTAGGTTCGGTAAAGGTTGGAGAAAATTCATGAAAGAATGCAAAGTGGAGATTGGAGATACTTGTCTCTTTAAGTTCAGTAAAGGTTGGATAAAATTCATGAAAGAATGCAAAGTGGAGATTGGAGATACTTGTCTCCTTAAGTTGATTGATGAGAGGAAATTTGTGTTTGATGTTTCAATTGCAGGAAAGAATCCATTAGCT

Protein sequence

>Msa0108720

RCNAEDRLQSEVKERSENVFIFIQQTWQCRCSDCSSAKLSGNSRVPKIYVEKYWKGISNPIFLKFPNGVEQKIFWVESNGDIWFQKNWESFAKPFKYGYLLTFKFIGGSYFKVKIFEINYANIKAVDEGAEATEEGESSDDEATEEVQESDESSDDEATEEGEESDEESDESSDEVEMAKQAQRTRNGKRKASSNKVAMVKKARKYPTSEAVNEAVNENPSFQVIMTQSYVNGYHLWLPSEFSREHLKDFKGTATIRVVWKYYDTKENSCMGGGWKIFRQKYNLQVDDVCEFEMIQRRPILFIVTITRAKKPSPKKLLEGPDVMKHKTFKVLVKNTAPSVPKEFMKRGCHENIVELKMGRKSWFVKVNYYESIHGCRFSKGWRKFMKECKVEIGDTCLLKLIDERKFVFDVSIAGKNPLARVPKKYVEKYWKGISNPIFLKFPNGVKIFGANILEINYANIKSVDEGAEDTEEEGKESDESSDDEATEESHEESDESSDDSSDEVEMPKQAKRTRNGKRKFSSNKVAMVKKAMKYLTSEAVNENPSFEVIMTQSYTTGYFLWLPSEFSREHLKDFNGTATIRVGNERSVEKKCGMGGGWKIFRQKYNLQVDDVCKFEMIRRRPISFNVTITRAGNEPFTKKLLGYKKGVSCGKSVAKKEDIGGTSSRSRPKENFLEGRDAMKHNTFKVLVKNTAPSVPKEFMKRGCHENIVELKMGRKSWFVKVNYYQSLCGCRFGKGWRKFMKECKVEIGDTCLFKFSKGWIKFMKECKVEIGDTCLLKLIDERKFVFDVSIAGKNPLA