Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0108800 | sp|Q8GT75|NIP1_ARATH | 64.667 | 150 | 53 | 0 | 379 | 528 | 84 | 233 | 1.10e-61 | 206 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0108800 | G7K240 | 84.667 | 300 | 38 | 1 | 88 | 379 | 239 | 538 | 4.46e-160 | 480 |
Gene ID | Type | Classification |
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Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0108800 | MtrunA17_Chr5g0437131 | 84.667 | 300 | 38 | 1 | 88 | 379 | 239 | 538 | 8.24e-163 | 481 |
Msa0108800 | MtrunA17_Chr8g0371291 | 78.667 | 150 | 25 | 1 | 379 | 528 | 80 | 222 | 2.82e-79 | 249 |
Msa0108800 | MtrunA17_Chr6g0480541 | 69.714 | 175 | 45 | 1 | 213 | 379 | 859 | 1033 | 1.57e-73 | 255 |
Msa0108800 | MtrunA17_Chr5g0406031 | 68.000 | 150 | 47 | 1 | 379 | 528 | 83 | 231 | 2.33e-65 | 213 |
Msa0108800 | MtrunA17_Chr6g0480481 | 52.174 | 161 | 33 | 2 | 227 | 379 | 9 | 133 | 1.73e-41 | 149 |
Msa0108800 | MtrunA17_Chr8g0369241 | 38.378 | 185 | 95 | 5 | 210 | 379 | 91 | 271 | 3.25e-24 | 107 |
Msa0108800 | MtrunA17_Chr4g0060981 | 35.443 | 158 | 86 | 4 | 379 | 528 | 67 | 216 | 9.78e-22 | 94.0 |
Msa0108800 | MtrunA17_Chr3g0126701 | 77.358 | 53 | 12 | 0 | 528 | 580 | 510 | 562 | 2.06e-20 | 95.9 |
Msa0108800 | MtrunA17_Chr5g0444161 | 33.333 | 132 | 66 | 6 | 408 | 528 | 107 | 227 | 9.45e-14 | 71.2 |
Msa0108800 | MtrunA17_Chr1g0147121 | 61.224 | 49 | 19 | 0 | 532 | 580 | 483 | 531 | 9.94e-14 | 74.7 |
Msa0108800 | MtrunA17_Chr5g0444141 | 33.333 | 123 | 78 | 3 | 408 | 528 | 142 | 262 | 2.05e-12 | 67.8 |
Msa0108800 | MtrunA17_Chr1g0210061 | 33.562 | 146 | 80 | 4 | 247 | 379 | 605 | 746 | 2.13e-12 | 70.5 |
Msa0108800 | MtrunA17_Chr8g0388231 | 43.421 | 76 | 42 | 1 | 457 | 532 | 309 | 383 | 3.68e-12 | 68.6 |
Msa0108800 | MtrunA17_Chr4g0067591 | 35.065 | 77 | 45 | 1 | 452 | 528 | 75 | 146 | 4.16e-12 | 67.0 |
Msa0108800 | MtrunA17_Chr6g0451031 | 48.889 | 45 | 23 | 0 | 484 | 528 | 67 | 111 | 4.44e-12 | 63.5 |
Msa0108800 | MtrunA17_Chr3g0128771 | 41.026 | 78 | 39 | 2 | 456 | 530 | 90 | 163 | 5.85e-12 | 64.7 |
Msa0108800 | MtrunA17_Chr7g0246761 | 32.558 | 129 | 64 | 5 | 406 | 528 | 21 | 132 | 6.47e-12 | 64.7 |
Msa0108800 | MtrunA17_Chr5g0411081 | 37.209 | 86 | 47 | 1 | 443 | 528 | 112 | 190 | 8.74e-12 | 67.0 |
Msa0108800 | MtrunA17_Chr8g0366561 | 43.243 | 74 | 41 | 1 | 457 | 530 | 114 | 186 | 1.14e-11 | 66.6 |
Msa0108800 | MtrunA17_Chr8g0369571 | 48.889 | 45 | 23 | 0 | 484 | 528 | 88 | 132 | 2.95e-11 | 62.8 |
Msa0108800 | MtrunA17_Chr5g0437361 | 37.209 | 86 | 53 | 1 | 450 | 535 | 68 | 152 | 4.64e-11 | 62.0 |
Msa0108800 | MtrunA17_Chr6g0451051 | 31.915 | 94 | 61 | 1 | 456 | 549 | 39 | 129 | 5.82e-11 | 61.2 |
Msa0108800 | MtrunA17_Chr6g0451041 | 42.188 | 64 | 37 | 0 | 486 | 549 | 18 | 81 | 8.07e-11 | 58.9 |
Msa0108800 | MtrunA17_Chr8g0383921 | 32.692 | 104 | 65 | 2 | 455 | 558 | 109 | 207 | 9.32e-11 | 62.0 |
Msa0108800 | MtrunA17_Chr8g0383871 | 33.010 | 103 | 64 | 2 | 456 | 558 | 111 | 208 | 9.83e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0108800 | AT2G40120.1 | 72.941 | 170 | 38 | 1 | 218 | 379 | 227 | 396 | 4.09e-77 | 255 |
Msa0108800 | AT1G73460.2 | 60.577 | 208 | 71 | 3 | 183 | 379 | 786 | 993 | 1.41e-70 | 247 |
Msa0108800 | AT1G73460.1 | 60.577 | 208 | 71 | 3 | 183 | 379 | 786 | 993 | 1.41e-70 | 247 |
Msa0108800 | AT1G73450.1 | 66.857 | 175 | 50 | 1 | 213 | 379 | 802 | 976 | 1.81e-70 | 246 |
Msa0108800 | AT3G17750.1 | 64.571 | 175 | 54 | 1 | 213 | 379 | 788 | 962 | 1.29e-66 | 235 |
Msa0108800 | AT4G35840.1 | 64.667 | 150 | 53 | 0 | 379 | 528 | 84 | 233 | 1.12e-62 | 206 |
Msa0108800 | AT2G17730.1 | 64.000 | 150 | 54 | 0 | 379 | 528 | 89 | 238 | 2.84e-62 | 206 |
Msa0108800 | AT5G66070.5 | 63.333 | 150 | 50 | 1 | 379 | 528 | 74 | 218 | 4.91e-59 | 196 |
Msa0108800 | AT5G66070.1 | 63.333 | 150 | 50 | 1 | 379 | 528 | 74 | 218 | 4.91e-59 | 196 |
Msa0108800 | AT2G17730.2 | 63.636 | 143 | 52 | 0 | 379 | 521 | 89 | 231 | 3.25e-57 | 192 |
Msa0108800 | AT4G35840.2 | 53.297 | 182 | 53 | 1 | 379 | 528 | 84 | 265 | 5.51e-56 | 190 |
Msa0108800 | AT5G66070.2 | 54.598 | 174 | 50 | 2 | 379 | 528 | 74 | 242 | 1.63e-53 | 182 |
Msa0108800 | AT5G66070.4 | 58.929 | 112 | 41 | 1 | 380 | 491 | 75 | 181 | 4.28e-36 | 134 |
Msa0108800 | AT5G66070.3 | 48.175 | 137 | 42 | 2 | 379 | 491 | 74 | 205 | 6.43e-29 | 114 |
Msa0108800 | AT1G74410.1 | 36.000 | 150 | 93 | 1 | 381 | 530 | 74 | 220 | 2.88e-24 | 101 |
Msa0108800 | AT5G35980.2 | 37.569 | 181 | 94 | 5 | 228 | 393 | 92 | 268 | 4.80e-23 | 104 |
Msa0108800 | AT5G35980.3 | 37.705 | 183 | 91 | 6 | 228 | 393 | 57 | 233 | 4.82e-23 | 104 |
Msa0108800 | AT5G35980.1 | 37.705 | 183 | 91 | 6 | 228 | 393 | 92 | 268 | 5.13e-23 | 104 |
Msa0108800 | AT3G20395.1 | 33.333 | 123 | 76 | 2 | 408 | 529 | 97 | 214 | 7.66e-16 | 77.4 |
Msa0108800 | AT3G18773.1 | 39.560 | 91 | 49 | 2 | 451 | 537 | 97 | 185 | 2.72e-13 | 70.1 |
Msa0108800 | AT5G53430.1 | 52.632 | 57 | 27 | 0 | 526 | 582 | 486 | 542 | 1.02e-12 | 72.0 |
Msa0108800 | AT1G49200.1 | 41.892 | 74 | 41 | 1 | 455 | 528 | 107 | 178 | 1.34e-12 | 68.2 |
Msa0108800 | AT2G17450.1 | 37.179 | 78 | 45 | 1 | 455 | 528 | 67 | 144 | 3.89e-12 | 65.9 |
Msa0108800 | AT5G05280.1 | 41.333 | 75 | 40 | 1 | 456 | 530 | 87 | 157 | 4.55e-12 | 65.5 |
Msa0108800 | AT4G27910.1 | 52.941 | 51 | 24 | 0 | 532 | 582 | 477 | 527 | 1.30e-11 | 68.2 |
Msa0108800 | AT5G17600.1 | 40.000 | 90 | 49 | 2 | 439 | 528 | 100 | 184 | 2.69e-11 | 65.9 |
Msa0108800 | AT1G49210.1 | 40.541 | 74 | 42 | 1 | 455 | 528 | 106 | 177 | 2.85e-11 | 63.9 |
Msa0108800 | AT5G01880.1 | 41.558 | 77 | 41 | 2 | 455 | 530 | 76 | 149 | 4.68e-11 | 62.0 |
Msa0108800 | AT3G16720.1 | 36.364 | 77 | 45 | 1 | 452 | 528 | 89 | 161 | 5.20e-11 | 64.7 |
Msa0108800 | AT5G53110.1 | 35.443 | 79 | 50 | 1 | 457 | 535 | 302 | 379 | 7.98e-11 | 64.7 |
Msa0108800 | AT5G10380.1 | 37.209 | 86 | 50 | 2 | 443 | 528 | 96 | 177 | 8.14e-11 | 63.9 |
Msa0108800 | AT2G27940.1 | 39.241 | 79 | 38 | 2 | 456 | 531 | 114 | 185 | 8.27e-11 | 62.8 |
Find 119 sgRNAs with CRISPR-Local
Find 362 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATTAGCTACCTTAATTTAA+AGG | 0.143063 | 1_3:-20447495 | Msa0108800:CDS |
CTTTGGCATTCGAATAATTC+TGG | 0.197162 | 1_3:-20446672 | Msa0108800:CDS |
CATAAATTCAACCAAGAATA+TGG | 0.227119 | 1_3:-20446849 | Msa0108800:CDS |
GCTTAATTTCCTTTAAATTA+AGG | 0.237843 | 1_3:+20447486 | None:intergenic |
ATGCTTCACCACCATATTCT+TGG | 0.272074 | 1_3:+20446838 | None:intergenic |
TTAAGGTAGCTAATGTTTAT+AGG | 0.288253 | 1_3:+20447503 | None:intergenic |
TGCTCACTGTCTCTGCATAA+TGG | 0.302576 | 1_3:+20446276 | None:intergenic |
ACAGAAAAGCAAGCACTTAA+TGG | 0.303631 | 1_3:-20446153 | Msa0108800:CDS |
TTCCTGTTCAATTTGCCTTC+AGG | 0.305106 | 1_3:-20446397 | Msa0108800:CDS |
TTGTATGTTCTATTGATCTT+TGG | 0.316674 | 1_3:-20446689 | Msa0108800:CDS |
CATTACTCGACAGTGTTTAG+AGG | 0.319594 | 1_3:-20446790 | Msa0108800:CDS |
GGTTAAACGTATGATGATAA+TGG | 0.326660 | 1_3:+20446340 | None:intergenic |
CATTCGAATAATTCTGGAAT+AGG | 0.333342 | 1_3:-20446666 | Msa0108800:CDS |
CACTTGTGATTGAGACTATT+GGG | 0.340792 | 1_3:+20446451 | None:intergenic |
GTTAAACGTATGATGATAAT+GGG | 0.346709 | 1_3:+20446341 | None:intergenic |
TAGCTTCGATCCGGAGGTTT+GGG | 0.350467 | 1_3:+20447761 | None:intergenic |
ATGCGCAATGGCTTCTTTCT+CGG | 0.367067 | 1_3:+20447586 | None:intergenic |
TCACTTGTGATTGAGACTAT+TGG | 0.368196 | 1_3:+20446450 | None:intergenic |
ATAGCTTCGATCCGGAGGTT+TGG | 0.378202 | 1_3:+20447760 | None:intergenic |
TTCTAACAGTCTCTCCCATT+TGG | 0.383802 | 1_3:+20446370 | None:intergenic |
GCTCACTGTCTCTGCATAAT+GGG | 0.397596 | 1_3:+20446277 | None:intergenic |
GCAATCTGAACTATGCTTCA+TGG | 0.399375 | 1_3:+20447403 | None:intergenic |
AGACAGAATTATGAGGCTTC+AGG | 0.401315 | 1_3:+20446727 | None:intergenic |
ATTGCAATATTTACATAACT+TGG | 0.409904 | 1_3:-20446766 | Msa0108800:CDS |
TAAGAAGCTTGATTTCATCT+AGG | 0.411237 | 1_3:+20446994 | None:intergenic |
TGCCTTCAGGATTTCCAAAT+GGG | 0.419108 | 1_3:-20446384 | Msa0108800:CDS |
GAGTGAAGAACTCCATGTTC+CGG | 0.421411 | 1_3:-20447288 | Msa0108800:CDS |
CGATCCGGAGGTTTGGGTAG+TGG | 0.425881 | 1_3:+20447767 | None:intergenic |
TTTCAACATATCTTTGACAT+TGG | 0.427382 | 1_3:-20446513 | Msa0108800:CDS |
GTTCAGCAGGTTCTTGTAGT+GGG | 0.431132 | 1_3:-20447529 | Msa0108800:CDS |
ATCCTGAAGGCAAATTGAAC+AGG | 0.433788 | 1_3:+20446395 | None:intergenic |
GTTGCTGCAGCAGCTCACGC+CGG | 0.436700 | 1_3:-20445444 | Msa0108800:intron |
GGATGTGACAGAGGCTTACT+AGG | 0.444182 | 1_3:-20446492 | Msa0108800:CDS |
GGCTTCTTTCTCGGCACTGA+GGG | 0.450284 | 1_3:+20447595 | None:intergenic |
TCTGGTGGTGCAGGAAGTGG+TGG | 0.450710 | 1_3:+20447689 | None:intergenic |
TATTTCAACAAACATGTAAT+GGG | 0.455848 | 1_3:+20447619 | None:intergenic |
TTATGACTATTTCTACCATC+AGG | 0.460782 | 1_3:-20446922 | Msa0108800:CDS |
TCTCCATCTGTGGCAGCCTC+CGG | 0.462617 | 1_3:+20447269 | None:intergenic |
TTGCTGCAGCAGCTCACGCC+GGG | 0.462792 | 1_3:-20445443 | Msa0108800:intron |
TTGCCTTCAGGATTTCCAAA+TGG | 0.467728 | 1_3:-20446385 | Msa0108800:CDS |
CTACAAGAACCTGCTGAACC+TGG | 0.473048 | 1_3:+20447533 | None:intergenic |
GTGTCTGGTGGTGCAGGAAG+TGG | 0.476291 | 1_3:+20447686 | None:intergenic |
TTGGGTAGTGGCGGCAGAGT+CGG | 0.481200 | 1_3:+20447779 | None:intergenic |
TAAGTTTGCACGCAGAAGTT+CGG | 0.485105 | 1_3:+20446881 | None:intergenic |
AAAAGCAGTCCAGGTTCAGC+AGG | 0.497375 | 1_3:-20447542 | Msa0108800:CDS |
CACTTAGTTGTGTGCAAGTG+TGG | 0.500438 | 1_3:-20446186 | Msa0108800:CDS |
CTGTGGCAGCCTCCGGAACA+TGG | 0.502526 | 1_3:+20447276 | None:intergenic |
GGTTCAGCAGGTTCTTGTAG+TGG | 0.505056 | 1_3:-20447530 | Msa0108800:CDS |
TTGCAATATTTACATAACTT+GGG | 0.506178 | 1_3:-20446765 | Msa0108800:CDS |
AGTATGTGGCGTTTATCTCC+CGG | 0.506715 | 1_3:+20446951 | None:intergenic |
GTTCCGGAGGCTGCCACAGA+TGG | 0.508408 | 1_3:-20447272 | Msa0108800:CDS |
ATCTTCTGATAGCTTCGATC+CGG | 0.508560 | 1_3:+20447752 | None:intergenic |
ATAGAGAAGACAGAATTATG+AGG | 0.508809 | 1_3:+20446720 | None:intergenic |
CACACAACTAAGTGTAGGCT+TGG | 0.511853 | 1_3:+20446195 | None:intergenic |
GTATTTCAACAAACATGTAA+TGG | 0.512226 | 1_3:+20447618 | None:intergenic |
CCATTGCTTTCAATCCCATT+CGG | 0.516665 | 1_3:+20447332 | None:intergenic |
ACCTACCTTGCATTGACAAG+TGG | 0.517649 | 1_3:-20446320 | Msa0108800:CDS |
ACCAGACACCGAAAATAGAT+TGG | 0.519369 | 1_3:-20447672 | Msa0108800:CDS |
GGAGTTCTTCACTCAAATAT+CGG | 0.520249 | 1_3:+20447297 | None:intergenic |
ATCTGTTTCAACAACTTCGA+TGG | 0.530198 | 1_3:+20447358 | None:intergenic |
GCCATTTGTTGATCATGCCC+CGG | 0.533576 | 1_3:+20445425 | None:intergenic |
TTGAAACAGATCTACCGAAT+GGG | 0.535513 | 1_3:-20447346 | Msa0108800:CDS |
TAAAGGAAATTAAGCTGAGT+CGG | 0.536864 | 1_3:-20447478 | Msa0108800:CDS |
GGTGGTGCAGGAAGTGGTGG+AGG | 0.539230 | 1_3:+20447692 | None:intergenic |
TCGGTTCAGCTACCTTCAGT+AGG | 0.540246 | 1_3:-20447076 | Msa0108800:CDS |
TTCTGATAGCTTCGATCCGG+AGG | 0.545370 | 1_3:+20447755 | None:intergenic |
GATTGTGCTGAACACGGTCA+TGG | 0.546919 | 1_3:-20447126 | Msa0108800:CDS |
GTGCATGGAAAGAATAGGAC+TGG | 0.553009 | 1_3:-20447173 | Msa0108800:CDS |
GCCGCCACTACCCAAACCTC+CGG | 0.562559 | 1_3:-20447771 | Msa0108800:CDS |
AACTTCAGAATTATGCGCAA+TGG | 0.563755 | 1_3:+20447574 | None:intergenic |
GTATGTGGCGTTTATCTCCC+GGG | 0.564712 | 1_3:+20446952 | None:intergenic |
TTCAGCAGGTTCTTGTAGTG+GGG | 0.568017 | 1_3:-20447528 | Msa0108800:CDS |
GTACAAGTCTCCCACTCACT+AGG | 0.571667 | 1_3:+20446610 | None:intergenic |
AGTCATAAAGACGCAGTATG+TGG | 0.573921 | 1_3:+20446937 | None:intergenic |
TGCAGGAAGTGGTGGAGGCA+AGG | 0.579538 | 1_3:+20447697 | None:intergenic |
GACAAGTGGCTCATCAAGCA+TGG | 0.579677 | 1_3:-20446306 | Msa0108800:CDS |
CTCCCATTTGGAAATCCTGA+AGG | 0.579740 | 1_3:+20446382 | None:intergenic |
GAATTGTGCATGGAAAGAAT+AGG | 0.580039 | 1_3:-20447178 | Msa0108800:CDS |
TTCAGTAGGGATGCTCTCGA+TGG | 0.583985 | 1_3:-20447062 | Msa0108800:CDS |
CGGTTCAGCTACCTTCAGTA+GGG | 0.590898 | 1_3:-20447075 | Msa0108800:CDS |
TGCTGCAGCAGCTCACGCCG+GGG | 0.593738 | 1_3:-20445442 | Msa0108800:intron |
GTTCAAAGTCAGATGGGTGC+AGG | 0.598923 | 1_3:-20446555 | Msa0108800:CDS |
AAAAGCAAGCACTTAATGGA+TGG | 0.599900 | 1_3:-20446149 | Msa0108800:CDS |
CAATGAATAAATGTTCCTGA+TGG | 0.601057 | 1_3:+20446907 | None:intergenic |
GAATGCTGTTCAAAGTCAGA+TGG | 0.601226 | 1_3:-20446562 | Msa0108800:CDS |
GGGATTGAAAGCAATGGAGT+AGG | 0.601533 | 1_3:-20447326 | Msa0108800:CDS |
TTATTACTAGCCTAGTGAGT+GGG | 0.602053 | 1_3:-20446620 | Msa0108800:CDS |
TGTGAATGTTTCGATAGTAG+TGG | 0.604151 | 1_3:+20447818 | None:intergenic |
GGTGAAATTCATCACAACAT+CGG | 0.604562 | 1_3:-20447651 | Msa0108800:CDS |
TCCGGAGGTTTGGGTAGTGG+CGG | 0.605445 | 1_3:+20447770 | None:intergenic |
ATGAGCCACTTGTCAATGCA+AGG | 0.605600 | 1_3:+20446315 | None:intergenic |
GTTGAAACAGATCTACCGAA+TGG | 0.607989 | 1_3:-20447347 | Msa0108800:CDS |
CCGAATGGGATTGAAAGCAA+TGG | 0.608264 | 1_3:-20447332 | Msa0108800:CDS |
TTTGACATTGGATGTGACAG+AGG | 0.609823 | 1_3:-20446501 | Msa0108800:CDS |
TTTGAGCTAAGAATTGTGCA+TGG | 0.611242 | 1_3:-20447188 | Msa0108800:CDS |
GACTGGATTTGAAGAAAACA+AGG | 0.612197 | 1_3:-20447156 | Msa0108800:CDS |
TGGCTTCTTTCTCGGCACTG+AGG | 0.612609 | 1_3:+20447594 | None:intergenic |
ATCGAGAGCATCCCTACTGA+AGG | 0.612994 | 1_3:+20447064 | None:intergenic |
GCATAGTTCAGATTGCTACA+AGG | 0.615746 | 1_3:-20447396 | Msa0108800:CDS |
TACTATGTGACAGATTATCT+CGG | 0.618368 | 1_3:-20447095 | Msa0108800:CDS |
ATTATTATCCTCTCCATCTG+TGG | 0.619270 | 1_3:+20447259 | None:intergenic |
TGAACACGGTCATGGCTGAA+AGG | 0.620232 | 1_3:-20447118 | Msa0108800:CDS |
CTTGTCGATAAGCACGACCC+GGG | 0.628203 | 1_3:-20446969 | Msa0108800:CDS |
ACTTGCACACAACTAAGTGT+AGG | 0.640898 | 1_3:+20446190 | None:intergenic |
ACTTTGAACAGCATTCAACA+TGG | 0.643300 | 1_3:+20446569 | None:intergenic |
GGAGGCTGCCACAGATGGAG+AGG | 0.645603 | 1_3:-20447267 | Msa0108800:CDS |
AAGCTATCAGAAGATTCTCG+TGG | 0.653064 | 1_3:-20447744 | Msa0108800:CDS |
ATTATTACTAGCCTAGTGAG+TGG | 0.653310 | 1_3:-20446621 | Msa0108800:CDS |
TGAAGAACTCCATGTTCCGG+AGG | 0.656619 | 1_3:-20447285 | Msa0108800:CDS |
AATGCTGTTCAAAGTCAGAT+GGG | 0.656650 | 1_3:-20446561 | Msa0108800:CDS |
ACTTGTCGATAAGCACGACC+CGG | 0.656700 | 1_3:-20446970 | Msa0108800:CDS |
GCTTCTTTCTCGGCACTGAG+GGG | 0.663612 | 1_3:+20447596 | None:intergenic |
AAATTCAACCAAGAATATGG+TGG | 0.668921 | 1_3:-20446846 | Msa0108800:CDS |
TTAAACGTATGATGATAATG+GGG | 0.679275 | 1_3:+20446342 | None:intergenic |
AGACTTGTACGTGAAAGAGT+TGG | 0.691935 | 1_3:-20446597 | Msa0108800:CDS |
GCCACTTGTCAATGCAAGGT+AGG | 0.694066 | 1_3:+20446319 | None:intergenic |
AATGGATGGCAACAACACAA+AGG | 0.695166 | 1_3:-20446135 | Msa0108800:intron |
AGTGCTGATTGTGCTGAACA+CGG | 0.717577 | 1_3:-20447132 | Msa0108800:CDS |
AGAGTCGGAGTGAAAACACG+TGG | 0.744559 | 1_3:+20447794 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATTTCAACAAACATGTAAT+GGG | + | chr1_3:20445669-20445688 | None:intergenic | 20.0% |
!! | GCTTAATTTCCTTTAAATTA+AGG | + | chr1_3:20445802-20445821 | None:intergenic | 20.0% |
!! | GAAGATTATTAAAAATGACA+AGG | - | chr1_3:20446252-20446271 | Msa0108800:CDS | 20.0% |
!! | ATTGCAATATTTACATAACT+TGG | - | chr1_3:20446519-20446538 | Msa0108800:CDS | 20.0% |
!! | TTGCAATATTTACATAACTT+GGG | - | chr1_3:20446520-20446539 | Msa0108800:CDS | 20.0% |
!!! | AAGATTAATGTTTTTTGCAA+TGG | - | chr1_3:20447048-20447067 | Msa0108800:CDS | 20.0% |
!! | TCTAGAAAATTACTAAGATT+TGG | + | chr1_3:20447492-20447511 | None:intergenic | 20.0% |
!!! | TTTTATTTTATTTCAACCCA+TGG | - | chr1_3:20447531-20447550 | Msa0108800:CDS | 20.0% |
!!! | TTTATTTTATTTCAACCCAT+GGG | - | chr1_3:20447532-20447551 | Msa0108800:CDS | 20.0% |
!! | TATTTCAACAAACATGTAAT+GGG | + | chr1_3:20445669-20445688 | None:intergenic | 20.0% |
!! | GCTTAATTTCCTTTAAATTA+AGG | + | chr1_3:20445802-20445821 | None:intergenic | 20.0% |
!! | GAAGATTATTAAAAATGACA+AGG | - | chr1_3:20446252-20446271 | Msa0108800:CDS | 20.0% |
!! | ATTGCAATATTTACATAACT+TGG | - | chr1_3:20446519-20446538 | Msa0108800:CDS | 20.0% |
!! | TTGCAATATTTACATAACTT+GGG | - | chr1_3:20446520-20446539 | Msa0108800:CDS | 20.0% |
!!! | AAGATTAATGTTTTTTGCAA+TGG | - | chr1_3:20447048-20447067 | Msa0108800:CDS | 20.0% |
!! | TCTAGAAAATTACTAAGATT+TGG | + | chr1_3:20447492-20447511 | None:intergenic | 20.0% |
!!! | TTTTATTTTATTTCAACCCA+TGG | - | chr1_3:20447531-20447550 | Msa0108800:CDS | 20.0% |
!!! | TTTATTTTATTTCAACCCAT+GGG | - | chr1_3:20447532-20447551 | Msa0108800:CDS | 20.0% |
!! | GAATTTCACCAATCTATTTT+CGG | + | chr1_3:20445624-20445643 | None:intergenic | 25.0% |
! | GTATTTCAACAAACATGTAA+TGG | + | chr1_3:20445670-20445689 | None:intergenic | 25.0% |
! | TTAAGGTAGCTAATGTTTAT+AGG | + | chr1_3:20445785-20445804 | None:intergenic | 25.0% |
! | CATTAGCTACCTTAATTTAA+AGG | - | chr1_3:20445790-20445809 | Msa0108800:intron | 25.0% |
! | CATAAATTCAACCAAGAATA+TGG | - | chr1_3:20446436-20446455 | Msa0108800:CDS | 25.0% |
! | TTGTATGTTCTATTGATCTT+TGG | - | chr1_3:20446596-20446615 | Msa0108800:CDS | 25.0% |
! | TTTCAACATATCTTTGACAT+TGG | - | chr1_3:20446772-20446791 | Msa0108800:CDS | 25.0% |
!! | TTAAACGTATGATGATAATG+GGG | + | chr1_3:20446946-20446965 | None:intergenic | 25.0% |
! | GTTAAACGTATGATGATAAT+GGG | + | chr1_3:20446947-20446966 | None:intergenic | 25.0% |
!! | TGTTTTCCAATCTCTTAATT+TGG | + | chr1_3:20447178-20447197 | None:intergenic | 25.0% |
! | ATGCTACTATATTTCTTCAA+TGG | - | chr1_3:20447262-20447281 | Msa0108800:CDS | 25.0% |
! | TGCTACTATATTTCTTCAAT+GGG | - | chr1_3:20447263-20447282 | Msa0108800:CDS | 25.0% |
!!! | AAACTTGTTCTTTTCTATCT+AGG | - | chr1_3:20447722-20447741 | Msa0108800:CDS | 25.0% |
!! | GAATTTCACCAATCTATTTT+CGG | + | chr1_3:20445624-20445643 | None:intergenic | 25.0% |
! | GTATTTCAACAAACATGTAA+TGG | + | chr1_3:20445670-20445689 | None:intergenic | 25.0% |
! | TTAAGGTAGCTAATGTTTAT+AGG | + | chr1_3:20445785-20445804 | None:intergenic | 25.0% |
! | CATTAGCTACCTTAATTTAA+AGG | - | chr1_3:20445790-20445809 | Msa0108800:intron | 25.0% |
! | CATAAATTCAACCAAGAATA+TGG | - | chr1_3:20446436-20446455 | Msa0108800:CDS | 25.0% |
! | TTGTATGTTCTATTGATCTT+TGG | - | chr1_3:20446596-20446615 | Msa0108800:CDS | 25.0% |
! | TTTCAACATATCTTTGACAT+TGG | - | chr1_3:20446772-20446791 | Msa0108800:CDS | 25.0% |
!! | TTAAACGTATGATGATAATG+GGG | + | chr1_3:20446946-20446965 | None:intergenic | 25.0% |
! | GTTAAACGTATGATGATAAT+GGG | + | chr1_3:20446947-20446966 | None:intergenic | 25.0% |
!! | TGTTTTCCAATCTCTTAATT+TGG | + | chr1_3:20447178-20447197 | None:intergenic | 25.0% |
! | ATGCTACTATATTTCTTCAA+TGG | - | chr1_3:20447262-20447281 | Msa0108800:CDS | 25.0% |
! | TGCTACTATATTTCTTCAAT+GGG | - | chr1_3:20447263-20447282 | Msa0108800:CDS | 25.0% |
!!! | AAACTTGTTCTTTTCTATCT+AGG | - | chr1_3:20447722-20447741 | Msa0108800:CDS | 25.0% |
TAAAGGAAATTAAGCTGAGT+CGG | - | chr1_3:20445807-20445826 | Msa0108800:intron | 30.0% | |
! | TCGGAATGATTTTCATATGA+AGG | - | chr1_3:20445826-20445845 | Msa0108800:intron | 30.0% |
! | CGGAATGATTTTCATATGAA+GGG | - | chr1_3:20445827-20445846 | Msa0108800:intron | 30.0% |
!! | CATCTTGACTGTATTTTAAG+AGG | + | chr1_3:20446063-20446082 | None:intergenic | 30.0% |
TACTATGTGACAGATTATCT+CGG | - | chr1_3:20446190-20446209 | Msa0108800:CDS | 30.0% | |
TAAGAAGCTTGATTTCATCT+AGG | + | chr1_3:20446294-20446313 | None:intergenic | 30.0% | |
!! | TTATGACTATTTCTACCATC+AGG | - | chr1_3:20446363-20446382 | Msa0108800:CDS | 30.0% |
CAATGAATAAATGTTCCTGA+TGG | + | chr1_3:20446381-20446400 | None:intergenic | 30.0% | |
AAATTCAACCAAGAATATGG+TGG | - | chr1_3:20446439-20446458 | Msa0108800:CDS | 30.0% | |
ATAGAGAAGACAGAATTATG+AGG | + | chr1_3:20446568-20446587 | None:intergenic | 30.0% | |
!! | CATTCGAATAATTCTGGAAT+AGG | - | chr1_3:20446619-20446638 | Msa0108800:CDS | 30.0% |
GGTTAAACGTATGATGATAA+TGG | + | chr1_3:20446948-20446967 | None:intergenic | 30.0% | |
AAGGTTCCAAATTAAGAGAT+TGG | - | chr1_3:20447169-20447188 | Msa0108800:CDS | 30.0% | |
GTATTATTGTGAAAGACTCT+AGG | - | chr1_3:20447199-20447218 | Msa0108800:CDS | 30.0% | |
TTTATCAAAATGAGAACTCG+AGG | - | chr1_3:20447397-20447416 | Msa0108800:CDS | 30.0% | |
GAAAGAAATAACAAACCCAT+GGG | + | chr1_3:20447550-20447569 | None:intergenic | 30.0% | |
TGAAAGAAATAACAAACCCA+TGG | + | chr1_3:20447551-20447570 | None:intergenic | 30.0% | |
! | AATCAAAAAGTGTACCTCTT+AGG | + | chr1_3:20447597-20447616 | None:intergenic | 30.0% |
CGACAAACCTATCAAAATAA+GGG | + | chr1_3:20447668-20447687 | None:intergenic | 30.0% | |
TAAAGGAAATTAAGCTGAGT+CGG | - | chr1_3:20445807-20445826 | Msa0108800:intron | 30.0% | |
! | TCGGAATGATTTTCATATGA+AGG | - | chr1_3:20445826-20445845 | Msa0108800:intron | 30.0% |
! | CGGAATGATTTTCATATGAA+GGG | - | chr1_3:20445827-20445846 | Msa0108800:intron | 30.0% |
!! | CATCTTGACTGTATTTTAAG+AGG | + | chr1_3:20446063-20446082 | None:intergenic | 30.0% |
TACTATGTGACAGATTATCT+CGG | - | chr1_3:20446190-20446209 | Msa0108800:CDS | 30.0% | |
TAAGAAGCTTGATTTCATCT+AGG | + | chr1_3:20446294-20446313 | None:intergenic | 30.0% | |
!! | TTATGACTATTTCTACCATC+AGG | - | chr1_3:20446363-20446382 | Msa0108800:CDS | 30.0% |
CAATGAATAAATGTTCCTGA+TGG | + | chr1_3:20446381-20446400 | None:intergenic | 30.0% | |
AAATTCAACCAAGAATATGG+TGG | - | chr1_3:20446439-20446458 | Msa0108800:CDS | 30.0% | |
ATAGAGAAGACAGAATTATG+AGG | + | chr1_3:20446568-20446587 | None:intergenic | 30.0% | |
!! | CATTCGAATAATTCTGGAAT+AGG | - | chr1_3:20446619-20446638 | Msa0108800:CDS | 30.0% |
GGTTAAACGTATGATGATAA+TGG | + | chr1_3:20446948-20446967 | None:intergenic | 30.0% | |
AAGGTTCCAAATTAAGAGAT+TGG | - | chr1_3:20447169-20447188 | Msa0108800:CDS | 30.0% | |
GTATTATTGTGAAAGACTCT+AGG | - | chr1_3:20447199-20447218 | Msa0108800:CDS | 30.0% | |
TTTATCAAAATGAGAACTCG+AGG | - | chr1_3:20447397-20447416 | Msa0108800:CDS | 30.0% | |
GAAAGAAATAACAAACCCAT+GGG | + | chr1_3:20447550-20447569 | None:intergenic | 30.0% | |
TGAAAGAAATAACAAACCCA+TGG | + | chr1_3:20447551-20447570 | None:intergenic | 30.0% | |
! | AATCAAAAAGTGTACCTCTT+AGG | + | chr1_3:20447597-20447616 | None:intergenic | 30.0% |
CGACAAACCTATCAAAATAA+GGG | + | chr1_3:20447668-20447687 | None:intergenic | 30.0% | |
TGTGAATGTTTCGATAGTAG+TGG | + | chr1_3:20445470-20445489 | None:intergenic | 35.0% | |
GGTGAAATTCATCACAACAT+CGG | - | chr1_3:20445634-20445653 | Msa0108800:intron | 35.0% | |
AACTTCAGAATTATGCGCAA+TGG | + | chr1_3:20445714-20445733 | None:intergenic | 35.0% | |
ATCTGTTTCAACAACTTCGA+TGG | + | chr1_3:20445930-20445949 | None:intergenic | 35.0% | |
TTGAAACAGATCTACCGAAT+GGG | - | chr1_3:20445939-20445958 | Msa0108800:intron | 35.0% | |
GGAGTTCTTCACTCAAATAT+CGG | + | chr1_3:20445991-20446010 | None:intergenic | 35.0% | |
ATTATTATCCTCTCCATCTG+TGG | + | chr1_3:20446029-20446048 | None:intergenic | 35.0% | |
TTTGAGCTAAGAATTGTGCA+TGG | - | chr1_3:20446097-20446116 | Msa0108800:intron | 35.0% | |
GAATTGTGCATGGAAAGAAT+AGG | - | chr1_3:20446107-20446126 | Msa0108800:intron | 35.0% | |
GACTGGATTTGAAGAAAACA+AGG | - | chr1_3:20446129-20446148 | Msa0108800:intron | 35.0% | |
CTTTGGCATTCGAATAATTC+TGG | - | chr1_3:20446613-20446632 | Msa0108800:CDS | 35.0% | |
! | ATTATTACTAGCCTAGTGAG+TGG | - | chr1_3:20446664-20446683 | Msa0108800:CDS | 35.0% |
! | TTATTACTAGCCTAGTGAGT+GGG | - | chr1_3:20446665-20446684 | Msa0108800:CDS | 35.0% |
ACTTTGAACAGCATTCAACA+TGG | + | chr1_3:20446719-20446738 | None:intergenic | 35.0% | |
AATGCTGTTCAAAGTCAGAT+GGG | - | chr1_3:20446724-20446743 | Msa0108800:CDS | 35.0% | |
CACTTGTGATTGAGACTATT+GGG | + | chr1_3:20446837-20446856 | None:intergenic | 35.0% | |
TCACTTGTGATTGAGACTAT+TGG | + | chr1_3:20446838-20446857 | None:intergenic | 35.0% | |
!! | GACAACAATTTTGATGCTTG+TGG | - | chr1_3:20446856-20446875 | Msa0108800:CDS | 35.0% |
ACAGAAAAGCAAGCACTTAA+TGG | - | chr1_3:20447132-20447151 | Msa0108800:CDS | 35.0% | |
AAAAGCAAGCACTTAATGGA+TGG | - | chr1_3:20447136-20447155 | Msa0108800:CDS | 35.0% | |
TAGAACTTATGTAGCCTAAG+AGG | - | chr1_3:20447580-20447599 | Msa0108800:CDS | 35.0% | |
TCGAGAATTTCTCTCAATTC+TGG | - | chr1_3:20447629-20447648 | Msa0108800:CDS | 35.0% | |
AGAATTTCTCTCAATTCTGG+TGG | - | chr1_3:20447632-20447651 | Msa0108800:CDS | 35.0% | |
CCTATCAAAATAAGGGTTTC+CGG | + | chr1_3:20447661-20447680 | None:intergenic | 35.0% | |
GCGACAAACCTATCAAAATA+AGG | + | chr1_3:20447669-20447688 | None:intergenic | 35.0% | |
GCGACAAACTTGTGAAAATA+GGG | + | chr1_3:20447698-20447717 | None:intergenic | 35.0% | |
AGCGACAAACTTGTGAAAAT+AGG | + | chr1_3:20447699-20447718 | None:intergenic | 35.0% | |
GGGATGCAATACATAAAGTA+TGG | - | chr1_3:20447787-20447806 | Msa0108800:CDS | 35.0% | |
TGTGAATGTTTCGATAGTAG+TGG | + | chr1_3:20445470-20445489 | None:intergenic | 35.0% | |
GGTGAAATTCATCACAACAT+CGG | - | chr1_3:20445634-20445653 | Msa0108800:intron | 35.0% | |
AACTTCAGAATTATGCGCAA+TGG | + | chr1_3:20445714-20445733 | None:intergenic | 35.0% | |
ATCTGTTTCAACAACTTCGA+TGG | + | chr1_3:20445930-20445949 | None:intergenic | 35.0% | |
TTGAAACAGATCTACCGAAT+GGG | - | chr1_3:20445939-20445958 | Msa0108800:intron | 35.0% | |
GGAGTTCTTCACTCAAATAT+CGG | + | chr1_3:20445991-20446010 | None:intergenic | 35.0% | |
ATTATTATCCTCTCCATCTG+TGG | + | chr1_3:20446029-20446048 | None:intergenic | 35.0% | |
TTTGAGCTAAGAATTGTGCA+TGG | - | chr1_3:20446097-20446116 | Msa0108800:intron | 35.0% | |
GAATTGTGCATGGAAAGAAT+AGG | - | chr1_3:20446107-20446126 | Msa0108800:intron | 35.0% | |
GACTGGATTTGAAGAAAACA+AGG | - | chr1_3:20446129-20446148 | Msa0108800:intron | 35.0% | |
CTTTGGCATTCGAATAATTC+TGG | - | chr1_3:20446613-20446632 | Msa0108800:CDS | 35.0% | |
! | ATTATTACTAGCCTAGTGAG+TGG | - | chr1_3:20446664-20446683 | Msa0108800:CDS | 35.0% |
! | TTATTACTAGCCTAGTGAGT+GGG | - | chr1_3:20446665-20446684 | Msa0108800:CDS | 35.0% |
ACTTTGAACAGCATTCAACA+TGG | + | chr1_3:20446719-20446738 | None:intergenic | 35.0% | |
AATGCTGTTCAAAGTCAGAT+GGG | - | chr1_3:20446724-20446743 | Msa0108800:CDS | 35.0% | |
CACTTGTGATTGAGACTATT+GGG | + | chr1_3:20446837-20446856 | None:intergenic | 35.0% | |
TCACTTGTGATTGAGACTAT+TGG | + | chr1_3:20446838-20446857 | None:intergenic | 35.0% | |
!! | GACAACAATTTTGATGCTTG+TGG | - | chr1_3:20446856-20446875 | Msa0108800:CDS | 35.0% |
ACAGAAAAGCAAGCACTTAA+TGG | - | chr1_3:20447132-20447151 | Msa0108800:CDS | 35.0% | |
AAAAGCAAGCACTTAATGGA+TGG | - | chr1_3:20447136-20447155 | Msa0108800:CDS | 35.0% | |
TAGAACTTATGTAGCCTAAG+AGG | - | chr1_3:20447580-20447599 | Msa0108800:CDS | 35.0% | |
TCGAGAATTTCTCTCAATTC+TGG | - | chr1_3:20447629-20447648 | Msa0108800:CDS | 35.0% | |
AGAATTTCTCTCAATTCTGG+TGG | - | chr1_3:20447632-20447651 | Msa0108800:CDS | 35.0% | |
CCTATCAAAATAAGGGTTTC+CGG | + | chr1_3:20447661-20447680 | None:intergenic | 35.0% | |
GCGACAAACCTATCAAAATA+AGG | + | chr1_3:20447669-20447688 | None:intergenic | 35.0% | |
GCGACAAACTTGTGAAAATA+GGG | + | chr1_3:20447698-20447717 | None:intergenic | 35.0% | |
AGCGACAAACTTGTGAAAAT+AGG | + | chr1_3:20447699-20447718 | None:intergenic | 35.0% | |
GGGATGCAATACATAAAGTA+TGG | - | chr1_3:20447787-20447806 | Msa0108800:CDS | 35.0% | |
ATCTTCTGATAGCTTCGATC+CGG | + | chr1_3:20445536-20445555 | None:intergenic | 40.0% | |
AAGCTATCAGAAGATTCTCG+TGG | - | chr1_3:20445541-20445560 | Msa0108800:intron | 40.0% | |
!!! | AATCTATTTTCGGTGTCTGG+TGG | + | chr1_3:20445614-20445633 | None:intergenic | 40.0% |
ACCAGACACCGAAAATAGAT+TGG | - | chr1_3:20445613-20445632 | Msa0108800:intron | 40.0% | |
!!! | ACCAATCTATTTTCGGTGTC+TGG | + | chr1_3:20445617-20445636 | None:intergenic | 40.0% |
GCAATCTGAACTATGCTTCA+TGG | + | chr1_3:20445885-20445904 | None:intergenic | 40.0% | |
GCATAGTTCAGATTGCTACA+AGG | - | chr1_3:20445889-20445908 | Msa0108800:intron | 40.0% | |
GTTGAAACAGATCTACCGAA+TGG | - | chr1_3:20445938-20445957 | Msa0108800:intron | 40.0% | |
CCATTGCTTTCAATCCCATT+CGG | + | chr1_3:20445956-20445975 | None:intergenic | 40.0% | |
AGTCATAAAGACGCAGTATG+TGG | + | chr1_3:20446351-20446370 | None:intergenic | 40.0% | |
TAAGTTTGCACGCAGAAGTT+CGG | + | chr1_3:20446407-20446426 | None:intergenic | 40.0% | |
ATGCTTCACCACCATATTCT+TGG | + | chr1_3:20446450-20446469 | None:intergenic | 40.0% | |
CATTACTCGACAGTGTTTAG+AGG | - | chr1_3:20446495-20446514 | Msa0108800:CDS | 40.0% | |
AGACAGAATTATGAGGCTTC+AGG | + | chr1_3:20446561-20446580 | None:intergenic | 40.0% | |
AGACTTGTACGTGAAAGAGT+TGG | - | chr1_3:20446688-20446707 | Msa0108800:CDS | 40.0% | |
GAATGCTGTTCAAAGTCAGA+TGG | - | chr1_3:20446723-20446742 | Msa0108800:CDS | 40.0% | |
TTTGACATTGGATGTGACAG+AGG | - | chr1_3:20446784-20446803 | Msa0108800:CDS | 40.0% | |
TTCCTGTTCAATTTGCCTTC+AGG | - | chr1_3:20446888-20446907 | Msa0108800:CDS | 40.0% | |
ATCCTGAAGGCAAATTGAAC+AGG | + | chr1_3:20446893-20446912 | None:intergenic | 40.0% | |
TTGCCTTCAGGATTTCCAAA+TGG | - | chr1_3:20446900-20446919 | Msa0108800:CDS | 40.0% | |
TGCCTTCAGGATTTCCAAAT+GGG | - | chr1_3:20446901-20446920 | Msa0108800:CDS | 40.0% | |
TTCTAACAGTCTCTCCCATT+TGG | + | chr1_3:20446918-20446937 | None:intergenic | 40.0% | |
ACTTGCACACAACTAAGTGT+AGG | + | chr1_3:20447098-20447117 | None:intergenic | 40.0% | |
! | TGTGCAAGTGTGGTTTTTGT+GGG | - | chr1_3:20447109-20447128 | Msa0108800:CDS | 40.0% |
AATGGATGGCAACAACACAA+AGG | - | chr1_3:20447150-20447169 | Msa0108800:CDS | 40.0% | |
TTCACCATCCATTGTTCTAG+AGG | + | chr1_3:20447228-20447247 | None:intergenic | 40.0% | |
! | TCTAGAACAATGGATGGTGA+AGG | - | chr1_3:20447227-20447246 | Msa0108800:CDS | 40.0% |
ATCCTCGCATTTCACTCAAT+GGG | - | chr1_3:20447320-20447339 | Msa0108800:CDS | 40.0% | |
ATTGGAGGAGTAAACATGCA+TGG | - | chr1_3:20447367-20447386 | Msa0108800:CDS | 40.0% | |
TTGGAGGAGTAAACATGCAT+GGG | - | chr1_3:20447368-20447387 | Msa0108800:CDS | 40.0% | |
!!! | CCGGAAACCCTTATTTTGAT+AGG | - | chr1_3:20447658-20447677 | Msa0108800:CDS | 40.0% |
ATCTTCTGATAGCTTCGATC+CGG | + | chr1_3:20445536-20445555 | None:intergenic | 40.0% | |
AAGCTATCAGAAGATTCTCG+TGG | - | chr1_3:20445541-20445560 | Msa0108800:intron | 40.0% | |
!!! | AATCTATTTTCGGTGTCTGG+TGG | + | chr1_3:20445614-20445633 | None:intergenic | 40.0% |
ACCAGACACCGAAAATAGAT+TGG | - | chr1_3:20445613-20445632 | Msa0108800:intron | 40.0% | |
!!! | ACCAATCTATTTTCGGTGTC+TGG | + | chr1_3:20445617-20445636 | None:intergenic | 40.0% |
GCAATCTGAACTATGCTTCA+TGG | + | chr1_3:20445885-20445904 | None:intergenic | 40.0% | |
GCATAGTTCAGATTGCTACA+AGG | - | chr1_3:20445889-20445908 | Msa0108800:intron | 40.0% | |
GTTGAAACAGATCTACCGAA+TGG | - | chr1_3:20445938-20445957 | Msa0108800:intron | 40.0% | |
CCATTGCTTTCAATCCCATT+CGG | + | chr1_3:20445956-20445975 | None:intergenic | 40.0% | |
AGTCATAAAGACGCAGTATG+TGG | + | chr1_3:20446351-20446370 | None:intergenic | 40.0% | |
TAAGTTTGCACGCAGAAGTT+CGG | + | chr1_3:20446407-20446426 | None:intergenic | 40.0% | |
ATGCTTCACCACCATATTCT+TGG | + | chr1_3:20446450-20446469 | None:intergenic | 40.0% | |
CATTACTCGACAGTGTTTAG+AGG | - | chr1_3:20446495-20446514 | Msa0108800:CDS | 40.0% | |
AGACAGAATTATGAGGCTTC+AGG | + | chr1_3:20446561-20446580 | None:intergenic | 40.0% | |
AGACTTGTACGTGAAAGAGT+TGG | - | chr1_3:20446688-20446707 | Msa0108800:CDS | 40.0% | |
GAATGCTGTTCAAAGTCAGA+TGG | - | chr1_3:20446723-20446742 | Msa0108800:CDS | 40.0% | |
TTTGACATTGGATGTGACAG+AGG | - | chr1_3:20446784-20446803 | Msa0108800:CDS | 40.0% | |
TTCCTGTTCAATTTGCCTTC+AGG | - | chr1_3:20446888-20446907 | Msa0108800:CDS | 40.0% | |
ATCCTGAAGGCAAATTGAAC+AGG | + | chr1_3:20446893-20446912 | None:intergenic | 40.0% | |
TTGCCTTCAGGATTTCCAAA+TGG | - | chr1_3:20446900-20446919 | Msa0108800:CDS | 40.0% | |
TGCCTTCAGGATTTCCAAAT+GGG | - | chr1_3:20446901-20446920 | Msa0108800:CDS | 40.0% | |
TTCTAACAGTCTCTCCCATT+TGG | + | chr1_3:20446918-20446937 | None:intergenic | 40.0% | |
ACTTGCACACAACTAAGTGT+AGG | + | chr1_3:20447098-20447117 | None:intergenic | 40.0% | |
! | TGTGCAAGTGTGGTTTTTGT+GGG | - | chr1_3:20447109-20447128 | Msa0108800:CDS | 40.0% |
AATGGATGGCAACAACACAA+AGG | - | chr1_3:20447150-20447169 | Msa0108800:CDS | 40.0% | |
TTCACCATCCATTGTTCTAG+AGG | + | chr1_3:20447228-20447247 | None:intergenic | 40.0% | |
! | TCTAGAACAATGGATGGTGA+AGG | - | chr1_3:20447227-20447246 | Msa0108800:CDS | 40.0% |
ATCCTCGCATTTCACTCAAT+GGG | - | chr1_3:20447320-20447339 | Msa0108800:CDS | 40.0% | |
ATTGGAGGAGTAAACATGCA+TGG | - | chr1_3:20447367-20447386 | Msa0108800:CDS | 40.0% | |
TTGGAGGAGTAAACATGCAT+GGG | - | chr1_3:20447368-20447387 | Msa0108800:CDS | 40.0% | |
!!! | CCGGAAACCCTTATTTTGAT+AGG | - | chr1_3:20447658-20447677 | Msa0108800:CDS | 40.0% |
ATGCGCAATGGCTTCTTTCT+CGG | + | chr1_3:20445702-20445721 | None:intergenic | 45.0% | |
!! | CCTGGACTGCTTTTGCAAAA+TGG | + | chr1_3:20445737-20445756 | None:intergenic | 45.0% |
! | CCATTTTGCAAAAGCAGTCC+AGG | - | chr1_3:20445734-20445753 | Msa0108800:intron | 45.0% |
GTTCAGCAGGTTCTTGTAGT+GGG | - | chr1_3:20445756-20445775 | Msa0108800:intron | 45.0% | |
TTCAGCAGGTTCTTGTAGTG+GGG | - | chr1_3:20445757-20445776 | Msa0108800:intron | 45.0% | |
CCGAATGGGATTGAAAGCAA+TGG | - | chr1_3:20445953-20445972 | Msa0108800:intron | 45.0% | |
GGGATTGAAAGCAATGGAGT+AGG | - | chr1_3:20445959-20445978 | Msa0108800:intron | 45.0% | |
GAGTGAAGAACTCCATGTTC+CGG | - | chr1_3:20445997-20446016 | Msa0108800:intron | 45.0% | |
GTGCATGGAAAGAATAGGAC+TGG | - | chr1_3:20446112-20446131 | Msa0108800:intron | 45.0% | |
!! | AGTGCTGATTGTGCTGAACA+CGG | - | chr1_3:20446153-20446172 | Msa0108800:CDS | 45.0% |
AGTATGTGGCGTTTATCTCC+CGG | + | chr1_3:20446337-20446356 | None:intergenic | 45.0% | |
CTCCCATTTGGAAATCCTGA+AGG | + | chr1_3:20446906-20446925 | None:intergenic | 45.0% | |
! | ACCTACCTTGCATTGACAAG+TGG | - | chr1_3:20446965-20446984 | Msa0108800:CDS | 45.0% |
ATGAGCCACTTGTCAATGCA+AGG | + | chr1_3:20446973-20446992 | None:intergenic | 45.0% | |
GCTCACTGTCTCTGCATAAT+GGG | + | chr1_3:20447011-20447030 | None:intergenic | 45.0% | |
TGCTCACTGTCTCTGCATAA+TGG | + | chr1_3:20447012-20447031 | None:intergenic | 45.0% | |
CACACAACTAAGTGTAGGCT+TGG | + | chr1_3:20447093-20447112 | None:intergenic | 45.0% | |
CACTTAGTTGTGTGCAAGTG+TGG | - | chr1_3:20447099-20447118 | Msa0108800:CDS | 45.0% | |
! | GTGTGCAAGTGTGGTTTTTG+TGG | - | chr1_3:20447108-20447127 | Msa0108800:CDS | 45.0% |
!! | CTAGGCTACCTCTAGAACAA+TGG | - | chr1_3:20447217-20447236 | Msa0108800:CDS | 45.0% |
!! | GCTACCTCTAGAACAATGGA+TGG | - | chr1_3:20447221-20447240 | Msa0108800:CDS | 45.0% |
CATCCTCGCATTTCACTCAA+TGG | - | chr1_3:20447319-20447338 | Msa0108800:CDS | 45.0% | |
ATCCCATTGAGTGAAATGCG+AGG | + | chr1_3:20447325-20447344 | None:intergenic | 45.0% | |
CATTTCACTCAATGGGATCC+AGG | - | chr1_3:20447327-20447346 | Msa0108800:CDS | 45.0% | |
!! | CTCTCAATTCTGGTGGATTC+CGG | - | chr1_3:20447639-20447658 | Msa0108800:CDS | 45.0% |
CTTCCGTACTGCGTCAATAT+GGG | - | chr1_3:20447767-20447786 | Msa0108800:CDS | 45.0% | |
CATCCCATATTGACGCAGTA+CGG | + | chr1_3:20447773-20447792 | None:intergenic | 45.0% | |
ATGCGCAATGGCTTCTTTCT+CGG | + | chr1_3:20445702-20445721 | None:intergenic | 45.0% | |
!! | CCTGGACTGCTTTTGCAAAA+TGG | + | chr1_3:20445737-20445756 | None:intergenic | 45.0% |
! | CCATTTTGCAAAAGCAGTCC+AGG | - | chr1_3:20445734-20445753 | Msa0108800:intron | 45.0% |
GTTCAGCAGGTTCTTGTAGT+GGG | - | chr1_3:20445756-20445775 | Msa0108800:intron | 45.0% | |
TTCAGCAGGTTCTTGTAGTG+GGG | - | chr1_3:20445757-20445776 | Msa0108800:intron | 45.0% | |
CCGAATGGGATTGAAAGCAA+TGG | - | chr1_3:20445953-20445972 | Msa0108800:intron | 45.0% | |
GGGATTGAAAGCAATGGAGT+AGG | - | chr1_3:20445959-20445978 | Msa0108800:intron | 45.0% | |
GAGTGAAGAACTCCATGTTC+CGG | - | chr1_3:20445997-20446016 | Msa0108800:intron | 45.0% | |
GTGCATGGAAAGAATAGGAC+TGG | - | chr1_3:20446112-20446131 | Msa0108800:intron | 45.0% | |
!! | AGTGCTGATTGTGCTGAACA+CGG | - | chr1_3:20446153-20446172 | Msa0108800:CDS | 45.0% |
AGTATGTGGCGTTTATCTCC+CGG | + | chr1_3:20446337-20446356 | None:intergenic | 45.0% | |
CTCCCATTTGGAAATCCTGA+AGG | + | chr1_3:20446906-20446925 | None:intergenic | 45.0% | |
! | ACCTACCTTGCATTGACAAG+TGG | - | chr1_3:20446965-20446984 | Msa0108800:CDS | 45.0% |
ATGAGCCACTTGTCAATGCA+AGG | + | chr1_3:20446973-20446992 | None:intergenic | 45.0% | |
GCTCACTGTCTCTGCATAAT+GGG | + | chr1_3:20447011-20447030 | None:intergenic | 45.0% | |
TGCTCACTGTCTCTGCATAA+TGG | + | chr1_3:20447012-20447031 | None:intergenic | 45.0% | |
CACACAACTAAGTGTAGGCT+TGG | + | chr1_3:20447093-20447112 | None:intergenic | 45.0% | |
CACTTAGTTGTGTGCAAGTG+TGG | - | chr1_3:20447099-20447118 | Msa0108800:CDS | 45.0% | |
! | GTGTGCAAGTGTGGTTTTTG+TGG | - | chr1_3:20447108-20447127 | Msa0108800:CDS | 45.0% |
!! | CTAGGCTACCTCTAGAACAA+TGG | - | chr1_3:20447217-20447236 | Msa0108800:CDS | 45.0% |
!! | GCTACCTCTAGAACAATGGA+TGG | - | chr1_3:20447221-20447240 | Msa0108800:CDS | 45.0% |
CATCCTCGCATTTCACTCAA+TGG | - | chr1_3:20447319-20447338 | Msa0108800:CDS | 45.0% | |
ATCCCATTGAGTGAAATGCG+AGG | + | chr1_3:20447325-20447344 | None:intergenic | 45.0% | |
CATTTCACTCAATGGGATCC+AGG | - | chr1_3:20447327-20447346 | Msa0108800:CDS | 45.0% | |
!! | CTCTCAATTCTGGTGGATTC+CGG | - | chr1_3:20447639-20447658 | Msa0108800:CDS | 45.0% |
CTTCCGTACTGCGTCAATAT+GGG | - | chr1_3:20447767-20447786 | Msa0108800:CDS | 45.0% | |
CATCCCATATTGACGCAGTA+CGG | + | chr1_3:20447773-20447792 | None:intergenic | 45.0% | |
AGAGTCGGAGTGAAAACACG+TGG | + | chr1_3:20445494-20445513 | None:intergenic | 50.0% | |
TAGCTTCGATCCGGAGGTTT+GGG | + | chr1_3:20445527-20445546 | None:intergenic | 50.0% | |
ATAGCTTCGATCCGGAGGTT+TGG | + | chr1_3:20445528-20445547 | None:intergenic | 50.0% | |
TTCTGATAGCTTCGATCCGG+AGG | + | chr1_3:20445533-20445552 | None:intergenic | 50.0% | |
AAAAGCAGTCCAGGTTCAGC+AGG | - | chr1_3:20445743-20445762 | Msa0108800:intron | 50.0% | |
CTACAAGAACCTGCTGAACC+TGG | + | chr1_3:20445755-20445774 | None:intergenic | 50.0% | |
GGTTCAGCAGGTTCTTGTAG+TGG | - | chr1_3:20445755-20445774 | Msa0108800:intron | 50.0% | |
TGAAGAACTCCATGTTCCGG+AGG | - | chr1_3:20446000-20446019 | Msa0108800:intron | 50.0% | |
GATTGTGCTGAACACGGTCA+TGG | - | chr1_3:20446159-20446178 | Msa0108800:CDS | 50.0% | |
TGAACACGGTCATGGCTGAA+AGG | - | chr1_3:20446167-20446186 | Msa0108800:CDS | 50.0% | |
TCGGTTCAGCTACCTTCAGT+AGG | - | chr1_3:20446209-20446228 | Msa0108800:CDS | 50.0% | |
CGGTTCAGCTACCTTCAGTA+GGG | - | chr1_3:20446210-20446229 | Msa0108800:CDS | 50.0% | |
!! | ATCGAGAGCATCCCTACTGA+AGG | + | chr1_3:20446224-20446243 | None:intergenic | 50.0% |
TTCAGTAGGGATGCTCTCGA+TGG | - | chr1_3:20446223-20446242 | Msa0108800:CDS | 50.0% | |
ACTTGTCGATAAGCACGACC+CGG | - | chr1_3:20446315-20446334 | Msa0108800:CDS | 50.0% | |
GTATGTGGCGTTTATCTCCC+GGG | + | chr1_3:20446336-20446355 | None:intergenic | 50.0% | |
GTACAAGTCTCCCACTCACT+AGG | + | chr1_3:20446678-20446697 | None:intergenic | 50.0% | |
GTTCAAAGTCAGATGGGTGC+AGG | - | chr1_3:20446730-20446749 | Msa0108800:CDS | 50.0% | |
GGATGTGACAGAGGCTTACT+AGG | - | chr1_3:20446793-20446812 | Msa0108800:CDS | 50.0% | |
GCCACTTGTCAATGCAAGGT+AGG | + | chr1_3:20446969-20446988 | None:intergenic | 50.0% | |
GACAAGTGGCTCATCAAGCA+TGG | - | chr1_3:20446979-20446998 | Msa0108800:CDS | 50.0% | |
TTCACTCAATGGGATCCAGG+AGG | - | chr1_3:20447330-20447349 | Msa0108800:CDS | 50.0% | |
TCACTCAATGGGATCCAGGA+GGG | - | chr1_3:20447331-20447350 | Msa0108800:CDS | 50.0% | |
GAGGGTGGTCTCTTGTTCAT+TGG | - | chr1_3:20447349-20447368 | Msa0108800:CDS | 50.0% | |
GGTGGTCTCTTGTTCATTGG+AGG | - | chr1_3:20447352-20447371 | Msa0108800:CDS | 50.0% | |
AGAGGTGGAAGAGACTGATG+AGG | - | chr1_3:20447431-20447450 | Msa0108800:CDS | 50.0% | |
GAGGTGGAAGAGACTGATGA+GGG | - | chr1_3:20447432-20447451 | Msa0108800:CDS | 50.0% | |
TGACGCAGTACGGAAGCTTA+GGG | + | chr1_3:20447763-20447782 | None:intergenic | 50.0% | |
TTGACGCAGTACGGAAGCTT+AGG | + | chr1_3:20447764-20447783 | None:intergenic | 50.0% | |
GCTTCCGTACTGCGTCAATA+TGG | - | chr1_3:20447766-20447785 | Msa0108800:CDS | 50.0% | |
AGAGTCGGAGTGAAAACACG+TGG | + | chr1_3:20445494-20445513 | None:intergenic | 50.0% | |
TAGCTTCGATCCGGAGGTTT+GGG | + | chr1_3:20445527-20445546 | None:intergenic | 50.0% | |
ATAGCTTCGATCCGGAGGTT+TGG | + | chr1_3:20445528-20445547 | None:intergenic | 50.0% | |
TTCTGATAGCTTCGATCCGG+AGG | + | chr1_3:20445533-20445552 | None:intergenic | 50.0% | |
AAAAGCAGTCCAGGTTCAGC+AGG | - | chr1_3:20445743-20445762 | Msa0108800:intron | 50.0% | |
CTACAAGAACCTGCTGAACC+TGG | + | chr1_3:20445755-20445774 | None:intergenic | 50.0% | |
GGTTCAGCAGGTTCTTGTAG+TGG | - | chr1_3:20445755-20445774 | Msa0108800:intron | 50.0% | |
TGAAGAACTCCATGTTCCGG+AGG | - | chr1_3:20446000-20446019 | Msa0108800:intron | 50.0% | |
GATTGTGCTGAACACGGTCA+TGG | - | chr1_3:20446159-20446178 | Msa0108800:CDS | 50.0% | |
TGAACACGGTCATGGCTGAA+AGG | - | chr1_3:20446167-20446186 | Msa0108800:CDS | 50.0% | |
TCGGTTCAGCTACCTTCAGT+AGG | - | chr1_3:20446209-20446228 | Msa0108800:CDS | 50.0% | |
CGGTTCAGCTACCTTCAGTA+GGG | - | chr1_3:20446210-20446229 | Msa0108800:CDS | 50.0% | |
!! | ATCGAGAGCATCCCTACTGA+AGG | + | chr1_3:20446224-20446243 | None:intergenic | 50.0% |
TTCAGTAGGGATGCTCTCGA+TGG | - | chr1_3:20446223-20446242 | Msa0108800:CDS | 50.0% | |
ACTTGTCGATAAGCACGACC+CGG | - | chr1_3:20446315-20446334 | Msa0108800:CDS | 50.0% | |
GTATGTGGCGTTTATCTCCC+GGG | + | chr1_3:20446336-20446355 | None:intergenic | 50.0% | |
GTACAAGTCTCCCACTCACT+AGG | + | chr1_3:20446678-20446697 | None:intergenic | 50.0% | |
GTTCAAAGTCAGATGGGTGC+AGG | - | chr1_3:20446730-20446749 | Msa0108800:CDS | 50.0% | |
GGATGTGACAGAGGCTTACT+AGG | - | chr1_3:20446793-20446812 | Msa0108800:CDS | 50.0% | |
GCCACTTGTCAATGCAAGGT+AGG | + | chr1_3:20446969-20446988 | None:intergenic | 50.0% | |
GACAAGTGGCTCATCAAGCA+TGG | - | chr1_3:20446979-20446998 | Msa0108800:CDS | 50.0% | |
TTCACTCAATGGGATCCAGG+AGG | - | chr1_3:20447330-20447349 | Msa0108800:CDS | 50.0% | |
TCACTCAATGGGATCCAGGA+GGG | - | chr1_3:20447331-20447350 | Msa0108800:CDS | 50.0% | |
GAGGGTGGTCTCTTGTTCAT+TGG | - | chr1_3:20447349-20447368 | Msa0108800:CDS | 50.0% | |
GGTGGTCTCTTGTTCATTGG+AGG | - | chr1_3:20447352-20447371 | Msa0108800:CDS | 50.0% | |
AGAGGTGGAAGAGACTGATG+AGG | - | chr1_3:20447431-20447450 | Msa0108800:CDS | 50.0% | |
GAGGTGGAAGAGACTGATGA+GGG | - | chr1_3:20447432-20447451 | Msa0108800:CDS | 50.0% | |
TGACGCAGTACGGAAGCTTA+GGG | + | chr1_3:20447763-20447782 | None:intergenic | 50.0% | |
TTGACGCAGTACGGAAGCTT+AGG | + | chr1_3:20447764-20447783 | None:intergenic | 50.0% | |
GCTTCCGTACTGCGTCAATA+TGG | - | chr1_3:20447766-20447785 | Msa0108800:CDS | 50.0% | |
!!! | TTTTCGGTGTCTGGTGGTGC+AGG | + | chr1_3:20445608-20445627 | None:intergenic | 55.0% |
! | GCTTCTTTCTCGGCACTGAG+GGG | + | chr1_3:20445692-20445711 | None:intergenic | 55.0% |
! | GGCTTCTTTCTCGGCACTGA+GGG | + | chr1_3:20445693-20445712 | None:intergenic | 55.0% |
TGGCTTCTTTCTCGGCACTG+AGG | + | chr1_3:20445694-20445713 | None:intergenic | 55.0% | |
CTTGTCGATAAGCACGACCC+GGG | - | chr1_3:20446316-20446335 | Msa0108800:CDS | 55.0% | |
TGAACAAGAGACCACCCTCC+TGG | + | chr1_3:20447348-20447367 | None:intergenic | 55.0% | |
CTCGAGGTCGAGTTCTTCAG+AGG | - | chr1_3:20447413-20447432 | Msa0108800:CDS | 55.0% | |
GAGGTCGAGTTCTTCAGAGG+TGG | - | chr1_3:20447416-20447435 | Msa0108800:CDS | 55.0% | |
!!! | TTTTCGGTGTCTGGTGGTGC+AGG | + | chr1_3:20445608-20445627 | None:intergenic | 55.0% |
! | GCTTCTTTCTCGGCACTGAG+GGG | + | chr1_3:20445692-20445711 | None:intergenic | 55.0% |
! | GGCTTCTTTCTCGGCACTGA+GGG | + | chr1_3:20445693-20445712 | None:intergenic | 55.0% |
TGGCTTCTTTCTCGGCACTG+AGG | + | chr1_3:20445694-20445713 | None:intergenic | 55.0% | |
CTTGTCGATAAGCACGACCC+GGG | - | chr1_3:20446316-20446335 | Msa0108800:CDS | 55.0% | |
TGAACAAGAGACCACCCTCC+TGG | + | chr1_3:20447348-20447367 | None:intergenic | 55.0% | |
CTCGAGGTCGAGTTCTTCAG+AGG | - | chr1_3:20447413-20447432 | Msa0108800:CDS | 55.0% | |
GAGGTCGAGTTCTTCAGAGG+TGG | - | chr1_3:20447416-20447435 | Msa0108800:CDS | 55.0% | |
! | TTGGGTAGTGGCGGCAGAGT+CGG | + | chr1_3:20445509-20445528 | None:intergenic | 60.0% |
! | TCCGGAGGTTTGGGTAGTGG+CGG | + | chr1_3:20445518-20445537 | None:intergenic | 60.0% |
CGATCCGGAGGTTTGGGTAG+TGG | + | chr1_3:20445521-20445540 | None:intergenic | 60.0% | |
! | TGCAGGAAGTGGTGGAGGCA+AGG | + | chr1_3:20445591-20445610 | None:intergenic | 60.0% |
! | TCTGGTGGTGCAGGAAGTGG+TGG | + | chr1_3:20445599-20445618 | None:intergenic | 60.0% |
! | GTGTCTGGTGGTGCAGGAAG+TGG | + | chr1_3:20445602-20445621 | None:intergenic | 60.0% |
TCTCCATCTGTGGCAGCCTC+CGG | + | chr1_3:20446019-20446038 | None:intergenic | 60.0% | |
CTCAATGGGATCCAGGAGGG+TGG | - | chr1_3:20447334-20447353 | Msa0108800:CDS | 60.0% | |
! | TTGGGTAGTGGCGGCAGAGT+CGG | + | chr1_3:20445509-20445528 | None:intergenic | 60.0% |
! | TCCGGAGGTTTGGGTAGTGG+CGG | + | chr1_3:20445518-20445537 | None:intergenic | 60.0% |
CGATCCGGAGGTTTGGGTAG+TGG | + | chr1_3:20445521-20445540 | None:intergenic | 60.0% | |
! | TGCAGGAAGTGGTGGAGGCA+AGG | + | chr1_3:20445591-20445610 | None:intergenic | 60.0% |
! | TCTGGTGGTGCAGGAAGTGG+TGG | + | chr1_3:20445599-20445618 | None:intergenic | 60.0% |
! | GTGTCTGGTGGTGCAGGAAG+TGG | + | chr1_3:20445602-20445621 | None:intergenic | 60.0% |
TCTCCATCTGTGGCAGCCTC+CGG | + | chr1_3:20446019-20446038 | None:intergenic | 60.0% | |
CTCAATGGGATCCAGGAGGG+TGG | - | chr1_3:20447334-20447353 | Msa0108800:CDS | 60.0% | |
GCCGCCACTACCCAAACCTC+CGG | - | chr1_3:20445514-20445533 | Msa0108800:intron | 65.0% | |
GGTGGTGCAGGAAGTGGTGG+AGG | + | chr1_3:20445596-20445615 | None:intergenic | 65.0% | |
CTGTGGCAGCCTCCGGAACA+TGG | + | chr1_3:20446012-20446031 | None:intergenic | 65.0% | |
GTTCCGGAGGCTGCCACAGA+TGG | - | chr1_3:20446013-20446032 | Msa0108800:intron | 65.0% | |
GGAGGCTGCCACAGATGGAG+AGG | - | chr1_3:20446018-20446037 | Msa0108800:intron | 65.0% | |
GTTGCTGCAGCAGCTCACGC+CGG | - | chr1_3:20447841-20447860 | Msa0108800:CDS | 65.0% | |
TTGCTGCAGCAGCTCACGCC+GGG | - | chr1_3:20447842-20447861 | Msa0108800:CDS | 65.0% | |
GCCGCCACTACCCAAACCTC+CGG | - | chr1_3:20445514-20445533 | Msa0108800:intron | 65.0% | |
GGTGGTGCAGGAAGTGGTGG+AGG | + | chr1_3:20445596-20445615 | None:intergenic | 65.0% | |
CTGTGGCAGCCTCCGGAACA+TGG | + | chr1_3:20446012-20446031 | None:intergenic | 65.0% | |
GTTCCGGAGGCTGCCACAGA+TGG | - | chr1_3:20446013-20446032 | Msa0108800:intron | 65.0% | |
GGAGGCTGCCACAGATGGAG+AGG | - | chr1_3:20446018-20446037 | Msa0108800:intron | 65.0% | |
GTTGCTGCAGCAGCTCACGC+CGG | - | chr1_3:20447841-20447860 | Msa0108800:CDS | 65.0% | |
TTGCTGCAGCAGCTCACGCC+GGG | - | chr1_3:20447842-20447861 | Msa0108800:CDS | 65.0% | |
TGCTGCAGCAGCTCACGCCG+GGG | - | chr1_3:20447843-20447862 | Msa0108800:CDS | 70.0% | |
TGCTGCAGCAGCTCACGCCG+GGG | - | chr1_3:20447843-20447862 | Msa0108800:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_3 | gene | 20445437 | 20447870 | 20445437 | ID=Msa0108800;Name=Msa0108800 |
chr1_3 | mRNA | 20445437 | 20447870 | 20445437 | ID=Msa0108800-mRNA-1;Parent=Msa0108800;Name=Msa0108800-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0|0|0.5|1|1|2|0|584 |
chr1_3 | exon | 20446136 | 20447870 | 20446136 | ID=Msa0108800-mRNA-1:exon:7420;Parent=Msa0108800-mRNA-1 |
chr1_3 | exon | 20445437 | 20445456 | 20445437 | ID=Msa0108800-mRNA-1:exon:7419;Parent=Msa0108800-mRNA-1 |
chr1_3 | CDS | 20446136 | 20447870 | 20446136 | ID=Msa0108800-mRNA-1:cds;Parent=Msa0108800-mRNA-1 |
chr1_3 | CDS | 20445437 | 20445456 | 20445437 | ID=Msa0108800-mRNA-1:cds;Parent=Msa0108800-mRNA-1 |
Gene Sequence |
Protein sequence |