AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0108800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0108800 MtrunA17_Chr5g0437131 84.667 300 38 1 88 379 239 538 8.24e-163 481
Msa0108800 MtrunA17_Chr8g0371291 78.667 150 25 1 379 528 80 222 2.82e-79 249
Msa0108800 MtrunA17_Chr6g0480541 69.714 175 45 1 213 379 859 1033 1.57e-73 255
Msa0108800 MtrunA17_Chr5g0406031 68.000 150 47 1 379 528 83 231 2.33e-65 213
Msa0108800 MtrunA17_Chr6g0480481 52.174 161 33 2 227 379 9 133 1.73e-41 149
Msa0108800 MtrunA17_Chr8g0369241 38.378 185 95 5 210 379 91 271 3.25e-24 107
Msa0108800 MtrunA17_Chr4g0060981 35.443 158 86 4 379 528 67 216 9.78e-22 94.0
Msa0108800 MtrunA17_Chr3g0126701 77.358 53 12 0 528 580 510 562 2.06e-20 95.9
Msa0108800 MtrunA17_Chr5g0444161 33.333 132 66 6 408 528 107 227 9.45e-14 71.2
Msa0108800 MtrunA17_Chr1g0147121 61.224 49 19 0 532 580 483 531 9.94e-14 74.7
Msa0108800 MtrunA17_Chr5g0444141 33.333 123 78 3 408 528 142 262 2.05e-12 67.8
Msa0108800 MtrunA17_Chr1g0210061 33.562 146 80 4 247 379 605 746 2.13e-12 70.5
Msa0108800 MtrunA17_Chr8g0388231 43.421 76 42 1 457 532 309 383 3.68e-12 68.6
Msa0108800 MtrunA17_Chr4g0067591 35.065 77 45 1 452 528 75 146 4.16e-12 67.0
Msa0108800 MtrunA17_Chr6g0451031 48.889 45 23 0 484 528 67 111 4.44e-12 63.5
Msa0108800 MtrunA17_Chr3g0128771 41.026 78 39 2 456 530 90 163 5.85e-12 64.7
Msa0108800 MtrunA17_Chr7g0246761 32.558 129 64 5 406 528 21 132 6.47e-12 64.7
Msa0108800 MtrunA17_Chr5g0411081 37.209 86 47 1 443 528 112 190 8.74e-12 67.0
Msa0108800 MtrunA17_Chr8g0366561 43.243 74 41 1 457 530 114 186 1.14e-11 66.6
Msa0108800 MtrunA17_Chr8g0369571 48.889 45 23 0 484 528 88 132 2.95e-11 62.8
Msa0108800 MtrunA17_Chr5g0437361 37.209 86 53 1 450 535 68 152 4.64e-11 62.0
Msa0108800 MtrunA17_Chr6g0451051 31.915 94 61 1 456 549 39 129 5.82e-11 61.2
Msa0108800 MtrunA17_Chr6g0451041 42.188 64 37 0 486 549 18 81 8.07e-11 58.9
Msa0108800 MtrunA17_Chr8g0383921 32.692 104 65 2 455 558 109 207 9.32e-11 62.0
Msa0108800 MtrunA17_Chr8g0383871 33.010 103 64 2 456 558 111 208 9.83e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0108800 AT2G40120.1 72.941 170 38 1 218 379 227 396 4.09e-77 255
Msa0108800 AT1G73460.2 60.577 208 71 3 183 379 786 993 1.41e-70 247
Msa0108800 AT1G73460.1 60.577 208 71 3 183 379 786 993 1.41e-70 247
Msa0108800 AT1G73450.1 66.857 175 50 1 213 379 802 976 1.81e-70 246
Msa0108800 AT3G17750.1 64.571 175 54 1 213 379 788 962 1.29e-66 235
Msa0108800 AT4G35840.1 64.667 150 53 0 379 528 84 233 1.12e-62 206
Msa0108800 AT2G17730.1 64.000 150 54 0 379 528 89 238 2.84e-62 206
Msa0108800 AT5G66070.5 63.333 150 50 1 379 528 74 218 4.91e-59 196
Msa0108800 AT5G66070.1 63.333 150 50 1 379 528 74 218 4.91e-59 196
Msa0108800 AT2G17730.2 63.636 143 52 0 379 521 89 231 3.25e-57 192
Msa0108800 AT4G35840.2 53.297 182 53 1 379 528 84 265 5.51e-56 190
Msa0108800 AT5G66070.2 54.598 174 50 2 379 528 74 242 1.63e-53 182
Msa0108800 AT5G66070.4 58.929 112 41 1 380 491 75 181 4.28e-36 134
Msa0108800 AT5G66070.3 48.175 137 42 2 379 491 74 205 6.43e-29 114
Msa0108800 AT1G74410.1 36.000 150 93 1 381 530 74 220 2.88e-24 101
Msa0108800 AT5G35980.2 37.569 181 94 5 228 393 92 268 4.80e-23 104
Msa0108800 AT5G35980.3 37.705 183 91 6 228 393 57 233 4.82e-23 104
Msa0108800 AT5G35980.1 37.705 183 91 6 228 393 92 268 5.13e-23 104
Msa0108800 AT3G20395.1 33.333 123 76 2 408 529 97 214 7.66e-16 77.4
Msa0108800 AT3G18773.1 39.560 91 49 2 451 537 97 185 2.72e-13 70.1
Msa0108800 AT5G53430.1 52.632 57 27 0 526 582 486 542 1.02e-12 72.0
Msa0108800 AT1G49200.1 41.892 74 41 1 455 528 107 178 1.34e-12 68.2
Msa0108800 AT2G17450.1 37.179 78 45 1 455 528 67 144 3.89e-12 65.9
Msa0108800 AT5G05280.1 41.333 75 40 1 456 530 87 157 4.55e-12 65.5
Msa0108800 AT4G27910.1 52.941 51 24 0 532 582 477 527 1.30e-11 68.2
Msa0108800 AT5G17600.1 40.000 90 49 2 439 528 100 184 2.69e-11 65.9
Msa0108800 AT1G49210.1 40.541 74 42 1 455 528 106 177 2.85e-11 63.9
Msa0108800 AT5G01880.1 41.558 77 41 2 455 530 76 149 4.68e-11 62.0
Msa0108800 AT3G16720.1 36.364 77 45 1 452 528 89 161 5.20e-11 64.7
Msa0108800 AT5G53110.1 35.443 79 50 1 457 535 302 379 7.98e-11 64.7
Msa0108800 AT5G10380.1 37.209 86 50 2 443 528 96 177 8.14e-11 63.9
Msa0108800 AT2G27940.1 39.241 79 38 2 456 531 114 185 8.27e-11 62.8

Find 119 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTAGCTACCTTAATTTAA+AGG 0.143063 1_3:-20447495 Msa0108800:CDS
CTTTGGCATTCGAATAATTC+TGG 0.197162 1_3:-20446672 Msa0108800:CDS
CATAAATTCAACCAAGAATA+TGG 0.227119 1_3:-20446849 Msa0108800:CDS
GCTTAATTTCCTTTAAATTA+AGG 0.237843 1_3:+20447486 None:intergenic
ATGCTTCACCACCATATTCT+TGG 0.272074 1_3:+20446838 None:intergenic
TTAAGGTAGCTAATGTTTAT+AGG 0.288253 1_3:+20447503 None:intergenic
TGCTCACTGTCTCTGCATAA+TGG 0.302576 1_3:+20446276 None:intergenic
ACAGAAAAGCAAGCACTTAA+TGG 0.303631 1_3:-20446153 Msa0108800:CDS
TTCCTGTTCAATTTGCCTTC+AGG 0.305106 1_3:-20446397 Msa0108800:CDS
TTGTATGTTCTATTGATCTT+TGG 0.316674 1_3:-20446689 Msa0108800:CDS
CATTACTCGACAGTGTTTAG+AGG 0.319594 1_3:-20446790 Msa0108800:CDS
GGTTAAACGTATGATGATAA+TGG 0.326660 1_3:+20446340 None:intergenic
CATTCGAATAATTCTGGAAT+AGG 0.333342 1_3:-20446666 Msa0108800:CDS
CACTTGTGATTGAGACTATT+GGG 0.340792 1_3:+20446451 None:intergenic
GTTAAACGTATGATGATAAT+GGG 0.346709 1_3:+20446341 None:intergenic
TAGCTTCGATCCGGAGGTTT+GGG 0.350467 1_3:+20447761 None:intergenic
ATGCGCAATGGCTTCTTTCT+CGG 0.367067 1_3:+20447586 None:intergenic
TCACTTGTGATTGAGACTAT+TGG 0.368196 1_3:+20446450 None:intergenic
ATAGCTTCGATCCGGAGGTT+TGG 0.378202 1_3:+20447760 None:intergenic
TTCTAACAGTCTCTCCCATT+TGG 0.383802 1_3:+20446370 None:intergenic
GCTCACTGTCTCTGCATAAT+GGG 0.397596 1_3:+20446277 None:intergenic
GCAATCTGAACTATGCTTCA+TGG 0.399375 1_3:+20447403 None:intergenic
AGACAGAATTATGAGGCTTC+AGG 0.401315 1_3:+20446727 None:intergenic
ATTGCAATATTTACATAACT+TGG 0.409904 1_3:-20446766 Msa0108800:CDS
TAAGAAGCTTGATTTCATCT+AGG 0.411237 1_3:+20446994 None:intergenic
TGCCTTCAGGATTTCCAAAT+GGG 0.419108 1_3:-20446384 Msa0108800:CDS
GAGTGAAGAACTCCATGTTC+CGG 0.421411 1_3:-20447288 Msa0108800:CDS
CGATCCGGAGGTTTGGGTAG+TGG 0.425881 1_3:+20447767 None:intergenic
TTTCAACATATCTTTGACAT+TGG 0.427382 1_3:-20446513 Msa0108800:CDS
GTTCAGCAGGTTCTTGTAGT+GGG 0.431132 1_3:-20447529 Msa0108800:CDS
ATCCTGAAGGCAAATTGAAC+AGG 0.433788 1_3:+20446395 None:intergenic
GTTGCTGCAGCAGCTCACGC+CGG 0.436700 1_3:-20445444 Msa0108800:intron
GGATGTGACAGAGGCTTACT+AGG 0.444182 1_3:-20446492 Msa0108800:CDS
GGCTTCTTTCTCGGCACTGA+GGG 0.450284 1_3:+20447595 None:intergenic
TCTGGTGGTGCAGGAAGTGG+TGG 0.450710 1_3:+20447689 None:intergenic
TATTTCAACAAACATGTAAT+GGG 0.455848 1_3:+20447619 None:intergenic
TTATGACTATTTCTACCATC+AGG 0.460782 1_3:-20446922 Msa0108800:CDS
TCTCCATCTGTGGCAGCCTC+CGG 0.462617 1_3:+20447269 None:intergenic
TTGCTGCAGCAGCTCACGCC+GGG 0.462792 1_3:-20445443 Msa0108800:intron
TTGCCTTCAGGATTTCCAAA+TGG 0.467728 1_3:-20446385 Msa0108800:CDS
CTACAAGAACCTGCTGAACC+TGG 0.473048 1_3:+20447533 None:intergenic
GTGTCTGGTGGTGCAGGAAG+TGG 0.476291 1_3:+20447686 None:intergenic
TTGGGTAGTGGCGGCAGAGT+CGG 0.481200 1_3:+20447779 None:intergenic
TAAGTTTGCACGCAGAAGTT+CGG 0.485105 1_3:+20446881 None:intergenic
AAAAGCAGTCCAGGTTCAGC+AGG 0.497375 1_3:-20447542 Msa0108800:CDS
CACTTAGTTGTGTGCAAGTG+TGG 0.500438 1_3:-20446186 Msa0108800:CDS
CTGTGGCAGCCTCCGGAACA+TGG 0.502526 1_3:+20447276 None:intergenic
GGTTCAGCAGGTTCTTGTAG+TGG 0.505056 1_3:-20447530 Msa0108800:CDS
TTGCAATATTTACATAACTT+GGG 0.506178 1_3:-20446765 Msa0108800:CDS
AGTATGTGGCGTTTATCTCC+CGG 0.506715 1_3:+20446951 None:intergenic
GTTCCGGAGGCTGCCACAGA+TGG 0.508408 1_3:-20447272 Msa0108800:CDS
ATCTTCTGATAGCTTCGATC+CGG 0.508560 1_3:+20447752 None:intergenic
ATAGAGAAGACAGAATTATG+AGG 0.508809 1_3:+20446720 None:intergenic
CACACAACTAAGTGTAGGCT+TGG 0.511853 1_3:+20446195 None:intergenic
GTATTTCAACAAACATGTAA+TGG 0.512226 1_3:+20447618 None:intergenic
CCATTGCTTTCAATCCCATT+CGG 0.516665 1_3:+20447332 None:intergenic
ACCTACCTTGCATTGACAAG+TGG 0.517649 1_3:-20446320 Msa0108800:CDS
ACCAGACACCGAAAATAGAT+TGG 0.519369 1_3:-20447672 Msa0108800:CDS
GGAGTTCTTCACTCAAATAT+CGG 0.520249 1_3:+20447297 None:intergenic
ATCTGTTTCAACAACTTCGA+TGG 0.530198 1_3:+20447358 None:intergenic
GCCATTTGTTGATCATGCCC+CGG 0.533576 1_3:+20445425 None:intergenic
TTGAAACAGATCTACCGAAT+GGG 0.535513 1_3:-20447346 Msa0108800:CDS
TAAAGGAAATTAAGCTGAGT+CGG 0.536864 1_3:-20447478 Msa0108800:CDS
GGTGGTGCAGGAAGTGGTGG+AGG 0.539230 1_3:+20447692 None:intergenic
TCGGTTCAGCTACCTTCAGT+AGG 0.540246 1_3:-20447076 Msa0108800:CDS
TTCTGATAGCTTCGATCCGG+AGG 0.545370 1_3:+20447755 None:intergenic
GATTGTGCTGAACACGGTCA+TGG 0.546919 1_3:-20447126 Msa0108800:CDS
GTGCATGGAAAGAATAGGAC+TGG 0.553009 1_3:-20447173 Msa0108800:CDS
GCCGCCACTACCCAAACCTC+CGG 0.562559 1_3:-20447771 Msa0108800:CDS
AACTTCAGAATTATGCGCAA+TGG 0.563755 1_3:+20447574 None:intergenic
GTATGTGGCGTTTATCTCCC+GGG 0.564712 1_3:+20446952 None:intergenic
TTCAGCAGGTTCTTGTAGTG+GGG 0.568017 1_3:-20447528 Msa0108800:CDS
GTACAAGTCTCCCACTCACT+AGG 0.571667 1_3:+20446610 None:intergenic
AGTCATAAAGACGCAGTATG+TGG 0.573921 1_3:+20446937 None:intergenic
TGCAGGAAGTGGTGGAGGCA+AGG 0.579538 1_3:+20447697 None:intergenic
GACAAGTGGCTCATCAAGCA+TGG 0.579677 1_3:-20446306 Msa0108800:CDS
CTCCCATTTGGAAATCCTGA+AGG 0.579740 1_3:+20446382 None:intergenic
GAATTGTGCATGGAAAGAAT+AGG 0.580039 1_3:-20447178 Msa0108800:CDS
TTCAGTAGGGATGCTCTCGA+TGG 0.583985 1_3:-20447062 Msa0108800:CDS
CGGTTCAGCTACCTTCAGTA+GGG 0.590898 1_3:-20447075 Msa0108800:CDS
TGCTGCAGCAGCTCACGCCG+GGG 0.593738 1_3:-20445442 Msa0108800:intron
GTTCAAAGTCAGATGGGTGC+AGG 0.598923 1_3:-20446555 Msa0108800:CDS
AAAAGCAAGCACTTAATGGA+TGG 0.599900 1_3:-20446149 Msa0108800:CDS
CAATGAATAAATGTTCCTGA+TGG 0.601057 1_3:+20446907 None:intergenic
GAATGCTGTTCAAAGTCAGA+TGG 0.601226 1_3:-20446562 Msa0108800:CDS
GGGATTGAAAGCAATGGAGT+AGG 0.601533 1_3:-20447326 Msa0108800:CDS
TTATTACTAGCCTAGTGAGT+GGG 0.602053 1_3:-20446620 Msa0108800:CDS
TGTGAATGTTTCGATAGTAG+TGG 0.604151 1_3:+20447818 None:intergenic
GGTGAAATTCATCACAACAT+CGG 0.604562 1_3:-20447651 Msa0108800:CDS
TCCGGAGGTTTGGGTAGTGG+CGG 0.605445 1_3:+20447770 None:intergenic
ATGAGCCACTTGTCAATGCA+AGG 0.605600 1_3:+20446315 None:intergenic
GTTGAAACAGATCTACCGAA+TGG 0.607989 1_3:-20447347 Msa0108800:CDS
CCGAATGGGATTGAAAGCAA+TGG 0.608264 1_3:-20447332 Msa0108800:CDS
TTTGACATTGGATGTGACAG+AGG 0.609823 1_3:-20446501 Msa0108800:CDS
TTTGAGCTAAGAATTGTGCA+TGG 0.611242 1_3:-20447188 Msa0108800:CDS
GACTGGATTTGAAGAAAACA+AGG 0.612197 1_3:-20447156 Msa0108800:CDS
TGGCTTCTTTCTCGGCACTG+AGG 0.612609 1_3:+20447594 None:intergenic
ATCGAGAGCATCCCTACTGA+AGG 0.612994 1_3:+20447064 None:intergenic
GCATAGTTCAGATTGCTACA+AGG 0.615746 1_3:-20447396 Msa0108800:CDS
TACTATGTGACAGATTATCT+CGG 0.618368 1_3:-20447095 Msa0108800:CDS
ATTATTATCCTCTCCATCTG+TGG 0.619270 1_3:+20447259 None:intergenic
TGAACACGGTCATGGCTGAA+AGG 0.620232 1_3:-20447118 Msa0108800:CDS
CTTGTCGATAAGCACGACCC+GGG 0.628203 1_3:-20446969 Msa0108800:CDS
ACTTGCACACAACTAAGTGT+AGG 0.640898 1_3:+20446190 None:intergenic
ACTTTGAACAGCATTCAACA+TGG 0.643300 1_3:+20446569 None:intergenic
GGAGGCTGCCACAGATGGAG+AGG 0.645603 1_3:-20447267 Msa0108800:CDS
AAGCTATCAGAAGATTCTCG+TGG 0.653064 1_3:-20447744 Msa0108800:CDS
ATTATTACTAGCCTAGTGAG+TGG 0.653310 1_3:-20446621 Msa0108800:CDS
TGAAGAACTCCATGTTCCGG+AGG 0.656619 1_3:-20447285 Msa0108800:CDS
AATGCTGTTCAAAGTCAGAT+GGG 0.656650 1_3:-20446561 Msa0108800:CDS
ACTTGTCGATAAGCACGACC+CGG 0.656700 1_3:-20446970 Msa0108800:CDS
GCTTCTTTCTCGGCACTGAG+GGG 0.663612 1_3:+20447596 None:intergenic
AAATTCAACCAAGAATATGG+TGG 0.668921 1_3:-20446846 Msa0108800:CDS
TTAAACGTATGATGATAATG+GGG 0.679275 1_3:+20446342 None:intergenic
AGACTTGTACGTGAAAGAGT+TGG 0.691935 1_3:-20446597 Msa0108800:CDS
GCCACTTGTCAATGCAAGGT+AGG 0.694066 1_3:+20446319 None:intergenic
AATGGATGGCAACAACACAA+AGG 0.695166 1_3:-20446135 Msa0108800:intron
AGTGCTGATTGTGCTGAACA+CGG 0.717577 1_3:-20447132 Msa0108800:CDS
AGAGTCGGAGTGAAAACACG+TGG 0.744559 1_3:+20447794 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTCAACAAACATGTAAT+GGG + chr1_3:20445669-20445688 None:intergenic 20.0%
!! GCTTAATTTCCTTTAAATTA+AGG + chr1_3:20445802-20445821 None:intergenic 20.0%
!! GAAGATTATTAAAAATGACA+AGG - chr1_3:20446252-20446271 Msa0108800:CDS 20.0%
!! ATTGCAATATTTACATAACT+TGG - chr1_3:20446519-20446538 Msa0108800:CDS 20.0%
!! TTGCAATATTTACATAACTT+GGG - chr1_3:20446520-20446539 Msa0108800:CDS 20.0%
!!! AAGATTAATGTTTTTTGCAA+TGG - chr1_3:20447048-20447067 Msa0108800:CDS 20.0%
!! TCTAGAAAATTACTAAGATT+TGG + chr1_3:20447492-20447511 None:intergenic 20.0%
!!! TTTTATTTTATTTCAACCCA+TGG - chr1_3:20447531-20447550 Msa0108800:CDS 20.0%
!!! TTTATTTTATTTCAACCCAT+GGG - chr1_3:20447532-20447551 Msa0108800:CDS 20.0%
!! TATTTCAACAAACATGTAAT+GGG + chr1_3:20445669-20445688 None:intergenic 20.0%
!! GCTTAATTTCCTTTAAATTA+AGG + chr1_3:20445802-20445821 None:intergenic 20.0%
!! GAAGATTATTAAAAATGACA+AGG - chr1_3:20446252-20446271 Msa0108800:CDS 20.0%
!! ATTGCAATATTTACATAACT+TGG - chr1_3:20446519-20446538 Msa0108800:CDS 20.0%
!! TTGCAATATTTACATAACTT+GGG - chr1_3:20446520-20446539 Msa0108800:CDS 20.0%
!!! AAGATTAATGTTTTTTGCAA+TGG - chr1_3:20447048-20447067 Msa0108800:CDS 20.0%
!! TCTAGAAAATTACTAAGATT+TGG + chr1_3:20447492-20447511 None:intergenic 20.0%
!!! TTTTATTTTATTTCAACCCA+TGG - chr1_3:20447531-20447550 Msa0108800:CDS 20.0%
!!! TTTATTTTATTTCAACCCAT+GGG - chr1_3:20447532-20447551 Msa0108800:CDS 20.0%
!! GAATTTCACCAATCTATTTT+CGG + chr1_3:20445624-20445643 None:intergenic 25.0%
! GTATTTCAACAAACATGTAA+TGG + chr1_3:20445670-20445689 None:intergenic 25.0%
! TTAAGGTAGCTAATGTTTAT+AGG + chr1_3:20445785-20445804 None:intergenic 25.0%
! CATTAGCTACCTTAATTTAA+AGG - chr1_3:20445790-20445809 Msa0108800:intron 25.0%
! CATAAATTCAACCAAGAATA+TGG - chr1_3:20446436-20446455 Msa0108800:CDS 25.0%
! TTGTATGTTCTATTGATCTT+TGG - chr1_3:20446596-20446615 Msa0108800:CDS 25.0%
! TTTCAACATATCTTTGACAT+TGG - chr1_3:20446772-20446791 Msa0108800:CDS 25.0%
!! TTAAACGTATGATGATAATG+GGG + chr1_3:20446946-20446965 None:intergenic 25.0%
! GTTAAACGTATGATGATAAT+GGG + chr1_3:20446947-20446966 None:intergenic 25.0%
!! TGTTTTCCAATCTCTTAATT+TGG + chr1_3:20447178-20447197 None:intergenic 25.0%
! ATGCTACTATATTTCTTCAA+TGG - chr1_3:20447262-20447281 Msa0108800:CDS 25.0%
! TGCTACTATATTTCTTCAAT+GGG - chr1_3:20447263-20447282 Msa0108800:CDS 25.0%
!!! AAACTTGTTCTTTTCTATCT+AGG - chr1_3:20447722-20447741 Msa0108800:CDS 25.0%
!! GAATTTCACCAATCTATTTT+CGG + chr1_3:20445624-20445643 None:intergenic 25.0%
! GTATTTCAACAAACATGTAA+TGG + chr1_3:20445670-20445689 None:intergenic 25.0%
! TTAAGGTAGCTAATGTTTAT+AGG + chr1_3:20445785-20445804 None:intergenic 25.0%
! CATTAGCTACCTTAATTTAA+AGG - chr1_3:20445790-20445809 Msa0108800:intron 25.0%
! CATAAATTCAACCAAGAATA+TGG - chr1_3:20446436-20446455 Msa0108800:CDS 25.0%
! TTGTATGTTCTATTGATCTT+TGG - chr1_3:20446596-20446615 Msa0108800:CDS 25.0%
! TTTCAACATATCTTTGACAT+TGG - chr1_3:20446772-20446791 Msa0108800:CDS 25.0%
!! TTAAACGTATGATGATAATG+GGG + chr1_3:20446946-20446965 None:intergenic 25.0%
! GTTAAACGTATGATGATAAT+GGG + chr1_3:20446947-20446966 None:intergenic 25.0%
!! TGTTTTCCAATCTCTTAATT+TGG + chr1_3:20447178-20447197 None:intergenic 25.0%
! ATGCTACTATATTTCTTCAA+TGG - chr1_3:20447262-20447281 Msa0108800:CDS 25.0%
! TGCTACTATATTTCTTCAAT+GGG - chr1_3:20447263-20447282 Msa0108800:CDS 25.0%
!!! AAACTTGTTCTTTTCTATCT+AGG - chr1_3:20447722-20447741 Msa0108800:CDS 25.0%
TAAAGGAAATTAAGCTGAGT+CGG - chr1_3:20445807-20445826 Msa0108800:intron 30.0%
! TCGGAATGATTTTCATATGA+AGG - chr1_3:20445826-20445845 Msa0108800:intron 30.0%
! CGGAATGATTTTCATATGAA+GGG - chr1_3:20445827-20445846 Msa0108800:intron 30.0%
!! CATCTTGACTGTATTTTAAG+AGG + chr1_3:20446063-20446082 None:intergenic 30.0%
TACTATGTGACAGATTATCT+CGG - chr1_3:20446190-20446209 Msa0108800:CDS 30.0%
TAAGAAGCTTGATTTCATCT+AGG + chr1_3:20446294-20446313 None:intergenic 30.0%
!! TTATGACTATTTCTACCATC+AGG - chr1_3:20446363-20446382 Msa0108800:CDS 30.0%
CAATGAATAAATGTTCCTGA+TGG + chr1_3:20446381-20446400 None:intergenic 30.0%
AAATTCAACCAAGAATATGG+TGG - chr1_3:20446439-20446458 Msa0108800:CDS 30.0%
ATAGAGAAGACAGAATTATG+AGG + chr1_3:20446568-20446587 None:intergenic 30.0%
!! CATTCGAATAATTCTGGAAT+AGG - chr1_3:20446619-20446638 Msa0108800:CDS 30.0%
GGTTAAACGTATGATGATAA+TGG + chr1_3:20446948-20446967 None:intergenic 30.0%
AAGGTTCCAAATTAAGAGAT+TGG - chr1_3:20447169-20447188 Msa0108800:CDS 30.0%
GTATTATTGTGAAAGACTCT+AGG - chr1_3:20447199-20447218 Msa0108800:CDS 30.0%
TTTATCAAAATGAGAACTCG+AGG - chr1_3:20447397-20447416 Msa0108800:CDS 30.0%
GAAAGAAATAACAAACCCAT+GGG + chr1_3:20447550-20447569 None:intergenic 30.0%
TGAAAGAAATAACAAACCCA+TGG + chr1_3:20447551-20447570 None:intergenic 30.0%
! AATCAAAAAGTGTACCTCTT+AGG + chr1_3:20447597-20447616 None:intergenic 30.0%
CGACAAACCTATCAAAATAA+GGG + chr1_3:20447668-20447687 None:intergenic 30.0%
TAAAGGAAATTAAGCTGAGT+CGG - chr1_3:20445807-20445826 Msa0108800:intron 30.0%
! TCGGAATGATTTTCATATGA+AGG - chr1_3:20445826-20445845 Msa0108800:intron 30.0%
! CGGAATGATTTTCATATGAA+GGG - chr1_3:20445827-20445846 Msa0108800:intron 30.0%
!! CATCTTGACTGTATTTTAAG+AGG + chr1_3:20446063-20446082 None:intergenic 30.0%
TACTATGTGACAGATTATCT+CGG - chr1_3:20446190-20446209 Msa0108800:CDS 30.0%
TAAGAAGCTTGATTTCATCT+AGG + chr1_3:20446294-20446313 None:intergenic 30.0%
!! TTATGACTATTTCTACCATC+AGG - chr1_3:20446363-20446382 Msa0108800:CDS 30.0%
CAATGAATAAATGTTCCTGA+TGG + chr1_3:20446381-20446400 None:intergenic 30.0%
AAATTCAACCAAGAATATGG+TGG - chr1_3:20446439-20446458 Msa0108800:CDS 30.0%
ATAGAGAAGACAGAATTATG+AGG + chr1_3:20446568-20446587 None:intergenic 30.0%
!! CATTCGAATAATTCTGGAAT+AGG - chr1_3:20446619-20446638 Msa0108800:CDS 30.0%
GGTTAAACGTATGATGATAA+TGG + chr1_3:20446948-20446967 None:intergenic 30.0%
AAGGTTCCAAATTAAGAGAT+TGG - chr1_3:20447169-20447188 Msa0108800:CDS 30.0%
GTATTATTGTGAAAGACTCT+AGG - chr1_3:20447199-20447218 Msa0108800:CDS 30.0%
TTTATCAAAATGAGAACTCG+AGG - chr1_3:20447397-20447416 Msa0108800:CDS 30.0%
GAAAGAAATAACAAACCCAT+GGG + chr1_3:20447550-20447569 None:intergenic 30.0%
TGAAAGAAATAACAAACCCA+TGG + chr1_3:20447551-20447570 None:intergenic 30.0%
! AATCAAAAAGTGTACCTCTT+AGG + chr1_3:20447597-20447616 None:intergenic 30.0%
CGACAAACCTATCAAAATAA+GGG + chr1_3:20447668-20447687 None:intergenic 30.0%
TGTGAATGTTTCGATAGTAG+TGG + chr1_3:20445470-20445489 None:intergenic 35.0%
GGTGAAATTCATCACAACAT+CGG - chr1_3:20445634-20445653 Msa0108800:intron 35.0%
AACTTCAGAATTATGCGCAA+TGG + chr1_3:20445714-20445733 None:intergenic 35.0%
ATCTGTTTCAACAACTTCGA+TGG + chr1_3:20445930-20445949 None:intergenic 35.0%
TTGAAACAGATCTACCGAAT+GGG - chr1_3:20445939-20445958 Msa0108800:intron 35.0%
GGAGTTCTTCACTCAAATAT+CGG + chr1_3:20445991-20446010 None:intergenic 35.0%
ATTATTATCCTCTCCATCTG+TGG + chr1_3:20446029-20446048 None:intergenic 35.0%
TTTGAGCTAAGAATTGTGCA+TGG - chr1_3:20446097-20446116 Msa0108800:intron 35.0%
GAATTGTGCATGGAAAGAAT+AGG - chr1_3:20446107-20446126 Msa0108800:intron 35.0%
GACTGGATTTGAAGAAAACA+AGG - chr1_3:20446129-20446148 Msa0108800:intron 35.0%
CTTTGGCATTCGAATAATTC+TGG - chr1_3:20446613-20446632 Msa0108800:CDS 35.0%
! ATTATTACTAGCCTAGTGAG+TGG - chr1_3:20446664-20446683 Msa0108800:CDS 35.0%
! TTATTACTAGCCTAGTGAGT+GGG - chr1_3:20446665-20446684 Msa0108800:CDS 35.0%
ACTTTGAACAGCATTCAACA+TGG + chr1_3:20446719-20446738 None:intergenic 35.0%
AATGCTGTTCAAAGTCAGAT+GGG - chr1_3:20446724-20446743 Msa0108800:CDS 35.0%
CACTTGTGATTGAGACTATT+GGG + chr1_3:20446837-20446856 None:intergenic 35.0%
TCACTTGTGATTGAGACTAT+TGG + chr1_3:20446838-20446857 None:intergenic 35.0%
!! GACAACAATTTTGATGCTTG+TGG - chr1_3:20446856-20446875 Msa0108800:CDS 35.0%
ACAGAAAAGCAAGCACTTAA+TGG - chr1_3:20447132-20447151 Msa0108800:CDS 35.0%
AAAAGCAAGCACTTAATGGA+TGG - chr1_3:20447136-20447155 Msa0108800:CDS 35.0%
TAGAACTTATGTAGCCTAAG+AGG - chr1_3:20447580-20447599 Msa0108800:CDS 35.0%
TCGAGAATTTCTCTCAATTC+TGG - chr1_3:20447629-20447648 Msa0108800:CDS 35.0%
AGAATTTCTCTCAATTCTGG+TGG - chr1_3:20447632-20447651 Msa0108800:CDS 35.0%
CCTATCAAAATAAGGGTTTC+CGG + chr1_3:20447661-20447680 None:intergenic 35.0%
GCGACAAACCTATCAAAATA+AGG + chr1_3:20447669-20447688 None:intergenic 35.0%
GCGACAAACTTGTGAAAATA+GGG + chr1_3:20447698-20447717 None:intergenic 35.0%
AGCGACAAACTTGTGAAAAT+AGG + chr1_3:20447699-20447718 None:intergenic 35.0%
GGGATGCAATACATAAAGTA+TGG - chr1_3:20447787-20447806 Msa0108800:CDS 35.0%
TGTGAATGTTTCGATAGTAG+TGG + chr1_3:20445470-20445489 None:intergenic 35.0%
GGTGAAATTCATCACAACAT+CGG - chr1_3:20445634-20445653 Msa0108800:intron 35.0%
AACTTCAGAATTATGCGCAA+TGG + chr1_3:20445714-20445733 None:intergenic 35.0%
ATCTGTTTCAACAACTTCGA+TGG + chr1_3:20445930-20445949 None:intergenic 35.0%
TTGAAACAGATCTACCGAAT+GGG - chr1_3:20445939-20445958 Msa0108800:intron 35.0%
GGAGTTCTTCACTCAAATAT+CGG + chr1_3:20445991-20446010 None:intergenic 35.0%
ATTATTATCCTCTCCATCTG+TGG + chr1_3:20446029-20446048 None:intergenic 35.0%
TTTGAGCTAAGAATTGTGCA+TGG - chr1_3:20446097-20446116 Msa0108800:intron 35.0%
GAATTGTGCATGGAAAGAAT+AGG - chr1_3:20446107-20446126 Msa0108800:intron 35.0%
GACTGGATTTGAAGAAAACA+AGG - chr1_3:20446129-20446148 Msa0108800:intron 35.0%
CTTTGGCATTCGAATAATTC+TGG - chr1_3:20446613-20446632 Msa0108800:CDS 35.0%
! ATTATTACTAGCCTAGTGAG+TGG - chr1_3:20446664-20446683 Msa0108800:CDS 35.0%
! TTATTACTAGCCTAGTGAGT+GGG - chr1_3:20446665-20446684 Msa0108800:CDS 35.0%
ACTTTGAACAGCATTCAACA+TGG + chr1_3:20446719-20446738 None:intergenic 35.0%
AATGCTGTTCAAAGTCAGAT+GGG - chr1_3:20446724-20446743 Msa0108800:CDS 35.0%
CACTTGTGATTGAGACTATT+GGG + chr1_3:20446837-20446856 None:intergenic 35.0%
TCACTTGTGATTGAGACTAT+TGG + chr1_3:20446838-20446857 None:intergenic 35.0%
!! GACAACAATTTTGATGCTTG+TGG - chr1_3:20446856-20446875 Msa0108800:CDS 35.0%
ACAGAAAAGCAAGCACTTAA+TGG - chr1_3:20447132-20447151 Msa0108800:CDS 35.0%
AAAAGCAAGCACTTAATGGA+TGG - chr1_3:20447136-20447155 Msa0108800:CDS 35.0%
TAGAACTTATGTAGCCTAAG+AGG - chr1_3:20447580-20447599 Msa0108800:CDS 35.0%
TCGAGAATTTCTCTCAATTC+TGG - chr1_3:20447629-20447648 Msa0108800:CDS 35.0%
AGAATTTCTCTCAATTCTGG+TGG - chr1_3:20447632-20447651 Msa0108800:CDS 35.0%
CCTATCAAAATAAGGGTTTC+CGG + chr1_3:20447661-20447680 None:intergenic 35.0%
GCGACAAACCTATCAAAATA+AGG + chr1_3:20447669-20447688 None:intergenic 35.0%
GCGACAAACTTGTGAAAATA+GGG + chr1_3:20447698-20447717 None:intergenic 35.0%
AGCGACAAACTTGTGAAAAT+AGG + chr1_3:20447699-20447718 None:intergenic 35.0%
GGGATGCAATACATAAAGTA+TGG - chr1_3:20447787-20447806 Msa0108800:CDS 35.0%
ATCTTCTGATAGCTTCGATC+CGG + chr1_3:20445536-20445555 None:intergenic 40.0%
AAGCTATCAGAAGATTCTCG+TGG - chr1_3:20445541-20445560 Msa0108800:intron 40.0%
!!! AATCTATTTTCGGTGTCTGG+TGG + chr1_3:20445614-20445633 None:intergenic 40.0%
ACCAGACACCGAAAATAGAT+TGG - chr1_3:20445613-20445632 Msa0108800:intron 40.0%
!!! ACCAATCTATTTTCGGTGTC+TGG + chr1_3:20445617-20445636 None:intergenic 40.0%
GCAATCTGAACTATGCTTCA+TGG + chr1_3:20445885-20445904 None:intergenic 40.0%
GCATAGTTCAGATTGCTACA+AGG - chr1_3:20445889-20445908 Msa0108800:intron 40.0%
GTTGAAACAGATCTACCGAA+TGG - chr1_3:20445938-20445957 Msa0108800:intron 40.0%
CCATTGCTTTCAATCCCATT+CGG + chr1_3:20445956-20445975 None:intergenic 40.0%
AGTCATAAAGACGCAGTATG+TGG + chr1_3:20446351-20446370 None:intergenic 40.0%
TAAGTTTGCACGCAGAAGTT+CGG + chr1_3:20446407-20446426 None:intergenic 40.0%
ATGCTTCACCACCATATTCT+TGG + chr1_3:20446450-20446469 None:intergenic 40.0%
CATTACTCGACAGTGTTTAG+AGG - chr1_3:20446495-20446514 Msa0108800:CDS 40.0%
AGACAGAATTATGAGGCTTC+AGG + chr1_3:20446561-20446580 None:intergenic 40.0%
AGACTTGTACGTGAAAGAGT+TGG - chr1_3:20446688-20446707 Msa0108800:CDS 40.0%
GAATGCTGTTCAAAGTCAGA+TGG - chr1_3:20446723-20446742 Msa0108800:CDS 40.0%
TTTGACATTGGATGTGACAG+AGG - chr1_3:20446784-20446803 Msa0108800:CDS 40.0%
TTCCTGTTCAATTTGCCTTC+AGG - chr1_3:20446888-20446907 Msa0108800:CDS 40.0%
ATCCTGAAGGCAAATTGAAC+AGG + chr1_3:20446893-20446912 None:intergenic 40.0%
TTGCCTTCAGGATTTCCAAA+TGG - chr1_3:20446900-20446919 Msa0108800:CDS 40.0%
TGCCTTCAGGATTTCCAAAT+GGG - chr1_3:20446901-20446920 Msa0108800:CDS 40.0%
TTCTAACAGTCTCTCCCATT+TGG + chr1_3:20446918-20446937 None:intergenic 40.0%
ACTTGCACACAACTAAGTGT+AGG + chr1_3:20447098-20447117 None:intergenic 40.0%
! TGTGCAAGTGTGGTTTTTGT+GGG - chr1_3:20447109-20447128 Msa0108800:CDS 40.0%
AATGGATGGCAACAACACAA+AGG - chr1_3:20447150-20447169 Msa0108800:CDS 40.0%
TTCACCATCCATTGTTCTAG+AGG + chr1_3:20447228-20447247 None:intergenic 40.0%
! TCTAGAACAATGGATGGTGA+AGG - chr1_3:20447227-20447246 Msa0108800:CDS 40.0%
ATCCTCGCATTTCACTCAAT+GGG - chr1_3:20447320-20447339 Msa0108800:CDS 40.0%
ATTGGAGGAGTAAACATGCA+TGG - chr1_3:20447367-20447386 Msa0108800:CDS 40.0%
TTGGAGGAGTAAACATGCAT+GGG - chr1_3:20447368-20447387 Msa0108800:CDS 40.0%
!!! CCGGAAACCCTTATTTTGAT+AGG - chr1_3:20447658-20447677 Msa0108800:CDS 40.0%
ATCTTCTGATAGCTTCGATC+CGG + chr1_3:20445536-20445555 None:intergenic 40.0%
AAGCTATCAGAAGATTCTCG+TGG - chr1_3:20445541-20445560 Msa0108800:intron 40.0%
!!! AATCTATTTTCGGTGTCTGG+TGG + chr1_3:20445614-20445633 None:intergenic 40.0%
ACCAGACACCGAAAATAGAT+TGG - chr1_3:20445613-20445632 Msa0108800:intron 40.0%
!!! ACCAATCTATTTTCGGTGTC+TGG + chr1_3:20445617-20445636 None:intergenic 40.0%
GCAATCTGAACTATGCTTCA+TGG + chr1_3:20445885-20445904 None:intergenic 40.0%
GCATAGTTCAGATTGCTACA+AGG - chr1_3:20445889-20445908 Msa0108800:intron 40.0%
GTTGAAACAGATCTACCGAA+TGG - chr1_3:20445938-20445957 Msa0108800:intron 40.0%
CCATTGCTTTCAATCCCATT+CGG + chr1_3:20445956-20445975 None:intergenic 40.0%
AGTCATAAAGACGCAGTATG+TGG + chr1_3:20446351-20446370 None:intergenic 40.0%
TAAGTTTGCACGCAGAAGTT+CGG + chr1_3:20446407-20446426 None:intergenic 40.0%
ATGCTTCACCACCATATTCT+TGG + chr1_3:20446450-20446469 None:intergenic 40.0%
CATTACTCGACAGTGTTTAG+AGG - chr1_3:20446495-20446514 Msa0108800:CDS 40.0%
AGACAGAATTATGAGGCTTC+AGG + chr1_3:20446561-20446580 None:intergenic 40.0%
AGACTTGTACGTGAAAGAGT+TGG - chr1_3:20446688-20446707 Msa0108800:CDS 40.0%
GAATGCTGTTCAAAGTCAGA+TGG - chr1_3:20446723-20446742 Msa0108800:CDS 40.0%
TTTGACATTGGATGTGACAG+AGG - chr1_3:20446784-20446803 Msa0108800:CDS 40.0%
TTCCTGTTCAATTTGCCTTC+AGG - chr1_3:20446888-20446907 Msa0108800:CDS 40.0%
ATCCTGAAGGCAAATTGAAC+AGG + chr1_3:20446893-20446912 None:intergenic 40.0%
TTGCCTTCAGGATTTCCAAA+TGG - chr1_3:20446900-20446919 Msa0108800:CDS 40.0%
TGCCTTCAGGATTTCCAAAT+GGG - chr1_3:20446901-20446920 Msa0108800:CDS 40.0%
TTCTAACAGTCTCTCCCATT+TGG + chr1_3:20446918-20446937 None:intergenic 40.0%
ACTTGCACACAACTAAGTGT+AGG + chr1_3:20447098-20447117 None:intergenic 40.0%
! TGTGCAAGTGTGGTTTTTGT+GGG - chr1_3:20447109-20447128 Msa0108800:CDS 40.0%
AATGGATGGCAACAACACAA+AGG - chr1_3:20447150-20447169 Msa0108800:CDS 40.0%
TTCACCATCCATTGTTCTAG+AGG + chr1_3:20447228-20447247 None:intergenic 40.0%
! TCTAGAACAATGGATGGTGA+AGG - chr1_3:20447227-20447246 Msa0108800:CDS 40.0%
ATCCTCGCATTTCACTCAAT+GGG - chr1_3:20447320-20447339 Msa0108800:CDS 40.0%
ATTGGAGGAGTAAACATGCA+TGG - chr1_3:20447367-20447386 Msa0108800:CDS 40.0%
TTGGAGGAGTAAACATGCAT+GGG - chr1_3:20447368-20447387 Msa0108800:CDS 40.0%
!!! CCGGAAACCCTTATTTTGAT+AGG - chr1_3:20447658-20447677 Msa0108800:CDS 40.0%
ATGCGCAATGGCTTCTTTCT+CGG + chr1_3:20445702-20445721 None:intergenic 45.0%
!! CCTGGACTGCTTTTGCAAAA+TGG + chr1_3:20445737-20445756 None:intergenic 45.0%
! CCATTTTGCAAAAGCAGTCC+AGG - chr1_3:20445734-20445753 Msa0108800:intron 45.0%
GTTCAGCAGGTTCTTGTAGT+GGG - chr1_3:20445756-20445775 Msa0108800:intron 45.0%
TTCAGCAGGTTCTTGTAGTG+GGG - chr1_3:20445757-20445776 Msa0108800:intron 45.0%
CCGAATGGGATTGAAAGCAA+TGG - chr1_3:20445953-20445972 Msa0108800:intron 45.0%
GGGATTGAAAGCAATGGAGT+AGG - chr1_3:20445959-20445978 Msa0108800:intron 45.0%
GAGTGAAGAACTCCATGTTC+CGG - chr1_3:20445997-20446016 Msa0108800:intron 45.0%
GTGCATGGAAAGAATAGGAC+TGG - chr1_3:20446112-20446131 Msa0108800:intron 45.0%
!! AGTGCTGATTGTGCTGAACA+CGG - chr1_3:20446153-20446172 Msa0108800:CDS 45.0%
AGTATGTGGCGTTTATCTCC+CGG + chr1_3:20446337-20446356 None:intergenic 45.0%
CTCCCATTTGGAAATCCTGA+AGG + chr1_3:20446906-20446925 None:intergenic 45.0%
! ACCTACCTTGCATTGACAAG+TGG - chr1_3:20446965-20446984 Msa0108800:CDS 45.0%
ATGAGCCACTTGTCAATGCA+AGG + chr1_3:20446973-20446992 None:intergenic 45.0%
GCTCACTGTCTCTGCATAAT+GGG + chr1_3:20447011-20447030 None:intergenic 45.0%
TGCTCACTGTCTCTGCATAA+TGG + chr1_3:20447012-20447031 None:intergenic 45.0%
CACACAACTAAGTGTAGGCT+TGG + chr1_3:20447093-20447112 None:intergenic 45.0%
CACTTAGTTGTGTGCAAGTG+TGG - chr1_3:20447099-20447118 Msa0108800:CDS 45.0%
! GTGTGCAAGTGTGGTTTTTG+TGG - chr1_3:20447108-20447127 Msa0108800:CDS 45.0%
!! CTAGGCTACCTCTAGAACAA+TGG - chr1_3:20447217-20447236 Msa0108800:CDS 45.0%
!! GCTACCTCTAGAACAATGGA+TGG - chr1_3:20447221-20447240 Msa0108800:CDS 45.0%
CATCCTCGCATTTCACTCAA+TGG - chr1_3:20447319-20447338 Msa0108800:CDS 45.0%
ATCCCATTGAGTGAAATGCG+AGG + chr1_3:20447325-20447344 None:intergenic 45.0%
CATTTCACTCAATGGGATCC+AGG - chr1_3:20447327-20447346 Msa0108800:CDS 45.0%
!! CTCTCAATTCTGGTGGATTC+CGG - chr1_3:20447639-20447658 Msa0108800:CDS 45.0%
CTTCCGTACTGCGTCAATAT+GGG - chr1_3:20447767-20447786 Msa0108800:CDS 45.0%
CATCCCATATTGACGCAGTA+CGG + chr1_3:20447773-20447792 None:intergenic 45.0%
ATGCGCAATGGCTTCTTTCT+CGG + chr1_3:20445702-20445721 None:intergenic 45.0%
!! CCTGGACTGCTTTTGCAAAA+TGG + chr1_3:20445737-20445756 None:intergenic 45.0%
! CCATTTTGCAAAAGCAGTCC+AGG - chr1_3:20445734-20445753 Msa0108800:intron 45.0%
GTTCAGCAGGTTCTTGTAGT+GGG - chr1_3:20445756-20445775 Msa0108800:intron 45.0%
TTCAGCAGGTTCTTGTAGTG+GGG - chr1_3:20445757-20445776 Msa0108800:intron 45.0%
CCGAATGGGATTGAAAGCAA+TGG - chr1_3:20445953-20445972 Msa0108800:intron 45.0%
GGGATTGAAAGCAATGGAGT+AGG - chr1_3:20445959-20445978 Msa0108800:intron 45.0%
GAGTGAAGAACTCCATGTTC+CGG - chr1_3:20445997-20446016 Msa0108800:intron 45.0%
GTGCATGGAAAGAATAGGAC+TGG - chr1_3:20446112-20446131 Msa0108800:intron 45.0%
!! AGTGCTGATTGTGCTGAACA+CGG - chr1_3:20446153-20446172 Msa0108800:CDS 45.0%
AGTATGTGGCGTTTATCTCC+CGG + chr1_3:20446337-20446356 None:intergenic 45.0%
CTCCCATTTGGAAATCCTGA+AGG + chr1_3:20446906-20446925 None:intergenic 45.0%
! ACCTACCTTGCATTGACAAG+TGG - chr1_3:20446965-20446984 Msa0108800:CDS 45.0%
ATGAGCCACTTGTCAATGCA+AGG + chr1_3:20446973-20446992 None:intergenic 45.0%
GCTCACTGTCTCTGCATAAT+GGG + chr1_3:20447011-20447030 None:intergenic 45.0%
TGCTCACTGTCTCTGCATAA+TGG + chr1_3:20447012-20447031 None:intergenic 45.0%
CACACAACTAAGTGTAGGCT+TGG + chr1_3:20447093-20447112 None:intergenic 45.0%
CACTTAGTTGTGTGCAAGTG+TGG - chr1_3:20447099-20447118 Msa0108800:CDS 45.0%
! GTGTGCAAGTGTGGTTTTTG+TGG - chr1_3:20447108-20447127 Msa0108800:CDS 45.0%
!! CTAGGCTACCTCTAGAACAA+TGG - chr1_3:20447217-20447236 Msa0108800:CDS 45.0%
!! GCTACCTCTAGAACAATGGA+TGG - chr1_3:20447221-20447240 Msa0108800:CDS 45.0%
CATCCTCGCATTTCACTCAA+TGG - chr1_3:20447319-20447338 Msa0108800:CDS 45.0%
ATCCCATTGAGTGAAATGCG+AGG + chr1_3:20447325-20447344 None:intergenic 45.0%
CATTTCACTCAATGGGATCC+AGG - chr1_3:20447327-20447346 Msa0108800:CDS 45.0%
!! CTCTCAATTCTGGTGGATTC+CGG - chr1_3:20447639-20447658 Msa0108800:CDS 45.0%
CTTCCGTACTGCGTCAATAT+GGG - chr1_3:20447767-20447786 Msa0108800:CDS 45.0%
CATCCCATATTGACGCAGTA+CGG + chr1_3:20447773-20447792 None:intergenic 45.0%
AGAGTCGGAGTGAAAACACG+TGG + chr1_3:20445494-20445513 None:intergenic 50.0%
TAGCTTCGATCCGGAGGTTT+GGG + chr1_3:20445527-20445546 None:intergenic 50.0%
ATAGCTTCGATCCGGAGGTT+TGG + chr1_3:20445528-20445547 None:intergenic 50.0%
TTCTGATAGCTTCGATCCGG+AGG + chr1_3:20445533-20445552 None:intergenic 50.0%
AAAAGCAGTCCAGGTTCAGC+AGG - chr1_3:20445743-20445762 Msa0108800:intron 50.0%
CTACAAGAACCTGCTGAACC+TGG + chr1_3:20445755-20445774 None:intergenic 50.0%
GGTTCAGCAGGTTCTTGTAG+TGG - chr1_3:20445755-20445774 Msa0108800:intron 50.0%
TGAAGAACTCCATGTTCCGG+AGG - chr1_3:20446000-20446019 Msa0108800:intron 50.0%
GATTGTGCTGAACACGGTCA+TGG - chr1_3:20446159-20446178 Msa0108800:CDS 50.0%
TGAACACGGTCATGGCTGAA+AGG - chr1_3:20446167-20446186 Msa0108800:CDS 50.0%
TCGGTTCAGCTACCTTCAGT+AGG - chr1_3:20446209-20446228 Msa0108800:CDS 50.0%
CGGTTCAGCTACCTTCAGTA+GGG - chr1_3:20446210-20446229 Msa0108800:CDS 50.0%
!! ATCGAGAGCATCCCTACTGA+AGG + chr1_3:20446224-20446243 None:intergenic 50.0%
TTCAGTAGGGATGCTCTCGA+TGG - chr1_3:20446223-20446242 Msa0108800:CDS 50.0%
ACTTGTCGATAAGCACGACC+CGG - chr1_3:20446315-20446334 Msa0108800:CDS 50.0%
GTATGTGGCGTTTATCTCCC+GGG + chr1_3:20446336-20446355 None:intergenic 50.0%
GTACAAGTCTCCCACTCACT+AGG + chr1_3:20446678-20446697 None:intergenic 50.0%
GTTCAAAGTCAGATGGGTGC+AGG - chr1_3:20446730-20446749 Msa0108800:CDS 50.0%
GGATGTGACAGAGGCTTACT+AGG - chr1_3:20446793-20446812 Msa0108800:CDS 50.0%
GCCACTTGTCAATGCAAGGT+AGG + chr1_3:20446969-20446988 None:intergenic 50.0%
GACAAGTGGCTCATCAAGCA+TGG - chr1_3:20446979-20446998 Msa0108800:CDS 50.0%
TTCACTCAATGGGATCCAGG+AGG - chr1_3:20447330-20447349 Msa0108800:CDS 50.0%
TCACTCAATGGGATCCAGGA+GGG - chr1_3:20447331-20447350 Msa0108800:CDS 50.0%
GAGGGTGGTCTCTTGTTCAT+TGG - chr1_3:20447349-20447368 Msa0108800:CDS 50.0%
GGTGGTCTCTTGTTCATTGG+AGG - chr1_3:20447352-20447371 Msa0108800:CDS 50.0%
AGAGGTGGAAGAGACTGATG+AGG - chr1_3:20447431-20447450 Msa0108800:CDS 50.0%
GAGGTGGAAGAGACTGATGA+GGG - chr1_3:20447432-20447451 Msa0108800:CDS 50.0%
TGACGCAGTACGGAAGCTTA+GGG + chr1_3:20447763-20447782 None:intergenic 50.0%
TTGACGCAGTACGGAAGCTT+AGG + chr1_3:20447764-20447783 None:intergenic 50.0%
GCTTCCGTACTGCGTCAATA+TGG - chr1_3:20447766-20447785 Msa0108800:CDS 50.0%
AGAGTCGGAGTGAAAACACG+TGG + chr1_3:20445494-20445513 None:intergenic 50.0%
TAGCTTCGATCCGGAGGTTT+GGG + chr1_3:20445527-20445546 None:intergenic 50.0%
ATAGCTTCGATCCGGAGGTT+TGG + chr1_3:20445528-20445547 None:intergenic 50.0%
TTCTGATAGCTTCGATCCGG+AGG + chr1_3:20445533-20445552 None:intergenic 50.0%
AAAAGCAGTCCAGGTTCAGC+AGG - chr1_3:20445743-20445762 Msa0108800:intron 50.0%
CTACAAGAACCTGCTGAACC+TGG + chr1_3:20445755-20445774 None:intergenic 50.0%
GGTTCAGCAGGTTCTTGTAG+TGG - chr1_3:20445755-20445774 Msa0108800:intron 50.0%
TGAAGAACTCCATGTTCCGG+AGG - chr1_3:20446000-20446019 Msa0108800:intron 50.0%
GATTGTGCTGAACACGGTCA+TGG - chr1_3:20446159-20446178 Msa0108800:CDS 50.0%
TGAACACGGTCATGGCTGAA+AGG - chr1_3:20446167-20446186 Msa0108800:CDS 50.0%
TCGGTTCAGCTACCTTCAGT+AGG - chr1_3:20446209-20446228 Msa0108800:CDS 50.0%
CGGTTCAGCTACCTTCAGTA+GGG - chr1_3:20446210-20446229 Msa0108800:CDS 50.0%
!! ATCGAGAGCATCCCTACTGA+AGG + chr1_3:20446224-20446243 None:intergenic 50.0%
TTCAGTAGGGATGCTCTCGA+TGG - chr1_3:20446223-20446242 Msa0108800:CDS 50.0%
ACTTGTCGATAAGCACGACC+CGG - chr1_3:20446315-20446334 Msa0108800:CDS 50.0%
GTATGTGGCGTTTATCTCCC+GGG + chr1_3:20446336-20446355 None:intergenic 50.0%
GTACAAGTCTCCCACTCACT+AGG + chr1_3:20446678-20446697 None:intergenic 50.0%
GTTCAAAGTCAGATGGGTGC+AGG - chr1_3:20446730-20446749 Msa0108800:CDS 50.0%
GGATGTGACAGAGGCTTACT+AGG - chr1_3:20446793-20446812 Msa0108800:CDS 50.0%
GCCACTTGTCAATGCAAGGT+AGG + chr1_3:20446969-20446988 None:intergenic 50.0%
GACAAGTGGCTCATCAAGCA+TGG - chr1_3:20446979-20446998 Msa0108800:CDS 50.0%
TTCACTCAATGGGATCCAGG+AGG - chr1_3:20447330-20447349 Msa0108800:CDS 50.0%
TCACTCAATGGGATCCAGGA+GGG - chr1_3:20447331-20447350 Msa0108800:CDS 50.0%
GAGGGTGGTCTCTTGTTCAT+TGG - chr1_3:20447349-20447368 Msa0108800:CDS 50.0%
GGTGGTCTCTTGTTCATTGG+AGG - chr1_3:20447352-20447371 Msa0108800:CDS 50.0%
AGAGGTGGAAGAGACTGATG+AGG - chr1_3:20447431-20447450 Msa0108800:CDS 50.0%
GAGGTGGAAGAGACTGATGA+GGG - chr1_3:20447432-20447451 Msa0108800:CDS 50.0%
TGACGCAGTACGGAAGCTTA+GGG + chr1_3:20447763-20447782 None:intergenic 50.0%
TTGACGCAGTACGGAAGCTT+AGG + chr1_3:20447764-20447783 None:intergenic 50.0%
GCTTCCGTACTGCGTCAATA+TGG - chr1_3:20447766-20447785 Msa0108800:CDS 50.0%
!!! TTTTCGGTGTCTGGTGGTGC+AGG + chr1_3:20445608-20445627 None:intergenic 55.0%
! GCTTCTTTCTCGGCACTGAG+GGG + chr1_3:20445692-20445711 None:intergenic 55.0%
! GGCTTCTTTCTCGGCACTGA+GGG + chr1_3:20445693-20445712 None:intergenic 55.0%
TGGCTTCTTTCTCGGCACTG+AGG + chr1_3:20445694-20445713 None:intergenic 55.0%
CTTGTCGATAAGCACGACCC+GGG - chr1_3:20446316-20446335 Msa0108800:CDS 55.0%
TGAACAAGAGACCACCCTCC+TGG + chr1_3:20447348-20447367 None:intergenic 55.0%
CTCGAGGTCGAGTTCTTCAG+AGG - chr1_3:20447413-20447432 Msa0108800:CDS 55.0%
GAGGTCGAGTTCTTCAGAGG+TGG - chr1_3:20447416-20447435 Msa0108800:CDS 55.0%
!!! TTTTCGGTGTCTGGTGGTGC+AGG + chr1_3:20445608-20445627 None:intergenic 55.0%
! GCTTCTTTCTCGGCACTGAG+GGG + chr1_3:20445692-20445711 None:intergenic 55.0%
! GGCTTCTTTCTCGGCACTGA+GGG + chr1_3:20445693-20445712 None:intergenic 55.0%
TGGCTTCTTTCTCGGCACTG+AGG + chr1_3:20445694-20445713 None:intergenic 55.0%
CTTGTCGATAAGCACGACCC+GGG - chr1_3:20446316-20446335 Msa0108800:CDS 55.0%
TGAACAAGAGACCACCCTCC+TGG + chr1_3:20447348-20447367 None:intergenic 55.0%
CTCGAGGTCGAGTTCTTCAG+AGG - chr1_3:20447413-20447432 Msa0108800:CDS 55.0%
GAGGTCGAGTTCTTCAGAGG+TGG - chr1_3:20447416-20447435 Msa0108800:CDS 55.0%
! TTGGGTAGTGGCGGCAGAGT+CGG + chr1_3:20445509-20445528 None:intergenic 60.0%
! TCCGGAGGTTTGGGTAGTGG+CGG + chr1_3:20445518-20445537 None:intergenic 60.0%
CGATCCGGAGGTTTGGGTAG+TGG + chr1_3:20445521-20445540 None:intergenic 60.0%
! TGCAGGAAGTGGTGGAGGCA+AGG + chr1_3:20445591-20445610 None:intergenic 60.0%
! TCTGGTGGTGCAGGAAGTGG+TGG + chr1_3:20445599-20445618 None:intergenic 60.0%
! GTGTCTGGTGGTGCAGGAAG+TGG + chr1_3:20445602-20445621 None:intergenic 60.0%
TCTCCATCTGTGGCAGCCTC+CGG + chr1_3:20446019-20446038 None:intergenic 60.0%
CTCAATGGGATCCAGGAGGG+TGG - chr1_3:20447334-20447353 Msa0108800:CDS 60.0%
! TTGGGTAGTGGCGGCAGAGT+CGG + chr1_3:20445509-20445528 None:intergenic 60.0%
! TCCGGAGGTTTGGGTAGTGG+CGG + chr1_3:20445518-20445537 None:intergenic 60.0%
CGATCCGGAGGTTTGGGTAG+TGG + chr1_3:20445521-20445540 None:intergenic 60.0%
! TGCAGGAAGTGGTGGAGGCA+AGG + chr1_3:20445591-20445610 None:intergenic 60.0%
! TCTGGTGGTGCAGGAAGTGG+TGG + chr1_3:20445599-20445618 None:intergenic 60.0%
! GTGTCTGGTGGTGCAGGAAG+TGG + chr1_3:20445602-20445621 None:intergenic 60.0%
TCTCCATCTGTGGCAGCCTC+CGG + chr1_3:20446019-20446038 None:intergenic 60.0%
CTCAATGGGATCCAGGAGGG+TGG - chr1_3:20447334-20447353 Msa0108800:CDS 60.0%
GCCGCCACTACCCAAACCTC+CGG - chr1_3:20445514-20445533 Msa0108800:intron 65.0%
GGTGGTGCAGGAAGTGGTGG+AGG + chr1_3:20445596-20445615 None:intergenic 65.0%
CTGTGGCAGCCTCCGGAACA+TGG + chr1_3:20446012-20446031 None:intergenic 65.0%
GTTCCGGAGGCTGCCACAGA+TGG - chr1_3:20446013-20446032 Msa0108800:intron 65.0%
GGAGGCTGCCACAGATGGAG+AGG - chr1_3:20446018-20446037 Msa0108800:intron 65.0%
GTTGCTGCAGCAGCTCACGC+CGG - chr1_3:20447841-20447860 Msa0108800:CDS 65.0%
TTGCTGCAGCAGCTCACGCC+GGG - chr1_3:20447842-20447861 Msa0108800:CDS 65.0%
GCCGCCACTACCCAAACCTC+CGG - chr1_3:20445514-20445533 Msa0108800:intron 65.0%
GGTGGTGCAGGAAGTGGTGG+AGG + chr1_3:20445596-20445615 None:intergenic 65.0%
CTGTGGCAGCCTCCGGAACA+TGG + chr1_3:20446012-20446031 None:intergenic 65.0%
GTTCCGGAGGCTGCCACAGA+TGG - chr1_3:20446013-20446032 Msa0108800:intron 65.0%
GGAGGCTGCCACAGATGGAG+AGG - chr1_3:20446018-20446037 Msa0108800:intron 65.0%
GTTGCTGCAGCAGCTCACGC+CGG - chr1_3:20447841-20447860 Msa0108800:CDS 65.0%
TTGCTGCAGCAGCTCACGCC+GGG - chr1_3:20447842-20447861 Msa0108800:CDS 65.0%
TGCTGCAGCAGCTCACGCCG+GGG - chr1_3:20447843-20447862 Msa0108800:CDS 70.0%
TGCTGCAGCAGCTCACGCCG+GGG - chr1_3:20447843-20447862 Msa0108800:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 20445437 20447870 20445437 ID=Msa0108800;Name=Msa0108800
chr1_3 mRNA 20445437 20447870 20445437 ID=Msa0108800-mRNA-1;Parent=Msa0108800;Name=Msa0108800-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0|0|0.5|1|1|2|0|584
chr1_3 exon 20446136 20447870 20446136 ID=Msa0108800-mRNA-1:exon:7420;Parent=Msa0108800-mRNA-1
chr1_3 exon 20445437 20445456 20445437 ID=Msa0108800-mRNA-1:exon:7419;Parent=Msa0108800-mRNA-1
chr1_3 CDS 20446136 20447870 20446136 ID=Msa0108800-mRNA-1:cds;Parent=Msa0108800-mRNA-1
chr1_3 CDS 20445437 20445456 20445437 ID=Msa0108800-mRNA-1:cds;Parent=Msa0108800-mRNA-1
Gene Sequence

>Msa0108800

ATGTTAAACACATCATCTTTGAATTGTAATCCACTACTATCGAAACATTCACATCCACGTGTTTTCACTCCGACTCTGCCGCCACTACCCAAACCTCCGGATCGAAGCTATCAGAAGATTCTCGTGGATTTTCAAGTGACACAAAATTTCACCTTGCCTCCACCACTTCCTGCACCACCAGACACCGAAAATAGATTGGTGAAATTCATCACAACATCGGTTTCTTGCGCCCATTACATGTTTGTTGAAATACCCCTCAGTGCCGAGAAAGAAGCCATTGCGCATAATTCTGAAGTTCCATTTTGCAAAAGCAGTCCAGGTTCAGCAGGTTCTTGTAGTGGGGATCCTATAAACATTAGCTACCTTAATTTAAAGGAAATTAAGCTGAGTCGGAATGATTTTCATATGAAGGGTATTAATTCTTTTGATTTTGTTCATGTGCTTACCATGAAGCATAGTTCAGATTGCTACAAGGATCTCTATGACTTAACCATCGAAGTTGTTGAAACAGATCTACCGAATGGGATTGAAAGCAATGGAGTAGGTGATGACCGATATTTGAGTGAAGAACTCCATGTTCCGGAGGCTGCCACAGATGGAGAGGATAATAATACTAATGACGACCTCTTAAAATACAGTCAAGATGATGAATATGAAGTATTTGAGCTAAGAATTGTGCATGGAAAGAATAGGACTGGATTTGAAGAAAACAAGGAAGTGCTGATTGTGCTGAACACGGTCATGGCTGAAAGGTACTATGTGACAGATTATCTCGGTTCAGCTACCTTCAGTAGGGATGCTCTCGATGGTTGTTTGAAGATTATTAAAAATGACAAGGATTTCTTTCATCAAAGCCTAGATGAAATCAAGCTTCTTAAACTTGTCGATAAGCACGACCCGGGAGATAAACGCCACATACTGCGTCTTTATGACTATTTCTACCATCAGGAACATTTATTCATTGTGACCGAACTTCTGCGTGCAAACTTATATGAATTTCATAAATTCAACCAAGAATATGGTGGTGAAGCATATTTTACATTAAAGAGATTGCAGCTCATTACTCGACAGTGTTTAGAGGCATTGCAATATTTACATAACTTGGGAATTATTCAATGTGACCTGAAGCCTCATAATTCTGTCTTCTCTATTGAAGTATTTGTATGTTCTATTGATCTTTGGCATTCGAATAATTCTGGAATAGGATGTATCTTATACTTGATTGATATTATTACTAGCCTAGTGAGTGGGAGACTTGTACGTGAAAGAGTTGGTGAAGCCATGTTGAATGCTGTTCAAAGTCAGATGGGTGCAGGTGAAATGAGATTTTATGAGTTTCAACATATCTTTGACATTGGATGTGACAGAGGCTTACTAGGAGCTTCAGTTGAAAAGATCCCAATAGTCTCAATCACAAGTGACAACAATTTTGATGCTTGTGGCGATATAATTTCCTGTTCAATTTGCCTTCAGGATTTCCAAATGGGAGAGACTGTTAGAAGCTTGCCCCATTATCATCATACGTTTAACCTACCTTGCATTGACAAGTGGCTCATCAAGCATGGCTTGTGCCCATTATGCAGAGACAGTGAGCAGCTAGTGCTTTCAAATAAGATTAATGTTTTTTGCAATGGCGTGAAAAGCATATATTTTCCAAGCCTACACTTAGTTGTGTGCAAGTGTGGTTTTTGTGGGACAGAAAAGCAAGCACTTAATGGATGGCAACAACACAAAGCAGCTCACGCCGGGGCATGA

Protein sequence

>Msa0108800

MLNTSSLNCNPLLSKHSHPRVFTPTLPPLPKPPDRSYQKILVDFQVTQNFTLPPPLPAPPDTENRLVKFITTSVSCAHYMFVEIPLSAEKEAIAHNSEVPFCKSSPGSAGSCSGDPINISYLNLKEIKLSRNDFHMKGINSFDFVHVLTMKHSSDCYKDLYDLTIEVVETDLPNGIESNGVGDDRYLSEELHVPEAATDGEDNNTNDDLLKYSQDDEYEVFELRIVHGKNRTGFEENKEVLIVLNTVMAERYYVTDYLGSATFSRDALDGCLKIIKNDKDFFHQSLDEIKLLKLVDKHDPGDKRHILRLYDYFYHQEHLFIVTELLRANLYEFHKFNQEYGGEAYFTLKRLQLITRQCLEALQYLHNLGIIQCDLKPHNSVFSIEVFVCSIDLWHSNNSGIGCILYLIDIITSLVSGRLVRERVGEAMLNAVQSQMGAGEMRFYEFQHIFDIGCDRGLLGASVEKIPIVSITSDNNFDACGDIISCSICLQDFQMGETVRSLPHYHHTFNLPCIDKWLIKHGLCPLCRDSEQLVLSNKINVFCNGVKSIYFPSLHLVVCKCGFCGTEKQALNGWQQHKAAHAGA*