Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110080 | sp|Q8L3W1|VRN1_ARATH | 25.872 | 344 | 202 | 13 | 12 | 314 | 6 | 337 | 2.85e-22 | 98.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110080 | A0A396IHE6 | 65.031 | 326 | 107 | 3 | 1 | 323 | 1 | 322 | 1.33e-147 | 427 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0110080 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110080 | MtrunA17_Chr4g0067431 | 65.031 | 326 | 107 | 3 | 1 | 323 | 1 | 322 | 2.56e-151 | 427 |
| Msa0110080 | MtrunA17_Chr1g0163221 | 58.642 | 324 | 110 | 7 | 1 | 323 | 1 | 301 | 1.47e-111 | 328 |
| Msa0110080 | MtrunA17_Chr6g0467351 | 64.407 | 236 | 71 | 3 | 1 | 233 | 1 | 226 | 1.33e-98 | 290 |
| Msa0110080 | MtrunA17_Chr1g0163061 | 56.981 | 265 | 69 | 2 | 1 | 220 | 1 | 265 | 2.51e-77 | 237 |
| Msa0110080 | MtrunA17_Chr1g0163071 | 29.412 | 306 | 192 | 8 | 28 | 321 | 2 | 295 | 1.97e-33 | 125 |
| Msa0110080 | MtrunA17_Chr3g0131891 | 32.051 | 312 | 177 | 12 | 10 | 312 | 17 | 302 | 1.00e-31 | 121 |
| Msa0110080 | MtrunA17_Chr1g0163131 | 30.159 | 315 | 190 | 15 | 8 | 311 | 14 | 309 | 1.77e-30 | 117 |
| Msa0110080 | MtrunA17_Chr3g0103181 | 28.990 | 307 | 177 | 10 | 10 | 312 | 10 | 279 | 4.47e-29 | 112 |
| Msa0110080 | MtrunA17_Chr1g0163251 | 28.525 | 305 | 178 | 10 | 12 | 311 | 9 | 278 | 6.29e-28 | 112 |
| Msa0110080 | MtrunA17_Chr1g0208771 | 27.243 | 301 | 191 | 10 | 27 | 317 | 12 | 294 | 1.60e-27 | 111 |
| Msa0110080 | MtrunA17_Chr8g0390841 | 27.187 | 320 | 208 | 10 | 10 | 321 | 37 | 339 | 2.48e-27 | 111 |
| Msa0110080 | MtrunA17_Chr1g0163181 | 29.932 | 294 | 187 | 11 | 21 | 311 | 14 | 291 | 2.93e-26 | 107 |
| Msa0110080 | MtrunA17_Chr3g0103151 | 38.562 | 153 | 85 | 5 | 10 | 158 | 10 | 157 | 1.12e-25 | 100 |
| Msa0110080 | MtrunA17_Chr1g0163261 | 28.197 | 305 | 190 | 9 | 8 | 311 | 5 | 281 | 1.44e-25 | 103 |
| Msa0110080 | MtrunA17_Chr7g0233561 | 27.393 | 303 | 186 | 8 | 10 | 298 | 16 | 298 | 4.35e-25 | 103 |
| Msa0110080 | MtrunA17_Chr6g0467361 | 52.326 | 86 | 41 | 0 | 233 | 318 | 7 | 92 | 5.53e-25 | 96.7 |
| Msa0110080 | MtrunA17_Chr7g0233571 | 44.860 | 107 | 58 | 1 | 10 | 116 | 8 | 113 | 3.73e-24 | 98.2 |
| Msa0110080 | MtrunA17_Chr7g0233541 | 26.263 | 297 | 188 | 9 | 28 | 312 | 2 | 279 | 2.07e-23 | 97.8 |
| Msa0110080 | MtrunA17_Chr1g0163201 | 27.451 | 306 | 177 | 9 | 27 | 319 | 18 | 291 | 2.66e-23 | 99.4 |
| Msa0110080 | MtrunA17_Chr7g0233521 | 29.470 | 302 | 155 | 12 | 28 | 312 | 2 | 262 | 2.84e-23 | 97.1 |
| Msa0110080 | MtrunA17_Chr1g0163231 | 27.044 | 318 | 184 | 10 | 1 | 311 | 1 | 277 | 6.43e-23 | 96.7 |
| Msa0110080 | MtrunA17_Chr1g0163101 | 34.118 | 170 | 89 | 6 | 9 | 168 | 14 | 170 | 5.49e-22 | 91.3 |
| Msa0110080 | MtrunA17_Chr4g0033961 | 25.320 | 391 | 203 | 11 | 12 | 317 | 6 | 392 | 1.51e-21 | 94.4 |
| Msa0110080 | MtrunA17_Chr3g0103171 | 27.740 | 292 | 174 | 9 | 27 | 312 | 5 | 265 | 1.60e-21 | 92.0 |
| Msa0110080 | MtrunA17_Chr1g0171611 | 26.667 | 315 | 177 | 9 | 1 | 311 | 1 | 265 | 1.85e-21 | 92.4 |
| Msa0110080 | MtrunA17_Chr5g0419201 | 32.979 | 188 | 105 | 6 | 1 | 174 | 1 | 181 | 1.04e-20 | 88.2 |
| Msa0110080 | MtrunA17_Chr7g0233531 | 25.914 | 301 | 167 | 9 | 28 | 312 | 2 | 262 | 6.89e-20 | 87.8 |
| Msa0110080 | MtrunA17_Chr1g0154161 | 26.910 | 301 | 175 | 10 | 10 | 298 | 28 | 295 | 9.17e-20 | 88.2 |
| Msa0110080 | MtrunA17_Chr3g0103191 | 26.872 | 227 | 138 | 5 | 10 | 235 | 10 | 209 | 3.36e-19 | 85.5 |
| Msa0110080 | MtrunA17_Chr6g0476181 | 33.951 | 162 | 87 | 6 | 28 | 182 | 2 | 150 | 2.44e-18 | 80.9 |
| Msa0110080 | MtrunA17_Chr1g0162161 | 37.500 | 144 | 77 | 7 | 28 | 166 | 4 | 139 | 3.68e-18 | 80.5 |
| Msa0110080 | MtrunA17_Chr1g0163191 | 38.168 | 131 | 66 | 5 | 1 | 127 | 2 | 121 | 1.03e-17 | 79.0 |
| Msa0110080 | MtrunA17_Chr1g0163081 | 36.364 | 121 | 66 | 4 | 28 | 141 | 6 | 122 | 1.39e-17 | 78.2 |
| Msa0110080 | MtrunA17_Chr1g0163121 | 34.109 | 129 | 74 | 5 | 26 | 147 | 9 | 133 | 1.16e-16 | 75.9 |
| Msa0110080 | MtrunA17_Chr3g0077411 | 24.383 | 324 | 179 | 11 | 1 | 314 | 251 | 518 | 4.00e-16 | 79.0 |
| Msa0110080 | MtrunA17_Chr3g0077411 | 31.034 | 145 | 94 | 3 | 11 | 153 | 24 | 164 | 1.28e-12 | 68.2 |
| Msa0110080 | MtrunA17_Chr1g0154191 | 24.390 | 328 | 204 | 10 | 10 | 298 | 20 | 342 | 5.94e-16 | 77.8 |
| Msa0110080 | MtrunA17_Chr5g0429931 | 25.773 | 291 | 152 | 10 | 27 | 312 | 10 | 241 | 2.82e-15 | 74.3 |
| Msa0110080 | MtrunA17_Chr1g0163241 | 34.722 | 144 | 75 | 6 | 15 | 146 | 14 | 150 | 1.86e-14 | 70.1 |
| Msa0110080 | MtrunA17_Chr1g0163141 | 30.814 | 172 | 101 | 6 | 26 | 183 | 9 | 176 | 3.65e-14 | 70.1 |
| Msa0110080 | MtrunA17_Chr3g0077461 | 31.646 | 158 | 99 | 3 | 11 | 160 | 236 | 392 | 3.80e-14 | 72.8 |
| Msa0110080 | MtrunA17_Chr1g0154151 | 25.510 | 294 | 184 | 10 | 28 | 298 | 20 | 301 | 4.51e-14 | 72.0 |
| Msa0110080 | MtrunA17_Chr1g0154131 | 26.471 | 306 | 168 | 12 | 23 | 305 | 193 | 464 | 4.57e-14 | 72.8 |
| Msa0110080 | MtrunA17_Chr1g0154171 | 25.000 | 340 | 209 | 12 | 13 | 319 | 23 | 349 | 6.61e-13 | 68.6 |
| Msa0110080 | MtrunA17_Chr3g0077451 | 22.759 | 290 | 155 | 8 | 26 | 312 | 10 | 233 | 7.21e-13 | 67.4 |
| Msa0110080 | MtrunA17_Chr1g0162441 | 32.353 | 102 | 68 | 1 | 12 | 113 | 7 | 107 | 5.75e-11 | 63.2 |
| Msa0110080 | MtrunA17_Chr1g0154071 | 24.217 | 351 | 216 | 14 | 10 | 321 | 155 | 494 | 8.82e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110080 | AT3G18990.1 | 25.872 | 344 | 202 | 13 | 12 | 314 | 6 | 337 | 2.89e-23 | 98.6 |
| Msa0110080 | AT3G18990.2 | 25.872 | 344 | 202 | 13 | 12 | 314 | 6 | 337 | 4.20e-23 | 98.6 |
| Msa0110080 | AT1G49475.1 | 37.903 | 124 | 74 | 3 | 5 | 127 | 26 | 147 | 7.29e-16 | 75.1 |
| Msa0110080 | AT3G18960.2 | 32.143 | 112 | 74 | 2 | 2 | 112 | 19 | 129 | 2.26e-15 | 73.9 |
| Msa0110080 | AT3G18960.1 | 32.143 | 112 | 74 | 2 | 2 | 112 | 19 | 129 | 2.34e-15 | 74.3 |
| Msa0110080 | AT4G01580.1 | 31.250 | 112 | 75 | 2 | 2 | 112 | 19 | 129 | 6.37e-15 | 72.4 |
| Msa0110080 | AT4G33280.1 | 26.426 | 333 | 186 | 13 | 10 | 316 | 23 | 322 | 5.04e-13 | 69.3 |
Find 39 sgRNAs with CRISPR-Local
Find 322 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTAAACAATTCAGAATAAA+TGG | 0.142583 | 1_3:-22552169 | Msa0110080:CDS |
| TTGATGACAAAGATAGAAAA+TGG | 0.181722 | 1_3:-22552216 | Msa0110080:CDS |
| CATGCGAAGCAATCTTTATC+AGG | 0.243715 | 1_3:+22553370 | None:intergenic |
| GCTGACCATAATGTTAAATT+TGG | 0.262407 | 1_3:-22552127 | Msa0110080:CDS |
| TTACTGAAAAGAAAGTTTAT+TGG | 0.274412 | 1_3:-22553955 | Msa0110080:CDS |
| TGCCTCGTAGCAAAATTATT+TGG | 0.278239 | 1_3:+22552274 | None:intergenic |
| TCTGAGTGATTCACAACTTT+TGG | 0.293072 | 1_3:-22553867 | Msa0110080:CDS |
| GAAGACGGTGATGAAGATTT+TGG | 0.298750 | 1_3:+22553677 | None:intergenic |
| TACTGAAAAGAAAGTTTATT+GGG | 0.299312 | 1_3:-22553954 | Msa0110080:CDS |
| TTATCTCTAATCCACATTTA+CGG | 0.314447 | 1_3:+22553801 | None:intergenic |
| TTAGGAAGTCGTAGAGTAAC+TGG | 0.331524 | 1_3:+22553980 | None:intergenic |
| CATCACCAAATTTAACATTA+TGG | 0.341952 | 1_3:+22552122 | None:intergenic |
| AAACTAGTGATTATGATGTT+TGG | 0.387209 | 1_3:-22553928 | Msa0110080:CDS |
| TACCCTTCAAGAAGGAAAAC+TGG | 0.397147 | 1_3:-22554249 | Msa0110080:intron |
| TGTCTTCTCACAAAACTTGC+GGG | 0.410110 | 1_3:+22554022 | None:intergenic |
| CTAAACAATTCAGAATAAAT+GGG | 0.412198 | 1_3:-22552168 | Msa0110080:CDS |
| TTTATTCTGAATTGTTTAGT+TGG | 0.418278 | 1_3:+22552172 | None:intergenic |
| TCTTCACTAATTTCTCTTGA+AGG | 0.423792 | 1_3:+22553773 | None:intergenic |
| TGATGACAAAGATAGAAAAT+GGG | 0.439585 | 1_3:-22552215 | Msa0110080:CDS |
| ATACATGGAAAATGATCTCT+TGG | 0.468132 | 1_3:-22553332 | Msa0110080:intron |
| TATGAAATGTTGCATGTGCT+TGG | 0.471551 | 1_3:+22553585 | None:intergenic |
| CTTCACTAATTTCTCTTGAA+GGG | 0.483268 | 1_3:+22553774 | None:intergenic |
| TATGATGCAAAAGGCATACA+TGG | 0.492834 | 1_3:-22553347 | Msa0110080:CDS |
| CTTCGCATGTATGATGCAAA+AGG | 0.497440 | 1_3:-22553356 | Msa0110080:CDS |
| CTTGAAAGTACCCTTCAAGA+AGG | 0.526405 | 1_3:-22554257 | Msa0110080:CDS |
| TCTTCTCATGAACCTGATCA+TGG | 0.532265 | 1_3:-22554302 | Msa0110080:CDS |
| ATGTCTTCTCACAAAACTTG+CGG | 0.538262 | 1_3:+22554021 | None:intergenic |
| TAGTTCTCTTATAGTTGTTG+AGG | 0.538518 | 1_3:-22553726 | Msa0110080:CDS |
| TTGCTACGAGGCATCTGCAA+AGG | 0.565526 | 1_3:-22552264 | Msa0110080:CDS |
| AGGCATCTGCAAAGGATGGA+AGG | 0.586157 | 1_3:-22552256 | Msa0110080:CDS |
| TAAACAATTCAGAATAAATG+GGG | 0.597019 | 1_3:-22552167 | Msa0110080:CDS |
| ATTTAACATTATGGTCAGCA+CGG | 0.603137 | 1_3:+22552131 | None:intergenic |
| ATGCGAAGCAATCTTTATCA+GGG | 0.607508 | 1_3:+22553371 | None:intergenic |
| TTTGTGAGAAGACATTGGCA+AGG | 0.610981 | 1_3:-22554013 | Msa0110080:CDS |
| TACGAGGCATCTGCAAAGGA+TGG | 0.619258 | 1_3:-22552260 | Msa0110080:CDS |
| TAGGAAGTCGTAGAGTAACT+GGG | 0.629187 | 1_3:+22553981 | None:intergenic |
| GTGATTGTACTCCGTAAATG+TGG | 0.632873 | 1_3:-22553812 | Msa0110080:CDS |
| GAGGATCCTTCATCTTCGCG+AGG | 0.649374 | 1_3:-22553707 | Msa0110080:CDS |
| AAACAATTCAGAATAAATGG+GGG | 0.702685 | 1_3:-22552166 | Msa0110080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTAATCTTATTTATGT+TGG | - | chr1_3:22553603-22553622 | Msa0110080:CDS | 10.0% |
| !! | AATAAAAAAAATATTCACTA+CGG | - | chr1_3:22553685-22553704 | Msa0110080:CDS | 10.0% |
| !!! | AATTTTAATCTTATTTATGT+TGG | - | chr1_3:22553603-22553622 | Msa0110080:CDS | 10.0% |
| !! | AATAAAAAAAATATTCACTA+CGG | - | chr1_3:22553685-22553704 | Msa0110080:CDS | 10.0% |
| !!! | GCTAATTAATACTTTTTTTT+TGG | - | chr1_3:22552855-22552874 | Msa0110080:intron | 15.0% |
| !!! | TAACATATACTACTTTTTTT+TGG | - | chr1_3:22553023-22553042 | Msa0110080:intron | 15.0% |
| !! | TAATTTATGGTATAATTCAA+TGG | + | chr1_3:22553089-22553108 | None:intergenic | 15.0% |
| !! | AAAGAAATATTATTACAAAG+TGG | + | chr1_3:22553115-22553134 | None:intergenic | 15.0% |
| !! | ATAAAAAAAATATTCACTAC+GGG | - | chr1_3:22553686-22553705 | Msa0110080:CDS | 15.0% |
| !!! | GCTAATTAATACTTTTTTTT+TGG | - | chr1_3:22552855-22552874 | Msa0110080:intron | 15.0% |
| !!! | TAACATATACTACTTTTTTT+TGG | - | chr1_3:22553023-22553042 | Msa0110080:intron | 15.0% |
| !! | TAATTTATGGTATAATTCAA+TGG | + | chr1_3:22553089-22553108 | None:intergenic | 15.0% |
| !! | AAAGAAATATTATTACAAAG+TGG | + | chr1_3:22553115-22553134 | None:intergenic | 15.0% |
| !! | ATAAAAAAAATATTCACTAC+GGG | - | chr1_3:22553686-22553705 | Msa0110080:CDS | 15.0% |
| !!! | ACTTTCTTTTCAGTAATATT+AGG | + | chr1_3:22552373-22552392 | None:intergenic | 20.0% |
| !! | TTACTGAAAAGAAAGTTTAT+TGG | - | chr1_3:22552377-22552396 | Msa0110080:intron | 20.0% |
| !! | TACTGAAAAGAAAGTTTATT+GGG | - | chr1_3:22552378-22552397 | Msa0110080:intron | 20.0% |
| !!! | TTCTTATAAACTTTTGAAGA+CGG | + | chr1_3:22552673-22552692 | None:intergenic | 20.0% |
| !!! | TGCAACATTTCATAATTTTA+AGG | - | chr1_3:22552756-22552775 | Msa0110080:intron | 20.0% |
| !!! | AATTTTAAGGATATTCACAA+AGG | - | chr1_3:22552769-22552788 | Msa0110080:intron | 20.0% |
| !!! | TTTTTTTGGTGAAAATATTC+AGG | - | chr1_3:22552869-22552888 | Msa0110080:intron | 20.0% |
| !!! | CTGTATCTATGTTTTAAAAT+CGG | + | chr1_3:22553267-22553286 | None:intergenic | 20.0% |
| !! | TTATGGTATGAAAAATCAAA+TGG | + | chr1_3:22553523-22553542 | None:intergenic | 20.0% |
| !! | AAAATTAAGTGATATGTGTT+GGG | + | chr1_3:22553589-22553608 | None:intergenic | 20.0% |
| !! | TAAAATTAAGTGATATGTGT+TGG | + | chr1_3:22553590-22553609 | None:intergenic | 20.0% |
| !!! | TCCATTTAGTCATTTTATTT+TGG | - | chr1_3:22553975-22553994 | Msa0110080:CDS | 20.0% |
| !! | ACCAAAATAAAATGACTAAA+TGG | + | chr1_3:22553979-22553998 | None:intergenic | 20.0% |
| !!! | TAGTCATTTTATTTTGGTTT+TGG | - | chr1_3:22553981-22554000 | Msa0110080:CDS | 20.0% |
| !! | TTTATTCTGAATTGTTTAGT+TGG | + | chr1_3:22554163-22554182 | None:intergenic | 20.0% |
| !! | ACTAAACAATTCAGAATAAA+TGG | - | chr1_3:22554163-22554182 | Msa0110080:intron | 20.0% |
| !! | CTAAACAATTCAGAATAAAT+GGG | - | chr1_3:22554164-22554183 | Msa0110080:intron | 20.0% |
| !! | TAAACAATTCAGAATAAATG+GGG | - | chr1_3:22554165-22554184 | Msa0110080:intron | 20.0% |
| !!! | ACTTTCTTTTCAGTAATATT+AGG | + | chr1_3:22552373-22552392 | None:intergenic | 20.0% |
| !! | TTACTGAAAAGAAAGTTTAT+TGG | - | chr1_3:22552377-22552396 | Msa0110080:intron | 20.0% |
| !! | TACTGAAAAGAAAGTTTATT+GGG | - | chr1_3:22552378-22552397 | Msa0110080:intron | 20.0% |
| !!! | TTCTTATAAACTTTTGAAGA+CGG | + | chr1_3:22552673-22552692 | None:intergenic | 20.0% |
| !!! | TGCAACATTTCATAATTTTA+AGG | - | chr1_3:22552756-22552775 | Msa0110080:intron | 20.0% |
| !!! | AATTTTAAGGATATTCACAA+AGG | - | chr1_3:22552769-22552788 | Msa0110080:intron | 20.0% |
| !!! | TTTTTTTGGTGAAAATATTC+AGG | - | chr1_3:22552869-22552888 | Msa0110080:intron | 20.0% |
| !!! | CTGTATCTATGTTTTAAAAT+CGG | + | chr1_3:22553267-22553286 | None:intergenic | 20.0% |
| !! | TTATGGTATGAAAAATCAAA+TGG | + | chr1_3:22553523-22553542 | None:intergenic | 20.0% |
| !! | AAAATTAAGTGATATGTGTT+GGG | + | chr1_3:22553589-22553608 | None:intergenic | 20.0% |
| !! | TAAAATTAAGTGATATGTGT+TGG | + | chr1_3:22553590-22553609 | None:intergenic | 20.0% |
| !!! | TCCATTTAGTCATTTTATTT+TGG | - | chr1_3:22553975-22553994 | Msa0110080:CDS | 20.0% |
| !! | ACCAAAATAAAATGACTAAA+TGG | + | chr1_3:22553979-22553998 | None:intergenic | 20.0% |
| !!! | TAGTCATTTTATTTTGGTTT+TGG | - | chr1_3:22553981-22554000 | Msa0110080:CDS | 20.0% |
| !! | TTTATTCTGAATTGTTTAGT+TGG | + | chr1_3:22554163-22554182 | None:intergenic | 20.0% |
| !! | ACTAAACAATTCAGAATAAA+TGG | - | chr1_3:22554163-22554182 | Msa0110080:intron | 20.0% |
| !! | CTAAACAATTCAGAATAAAT+GGG | - | chr1_3:22554164-22554183 | Msa0110080:intron | 20.0% |
| !! | TAAACAATTCAGAATAAATG+GGG | - | chr1_3:22554165-22554184 | Msa0110080:intron | 20.0% |
| ! | CAAGAATAATCTTGAAAAAG+TGG | + | chr1_3:22552059-22552078 | None:intergenic | 25.0% |
| ! | TAATCGTTCATAGTTTATGT+CGG | - | chr1_3:22552216-22552235 | Msa0110080:CDS | 25.0% |
| ! | AAACTAGTGATTATGATGTT+TGG | - | chr1_3:22552404-22552423 | Msa0110080:intron | 25.0% |
| ! | TTATCTCTAATCCACATTTA+CGG | + | chr1_3:22552534-22552553 | None:intergenic | 25.0% |
| !! | TAGATTCTTTATGCTCTTTT+AGG | + | chr1_3:22552708-22552727 | None:intergenic | 25.0% |
| !! | TCTAAATTTTCTCTTATTCC+TGG | - | chr1_3:22552828-22552847 | Msa0110080:intron | 25.0% |
| !!! | CTACTTTTTTTTGGTGAATA+TGG | - | chr1_3:22553032-22553051 | Msa0110080:intron | 25.0% |
| ! | TACAAAGTGGCATTAATTTA+TGG | + | chr1_3:22553102-22553121 | None:intergenic | 25.0% |
| !!! | CGATTTTAAAACATAGATAC+AGG | - | chr1_3:22553265-22553284 | Msa0110080:intron | 25.0% |
| ! | AACATGTATGACTTAAGTTA+TGG | + | chr1_3:22553540-22553559 | None:intergenic | 25.0% |
| ! | ACTATGAAATTACTTCTCTA+TGG | - | chr1_3:22553643-22553662 | Msa0110080:CDS | 25.0% |
| ! | CTATGAAATTACTTCTCTAT+GGG | - | chr1_3:22553644-22553663 | Msa0110080:CDS | 25.0% |
| ! | TGAGAATTGAGGATAAAAAT+AGG | - | chr1_3:22553805-22553824 | Msa0110080:CDS | 25.0% |
| ! | GAGAATTGAGGATAAAAATA+GGG | - | chr1_3:22553806-22553825 | Msa0110080:CDS | 25.0% |
| ! | CTTTCAATCATATGAATGAA+TGG | + | chr1_3:22553943-22553962 | None:intergenic | 25.0% |
| !! | TTGATGACAAAGATAGAAAA+TGG | - | chr1_3:22554116-22554135 | Msa0110080:intron | 25.0% |
| ! | TGATGACAAAGATAGAAAAT+GGG | - | chr1_3:22554117-22554136 | Msa0110080:intron | 25.0% |
| ! | AAACAATTCAGAATAAATGG+GGG | - | chr1_3:22554166-22554185 | Msa0110080:intron | 25.0% |
| ! | CATCACCAAATTTAACATTA+TGG | + | chr1_3:22554213-22554232 | None:intergenic | 25.0% |
| !! | TACTATTTTCTCCATAGAAA+AGG | - | chr1_3:22554282-22554301 | Msa0110080:CDS | 25.0% |
| ! | CAAGAATAATCTTGAAAAAG+TGG | + | chr1_3:22552059-22552078 | None:intergenic | 25.0% |
| ! | TAATCGTTCATAGTTTATGT+CGG | - | chr1_3:22552216-22552235 | Msa0110080:CDS | 25.0% |
| ! | AAACTAGTGATTATGATGTT+TGG | - | chr1_3:22552404-22552423 | Msa0110080:intron | 25.0% |
| ! | TTATCTCTAATCCACATTTA+CGG | + | chr1_3:22552534-22552553 | None:intergenic | 25.0% |
| !! | TAGATTCTTTATGCTCTTTT+AGG | + | chr1_3:22552708-22552727 | None:intergenic | 25.0% |
| !! | TCTAAATTTTCTCTTATTCC+TGG | - | chr1_3:22552828-22552847 | Msa0110080:intron | 25.0% |
| !!! | CTACTTTTTTTTGGTGAATA+TGG | - | chr1_3:22553032-22553051 | Msa0110080:intron | 25.0% |
| ! | TACAAAGTGGCATTAATTTA+TGG | + | chr1_3:22553102-22553121 | None:intergenic | 25.0% |
| !!! | CGATTTTAAAACATAGATAC+AGG | - | chr1_3:22553265-22553284 | Msa0110080:intron | 25.0% |
| ! | AACATGTATGACTTAAGTTA+TGG | + | chr1_3:22553540-22553559 | None:intergenic | 25.0% |
| ! | ACTATGAAATTACTTCTCTA+TGG | - | chr1_3:22553643-22553662 | Msa0110080:CDS | 25.0% |
| ! | CTATGAAATTACTTCTCTAT+GGG | - | chr1_3:22553644-22553663 | Msa0110080:CDS | 25.0% |
| ! | TGAGAATTGAGGATAAAAAT+AGG | - | chr1_3:22553805-22553824 | Msa0110080:CDS | 25.0% |
| ! | GAGAATTGAGGATAAAAATA+GGG | - | chr1_3:22553806-22553825 | Msa0110080:CDS | 25.0% |
| ! | CTTTCAATCATATGAATGAA+TGG | + | chr1_3:22553943-22553962 | None:intergenic | 25.0% |
| !! | TTGATGACAAAGATAGAAAA+TGG | - | chr1_3:22554116-22554135 | Msa0110080:intron | 25.0% |
| ! | TGATGACAAAGATAGAAAAT+GGG | - | chr1_3:22554117-22554136 | Msa0110080:intron | 25.0% |
| ! | AAACAATTCAGAATAAATGG+GGG | - | chr1_3:22554166-22554185 | Msa0110080:intron | 25.0% |
| ! | CATCACCAAATTTAACATTA+TGG | + | chr1_3:22554213-22554232 | None:intergenic | 25.0% |
| !! | TACTATTTTCTCCATAGAAA+AGG | - | chr1_3:22554282-22554301 | Msa0110080:CDS | 25.0% |
| !!! | TATGATGTTTGGTTTTGCAA+TGG | - | chr1_3:22552415-22552434 | Msa0110080:intron | 30.0% |
| CTTCACTAATTTCTCTTGAA+GGG | + | chr1_3:22552561-22552580 | None:intergenic | 30.0% | |
| TCTTCACTAATTTCTCTTGA+AGG | + | chr1_3:22552562-22552581 | None:intergenic | 30.0% | |
| TAGTTCTCTTATAGTTGTTG+AGG | - | chr1_3:22552606-22552625 | Msa0110080:intron | 30.0% | |
| TTAAGGATATTCACAAAGGT+TGG | - | chr1_3:22552773-22552792 | Msa0110080:intron | 30.0% | |
| AAGTATTAATTAGCAACACC+AGG | + | chr1_3:22552849-22552868 | None:intergenic | 30.0% | |
| ATACATGGAAAATGATCTCT+TGG | - | chr1_3:22553000-22553019 | Msa0110080:intron | 30.0% | |
| ! | TGTGCATTGATATCTACATT+AGG | - | chr1_3:22553142-22553161 | Msa0110080:intron | 30.0% |
| ATAGATACAGGACCAATAAT+AGG | - | chr1_3:22553277-22553296 | Msa0110080:intron | 30.0% | |
| AGGTACCTATATCCTATTAT+TGG | + | chr1_3:22553292-22553311 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTTCCAGCTCCAA+GGG | + | chr1_3:22553443-22553462 | None:intergenic | 30.0% |
| TCAAATGGTGTATATTTGCA+GGG | + | chr1_3:22553508-22553527 | None:intergenic | 30.0% | |
| ATCAAATGGTGTATATTTGC+AGG | + | chr1_3:22553509-22553528 | None:intergenic | 30.0% | |
| GAGAAGTAATTTCATAGTCA+AGG | + | chr1_3:22553641-22553660 | None:intergenic | 30.0% | |
| AAAAATATTCACTACGGGTA+TGG | - | chr1_3:22553691-22553710 | Msa0110080:CDS | 30.0% | |
| AAAATATTCACTACGGGTAT+GGG | - | chr1_3:22553692-22553711 | Msa0110080:CDS | 30.0% | |
| GAGTAAGTATATGAGAATTG+AGG | - | chr1_3:22553794-22553813 | Msa0110080:CDS | 30.0% | |
| ATTGAGGATAAAAATAGGGA+AGG | - | chr1_3:22553810-22553829 | Msa0110080:CDS | 30.0% | |
| GAAAACACATAATCCAAAAC+AGG | - | chr1_3:22554030-22554049 | Msa0110080:CDS | 30.0% | |
| ! | TTATTTGGTATGACCTGTTT+TGG | + | chr1_3:22554046-22554065 | None:intergenic | 30.0% |
| ! | TACCAAATAATTTTGCTACG+AGG | - | chr1_3:22554056-22554075 | Msa0110080:intron | 30.0% |
| ATTTAACATTATGGTCAGCA+CGG | + | chr1_3:22554204-22554223 | None:intergenic | 30.0% | |
| GCTGACCATAATGTTAAATT+TGG | - | chr1_3:22554205-22554224 | Msa0110080:intron | 30.0% | |
| !!! | TTGGTGATGTATGTGTTTTT+AGG | - | chr1_3:22554224-22554243 | Msa0110080:intron | 30.0% |
| ! | AATGATCATGTCCTTTTCTA+TGG | + | chr1_3:22554296-22554315 | None:intergenic | 30.0% |
| !!! | TATGATGTTTGGTTTTGCAA+TGG | - | chr1_3:22552415-22552434 | Msa0110080:intron | 30.0% |
| CTTCACTAATTTCTCTTGAA+GGG | + | chr1_3:22552561-22552580 | None:intergenic | 30.0% | |
| TCTTCACTAATTTCTCTTGA+AGG | + | chr1_3:22552562-22552581 | None:intergenic | 30.0% | |
| TAGTTCTCTTATAGTTGTTG+AGG | - | chr1_3:22552606-22552625 | Msa0110080:intron | 30.0% | |
| TTAAGGATATTCACAAAGGT+TGG | - | chr1_3:22552773-22552792 | Msa0110080:intron | 30.0% | |
| AAGTATTAATTAGCAACACC+AGG | + | chr1_3:22552849-22552868 | None:intergenic | 30.0% | |
| ATACATGGAAAATGATCTCT+TGG | - | chr1_3:22553000-22553019 | Msa0110080:intron | 30.0% | |
| ! | TGTGCATTGATATCTACATT+AGG | - | chr1_3:22553142-22553161 | Msa0110080:intron | 30.0% |
| ATAGATACAGGACCAATAAT+AGG | - | chr1_3:22553277-22553296 | Msa0110080:intron | 30.0% | |
| AGGTACCTATATCCTATTAT+TGG | + | chr1_3:22553292-22553311 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTTCCAGCTCCAA+GGG | + | chr1_3:22553443-22553462 | None:intergenic | 30.0% |
| TCAAATGGTGTATATTTGCA+GGG | + | chr1_3:22553508-22553527 | None:intergenic | 30.0% | |
| ATCAAATGGTGTATATTTGC+AGG | + | chr1_3:22553509-22553528 | None:intergenic | 30.0% | |
| GAGAAGTAATTTCATAGTCA+AGG | + | chr1_3:22553641-22553660 | None:intergenic | 30.0% | |
| AAAAATATTCACTACGGGTA+TGG | - | chr1_3:22553691-22553710 | Msa0110080:CDS | 30.0% | |
| AAAATATTCACTACGGGTAT+GGG | - | chr1_3:22553692-22553711 | Msa0110080:CDS | 30.0% | |
| GAGTAAGTATATGAGAATTG+AGG | - | chr1_3:22553794-22553813 | Msa0110080:CDS | 30.0% | |
| ATTGAGGATAAAAATAGGGA+AGG | - | chr1_3:22553810-22553829 | Msa0110080:CDS | 30.0% | |
| GAAAACACATAATCCAAAAC+AGG | - | chr1_3:22554030-22554049 | Msa0110080:CDS | 30.0% | |
| ! | TTATTTGGTATGACCTGTTT+TGG | + | chr1_3:22554046-22554065 | None:intergenic | 30.0% |
| ! | TACCAAATAATTTTGCTACG+AGG | - | chr1_3:22554056-22554075 | Msa0110080:intron | 30.0% |
| ATTTAACATTATGGTCAGCA+CGG | + | chr1_3:22554204-22554223 | None:intergenic | 30.0% | |
| GCTGACCATAATGTTAAATT+TGG | - | chr1_3:22554205-22554224 | Msa0110080:intron | 30.0% | |
| !!! | TTGGTGATGTATGTGTTTTT+AGG | - | chr1_3:22554224-22554243 | Msa0110080:intron | 30.0% |
| ! | AATGATCATGTCCTTTTCTA+TGG | + | chr1_3:22554296-22554315 | None:intergenic | 30.0% |
| ! | TACCAGTTTTCCTTCTTGAA+GGG | + | chr1_3:22552088-22552107 | None:intergenic | 35.0% |
| ! | TTACCAGTTTTCCTTCTTGA+AGG | + | chr1_3:22552089-22552108 | None:intergenic | 35.0% |
| ATGTCTTCTCACAAAACTTG+CGG | + | chr1_3:22552314-22552333 | None:intergenic | 35.0% | |
| !! | CAAGTTTTGTGAGAAGACAT+TGG | - | chr1_3:22552314-22552333 | Msa0110080:intron | 35.0% |
| !!! | ATGTTTGGTTTTGCAATGGT+TGG | - | chr1_3:22552419-22552438 | Msa0110080:intron | 35.0% |
| ! | TCTGAGTGATTCACAACTTT+TGG | - | chr1_3:22552465-22552484 | Msa0110080:intron | 35.0% |
| TATGAAATGTTGCATGTGCT+TGG | + | chr1_3:22552750-22552769 | None:intergenic | 35.0% | |
| ! | CATAGAGTTTTACGAGAAAG+TGG | - | chr1_3:22552925-22552944 | Msa0110080:intron | 35.0% |
| ATGCGAAGCAATCTTTATCA+GGG | + | chr1_3:22552964-22552983 | None:intergenic | 35.0% | |
| ! | TATGATGCAAAAGGCATACA+TGG | - | chr1_3:22552985-22553004 | Msa0110080:intron | 35.0% |
| CAGGACCAATAATAGGATAT+AGG | - | chr1_3:22553284-22553303 | Msa0110080:intron | 35.0% | |
| ! | AGTTCTCTATTTTCCTTCCA+CGG | - | chr1_3:22553378-22553397 | Msa0110080:CDS | 35.0% |
| !!! | GTTTTTTTTTTCCAGCTCCA+AGG | + | chr1_3:22553444-22553463 | None:intergenic | 35.0% |
| GGGTAGACTTAAATTAGACT+GGG | + | chr1_3:22553569-22553588 | None:intergenic | 35.0% | |
| TGGGTAGACTTAAATTAGAC+TGG | + | chr1_3:22553570-22553589 | None:intergenic | 35.0% | |
| AAATATTCACTACGGGTATG+GGG | - | chr1_3:22553693-22553712 | Msa0110080:CDS | 35.0% | |
| CACAATCCATCATGTAGATT+AGG | + | chr1_3:22553869-22553888 | None:intergenic | 35.0% | |
| TGCCTCGTAGCAAAATTATT+TGG | + | chr1_3:22554061-22554080 | None:intergenic | 35.0% | |
| AATTCAGAATAAATGGGGGT+TGG | - | chr1_3:22554170-22554189 | Msa0110080:intron | 35.0% | |
| ! | TACCAGTTTTCCTTCTTGAA+GGG | + | chr1_3:22552088-22552107 | None:intergenic | 35.0% |
| ! | TTACCAGTTTTCCTTCTTGA+AGG | + | chr1_3:22552089-22552108 | None:intergenic | 35.0% |
| ATGTCTTCTCACAAAACTTG+CGG | + | chr1_3:22552314-22552333 | None:intergenic | 35.0% | |
| !! | CAAGTTTTGTGAGAAGACAT+TGG | - | chr1_3:22552314-22552333 | Msa0110080:intron | 35.0% |
| !!! | ATGTTTGGTTTTGCAATGGT+TGG | - | chr1_3:22552419-22552438 | Msa0110080:intron | 35.0% |
| ! | TCTGAGTGATTCACAACTTT+TGG | - | chr1_3:22552465-22552484 | Msa0110080:intron | 35.0% |
| TATGAAATGTTGCATGTGCT+TGG | + | chr1_3:22552750-22552769 | None:intergenic | 35.0% | |
| ! | CATAGAGTTTTACGAGAAAG+TGG | - | chr1_3:22552925-22552944 | Msa0110080:intron | 35.0% |
| ATGCGAAGCAATCTTTATCA+GGG | + | chr1_3:22552964-22552983 | None:intergenic | 35.0% | |
| ! | TATGATGCAAAAGGCATACA+TGG | - | chr1_3:22552985-22553004 | Msa0110080:intron | 35.0% |
| CAGGACCAATAATAGGATAT+AGG | - | chr1_3:22553284-22553303 | Msa0110080:intron | 35.0% | |
| ! | AGTTCTCTATTTTCCTTCCA+CGG | - | chr1_3:22553378-22553397 | Msa0110080:CDS | 35.0% |
| !!! | GTTTTTTTTTTCCAGCTCCA+AGG | + | chr1_3:22553444-22553463 | None:intergenic | 35.0% |
| GGGTAGACTTAAATTAGACT+GGG | + | chr1_3:22553569-22553588 | None:intergenic | 35.0% | |
| TGGGTAGACTTAAATTAGAC+TGG | + | chr1_3:22553570-22553589 | None:intergenic | 35.0% | |
| AAATATTCACTACGGGTATG+GGG | - | chr1_3:22553693-22553712 | Msa0110080:CDS | 35.0% | |
| CACAATCCATCATGTAGATT+AGG | + | chr1_3:22553869-22553888 | None:intergenic | 35.0% | |
| TGCCTCGTAGCAAAATTATT+TGG | + | chr1_3:22554061-22554080 | None:intergenic | 35.0% | |
| AATTCAGAATAAATGGGGGT+TGG | - | chr1_3:22554170-22554189 | Msa0110080:intron | 35.0% | |
| TCTTCTCATGAACCTGATCA+TGG | - | chr1_3:22552030-22552049 | Msa0110080:CDS | 40.0% | |
| AAAAAGTGGACACCATGATC+AGG | + | chr1_3:22552045-22552064 | None:intergenic | 40.0% | |
| !! | CTTGAAAGTACCCTTCAAGA+AGG | - | chr1_3:22552075-22552094 | Msa0110080:CDS | 40.0% |
| TACCCTTCAAGAAGGAAAAC+TGG | - | chr1_3:22552083-22552102 | Msa0110080:CDS | 40.0% | |
| TGTCTTCTCACAAAACTTGC+GGG | + | chr1_3:22552313-22552332 | None:intergenic | 40.0% | |
| TTTGTGAGAAGACATTGGCA+AGG | - | chr1_3:22552319-22552338 | Msa0110080:intron | 40.0% | |
| TAGGAAGTCGTAGAGTAACT+GGG | + | chr1_3:22552354-22552373 | None:intergenic | 40.0% | |
| TTAGGAAGTCGTAGAGTAAC+TGG | + | chr1_3:22552355-22552374 | None:intergenic | 40.0% | |
| GTGATTGTACTCCGTAAATG+TGG | - | chr1_3:22552520-22552539 | Msa0110080:intron | 40.0% | |
| ! | GAAGACGGTGATGAAGATTT+TGG | + | chr1_3:22552658-22552677 | None:intergenic | 40.0% |
| ! | CTTGGACTTTTCTCTTCTCA+AGG | + | chr1_3:22552732-22552751 | None:intergenic | 40.0% |
| CATGCGAAGCAATCTTTATC+AGG | + | chr1_3:22552965-22552984 | None:intergenic | 40.0% | |
| CTTCGCATGTATGATGCAAA+AGG | - | chr1_3:22552976-22552995 | Msa0110080:intron | 40.0% | |
| AAAACTCGTCAAATCTGGGT+GGG | + | chr1_3:22553204-22553223 | None:intergenic | 40.0% | |
| AGGGAAAACTCGTCAAATCT+GGG | + | chr1_3:22553208-22553227 | None:intergenic | 40.0% | |
| ACGAGTTTGGATATGAGTTC+GGG | + | chr1_3:22553324-22553343 | None:intergenic | 40.0% | |
| GACGAGTTTGGATATGAGTT+CGG | + | chr1_3:22553325-22553344 | None:intergenic | 40.0% | |
| TTGCATTACAATAGTGCCCT+TGG | - | chr1_3:22553424-22553443 | Msa0110080:CDS | 40.0% | |
| GTATATTTGCAGGGACTGAA+TGG | + | chr1_3:22553499-22553518 | None:intergenic | 40.0% | |
| ATCCTCGTTGAGTATGACTA+GGG | - | chr1_3:22553767-22553786 | Msa0110080:CDS | 40.0% | |
| GTAGATTAGGCATGGTCAAT+GGG | + | chr1_3:22553856-22553875 | None:intergenic | 40.0% | |
| TGTAGATTAGGCATGGTCAA+TGG | + | chr1_3:22553857-22553876 | None:intergenic | 40.0% | |
| ACCATGCCTAATCTACATGA+TGG | - | chr1_3:22553860-22553879 | Msa0110080:CDS | 40.0% | |
| TCCATCATGTAGATTAGGCA+TGG | + | chr1_3:22553864-22553883 | None:intergenic | 40.0% | |
| TCTTCTCATGAACCTGATCA+TGG | - | chr1_3:22552030-22552049 | Msa0110080:CDS | 40.0% | |
| AAAAAGTGGACACCATGATC+AGG | + | chr1_3:22552045-22552064 | None:intergenic | 40.0% | |
| !! | CTTGAAAGTACCCTTCAAGA+AGG | - | chr1_3:22552075-22552094 | Msa0110080:CDS | 40.0% |
| TACCCTTCAAGAAGGAAAAC+TGG | - | chr1_3:22552083-22552102 | Msa0110080:CDS | 40.0% | |
| TGTCTTCTCACAAAACTTGC+GGG | + | chr1_3:22552313-22552332 | None:intergenic | 40.0% | |
| TTTGTGAGAAGACATTGGCA+AGG | - | chr1_3:22552319-22552338 | Msa0110080:intron | 40.0% | |
| TAGGAAGTCGTAGAGTAACT+GGG | + | chr1_3:22552354-22552373 | None:intergenic | 40.0% | |
| TTAGGAAGTCGTAGAGTAAC+TGG | + | chr1_3:22552355-22552374 | None:intergenic | 40.0% | |
| GTGATTGTACTCCGTAAATG+TGG | - | chr1_3:22552520-22552539 | Msa0110080:intron | 40.0% | |
| ! | GAAGACGGTGATGAAGATTT+TGG | + | chr1_3:22552658-22552677 | None:intergenic | 40.0% |
| ! | CTTGGACTTTTCTCTTCTCA+AGG | + | chr1_3:22552732-22552751 | None:intergenic | 40.0% |
| CATGCGAAGCAATCTTTATC+AGG | + | chr1_3:22552965-22552984 | None:intergenic | 40.0% | |
| CTTCGCATGTATGATGCAAA+AGG | - | chr1_3:22552976-22552995 | Msa0110080:intron | 40.0% | |
| AAAACTCGTCAAATCTGGGT+GGG | + | chr1_3:22553204-22553223 | None:intergenic | 40.0% | |
| AGGGAAAACTCGTCAAATCT+GGG | + | chr1_3:22553208-22553227 | None:intergenic | 40.0% | |
| ACGAGTTTGGATATGAGTTC+GGG | + | chr1_3:22553324-22553343 | None:intergenic | 40.0% | |
| GACGAGTTTGGATATGAGTT+CGG | + | chr1_3:22553325-22553344 | None:intergenic | 40.0% | |
| TTGCATTACAATAGTGCCCT+TGG | - | chr1_3:22553424-22553443 | Msa0110080:CDS | 40.0% | |
| GTATATTTGCAGGGACTGAA+TGG | + | chr1_3:22553499-22553518 | None:intergenic | 40.0% | |
| ATCCTCGTTGAGTATGACTA+GGG | - | chr1_3:22553767-22553786 | Msa0110080:CDS | 40.0% | |
| GTAGATTAGGCATGGTCAAT+GGG | + | chr1_3:22553856-22553875 | None:intergenic | 40.0% | |
| TGTAGATTAGGCATGGTCAA+TGG | + | chr1_3:22553857-22553876 | None:intergenic | 40.0% | |
| ACCATGCCTAATCTACATGA+TGG | - | chr1_3:22553860-22553879 | Msa0110080:CDS | 40.0% | |
| TCCATCATGTAGATTAGGCA+TGG | + | chr1_3:22553864-22553883 | None:intergenic | 40.0% | |
| TTCGGTCGGGTAACGAATAT+GGG | + | chr1_3:22553181-22553200 | None:intergenic | 45.0% | |
| GAAAACTCGTCAAATCTGGG+TGG | + | chr1_3:22553205-22553224 | None:intergenic | 45.0% | |
| CAGGGAAAACTCGTCAAATC+TGG | + | chr1_3:22553209-22553228 | None:intergenic | 45.0% | |
| TTCCCTGCTTTGACTGAGTT+TGG | - | chr1_3:22553222-22553241 | Msa0110080:intron | 45.0% | |
| TCCCTGCTTTGACTGAGTTT+GGG | - | chr1_3:22553223-22553242 | Msa0110080:intron | 45.0% | |
| ACCCAAACTCAGTCAAAGCA+GGG | + | chr1_3:22553227-22553246 | None:intergenic | 45.0% | |
| TTTGGATATGAGTTCGGGGT+TGG | + | chr1_3:22553319-22553338 | None:intergenic | 45.0% | |
| CGAGTTTGGATATGAGTTCG+GGG | + | chr1_3:22553323-22553342 | None:intergenic | 45.0% | |
| ATACACCAGAGTGACATCCA+GGG | + | chr1_3:22553347-22553366 | None:intergenic | 45.0% | |
| ATGCAAAAGAGAGAAGCCGA+AGG | + | chr1_3:22553410-22553429 | None:intergenic | 45.0% | |
| CATCCTCGTTGAGTATGACT+AGG | - | chr1_3:22553766-22553785 | Msa0110080:CDS | 45.0% | |
| TACCCTAGTCATACTCAACG+AGG | + | chr1_3:22553772-22553791 | None:intergenic | 45.0% | |
| TTCGGTCGGGTAACGAATAT+GGG | + | chr1_3:22553181-22553200 | None:intergenic | 45.0% | |
| GAAAACTCGTCAAATCTGGG+TGG | + | chr1_3:22553205-22553224 | None:intergenic | 45.0% | |
| CAGGGAAAACTCGTCAAATC+TGG | + | chr1_3:22553209-22553228 | None:intergenic | 45.0% | |
| TTCCCTGCTTTGACTGAGTT+TGG | - | chr1_3:22553222-22553241 | Msa0110080:intron | 45.0% | |
| TCCCTGCTTTGACTGAGTTT+GGG | - | chr1_3:22553223-22553242 | Msa0110080:intron | 45.0% | |
| ACCCAAACTCAGTCAAAGCA+GGG | + | chr1_3:22553227-22553246 | None:intergenic | 45.0% | |
| TTTGGATATGAGTTCGGGGT+TGG | + | chr1_3:22553319-22553338 | None:intergenic | 45.0% | |
| CGAGTTTGGATATGAGTTCG+GGG | + | chr1_3:22553323-22553342 | None:intergenic | 45.0% | |
| ATACACCAGAGTGACATCCA+GGG | + | chr1_3:22553347-22553366 | None:intergenic | 45.0% | |
| ATGCAAAAGAGAGAAGCCGA+AGG | + | chr1_3:22553410-22553429 | None:intergenic | 45.0% | |
| CATCCTCGTTGAGTATGACT+AGG | - | chr1_3:22553766-22553785 | Msa0110080:CDS | 45.0% | |
| TACCCTAGTCATACTCAACG+AGG | + | chr1_3:22553772-22553791 | None:intergenic | 45.0% | |
| ! | CTTTTGCCTCGCGAAGATGA+AGG | + | chr1_3:22552634-22552653 | None:intergenic | 50.0% |
| GTTCGGTCGGGTAACGAATA+TGG | + | chr1_3:22553182-22553201 | None:intergenic | 50.0% | |
| ! | TCGTCAAATCTGGGTGGGTT+CGG | + | chr1_3:22553199-22553218 | None:intergenic | 50.0% |
| GACCCAAACTCAGTCAAAGC+AGG | + | chr1_3:22553228-22553247 | None:intergenic | 50.0% | |
| !! | ATGAGTTCGGGGTTGGTACT+AGG | + | chr1_3:22553312-22553331 | None:intergenic | 50.0% |
| CTCATATCCAAACTCGTCCC+TGG | - | chr1_3:22553327-22553346 | Msa0110080:intron | 50.0% | |
| CATACACCAGAGTGACATCC+AGG | + | chr1_3:22553348-22553367 | None:intergenic | 50.0% | |
| TACAATAGTGCCCTTGGAGC+TGG | - | chr1_3:22553430-22553449 | Msa0110080:CDS | 50.0% | |
| TTAGGCATGGTCAATGGGTG+AGG | + | chr1_3:22553851-22553870 | None:intergenic | 50.0% | |
| ! | TTGCTACGAGGCATCTGCAA+AGG | - | chr1_3:22554068-22554087 | Msa0110080:intron | 50.0% |
| ! | TACGAGGCATCTGCAAAGGA+TGG | - | chr1_3:22554072-22554091 | Msa0110080:intron | 50.0% |
| AGGCATCTGCAAAGGATGGA+AGG | - | chr1_3:22554076-22554095 | Msa0110080:intron | 50.0% | |
| ! | CTTTTGCCTCGCGAAGATGA+AGG | + | chr1_3:22552634-22552653 | None:intergenic | 50.0% |
| GTTCGGTCGGGTAACGAATA+TGG | + | chr1_3:22553182-22553201 | None:intergenic | 50.0% | |
| ! | TCGTCAAATCTGGGTGGGTT+CGG | + | chr1_3:22553199-22553218 | None:intergenic | 50.0% |
| GACCCAAACTCAGTCAAAGC+AGG | + | chr1_3:22553228-22553247 | None:intergenic | 50.0% | |
| !! | ATGAGTTCGGGGTTGGTACT+AGG | + | chr1_3:22553312-22553331 | None:intergenic | 50.0% |
| CTCATATCCAAACTCGTCCC+TGG | - | chr1_3:22553327-22553346 | Msa0110080:intron | 50.0% | |
| CATACACCAGAGTGACATCC+AGG | + | chr1_3:22553348-22553367 | None:intergenic | 50.0% | |
| TACAATAGTGCCCTTGGAGC+TGG | - | chr1_3:22553430-22553449 | Msa0110080:CDS | 50.0% | |
| TTAGGCATGGTCAATGGGTG+AGG | + | chr1_3:22553851-22553870 | None:intergenic | 50.0% | |
| ! | TTGCTACGAGGCATCTGCAA+AGG | - | chr1_3:22554068-22554087 | Msa0110080:intron | 50.0% |
| ! | TACGAGGCATCTGCAAAGGA+TGG | - | chr1_3:22554072-22554091 | Msa0110080:intron | 50.0% |
| AGGCATCTGCAAAGGATGGA+AGG | - | chr1_3:22554076-22554095 | Msa0110080:intron | 50.0% | |
| ACCCTATCACGCTCTCTGCT+AGG | - | chr1_3:22552145-22552164 | Msa0110080:CDS | 55.0% | |
| ! | CCCTAGCAGAGAGCGTGATA+GGG | + | chr1_3:22552149-22552168 | None:intergenic | 55.0% |
| CCCTATCACGCTCTCTGCTA+GGG | - | chr1_3:22552146-22552165 | Msa0110080:CDS | 55.0% | |
| ! | ACCCTAGCAGAGAGCGTGAT+AGG | + | chr1_3:22552150-22552169 | None:intergenic | 55.0% |
| GAGGATCCTTCATCTTCGCG+AGG | - | chr1_3:22552625-22552644 | Msa0110080:intron | 55.0% | |
| ! | AAATCTGGGTGGGTTCGGTC+GGG | + | chr1_3:22553194-22553213 | None:intergenic | 55.0% |
| ! | CAAATCTGGGTGGGTTCGGT+CGG | + | chr1_3:22553195-22553214 | None:intergenic | 55.0% |
| GTGACATCCAGGGACGAGTT+TGG | + | chr1_3:22553337-22553356 | None:intergenic | 55.0% | |
| CCTTCCACGGCTCATACCTT+CGG | - | chr1_3:22553391-22553410 | Msa0110080:CDS | 55.0% | |
| TACGGGTATGGGGATGAGAC+AGG | - | chr1_3:22553703-22553722 | Msa0110080:CDS | 55.0% | |
| ACGGGTATGGGGATGAGACA+GGG | - | chr1_3:22553704-22553723 | Msa0110080:CDS | 55.0% | |
| GAATCTCACCCCGTCCCTAT+GGG | + | chr1_3:22553739-22553758 | None:intergenic | 55.0% | |
| TGAATCTCACCCCGTCCCTA+TGG | + | chr1_3:22553740-22553759 | None:intergenic | 55.0% | |
| ACCCTATCACGCTCTCTGCT+AGG | - | chr1_3:22552145-22552164 | Msa0110080:CDS | 55.0% | |
| ! | CCCTAGCAGAGAGCGTGATA+GGG | + | chr1_3:22552149-22552168 | None:intergenic | 55.0% |
| CCCTATCACGCTCTCTGCTA+GGG | - | chr1_3:22552146-22552165 | Msa0110080:CDS | 55.0% | |
| ! | ACCCTAGCAGAGAGCGTGAT+AGG | + | chr1_3:22552150-22552169 | None:intergenic | 55.0% |
| GAGGATCCTTCATCTTCGCG+AGG | - | chr1_3:22552625-22552644 | Msa0110080:intron | 55.0% | |
| ! | AAATCTGGGTGGGTTCGGTC+GGG | + | chr1_3:22553194-22553213 | None:intergenic | 55.0% |
| ! | CAAATCTGGGTGGGTTCGGT+CGG | + | chr1_3:22553195-22553214 | None:intergenic | 55.0% |
| GTGACATCCAGGGACGAGTT+TGG | + | chr1_3:22553337-22553356 | None:intergenic | 55.0% | |
| CCTTCCACGGCTCATACCTT+CGG | - | chr1_3:22553391-22553410 | Msa0110080:CDS | 55.0% | |
| TACGGGTATGGGGATGAGAC+AGG | - | chr1_3:22553703-22553722 | Msa0110080:CDS | 55.0% | |
| ACGGGTATGGGGATGAGACA+GGG | - | chr1_3:22553704-22553723 | Msa0110080:CDS | 55.0% | |
| GAATCTCACCCCGTCCCTAT+GGG | + | chr1_3:22553739-22553758 | None:intergenic | 55.0% | |
| TGAATCTCACCCCGTCCCTA+TGG | + | chr1_3:22553740-22553759 | None:intergenic | 55.0% | |
| CTCGTCCCTGGATGTCACTC+TGG | - | chr1_3:22553339-22553358 | Msa0110080:CDS | 60.0% | |
| ! | CCGAAGGTATGAGCCGTGGA+AGG | + | chr1_3:22553394-22553413 | None:intergenic | 60.0% |
| ! | GAAGCCGAAGGTATGAGCCG+TGG | + | chr1_3:22553398-22553417 | None:intergenic | 60.0% |
| ACAGGGATGCCCGAACCCAT+AGG | - | chr1_3:22553721-22553740 | Msa0110080:CDS | 60.0% | |
| CAGGGATGCCCGAACCCATA+GGG | - | chr1_3:22553722-22553741 | Msa0110080:CDS | 60.0% | |
| GATGCCCGAACCCATAGGGA+CGG | - | chr1_3:22553726-22553745 | Msa0110080:CDS | 60.0% | |
| ATGCCCGAACCCATAGGGAC+GGG | - | chr1_3:22553727-22553746 | Msa0110080:CDS | 60.0% | |
| TCACCCCGTCCCTATGGGTT+CGG | + | chr1_3:22553734-22553753 | None:intergenic | 60.0% | |
| GGCATGGTCAATGGGTGAGG+TGG | + | chr1_3:22553848-22553867 | None:intergenic | 60.0% | |
| CTCGTCCCTGGATGTCACTC+TGG | - | chr1_3:22553339-22553358 | Msa0110080:CDS | 60.0% | |
| ! | CCGAAGGTATGAGCCGTGGA+AGG | + | chr1_3:22553394-22553413 | None:intergenic | 60.0% |
| ! | GAAGCCGAAGGTATGAGCCG+TGG | + | chr1_3:22553398-22553417 | None:intergenic | 60.0% |
| ACAGGGATGCCCGAACCCAT+AGG | - | chr1_3:22553721-22553740 | Msa0110080:CDS | 60.0% | |
| CAGGGATGCCCGAACCCATA+GGG | - | chr1_3:22553722-22553741 | Msa0110080:CDS | 60.0% | |
| GATGCCCGAACCCATAGGGA+CGG | - | chr1_3:22553726-22553745 | Msa0110080:CDS | 60.0% | |
| ATGCCCGAACCCATAGGGAC+GGG | - | chr1_3:22553727-22553746 | Msa0110080:CDS | 60.0% | |
| TCACCCCGTCCCTATGGGTT+CGG | + | chr1_3:22553734-22553753 | None:intergenic | 60.0% | |
| GGCATGGTCAATGGGTGAGG+TGG | + | chr1_3:22553848-22553867 | None:intergenic | 60.0% | |
| TGCCCGAACCCATAGGGACG+GGG | - | chr1_3:22553728-22553747 | Msa0110080:CDS | 65.0% | |
| CACCCCGTCCCTATGGGTTC+GGG | + | chr1_3:22553733-22553752 | None:intergenic | 65.0% | |
| TGCCCGAACCCATAGGGACG+GGG | - | chr1_3:22553728-22553747 | Msa0110080:CDS | 65.0% | |
| CACCCCGTCCCTATGGGTTC+GGG | + | chr1_3:22553733-22553752 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 22552027 | 22554327 | 22552027 | ID=Msa0110080;Name=Msa0110080 |
| chr1_3 | mRNA | 22552027 | 22554327 | 22552027 | ID=Msa0110080-mRNA-1;Parent=Msa0110080;Name=Msa0110080-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|4|0|323 |
| chr1_3 | exon | 22554250 | 22554327 | 22554250 | ID=Msa0110080-mRNA-1:exon:7980;Parent=Msa0110080-mRNA-1 |
| chr1_3 | exon | 22553564 | 22554050 | 22553564 | ID=Msa0110080-mRNA-1:exon:7979;Parent=Msa0110080-mRNA-1 |
| chr1_3 | exon | 22553333 | 22553463 | 22553333 | ID=Msa0110080-mRNA-1:exon:7978;Parent=Msa0110080-mRNA-1 |
| chr1_3 | exon | 22552027 | 22552302 | 22552027 | ID=Msa0110080-mRNA-1:exon:7977;Parent=Msa0110080-mRNA-1 |
| chr1_3 | CDS | 22554250 | 22554327 | 22554250 | ID=Msa0110080-mRNA-1:cds;Parent=Msa0110080-mRNA-1 |
| chr1_3 | CDS | 22553564 | 22554050 | 22553564 | ID=Msa0110080-mRNA-1:cds;Parent=Msa0110080-mRNA-1 |
| chr1_3 | CDS | 22553333 | 22553463 | 22553333 | ID=Msa0110080-mRNA-1:cds;Parent=Msa0110080-mRNA-1 |
| chr1_3 | CDS | 22552027 | 22552302 | 22552027 | ID=Msa0110080-mRNA-1:cds;Parent=Msa0110080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
