AlfalfaGEDB | Msa0110310

M. sativa cultivar zhongmu-4 / Msa0110310

KEGG: K11420
GO: GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0006325 GO:0006342 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008276 GO:0008327 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010428 GO:0010429 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0031047 GO:0031048 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0036094 GO:0036211 GO:0040029 GO:0042054 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF05033.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0110310	XP_013448347.2	90.783	217	16	1	11	223	275	491	1.22e-138	409

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0110310	sp\|Q8VZ17\|SUVH6_ARATH	42.339	248	93	6	12	223	509	742	6.77e-51	179

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0110310	A0A396H1J2	90.783	217	16	1	11	223	275	491	5.81e-139	409

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TFs/TRs:

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Gene ID	Type	Classification
Msa0110310	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0110310	MtrunA17_Chr7g0232811	90.783	217	16	1	11	223	275	491	1.12e-142	409
Msa0110310	MtrunA17_Chr7g0232841	89.908	218	17	2	11	223	263	480	6.07e-139	399
Msa0110310	MtrunA17_Chr7g0232981	79.263	217	27	2	11	223	266	468	7.29e-112	330
Msa0110310	MtrunA17_Chr7g0232871	92.727	110	8	0	62	171	1	110	9.95e-70	208
Msa0110310	MtrunA17_Chr5g0399801	43.651	252	95	5	5	223	804	1041	7.75e-57	194
Msa0110310	MtrunA17_Chr4g0003511	42.683	246	94	5	11	223	773	1004	3.42e-54	186
Msa0110310	MtrunA17_Chr4g0003501	42.683	246	92	5	11	223	678	907	7.26e-52	179
Msa0110310	MtrunA17_Chr7g0232751	94.366	71	4	0	153	223	1	71	9.99e-45	145
Msa0110310	MtrunA17_Chr1g0170651	31.418	261	100	5	1	223	284	503	2.53e-32	123
Msa0110310	MtrunA17_Chr8g0369301	28.287	251	132	5	7	223	482	718	1.86e-28	112

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0110310	AT2G22740.2	42.339	248	93	6	12	223	509	742	6.89e-52	179
Msa0110310	AT2G22740.1	42.339	248	93	6	12	223	509	742	6.89e-52	179
Msa0110310	AT2G35160.5	40.164	244	74	5	12	223	507	710	2.45e-49	172
Msa0110310	AT2G35160.2	40.164	244	74	5	12	223	543	746	3.07e-49	172
Msa0110310	AT2G35160.3	40.164	244	74	5	12	223	543	746	3.07e-49	172
Msa0110310	AT2G35160.1	40.164	244	74	5	12	223	543	746	3.07e-49	172
Msa0110310	AT2G35160.4	40.164	244	74	5	12	223	543	746	3.07e-49	172
Msa0110310	AT5G04940.2	30.279	251	117	8	12	222	388	620	3.84e-25	103
Msa0110310	AT5G04940.1	30.279	251	117	8	12	222	388	620	3.84e-25	103
Msa0110310	AT5G13960.2	30.952	252	126	8	11	223	200	442	7.96e-25	102

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Find 42 sgRNAs with CRISPR-Local

Find 47 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATTTCGAGCAAACAAAT+TGG	0.261209	1_3:-23100831	None:intergenic
AAGACTAAGGCGAAAGGATG+GGG	0.542189	1_3:+23100491	Msa0110310:CDS
ACAAATTGGGAGAACAACTA+TGG	0.427505	1_3:-23100817	None:intergenic
ACAATTGATGCTGCTAAGTA+TGG	0.305938	1_3:+23100773	Msa0110310:CDS
ACATTTCGAGCAAACAAATT+GGG	0.449844	1_3:-23100830	None:intergenic
ACTATCACATCGATCATCAA+TGG	0.565161	1_3:-23100741	None:intergenic
AGAACATTTACGCCCAACAG+AGG	0.655904	1_3:-23100378	None:intergenic
AGAAGCTGTTCCTATATGTG+TGG	0.665038	1_3:+23100274	Msa0110310:CDS
AGAAGCTTCAAGTGGTAAAG+AGG	0.540440	1_3:+23100718	Msa0110310:CDS
AGGTGAGATTATTGAAGATC+AGG	0.383100	1_3:+23100565	Msa0110310:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATACGATTAACCACACATAT+AGG	-	chr1_3:23100287-23100306	None:intergenic	30.0%
TCACAAATAAAACTTCCAGA+AGG	-	chr1_3:23100539-23100558	None:intergenic	30.0%
ACATTTCGAGCAAACAAATT+GGG	-	chr1_3:23100833-23100852	None:intergenic	30.0%
AACATTTCGAGCAAACAAAT+TGG	-	chr1_3:23100834-23100853	None:intergenic	30.0%
GTGGTTAATCGTATAGATTC+TGG	+	chr1_3:23100293-23100312	Msa0110310:CDS	35.0%
TAATCGTATAGATTCTGGCA+AGG	+	chr1_3:23100298-23100317	Msa0110310:CDS	35.0%
CTCGTAACATTTATCCTGAA+TGG	+	chr1_3:23100342-23100361	Msa0110310:CDS	35.0%
AGGTGAGATTATTGAAGATC+AGG	+	chr1_3:23100565-23100584	Msa0110310:CDS	35.0%
TTCACAAGGTCTATAGTTCA+TGG	+	chr1_3:23100642-23100661	Msa0110310:CDS	35.0%
TCACAAGGTCTATAGTTCAT+GGG	+	chr1_3:23100643-23100662	Msa0110310:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	23100224	23100901	23100224	ID=Msa0110310;Name=Msa0110310
chr1_3	mRNA	23100224	23100901	23100224	ID=Msa0110310-mRNA-1;Parent=Msa0110310;Name=Msa0110310-mRNA-1;_AED=0.16;_eAED=0.17;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|225
chr1_3	exon	23100224	23100901	23100224	ID=Msa0110310-mRNA-1:exon:8104;Parent=Msa0110310-mRNA-1
chr1_3	CDS	23100224	23100901	23100224	ID=Msa0110310-mRNA-1:cds;Parent=Msa0110310-mRNA-1

Gene Sequence

>Msa0110310

TTGGTTAATCGTAAAAGAAGCTGTTCCTATAAAGATATTTCTAATGGAAAAGAAGCTGTTCCTATATGTGTGGTTAATCGTATAGATTCTGGCAAGGTTCCATATTTTCAATACATTACTCGTAACATTTATCCTGAATGGCTTTTCGAAGATTCCTCTGTTGGGCGTAAATGTTCTGATTCAATGAAATTTGCCTGTGCTCTTAAGAGTGGAGGGAAAATTCCTAGAGTAAAGAAAAATGAGATTAAATTTAAGCTTCAAATTTTCAAGACTAAGGCGAAAGGATGGGGTGTGAGATCAGAGAATGCAATTCCTTCTGGAAGTTTTATTTGTGAGTATTTAGGTGAGATTATTGAAGATCAGGAAGCTTTGAAAATAGTTGATAATGATGAGTATTTATTTAATATTGGCAATTATATTCACAAGGTCTATAGTTCATGGGAAGAGGATTCATATATGGTTGATAGTAAGGAGATGAGTTCATATCAACCCTTAGAAGCTTCAAGTGGTAAAGAGGCCATTGATGATCGATGTGATAGTGGTAGGTTTACAATTGATGCTGCTAAGTATGGTAACGTGGCAAGGTTTATCAACCATAGTTGTTCTCCCAATTTGTTTGCTCGAAATGTTCTTTACAATGATGATGATCTGAGGATTCCACACATCATGCATGAATGA

Protein sequence

>Msa0110310

LVNRKRSCSYKDISNGKEAVPICVVNRIDSGKVPYFQYITRNIYPEWLFEDSSVGRKCSDSMKFACALKSGGKIPRVKKNEIKFKLQIFKTKAKGWGVRSENAIPSGSFICEYLGEIIEDQEALKIVDNDEYLFNIGNYIHKVYSSWEEDSYMVDSKEMSSYQPLEASSGKEAIDDRCDSGRFTIDAAKYGNVARFINHSCSPNLFARNVLYNDDDLRIPHIMHE*