Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110530 | AES60398.2 | 83.333 | 108 | 18 | 0 | 1 | 108 | 1 | 108 | 4.38e-49 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110530 | G7I6L4 | 83.333 | 108 | 18 | 0 | 1 | 108 | 1 | 108 | 2.09e-49 | 166 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0110530 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110530 | MtrunA17_Chr7g0235271 | 73.469 | 49 | 13 | 0 | 141 | 189 | 1 | 49 | 5.08e-21 | 83.2 |
| Msa0110530 | MtrunA17_Chr8g0362161 | 69.388 | 49 | 15 | 0 | 141 | 189 | 1 | 49 | 5.20e-20 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 33 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAAAAGCTTCAAAGTCTA+TGG | 0.184389 | 1_3:+23391364 | Msa0110530:CDS |
| AAAAGAATGCTTTCAGAAAA+AGG | 0.192726 | 1_3:+23392939 | Msa0110530:CDS |
| CCACAAGCATTACATAGTAT+TGG | 0.402584 | 1_3:-23390709 | None:intergenic |
| ACTTTCTTCAATCCTCCAAT+TGG | 0.415555 | 1_3:-23392857 | None:intergenic |
| ATAACAACAAGGAAAACAAC+TGG | 0.420492 | 1_3:+23392827 | Msa0110530:CDS |
| TGGAGTTTGGTTTGAAAGCT+CGG | 0.432563 | 1_3:-23390836 | None:intergenic |
| CATCCATGAAGCTGACTTGT+CGG | 0.439456 | 1_3:-23392895 | None:intergenic |
| GATCCGACAAGTCAGCTTCA+TGG | 0.456202 | 1_3:+23392892 | Msa0110530:CDS |
| GAAACTAAACTTTGGCGTAA+AGG | 0.456777 | 1_3:+23390673 | Msa0110530:CDS |
| TGCTTGTGGACTACATTTCA+AGG | 0.461822 | 1_3:+23390723 | Msa0110530:CDS |
| ATCAGACCTTGACGTTGAAA+AGG | 0.465983 | 1_3:+23390798 | Msa0110530:CDS |
| GGACTACATTTCAAGGCTAA+AGG | 0.474721 | 1_3:+23390730 | Msa0110530:CDS |
| TCTTCGGAAGATAGTTATCA+AGG | 0.478433 | 1_3:-23390756 | None:intergenic |
| ATCGATTGTGAAGAATCAAA+TGG | 0.491491 | 1_3:+23391332 | Msa0110530:CDS |
| GGAGTTTGGTTTGAAAGCTC+GGG | 0.497343 | 1_3:-23390835 | None:intergenic |
| ATTTGATTCTTCACAATCGA+TGG | 0.523804 | 1_3:-23391330 | None:intergenic |
| CTACTCTCATGCATAAGTCT+TGG | 0.525421 | 1_3:+23393002 | Msa0110530:CDS |
| CATAGTATTGGATTCTCATA+CGG | 0.534177 | 1_3:-23390697 | None:intergenic |
| ACTTGTCGGATCTCCTCTTG+TGG | 0.542057 | 1_3:-23392881 | None:intergenic |
| ACAAGTCAGCTTCATGGATG+AGG | 0.543906 | 1_3:+23392898 | Msa0110530:CDS |
| ACAAAAGCTTCAAAGTCTAT+GGG | 0.556384 | 1_3:+23391365 | Msa0110530:CDS |
| CCAATACTATGTAATGCTTG+TGG | 0.568792 | 1_3:+23390709 | Msa0110530:CDS |
| GACTTATGCATGAGAGTAGG+TGG | 0.580845 | 1_3:-23392998 | None:intergenic |
| GAGCTTTCAAACCAAACTCC+AGG | 0.591419 | 1_3:+23390838 | Msa0110530:CDS |
| ATTGAAGAAAGTTCCACAAG+AGG | 0.598488 | 1_3:+23392868 | Msa0110530:CDS |
| CAGATGCGAGTTATTTCGAA+AGG | 0.599382 | 1_3:-23393031 | None:intergenic |
| CAAGACTTATGCATGAGAGT+AGG | 0.615815 | 1_3:-23393001 | None:intergenic |
| TAACAACAAGGAAAACAACT+GGG | 0.620441 | 1_3:+23392828 | Msa0110530:CDS |
| CTTCGGAAGATAGTTATCAA+GGG | 0.629882 | 1_3:-23390755 | None:intergenic |
| GATTGTGAAGAATCAAATGG+AGG | 0.680011 | 1_3:+23391335 | Msa0110530:CDS |
| AACAACAAGGAAAACAACTG+GGG | 0.698459 | 1_3:+23392829 | Msa0110530:CDS |
| AATAAAGAGGAAGATCAACA+TGG | 0.736999 | 1_3:+23392793 | Msa0110530:intron |
| TGAGAACAAAGATAACAACA+AGG | 0.765280 | 1_3:+23392816 | Msa0110530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAATATATACCAAAATA+TGG | - | chr1_3:23391734-23391753 | None:intergenic | 10.0% |
| !! | TAAAAATAAAATAAATGAGT+GGG | - | chr1_3:23392353-23392372 | None:intergenic | 10.0% |
| !! | ATAAAAATAAAATAAATGAG+TGG | - | chr1_3:23392354-23392373 | None:intergenic | 10.0% |
| !! | TAGTAAAAAAGTAAAAATAA+CGG | + | chr1_3:23392436-23392455 | Msa0110530:intron | 10.0% |
| !! | ATTAAATATATACCAAAATA+TGG | - | chr1_3:23391734-23391753 | None:intergenic | 10.0% |
| !! | TAAAAATAAAATAAATGAGT+GGG | - | chr1_3:23392353-23392372 | None:intergenic | 10.0% |
| !! | ATAAAAATAAAATAAATGAG+TGG | - | chr1_3:23392354-23392373 | None:intergenic | 10.0% |
| !! | TAGTAAAAAAGTAAAAATAA+CGG | + | chr1_3:23392436-23392455 | Msa0110530:intron | 10.0% |
| !!! | ACTTTAAATTTTTTGTAGAA+AGG | + | chr1_3:23391304-23391323 | Msa0110530:intron | 15.0% |
| !! | AAAAAAAAAAATACTCAACT+AGG | - | chr1_3:23392195-23392214 | None:intergenic | 15.0% |
| !! | AAACAAAAAGAAAAGAAAAA+TGG | - | chr1_3:23392312-23392331 | None:intergenic | 15.0% |
| !! | AAAAATAAAATAAATGAGTG+GGG | - | chr1_3:23392352-23392371 | None:intergenic | 15.0% |
| !! | GGTTTATTAGTAATAATATT+AGG | + | chr1_3:23392586-23392605 | Msa0110530:intron | 15.0% |
| !!! | ACTTTAAATTTTTTGTAGAA+AGG | + | chr1_3:23391304-23391323 | Msa0110530:intron | 15.0% |
| !! | AAAAAAAAAAATACTCAACT+AGG | - | chr1_3:23392195-23392214 | None:intergenic | 15.0% |
| !! | AAACAAAAAGAAAAGAAAAA+TGG | - | chr1_3:23392312-23392331 | None:intergenic | 15.0% |
| !! | AAAAATAAAATAAATGAGTG+GGG | - | chr1_3:23392352-23392371 | None:intergenic | 15.0% |
| !! | GGTTTATTAGTAATAATATT+AGG | + | chr1_3:23392586-23392605 | Msa0110530:intron | 15.0% |
| !!! | TATTGCATTTTTTTATTACC+TGG | - | chr1_3:23390859-23390878 | None:intergenic | 20.0% |
| !! | AATAGATGATATAAAATGGA+GGG | - | chr1_3:23390940-23390959 | None:intergenic | 20.0% |
| !! | AAATAGATGATATAAAATGG+AGG | - | chr1_3:23390941-23390960 | None:intergenic | 20.0% |
| !! | GGAAAATAGATGATATAAAA+TGG | - | chr1_3:23390944-23390963 | None:intergenic | 20.0% |
| !! | TTAGATCAATGCATTATTAA+AGG | - | chr1_3:23390965-23390984 | None:intergenic | 20.0% |
| !! | AACACTACTATTTATATATG+AGG | + | chr1_3:23390984-23391003 | Msa0110530:intron | 20.0% |
| !!! | TTTTGAATGAATTGTATTGA+TGG | + | chr1_3:23391077-23391096 | Msa0110530:intron | 20.0% |
| !!! | TTTGAATGAATTGTATTGAT+GGG | + | chr1_3:23391078-23391097 | Msa0110530:intron | 20.0% |
| !! | AAATATATGCTATTAAAGTG+TGG | - | chr1_3:23391221-23391240 | None:intergenic | 20.0% |
| !! | TTATATGTATACATCATACA+CGG | - | chr1_3:23391284-23391303 | None:intergenic | 20.0% |
| !!! | ATTTTGAGAAATGATTTTGA+AGG | + | chr1_3:23391686-23391705 | Msa0110530:intron | 20.0% |
| !!! | TAAGTGTTAAATCCATATTT+TGG | + | chr1_3:23391719-23391738 | Msa0110530:intron | 20.0% |
| !! | ATATTTATTCATTCAGAATG+AGG | - | chr1_3:23392126-23392145 | None:intergenic | 20.0% |
| !!! | TTCTTTTTGTTTTTCCATTT+AGG | + | chr1_3:23392320-23392339 | Msa0110530:intron | 20.0% |
| !! | ATTCTAAATGCAAAACTAAA+TGG | - | chr1_3:23392528-23392547 | None:intergenic | 20.0% |
| !!! | TTAGTTTTGCATTTAGAATT+AGG | + | chr1_3:23392529-23392548 | Msa0110530:intron | 20.0% |
| !! | ACTATAGTAGTTAATTTAGA+TGG | + | chr1_3:23392614-23392633 | Msa0110530:intron | 20.0% |
| !! | AACTAAGATCAATTATCATT+AGG | + | chr1_3:23392669-23392688 | Msa0110530:intron | 20.0% |
| !!! | TTCTTTTCTTTGATTTTGAT+TGG | - | chr1_3:23392926-23392945 | None:intergenic | 20.0% |
| !!! | TATTGCATTTTTTTATTACC+TGG | - | chr1_3:23390859-23390878 | None:intergenic | 20.0% |
| !! | AATAGATGATATAAAATGGA+GGG | - | chr1_3:23390940-23390959 | None:intergenic | 20.0% |
| !! | AAATAGATGATATAAAATGG+AGG | - | chr1_3:23390941-23390960 | None:intergenic | 20.0% |
| !! | GGAAAATAGATGATATAAAA+TGG | - | chr1_3:23390944-23390963 | None:intergenic | 20.0% |
| !! | TTAGATCAATGCATTATTAA+AGG | - | chr1_3:23390965-23390984 | None:intergenic | 20.0% |
| !! | AACACTACTATTTATATATG+AGG | + | chr1_3:23390984-23391003 | Msa0110530:intron | 20.0% |
| !!! | TTTTGAATGAATTGTATTGA+TGG | + | chr1_3:23391077-23391096 | Msa0110530:intron | 20.0% |
| !!! | TTTGAATGAATTGTATTGAT+GGG | + | chr1_3:23391078-23391097 | Msa0110530:intron | 20.0% |
| !! | AAATATATGCTATTAAAGTG+TGG | - | chr1_3:23391221-23391240 | None:intergenic | 20.0% |
| !! | TTATATGTATACATCATACA+CGG | - | chr1_3:23391284-23391303 | None:intergenic | 20.0% |
| !!! | ATTTTGAGAAATGATTTTGA+AGG | + | chr1_3:23391686-23391705 | Msa0110530:intron | 20.0% |
| !!! | TAAGTGTTAAATCCATATTT+TGG | + | chr1_3:23391719-23391738 | Msa0110530:intron | 20.0% |
| !! | ATATTTATTCATTCAGAATG+AGG | - | chr1_3:23392126-23392145 | None:intergenic | 20.0% |
| !!! | TTCTTTTTGTTTTTCCATTT+AGG | + | chr1_3:23392320-23392339 | Msa0110530:intron | 20.0% |
| !! | ATTCTAAATGCAAAACTAAA+TGG | - | chr1_3:23392528-23392547 | None:intergenic | 20.0% |
| !!! | TTAGTTTTGCATTTAGAATT+AGG | + | chr1_3:23392529-23392548 | Msa0110530:intron | 20.0% |
| !! | ACTATAGTAGTTAATTTAGA+TGG | + | chr1_3:23392614-23392633 | Msa0110530:intron | 20.0% |
| !! | AACTAAGATCAATTATCATT+AGG | + | chr1_3:23392669-23392688 | Msa0110530:intron | 20.0% |
| !!! | TTCTTTTCTTTGATTTTGAT+TGG | - | chr1_3:23392926-23392945 | None:intergenic | 20.0% |
| !! | TTTTGACAGAAACTAAACTT+TGG | + | chr1_3:23390665-23390684 | Msa0110530:CDS | 25.0% |
| !!! | TTTTTTTATTACCTGGAGTT+TGG | - | chr1_3:23390852-23390871 | None:intergenic | 25.0% |
| ! | ATTGACAATGAAAGGAATTT+GGG | - | chr1_3:23391024-23391043 | None:intergenic | 25.0% |
| ! | TATTGACAATGAAAGGAATT+TGG | - | chr1_3:23391025-23391044 | None:intergenic | 25.0% |
| !! | TTGAATGAATTGTATTGATG+GGG | + | chr1_3:23391079-23391098 | Msa0110530:intron | 25.0% |
| ! | TATCCATAAATGTATGAATG+TGG | - | chr1_3:23391127-23391146 | None:intergenic | 25.0% |
| ! | GATATAAGATTGAGATTGAT+TGG | - | chr1_3:23391199-23391218 | None:intergenic | 25.0% |
| ! | TTATCTCTTAAACTTTCGAT+TGG | + | chr1_3:23391631-23391650 | Msa0110530:intron | 25.0% |
| ! | ACTTCGATATATGATATTGA+GGG | - | chr1_3:23391882-23391901 | None:intergenic | 25.0% |
| ! | GAACAATAATTTCGTGTATT+CGG | + | chr1_3:23391942-23391961 | Msa0110530:intron | 25.0% |
| ! | AACAATAATTTCGTGTATTC+GGG | + | chr1_3:23391943-23391962 | Msa0110530:intron | 25.0% |
| !! | CAACTAGGACTAAATATTTT+TGG | - | chr1_3:23392180-23392199 | None:intergenic | 25.0% |
| ! | GCAAAACAGAAAAATAAACT+AGG | - | chr1_3:23392259-23392278 | None:intergenic | 25.0% |
| ! | GAAAAATGGTTAGTACTAAA+TGG | - | chr1_3:23392298-23392317 | None:intergenic | 25.0% |
| !! | TATTTTCAGAGTCTTAGTTT+AGG | + | chr1_3:23392378-23392397 | Msa0110530:intron | 25.0% |
| ! | ACTATTAGTCATATAGTCTT+AGG | + | chr1_3:23392565-23392584 | Msa0110530:intron | 25.0% |
| !!! | TTGATCTTCCTCTTTATTTT+GGG | - | chr1_3:23392791-23392810 | None:intergenic | 25.0% |
| ! | AAAAGAATGCTTTCAGAAAA+AGG | + | chr1_3:23392939-23392958 | Msa0110530:CDS | 25.0% |
| ! | AAAGAATGCTTTCAGAAAAA+GGG | + | chr1_3:23392940-23392959 | Msa0110530:CDS | 25.0% |
| !! | TTTTGACAGAAACTAAACTT+TGG | + | chr1_3:23390665-23390684 | Msa0110530:CDS | 25.0% |
| !!! | TTTTTTTATTACCTGGAGTT+TGG | - | chr1_3:23390852-23390871 | None:intergenic | 25.0% |
| ! | ATTGACAATGAAAGGAATTT+GGG | - | chr1_3:23391024-23391043 | None:intergenic | 25.0% |
| ! | TATTGACAATGAAAGGAATT+TGG | - | chr1_3:23391025-23391044 | None:intergenic | 25.0% |
| !! | TTGAATGAATTGTATTGATG+GGG | + | chr1_3:23391079-23391098 | Msa0110530:intron | 25.0% |
| ! | TATCCATAAATGTATGAATG+TGG | - | chr1_3:23391127-23391146 | None:intergenic | 25.0% |
| ! | GATATAAGATTGAGATTGAT+TGG | - | chr1_3:23391199-23391218 | None:intergenic | 25.0% |
| ! | TTATCTCTTAAACTTTCGAT+TGG | + | chr1_3:23391631-23391650 | Msa0110530:intron | 25.0% |
| ! | ACTTCGATATATGATATTGA+GGG | - | chr1_3:23391882-23391901 | None:intergenic | 25.0% |
| ! | GAACAATAATTTCGTGTATT+CGG | + | chr1_3:23391942-23391961 | Msa0110530:intron | 25.0% |
| ! | AACAATAATTTCGTGTATTC+GGG | + | chr1_3:23391943-23391962 | Msa0110530:intron | 25.0% |
| !! | CAACTAGGACTAAATATTTT+TGG | - | chr1_3:23392180-23392199 | None:intergenic | 25.0% |
| ! | GCAAAACAGAAAAATAAACT+AGG | - | chr1_3:23392259-23392278 | None:intergenic | 25.0% |
| ! | GAAAAATGGTTAGTACTAAA+TGG | - | chr1_3:23392298-23392317 | None:intergenic | 25.0% |
| !! | TATTTTCAGAGTCTTAGTTT+AGG | + | chr1_3:23392378-23392397 | Msa0110530:intron | 25.0% |
| ! | ACTATTAGTCATATAGTCTT+AGG | + | chr1_3:23392565-23392584 | Msa0110530:intron | 25.0% |
| !!! | TTGATCTTCCTCTTTATTTT+GGG | - | chr1_3:23392791-23392810 | None:intergenic | 25.0% |
| ! | AAAAGAATGCTTTCAGAAAA+AGG | + | chr1_3:23392939-23392958 | Msa0110530:CDS | 25.0% |
| ! | AAAGAATGCTTTCAGAAAAA+GGG | + | chr1_3:23392940-23392959 | Msa0110530:CDS | 25.0% |
| ! | CATAGTATTGGATTCTCATA+CGG | - | chr1_3:23390700-23390719 | None:intergenic | 30.0% |
| ATGCTCATATTGACAATGAA+AGG | - | chr1_3:23391032-23391051 | None:intergenic | 30.0% | |
| ACTCCACATTCATACATTTA+TGG | + | chr1_3:23391121-23391140 | Msa0110530:intron | 30.0% | |
| ATGCAAATACAACAAGAGAA+TGG | + | chr1_3:23391158-23391177 | Msa0110530:intron | 30.0% | |
| AAATACAACAAGAGAATGGT+TGG | + | chr1_3:23391162-23391181 | Msa0110530:intron | 30.0% | |
| ATTTGATTCTTCACAATCGA+TGG | - | chr1_3:23391333-23391352 | None:intergenic | 30.0% | |
| ATCGATTGTGAAGAATCAAA+TGG | + | chr1_3:23391332-23391351 | Msa0110530:CDS | 30.0% | |
| AACAAAAGCTTCAAAGTCTA+TGG | + | chr1_3:23391364-23391383 | Msa0110530:CDS | 30.0% | |
| ACAAAAGCTTCAAAGTCTAT+GGG | + | chr1_3:23391365-23391384 | Msa0110530:CDS | 30.0% | |
| TGTATATCAAGCAATGAGAT+AGG | + | chr1_3:23391453-23391472 | Msa0110530:intron | 30.0% | |
| TAGCCTAGTATATTGTGAAT+CGG | + | chr1_3:23391521-23391540 | Msa0110530:intron | 30.0% | |
| CTTCGATATATGATATTGAG+GGG | - | chr1_3:23391881-23391900 | None:intergenic | 30.0% | |
| GACTTCGATATATGATATTG+AGG | - | chr1_3:23391883-23391902 | None:intergenic | 30.0% | |
| ATATCGAAGTCTATTCTTGA+TGG | + | chr1_3:23391892-23391911 | Msa0110530:intron | 30.0% | |
| ! | ATGGTTAGGCCATAATATTT+TGG | + | chr1_3:23391911-23391930 | Msa0110530:intron | 30.0% |
| ! | TGGTTAGGCCATAATATTTT+GGG | + | chr1_3:23391912-23391931 | Msa0110530:intron | 30.0% |
| !! | CCATAATATTTTGGGTGTTA+CGG | + | chr1_3:23391920-23391939 | Msa0110530:intron | 30.0% |
| ACAATAATTTCGTGTATTCG+GGG | + | chr1_3:23391944-23391963 | Msa0110530:intron | 30.0% | |
| ! | AGGGTATGTTTATTCTTTTG+TGG | - | chr1_3:23392038-23392057 | None:intergenic | 30.0% |
| ! | TACAATTAGAGAGGTTGATT+AGG | - | chr1_3:23392724-23392743 | None:intergenic | 30.0% |
| ! | CATCTAGTTTACAATTAGAG+AGG | - | chr1_3:23392733-23392752 | None:intergenic | 30.0% |
| GTGTTGTATTAACTTCTTCA+AGG | + | chr1_3:23392763-23392782 | Msa0110530:intron | 30.0% | |
| !! | GTTGATCTTCCTCTTTATTT+TGG | - | chr1_3:23392792-23392811 | None:intergenic | 30.0% |
| AATAAAGAGGAAGATCAACA+TGG | + | chr1_3:23392793-23392812 | Msa0110530:intron | 30.0% | |
| TGAGAACAAAGATAACAACA+AGG | + | chr1_3:23392816-23392835 | Msa0110530:CDS | 30.0% | |
| ATAACAACAAGGAAAACAAC+TGG | + | chr1_3:23392827-23392846 | Msa0110530:CDS | 30.0% | |
| TAACAACAAGGAAAACAACT+GGG | + | chr1_3:23392828-23392847 | Msa0110530:CDS | 30.0% | |
| ! | CATAGTATTGGATTCTCATA+CGG | - | chr1_3:23390700-23390719 | None:intergenic | 30.0% |
| ATGCTCATATTGACAATGAA+AGG | - | chr1_3:23391032-23391051 | None:intergenic | 30.0% | |
| ACTCCACATTCATACATTTA+TGG | + | chr1_3:23391121-23391140 | Msa0110530:intron | 30.0% | |
| ATGCAAATACAACAAGAGAA+TGG | + | chr1_3:23391158-23391177 | Msa0110530:intron | 30.0% | |
| AAATACAACAAGAGAATGGT+TGG | + | chr1_3:23391162-23391181 | Msa0110530:intron | 30.0% | |
| ATTTGATTCTTCACAATCGA+TGG | - | chr1_3:23391333-23391352 | None:intergenic | 30.0% | |
| ATCGATTGTGAAGAATCAAA+TGG | + | chr1_3:23391332-23391351 | Msa0110530:CDS | 30.0% | |
| AACAAAAGCTTCAAAGTCTA+TGG | + | chr1_3:23391364-23391383 | Msa0110530:CDS | 30.0% | |
| ACAAAAGCTTCAAAGTCTAT+GGG | + | chr1_3:23391365-23391384 | Msa0110530:CDS | 30.0% | |
| TGTATATCAAGCAATGAGAT+AGG | + | chr1_3:23391453-23391472 | Msa0110530:intron | 30.0% | |
| TAGCCTAGTATATTGTGAAT+CGG | + | chr1_3:23391521-23391540 | Msa0110530:intron | 30.0% | |
| CTTCGATATATGATATTGAG+GGG | - | chr1_3:23391881-23391900 | None:intergenic | 30.0% | |
| GACTTCGATATATGATATTG+AGG | - | chr1_3:23391883-23391902 | None:intergenic | 30.0% | |
| ATATCGAAGTCTATTCTTGA+TGG | + | chr1_3:23391892-23391911 | Msa0110530:intron | 30.0% | |
| ! | ATGGTTAGGCCATAATATTT+TGG | + | chr1_3:23391911-23391930 | Msa0110530:intron | 30.0% |
| ! | TGGTTAGGCCATAATATTTT+GGG | + | chr1_3:23391912-23391931 | Msa0110530:intron | 30.0% |
| !! | CCATAATATTTTGGGTGTTA+CGG | + | chr1_3:23391920-23391939 | Msa0110530:intron | 30.0% |
| ACAATAATTTCGTGTATTCG+GGG | + | chr1_3:23391944-23391963 | Msa0110530:intron | 30.0% | |
| ! | AGGGTATGTTTATTCTTTTG+TGG | - | chr1_3:23392038-23392057 | None:intergenic | 30.0% |
| ! | TACAATTAGAGAGGTTGATT+AGG | - | chr1_3:23392724-23392743 | None:intergenic | 30.0% |
| ! | CATCTAGTTTACAATTAGAG+AGG | - | chr1_3:23392733-23392752 | None:intergenic | 30.0% |
| GTGTTGTATTAACTTCTTCA+AGG | + | chr1_3:23392763-23392782 | Msa0110530:intron | 30.0% | |
| !! | GTTGATCTTCCTCTTTATTT+TGG | - | chr1_3:23392792-23392811 | None:intergenic | 30.0% |
| AATAAAGAGGAAGATCAACA+TGG | + | chr1_3:23392793-23392812 | Msa0110530:intron | 30.0% | |
| TGAGAACAAAGATAACAACA+AGG | + | chr1_3:23392816-23392835 | Msa0110530:CDS | 30.0% | |
| ATAACAACAAGGAAAACAAC+TGG | + | chr1_3:23392827-23392846 | Msa0110530:CDS | 30.0% | |
| TAACAACAAGGAAAACAACT+GGG | + | chr1_3:23392828-23392847 | Msa0110530:CDS | 30.0% | |
| GAAACTAAACTTTGGCGTAA+AGG | + | chr1_3:23390673-23390692 | Msa0110530:CDS | 35.0% | |
| CCACAAGCATTACATAGTAT+TGG | - | chr1_3:23390712-23390731 | None:intergenic | 35.0% | |
| CCAATACTATGTAATGCTTG+TGG | + | chr1_3:23390709-23390728 | Msa0110530:CDS | 35.0% | |
| CTTCGGAAGATAGTTATCAA+GGG | - | chr1_3:23390758-23390777 | None:intergenic | 35.0% | |
| TCTTCGGAAGATAGTTATCA+AGG | - | chr1_3:23390759-23390778 | None:intergenic | 35.0% | |
| !! | GTCTGATAACTGATTTTGCT+GGG | - | chr1_3:23390785-23390804 | None:intergenic | 35.0% |
| ! | GAATTGTATTGATGGGGATT+AGG | + | chr1_3:23391085-23391104 | Msa0110530:intron | 35.0% |
| TCATACACGGTACATATCAA+TGG | - | chr1_3:23391271-23391290 | None:intergenic | 35.0% | |
| GATTGTGAAGAATCAAATGG+AGG | + | chr1_3:23391335-23391354 | Msa0110530:CDS | 35.0% | |
| !! | ATGCCGATTCACAATATACT+AGG | - | chr1_3:23391527-23391546 | None:intergenic | 35.0% |
| !! | AATGATTTTGAAGGAGAGAG+TGG | + | chr1_3:23391695-23391714 | Msa0110530:intron | 35.0% |
| ! | GAAGTCTATTCTTGATGGTT+AGG | + | chr1_3:23391897-23391916 | Msa0110530:intron | 35.0% |
| CCGTAACACCCAAAATATTA+TGG | - | chr1_3:23391923-23391942 | None:intergenic | 35.0% | |
| ! | GATGCGTTGCATTTTGAATA+GGG | - | chr1_3:23391999-23392018 | None:intergenic | 35.0% |
| ! | TGATGCGTTGCATTTTGAAT+AGG | - | chr1_3:23392000-23392019 | None:intergenic | 35.0% |
| AATAAACATACCCTAGAGAC+TGG | + | chr1_3:23392044-23392063 | Msa0110530:intron | 35.0% | |
| ATAAACATACCCTAGAGACT+GGG | + | chr1_3:23392045-23392064 | Msa0110530:intron | 35.0% | |
| TCAATAGAAAGGCAAGCAAT+AGG | - | chr1_3:23392099-23392118 | None:intergenic | 35.0% | |
| ! | AATGAGGCATCTCAATAGAA+AGG | - | chr1_3:23392110-23392129 | None:intergenic | 35.0% |
| ! | TCAAGGTACCCAAAATAAAG+AGG | + | chr1_3:23392780-23392799 | Msa0110530:intron | 35.0% |
| AACAACAAGGAAAACAACTG+GGG | + | chr1_3:23392829-23392848 | Msa0110530:CDS | 35.0% | |
| ACTTTCTTCAATCCTCCAAT+TGG | - | chr1_3:23392860-23392879 | None:intergenic | 35.0% | |
| ATTGAAGAAAGTTCCACAAG+AGG | + | chr1_3:23392868-23392887 | Msa0110530:CDS | 35.0% | |
| GAAACTAAACTTTGGCGTAA+AGG | + | chr1_3:23390673-23390692 | Msa0110530:CDS | 35.0% | |
| CCACAAGCATTACATAGTAT+TGG | - | chr1_3:23390712-23390731 | None:intergenic | 35.0% | |
| CCAATACTATGTAATGCTTG+TGG | + | chr1_3:23390709-23390728 | Msa0110530:CDS | 35.0% | |
| CTTCGGAAGATAGTTATCAA+GGG | - | chr1_3:23390758-23390777 | None:intergenic | 35.0% | |
| TCTTCGGAAGATAGTTATCA+AGG | - | chr1_3:23390759-23390778 | None:intergenic | 35.0% | |
| !! | GTCTGATAACTGATTTTGCT+GGG | - | chr1_3:23390785-23390804 | None:intergenic | 35.0% |
| ! | GAATTGTATTGATGGGGATT+AGG | + | chr1_3:23391085-23391104 | Msa0110530:intron | 35.0% |
| TCATACACGGTACATATCAA+TGG | - | chr1_3:23391271-23391290 | None:intergenic | 35.0% | |
| GATTGTGAAGAATCAAATGG+AGG | + | chr1_3:23391335-23391354 | Msa0110530:CDS | 35.0% | |
| !! | ATGCCGATTCACAATATACT+AGG | - | chr1_3:23391527-23391546 | None:intergenic | 35.0% |
| !! | AATGATTTTGAAGGAGAGAG+TGG | + | chr1_3:23391695-23391714 | Msa0110530:intron | 35.0% |
| ! | GAAGTCTATTCTTGATGGTT+AGG | + | chr1_3:23391897-23391916 | Msa0110530:intron | 35.0% |
| CCGTAACACCCAAAATATTA+TGG | - | chr1_3:23391923-23391942 | None:intergenic | 35.0% | |
| ! | GATGCGTTGCATTTTGAATA+GGG | - | chr1_3:23391999-23392018 | None:intergenic | 35.0% |
| ! | TGATGCGTTGCATTTTGAAT+AGG | - | chr1_3:23392000-23392019 | None:intergenic | 35.0% |
| AATAAACATACCCTAGAGAC+TGG | + | chr1_3:23392044-23392063 | Msa0110530:intron | 35.0% | |
| ATAAACATACCCTAGAGACT+GGG | + | chr1_3:23392045-23392064 | Msa0110530:intron | 35.0% | |
| TCAATAGAAAGGCAAGCAAT+AGG | - | chr1_3:23392099-23392118 | None:intergenic | 35.0% | |
| ! | AATGAGGCATCTCAATAGAA+AGG | - | chr1_3:23392110-23392129 | None:intergenic | 35.0% |
| ! | TCAAGGTACCCAAAATAAAG+AGG | + | chr1_3:23392780-23392799 | Msa0110530:intron | 35.0% |
| AACAACAAGGAAAACAACTG+GGG | + | chr1_3:23392829-23392848 | Msa0110530:CDS | 35.0% | |
| ACTTTCTTCAATCCTCCAAT+TGG | - | chr1_3:23392860-23392879 | None:intergenic | 35.0% | |
| ATTGAAGAAAGTTCCACAAG+AGG | + | chr1_3:23392868-23392887 | Msa0110530:CDS | 35.0% | |
| ! | TGCTTGTGGACTACATTTCA+AGG | + | chr1_3:23390723-23390742 | Msa0110530:CDS | 40.0% |
| GGACTACATTTCAAGGCTAA+AGG | + | chr1_3:23390730-23390749 | Msa0110530:CDS | 40.0% | |
| ! | TGATTTTGCTGGGATGTCTT+CGG | - | chr1_3:23390775-23390794 | None:intergenic | 40.0% |
| !! | GGTCTGATAACTGATTTTGC+TGG | - | chr1_3:23390786-23390805 | None:intergenic | 40.0% |
| ATCAGACCTTGACGTTGAAA+AGG | + | chr1_3:23390798-23390817 | Msa0110530:CDS | 40.0% | |
| ! | CAGATTCCTTTTCAACGTCA+AGG | - | chr1_3:23390807-23390826 | None:intergenic | 40.0% |
| !! | TGGAGTTTGGTTTGAAAGCT+CGG | - | chr1_3:23390839-23390858 | None:intergenic | 40.0% |
| AGCATTCATTTGCGTAGACA+CGG | + | chr1_3:23391047-23391066 | Msa0110530:intron | 40.0% | |
| ATTTGCGTAGACACGGTATT+AGG | + | chr1_3:23391054-23391073 | Msa0110530:intron | 40.0% | |
| TCAAGCAATGAGATAGGCAT+TGG | + | chr1_3:23391459-23391478 | Msa0110530:intron | 40.0% | |
| TAAACATACCCTAGAGACTG+GGG | + | chr1_3:23392046-23392065 | Msa0110530:intron | 40.0% | |
| AGATGGAGTCTGTTAAGTCT+AGG | + | chr1_3:23392631-23392650 | Msa0110530:intron | 40.0% | |
| ACAACTGGGGAAAAACCAAT+TGG | + | chr1_3:23392842-23392861 | Msa0110530:CDS | 40.0% | |
| CAAGACTTATGCATGAGAGT+AGG | - | chr1_3:23393004-23393023 | None:intergenic | 40.0% | |
| CTACTCTCATGCATAAGTCT+TGG | + | chr1_3:23393002-23393021 | Msa0110530:CDS | 40.0% | |
| ! | CAGATGCGAGTTATTTCGAA+AGG | - | chr1_3:23393034-23393053 | None:intergenic | 40.0% |
| ! | TGCTTGTGGACTACATTTCA+AGG | + | chr1_3:23390723-23390742 | Msa0110530:CDS | 40.0% |
| GGACTACATTTCAAGGCTAA+AGG | + | chr1_3:23390730-23390749 | Msa0110530:CDS | 40.0% | |
| ! | TGATTTTGCTGGGATGTCTT+CGG | - | chr1_3:23390775-23390794 | None:intergenic | 40.0% |
| !! | GGTCTGATAACTGATTTTGC+TGG | - | chr1_3:23390786-23390805 | None:intergenic | 40.0% |
| ATCAGACCTTGACGTTGAAA+AGG | + | chr1_3:23390798-23390817 | Msa0110530:CDS | 40.0% | |
| ! | CAGATTCCTTTTCAACGTCA+AGG | - | chr1_3:23390807-23390826 | None:intergenic | 40.0% |
| !! | TGGAGTTTGGTTTGAAAGCT+CGG | - | chr1_3:23390839-23390858 | None:intergenic | 40.0% |
| AGCATTCATTTGCGTAGACA+CGG | + | chr1_3:23391047-23391066 | Msa0110530:intron | 40.0% | |
| ATTTGCGTAGACACGGTATT+AGG | + | chr1_3:23391054-23391073 | Msa0110530:intron | 40.0% | |
| TCAAGCAATGAGATAGGCAT+TGG | + | chr1_3:23391459-23391478 | Msa0110530:intron | 40.0% | |
| TAAACATACCCTAGAGACTG+GGG | + | chr1_3:23392046-23392065 | Msa0110530:intron | 40.0% | |
| AGATGGAGTCTGTTAAGTCT+AGG | + | chr1_3:23392631-23392650 | Msa0110530:intron | 40.0% | |
| ACAACTGGGGAAAAACCAAT+TGG | + | chr1_3:23392842-23392861 | Msa0110530:CDS | 40.0% | |
| CAAGACTTATGCATGAGAGT+AGG | - | chr1_3:23393004-23393023 | None:intergenic | 40.0% | |
| CTACTCTCATGCATAAGTCT+TGG | + | chr1_3:23393002-23393021 | Msa0110530:CDS | 40.0% | |
| ! | CAGATGCGAGTTATTTCGAA+AGG | - | chr1_3:23393034-23393053 | None:intergenic | 40.0% |
| !! | GGAGTTTGGTTTGAAAGCTC+GGG | - | chr1_3:23390838-23390857 | None:intergenic | 45.0% |
| GAGCTTTCAAACCAAACTCC+AGG | + | chr1_3:23390838-23390857 | Msa0110530:CDS | 45.0% | |
| AATTTCGTGTATTCGGGGAC+TGG | + | chr1_3:23391949-23391968 | Msa0110530:intron | 45.0% | |
| ! | GCGTTGCATTTTGAATAGGG+AGG | - | chr1_3:23391996-23392015 | None:intergenic | 45.0% |
| !! | GAGTGGGGTTAGTTCCTAAA+TGG | - | chr1_3:23392337-23392356 | None:intergenic | 45.0% |
| ACTGGGGAAAAACCAATTGG+AGG | + | chr1_3:23392845-23392864 | Msa0110530:CDS | 45.0% | |
| !! | CATCCATGAAGCTGACTTGT+CGG | - | chr1_3:23392898-23392917 | None:intergenic | 45.0% |
| ACAAGTCAGCTTCATGGATG+AGG | + | chr1_3:23392898-23392917 | Msa0110530:CDS | 45.0% | |
| GACTTATGCATGAGAGTAGG+TGG | - | chr1_3:23393001-23393020 | None:intergenic | 45.0% | |
| !! | GGAGTTTGGTTTGAAAGCTC+GGG | - | chr1_3:23390838-23390857 | None:intergenic | 45.0% |
| GAGCTTTCAAACCAAACTCC+AGG | + | chr1_3:23390838-23390857 | Msa0110530:CDS | 45.0% | |
| AATTTCGTGTATTCGGGGAC+TGG | + | chr1_3:23391949-23391968 | Msa0110530:intron | 45.0% | |
| ! | GCGTTGCATTTTGAATAGGG+AGG | - | chr1_3:23391996-23392015 | None:intergenic | 45.0% |
| !! | GAGTGGGGTTAGTTCCTAAA+TGG | - | chr1_3:23392337-23392356 | None:intergenic | 45.0% |
| ACTGGGGAAAAACCAATTGG+AGG | + | chr1_3:23392845-23392864 | Msa0110530:CDS | 45.0% | |
| !! | CATCCATGAAGCTGACTTGT+CGG | - | chr1_3:23392898-23392917 | None:intergenic | 45.0% |
| ACAAGTCAGCTTCATGGATG+AGG | + | chr1_3:23392898-23392917 | Msa0110530:CDS | 45.0% | |
| GACTTATGCATGAGAGTAGG+TGG | - | chr1_3:23393001-23393020 | None:intergenic | 45.0% | |
| !! | TAAAAATTAATGAAATATTA+TGG | - | chr1_3:23391814-23391833 | None:intergenic | 5.0% |
| !!! | TTTTTTATTTTTTTAAATTG+AGG | - | chr1_3:23391854-23391873 | None:intergenic | 5.0% |
| !! | TAAAAATTAATGAAATATTA+TGG | - | chr1_3:23391814-23391833 | None:intergenic | 5.0% |
| !!! | TTTTTTATTTTTTTAAATTG+AGG | - | chr1_3:23391854-23391873 | None:intergenic | 5.0% |
| TAGGGAGGATGATGAAGTCG+AGG | - | chr1_3:23391981-23392000 | None:intergenic | 50.0% | |
| ATCCTCAACCCCAGTCTCTA+GGG | - | chr1_3:23392057-23392076 | None:intergenic | 50.0% | |
| TATCCTCAACCCCAGTCTCT+AGG | - | chr1_3:23392058-23392077 | None:intergenic | 50.0% | |
| GCAAGCAATAGGAGCCTCAA+GGG | - | chr1_3:23392088-23392107 | None:intergenic | 50.0% | |
| ACTTGTCGGATCTCCTCTTG+TGG | - | chr1_3:23392884-23392903 | None:intergenic | 50.0% | |
| GATCCGACAAGTCAGCTTCA+TGG | + | chr1_3:23392892-23392911 | Msa0110530:CDS | 50.0% | |
| TAGGGAGGATGATGAAGTCG+AGG | - | chr1_3:23391981-23392000 | None:intergenic | 50.0% | |
| ATCCTCAACCCCAGTCTCTA+GGG | - | chr1_3:23392057-23392076 | None:intergenic | 50.0% | |
| TATCCTCAACCCCAGTCTCT+AGG | - | chr1_3:23392058-23392077 | None:intergenic | 50.0% | |
| GCAAGCAATAGGAGCCTCAA+GGG | - | chr1_3:23392088-23392107 | None:intergenic | 50.0% | |
| ACTTGTCGGATCTCCTCTTG+TGG | - | chr1_3:23392884-23392903 | None:intergenic | 50.0% | |
| GATCCGACAAGTCAGCTTCA+TGG | + | chr1_3:23392892-23392911 | Msa0110530:CDS | 50.0% | |
| GGAGGATGATGAAGTCGAGG+AGG | - | chr1_3:23391978-23391997 | None:intergenic | 55.0% | |
| TACCCTAGAGACTGGGGTTG+AGG | + | chr1_3:23392052-23392071 | Msa0110530:intron | 55.0% | |
| GAGGATAGACTCCTCCCTTG+AGG | + | chr1_3:23392071-23392090 | Msa0110530:intron | 55.0% | |
| AGCAATAGGAGCCTCAAGGG+AGG | - | chr1_3:23392085-23392104 | None:intergenic | 55.0% | |
| GGCAAGCAATAGGAGCCTCA+AGG | - | chr1_3:23392089-23392108 | None:intergenic | 55.0% | |
| GGAGGATGATGAAGTCGAGG+AGG | - | chr1_3:23391978-23391997 | None:intergenic | 55.0% | |
| TACCCTAGAGACTGGGGTTG+AGG | + | chr1_3:23392052-23392071 | Msa0110530:intron | 55.0% | |
| GAGGATAGACTCCTCCCTTG+AGG | + | chr1_3:23392071-23392090 | Msa0110530:intron | 55.0% | |
| AGCAATAGGAGCCTCAAGGG+AGG | - | chr1_3:23392085-23392104 | None:intergenic | 55.0% | |
| GGCAAGCAATAGGAGCCTCA+AGG | - | chr1_3:23392089-23392108 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 23390661 | 23393072 | 23390661 | ID=Msa0110530;Name=Msa0110530 |
| chr1_3 | mRNA | 23390661 | 23393072 | 23390661 | ID=Msa0110530-mRNA-1;Parent=Msa0110530;Name=Msa0110530-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0|0|1|0.5|0.33|3|0|193 |
| chr1_3 | exon | 23390661 | 23390859 | 23390661 | ID=Msa0110530-mRNA-1:exon:8215;Parent=Msa0110530-mRNA-1 |
| chr1_3 | exon | 23391322 | 23391433 | 23391322 | ID=Msa0110530-mRNA-1:exon:8216;Parent=Msa0110530-mRNA-1 |
| chr1_3 | exon | 23392802 | 23393072 | 23392802 | ID=Msa0110530-mRNA-1:exon:8217;Parent=Msa0110530-mRNA-1 |
| chr1_3 | CDS | 23390661 | 23390859 | 23390661 | ID=Msa0110530-mRNA-1:cds;Parent=Msa0110530-mRNA-1 |
| chr1_3 | CDS | 23391322 | 23391433 | 23391322 | ID=Msa0110530-mRNA-1:cds;Parent=Msa0110530-mRNA-1 |
| chr1_3 | CDS | 23392802 | 23393072 | 23392802 | ID=Msa0110530-mRNA-1:cds;Parent=Msa0110530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
