Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110550 | AES60398.2 | 85.827 | 127 | 18 | 0 | 1 | 127 | 1 | 127 | 3.12e-67 | 212 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110550 | G7I6L4 | 85.827 | 127 | 18 | 0 | 1 | 127 | 1 | 127 | 1.49e-67 | 212 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0110550 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110550 | MtrunA17_Chr7g0235271 | 80.000 | 60 | 12 | 0 | 140 | 199 | 1 | 60 | 8.36e-29 | 103 |
| Msa0110550 | MtrunA17_Chr8g0362161 | 76.667 | 60 | 14 | 0 | 140 | 199 | 1 | 60 | 3.19e-28 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 33 sgRNAs with CRISPR-Local
Find 624 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAAAAGCTTCAAAGTCTA+TGG | 0.184389 | 1_3:+23404677 | Msa0110550:CDS |
| CGCTTGTGGACTACATTTCA+AGG | 0.405648 | 1_3:+23404080 | Msa0110550:CDS |
| CATCCATGAAGCTGACTTGT+CGG | 0.439456 | 1_3:-23406224 | None:intergenic |
| TGGAGATTGGTTTGAAAGCT+CGG | 0.447768 | 1_3:-23404193 | None:intergenic |
| CCACAAGCGTTACATAGTAT+TGG | 0.448818 | 1_3:-23404066 | None:intergenic |
| GATCCGACAAGTCAGCTTCA+TGG | 0.456202 | 1_3:+23406221 | Msa0110550:CDS |
| GAAACTAAACTTTGGCGTAA+AGG | 0.456777 | 1_3:+23404030 | Msa0110550:CDS |
| TGTATACCAAGCAATGAGAT+AGG | 0.462534 | 1_3:+23404766 | Msa0110550:CDS |
| ATCAGACCTTGACGTTGAAA+AGG | 0.465983 | 1_3:+23404155 | Msa0110550:CDS |
| GAACAATCGTGTTGTGATCA+AGG | 0.471748 | 1_3:+23406386 | Msa0110550:CDS |
| ACAAGAATGCTTTCAGAAGA+AGG | 0.473328 | 1_3:+23406268 | Msa0110550:CDS |
| GGACTACATTTCAAGGCTAA+AGG | 0.474721 | 1_3:+23404087 | Msa0110550:CDS |
| TCTTCGGAAGATAGTTATCA+AGG | 0.478433 | 1_3:-23404113 | None:intergenic |
| CATAGTATTGGCTTCTCATA+CGG | 0.490978 | 1_3:-23404054 | None:intergenic |
| ATCGATTGTGAAGAATCAAA+TGG | 0.491491 | 1_3:+23404645 | Msa0110550:CDS |
| GGAGATTGGTTTGAAAGCTC+GGG | 0.493147 | 1_3:-23404192 | None:intergenic |
| CCAAGCAATGAGATAGGCAT+TGG | 0.496933 | 1_3:+23404772 | Msa0110550:CDS |
| ATTTGATTCTTCACAATCGA+TGG | 0.523804 | 1_3:-23404643 | None:intergenic |
| CTACTCTCATGCATAAGTCT+TGG | 0.525421 | 1_3:+23406331 | Msa0110550:CDS |
| ACTTGTCGGATCTCCTCTTG+TGG | 0.542057 | 1_3:-23406210 | None:intergenic |
| ACAAGTCAGCTTCATGGATG+AGG | 0.543906 | 1_3:+23406227 | Msa0110550:CDS |
| TGATCAAGGATCAAACTAGA+TGG | 0.545974 | 1_3:+23406400 | Msa0110550:CDS |
| ACAAAAGCTTCAAAGTCTAT+GGG | 0.556384 | 1_3:+23404678 | Msa0110550:CDS |
| CAAGAATGCTTTCAGAAGAA+GGG | 0.561983 | 1_3:+23406269 | Msa0110550:CDS |
| CAGATGCGAGTTATTTCGAA+AGG | 0.562922 | 1_3:-23406360 | None:intergenic |
| CCAATGCCTATCTCATTGCT+TGG | 0.566560 | 1_3:-23404772 | None:intergenic |
| GAGCTTTCAAACCAATCTCC+AGG | 0.568278 | 1_3:+23404195 | Msa0110550:CDS |
| GACTTATGCATGAGAGTAGG+TGG | 0.580845 | 1_3:-23406327 | None:intergenic |
| ATTGAAGAAAGTTCCACAAG+AGG | 0.598488 | 1_3:+23406197 | Msa0110550:intron |
| CCAATACTATGTAACGCTTG+TGG | 0.608782 | 1_3:+23404066 | Msa0110550:CDS |
| CAAGACTTATGCATGAGAGT+AGG | 0.615815 | 1_3:-23406330 | None:intergenic |
| CTTCGGAAGATAGTTATCAA+GGG | 0.629882 | 1_3:-23404112 | None:intergenic |
| GATTGTGAAGAATCAAATGG+AGG | 0.680011 | 1_3:+23404648 | Msa0110550:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTTATATTTTTAAAAA+TGG | - | chr1_3:23412186-23412205 | None:intergenic | 0.0% |
| !!! | ATTTATATTTGTTGAAAAAT+GGG | - | chr1_3:23404256-23404275 | None:intergenic | 10.0% |
| !!! | TTTTAATTTTTTTTGTAGAA+AGG | + | chr1_3:23404617-23404636 | Msa0110550:intron | 10.0% |
| !! | ATTAAATATATACCAAAATA+TGG | - | chr1_3:23405068-23405087 | None:intergenic | 10.0% |
| !! | TAAAAGTTAATGAAATATTA+TGG | - | chr1_3:23405148-23405167 | None:intergenic | 10.0% |
| !! | AATTTGTATTAGATAATATT+TGG | - | chr1_3:23406771-23406790 | None:intergenic | 10.0% |
| !! | ATAATAAAAAAATTAATGCA+AGG | + | chr1_3:23412015-23412034 | Msa0110550:intron | 10.0% |
| !! | TAATAAAAAAATTAATGCAA+GGG | + | chr1_3:23412016-23412035 | Msa0110550:intron | 10.0% |
| !!! | TCAATATTATATTACATTTT+TGG | - | chr1_3:23412043-23412062 | None:intergenic | 10.0% |
| !!! | AATAAATCTATGTTTTTTTT+GGG | - | chr1_3:23413052-23413071 | None:intergenic | 10.0% |
| !! | TATACTAAAATTTAACAATT+AGG | - | chr1_3:23413313-23413332 | None:intergenic | 10.0% |
| !!! | TTTATATTTGTTGAAAAATG+GGG | - | chr1_3:23404255-23404274 | None:intergenic | 15.0% |
| !!! | GATTTATATTTGTTGAAAAA+TGG | - | chr1_3:23404257-23404276 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAATACTCAACT+AGG | - | chr1_3:23405529-23405548 | None:intergenic | 15.0% |
| !! | AAACAAAAAGAAAAGAAAAA+TGG | - | chr1_3:23405648-23405667 | None:intergenic | 15.0% |
| !! | TAAAAAGAAAATAAATGAGT+GGG | - | chr1_3:23405689-23405708 | None:intergenic | 15.0% |
| !! | ATAAAAAGAAAATAAATGAG+TGG | - | chr1_3:23405690-23405709 | None:intergenic | 15.0% |
| !! | ATTCTAAATGCAAAATTAAA+TGG | - | chr1_3:23405856-23405875 | None:intergenic | 15.0% |
| !!! | TTAATTTTGCATTTAGAATT+AGG | + | chr1_3:23405857-23405876 | Msa0110550:intron | 15.0% |
| !! | GGTTTATTAGTAATAATATT+AGG | + | chr1_3:23405914-23405933 | Msa0110550:intron | 15.0% |
| !! | TTCAATTTCGTTATATAATT+AGG | + | chr1_3:23406902-23406921 | Msa0110550:intron | 15.0% |
| !! | TTTATTAGAACAATTCAATT+AGG | + | chr1_3:23407273-23407292 | Msa0110550:intron | 15.0% |
| !! | TAATTAAAACATACATGAAT+TGG | + | chr1_3:23407533-23407552 | Msa0110550:intron | 15.0% |
| !! | TAAATTCAACAAATTAAAAC+AGG | + | chr1_3:23408724-23408743 | Msa0110550:intron | 15.0% |
| !! | AAATTCAACAAATTAAAACA+GGG | + | chr1_3:23408725-23408744 | Msa0110550:intron | 15.0% |
| !! | ATTAGGTTTACATAAAATTA+GGG | - | chr1_3:23410494-23410513 | None:intergenic | 15.0% |
| !! | AATTAGGTTTACATAAAATT+AGG | - | chr1_3:23410495-23410514 | None:intergenic | 15.0% |
| !!! | TTTGTTATTGATTATAAGAA+CGG | - | chr1_3:23410532-23410551 | None:intergenic | 15.0% |
| !!! | AAAAGATGAAGTTTTAATAT+TGG | + | chr1_3:23410624-23410643 | Msa0110550:intron | 15.0% |
| !! | AACGATTTAATAAAAGATAA+GGG | - | chr1_3:23411639-23411658 | None:intergenic | 15.0% |
| !! | TAACGATTTAATAAAAGATA+AGG | - | chr1_3:23411640-23411659 | None:intergenic | 15.0% |
| !! | AAATATTACAATAAAAAGGT+TGG | - | chr1_3:23412162-23412181 | None:intergenic | 15.0% |
| !! | TGGAAAATATTACAATAAAA+AGG | - | chr1_3:23412166-23412185 | None:intergenic | 15.0% |
| !!! | CAATAAATCTATGTTTTTTT+TGG | - | chr1_3:23413053-23413072 | None:intergenic | 15.0% |
| !! | CAAAAAAAACATAGATTTAT+TGG | + | chr1_3:23413051-23413070 | Msa0110550:intron | 15.0% |
| !! | AATATTATTATTTGTGTATG+TGG | - | chr1_3:23413154-23413173 | None:intergenic | 15.0% |
| !!! | TTTTTTACTATTTCATGTAT+TGG | + | chr1_3:23413265-23413284 | Msa0110550:intron | 15.0% |
| !!! | TTTTTCATAAAATTGTCATT+TGG | + | chr1_3:23413400-23413419 | Msa0110550:intron | 15.0% |
| !!! | TGAAACTGTTTTTTTTATAA+AGG | + | chr1_3:23413757-23413776 | Msa0110550:intron | 15.0% |
| !! | TTCGTTATTATTAGATAAAA+TGG | + | chr1_3:23413801-23413820 | Msa0110550:intron | 15.0% |
| !! | AATTTGATTGTATCTATTTA+TGG | - | chr1_3:23413856-23413875 | None:intergenic | 15.0% |
| !!! | TTATTGCATTTTTTATTACC+TGG | - | chr1_3:23404216-23404235 | None:intergenic | 20.0% |
| !!! | ATTGTAAGAATTTTCTTAAG+TGG | + | chr1_3:23404310-23404329 | Msa0110550:intron | 20.0% |
| !! | AACACTACTATTTATATATG+AGG | + | chr1_3:23404361-23404380 | Msa0110550:intron | 20.0% |
| !!! | TTTTGAATGAATTGTATTGA+TGG | + | chr1_3:23404454-23404473 | Msa0110550:intron | 20.0% |
| !!! | TTTGAATGAATTGTATTGAT+GGG | + | chr1_3:23404455-23404474 | Msa0110550:intron | 20.0% |
| !! | TTATATGTATACATCATACA+CGG | - | chr1_3:23404595-23404614 | None:intergenic | 20.0% |
| !!! | ATTTTGAGAAATGATTTTGA+AGG | + | chr1_3:23405020-23405039 | Msa0110550:intron | 20.0% |
| !!! | TTCTTTTTGTTTTTCCATTT+AGG | + | chr1_3:23405656-23405675 | Msa0110550:intron | 20.0% |
| !! | AAAAAGAAAATAAATGAGTG+GGG | - | chr1_3:23405688-23405707 | None:intergenic | 20.0% |
| !! | ACTATAGTAGTTAATTTAGA+TGG | + | chr1_3:23405942-23405961 | Msa0110550:intron | 20.0% |
| !! | AACTAAGATCAATTATCATT+AGG | + | chr1_3:23405997-23406016 | Msa0110550:intron | 20.0% |
| !! | TTGAATTGTTCTAATAAACA+GGG | - | chr1_3:23407271-23407290 | None:intergenic | 20.0% |
| !! | ATTGAATTGTTCTAATAAAC+AGG | - | chr1_3:23407272-23407291 | None:intergenic | 20.0% |
| !!! | AGAGAACATTTTTAACATTT+AGG | + | chr1_3:23408354-23408373 | Msa0110550:intron | 20.0% |
| !!! | GAGAACATTTTTAACATTTA+GGG | + | chr1_3:23408355-23408374 | Msa0110550:intron | 20.0% |
| !!! | AGAACATTTTTAACATTTAG+GGG | + | chr1_3:23408356-23408375 | Msa0110550:intron | 20.0% |
| !! | AGAAATTGAATGATGAAAAA+GGG | - | chr1_3:23408421-23408440 | None:intergenic | 20.0% |
| !! | AAGAAATTGAATGATGAAAA+AGG | - | chr1_3:23408422-23408441 | None:intergenic | 20.0% |
| !! | ATGCAATATATACACAAAAA+TGG | - | chr1_3:23408466-23408485 | None:intergenic | 20.0% |
| !! | TTAACTCAGAAATTCATTAA+GGG | + | chr1_3:23408611-23408630 | Msa0110550:intron | 20.0% |
| !!! | ATTGTTTCTCTATTATTGAT+TGG | - | chr1_3:23408811-23408830 | None:intergenic | 20.0% |
| !! | GTAAATTGAAAAACAAGATT+TGG | + | chr1_3:23408877-23408896 | Msa0110550:intron | 20.0% |
| !! | AATAAAAATAAAAGAGCCTT+GGG | - | chr1_3:23410909-23410928 | None:intergenic | 20.0% |
| !! | TAATAAAAATAAAAGAGCCT+TGG | - | chr1_3:23410910-23410929 | None:intergenic | 20.0% |
| !! | ATATTCAACAATATAAACAG+AGG | + | chr1_3:23411518-23411537 | Msa0110550:intron | 20.0% |
| !!! | CTACTTATCATTTTATTACT+TGG | + | chr1_3:23411723-23411742 | Msa0110550:intron | 20.0% |
| !! | AAAAAAATGATGTACGAATT+AGG | - | chr1_3:23411769-23411788 | None:intergenic | 20.0% |
| !!! | TAGCTTTTAAAAAGTTGTAA+TGG | - | chr1_3:23411867-23411886 | None:intergenic | 20.0% |
| !! | AAGTAAAAATCTGTAACTTA+AGG | + | chr1_3:23411949-23411968 | Msa0110550:intron | 20.0% |
| !! | AGTAAAAATCTGTAACTTAA+GGG | + | chr1_3:23411950-23411969 | Msa0110550:intron | 20.0% |
| !! | TTATTATACTTTGTTCACTT+AGG | - | chr1_3:23412002-23412021 | None:intergenic | 20.0% |
| !!! | TCAACATTTAGATTTTAGAT+AGG | + | chr1_3:23412272-23412291 | Msa0110550:intron | 20.0% |
| !!! | CAACATTTAGATTTTAGATA+GGG | + | chr1_3:23412273-23412292 | Msa0110550:intron | 20.0% |
| !!! | AACATTTAGATTTTAGATAG+GGG | + | chr1_3:23412274-23412293 | Msa0110550:intron | 20.0% |
| !! | AAAAAACTCAAGATAAGATA+TGG | - | chr1_3:23412927-23412946 | None:intergenic | 20.0% |
| !!! | TTGGGTTTTATTTTTTAGAT+CGG | - | chr1_3:23413034-23413053 | None:intergenic | 20.0% |
| !! | ATAGATTTATTGGATCTATT+TGG | + | chr1_3:23413061-23413080 | Msa0110550:intron | 20.0% |
| !! | CTAAAATTTAACAATTAGGA+AGG | - | chr1_3:23413309-23413328 | None:intergenic | 20.0% |
| !!! | TTTTCAAATGTCAACATAAT+TGG | + | chr1_3:23413654-23413673 | Msa0110550:intron | 20.0% |
| !! | TTTCAAATGTCAACATAATT+GGG | + | chr1_3:23413655-23413674 | Msa0110550:intron | 20.0% |
| !!! | TTTTCCTTAACTAATAAGAT+TGG | + | chr1_3:23413718-23413737 | Msa0110550:intron | 20.0% |
| !! | AATACCAATCTTATTAGTTA+AGG | - | chr1_3:23413725-23413744 | None:intergenic | 20.0% |
| !! | TTTTGACAGAAACTAAACTT+TGG | + | chr1_3:23404022-23404041 | Msa0110550:CDS | 25.0% |
| !!! | ATTTTTTATTACCTGGAGAT+TGG | - | chr1_3:23404209-23404228 | None:intergenic | 25.0% |
| ! | TTTCTTAAGTGGTACAATTT+AGG | + | chr1_3:23404321-23404340 | Msa0110550:intron | 25.0% |
| ! | ATTGACAATGAAAGGAATTA+GGG | - | chr1_3:23404401-23404420 | None:intergenic | 25.0% |
| ! | TATTGACAATGAAAGGAATT+AGG | - | chr1_3:23404402-23404421 | None:intergenic | 25.0% |
| !! | TTGAATGAATTGTATTGATG+GGG | + | chr1_3:23404456-23404475 | Msa0110550:intron | 25.0% |
| ! | TATCCATAAATGTATGAATG+TGG | - | chr1_3:23404504-23404523 | None:intergenic | 25.0% |
| ! | TTATCTCTTAAACTTTCGAT+TGG | + | chr1_3:23404965-23404984 | Msa0110550:intron | 25.0% |
| !! | TAGGTGTTAAATCCATATTT+TGG | + | chr1_3:23405053-23405072 | Msa0110550:intron | 25.0% |
| ! | ACTTCGAAATATGATATTGA+GGG | - | chr1_3:23405216-23405235 | None:intergenic | 25.0% |
| !! | CAACTAGGACTAAATATTTT+TGG | - | chr1_3:23405514-23405533 | None:intergenic | 25.0% |
| ! | GAAAAATGGTTAGTACTAAA+TGG | - | chr1_3:23405634-23405653 | None:intergenic | 25.0% |
| !! | TATTTTCAGAGTCTTAGTTT+AGG | + | chr1_3:23405714-23405733 | Msa0110550:intron | 25.0% |
| !!! | TTCTTGTCTTTGATTTTGAT+TGG | - | chr1_3:23406255-23406274 | None:intergenic | 25.0% |
| ! | TTTACTACTTCGATAGTATT+TGG | - | chr1_3:23406844-23406863 | None:intergenic | 25.0% |
| !!! | TTTATTTTTAGTTTGCCACT+AGG | + | chr1_3:23406935-23406954 | Msa0110550:intron | 25.0% |
| ! | TAATCATCGTAAATTAGAAG+AGG | - | chr1_3:23407102-23407121 | None:intergenic | 25.0% |
| !! | AATCGTTTGTTAGTGATAAT+AGG | - | chr1_3:23407231-23407250 | None:intergenic | 25.0% |
| ! | AACATACATGAATTGGTAAA+AGG | + | chr1_3:23407540-23407559 | Msa0110550:intron | 25.0% |
| ! | TCTGTCATTACGTAATATTA+GGG | - | chr1_3:23407886-23407905 | None:intergenic | 25.0% |
| ! | TTCTGTCATTACGTAATATT+AGG | - | chr1_3:23407887-23407906 | None:intergenic | 25.0% |
| !!! | TTAGAAACTTTTCAAGCATA+TGG | - | chr1_3:23408140-23408159 | None:intergenic | 25.0% |
| !! | AATATCATTACACACTTTTG+AGG | + | chr1_3:23408175-23408194 | Msa0110550:intron | 25.0% |
| ! | TGTTGCTAAAGATTAAGTTT+GGG | - | chr1_3:23408579-23408598 | None:intergenic | 25.0% |
| ! | ATGTTGCTAAAGATTAAGTT+TGG | - | chr1_3:23408580-23408599 | None:intergenic | 25.0% |
| ! | CTTAATGAATTTCTGAGTTA+AGG | - | chr1_3:23408612-23408631 | None:intergenic | 25.0% |
| ! | CTTAACTCAGAAATTCATTA+AGG | + | chr1_3:23408610-23408629 | Msa0110550:intron | 25.0% |
| !! | TAGGATTAGAACTTTTTGTT+CGG | - | chr1_3:23408678-23408697 | None:intergenic | 25.0% |
| ! | CATTAATAATAAACAAGTGC+AGG | + | chr1_3:23409062-23409081 | Msa0110550:intron | 25.0% |
| !! | GAAGAAGAGCATAAAATAAA+GGG | - | chr1_3:23409761-23409780 | None:intergenic | 25.0% |
| !! | AGAAGAAGAGCATAAAATAA+AGG | - | chr1_3:23409762-23409781 | None:intergenic | 25.0% |
| ! | TTACATAAAATTAGGGTTCA+AGG | - | chr1_3:23410487-23410506 | None:intergenic | 25.0% |
| ! | GGTGAAATAGATTAGAAATT+AGG | - | chr1_3:23410511-23410530 | None:intergenic | 25.0% |
| ! | CAATAACAAATAGTAATCGA+TGG | + | chr1_3:23410542-23410561 | Msa0110550:intron | 25.0% |
| ! | TAGCAATTAACCATGAAAAT+AGG | + | chr1_3:23410735-23410754 | Msa0110550:intron | 25.0% |
| !!! | AACATAAAGTTCTAGGTTTA+AGG | + | chr1_3:23410842-23410861 | Msa0110550:intron | 25.0% |
| !!! | TTTAAGGTTTGATTTGAGAA+GGG | + | chr1_3:23410858-23410877 | Msa0110550:intron | 25.0% |
| !! | TTTAAGAGAATGGTTCTATT+AGG | - | chr1_3:23411210-23411229 | None:intergenic | 25.0% |
| !! | TTGAAAGCATAGACTTAAAT+TGG | - | chr1_3:23411349-23411368 | None:intergenic | 25.0% |
| ! | TTATTACTTGGTAAACGATT+TGG | + | chr1_3:23411735-23411754 | Msa0110550:intron | 25.0% |
| ! | GTAATAGTAAATCAAGCAAA+TGG | - | chr1_3:23411923-23411942 | None:intergenic | 25.0% |
| ! | GTAAAAATCTGTAACTTAAG+GGG | + | chr1_3:23411951-23411970 | Msa0110550:intron | 25.0% |
| !!! | ATAATATTGACTCGATTATG+CGG | + | chr1_3:23412053-23412072 | Msa0110550:intron | 25.0% |
| !! | CATTGTCATTTATATTCACA+TGG | - | chr1_3:23412216-23412235 | None:intergenic | 25.0% |
| !!! | CGTCTTCACTTTTTTTTTTT+TGG | - | chr1_3:23412463-23412482 | None:intergenic | 25.0% |
| !!! | CCATACGTCTATTTTTTTTT+TGG | - | chr1_3:23412596-23412615 | None:intergenic | 25.0% |
| ! | CCAAAAAAAAAATAGACGTA+TGG | + | chr1_3:23412593-23412612 | Msa0110550:intron | 25.0% |
| !!! | CTTTCTTTTTGGTTTTCTAT+AGG | + | chr1_3:23412680-23412699 | Msa0110550:intron | 25.0% |
| ! | TTGAACAAGATTACTTTCAA+CGG | - | chr1_3:23412712-23412731 | None:intergenic | 25.0% |
| ! | CAAATTACAATATTCCATGA+CGG | + | chr1_3:23412869-23412888 | Msa0110550:intron | 25.0% |
| ! | AAATTACAATATTCCATGAC+GGG | + | chr1_3:23412870-23412889 | Msa0110550:intron | 25.0% |
| !!! | TGTTTTAATTTAGACCAGTT+TGG | - | chr1_3:23413006-23413025 | None:intergenic | 25.0% |
| !!! | GTTTTATTTTTTAGATCGGT+TGG | - | chr1_3:23413030-23413049 | None:intergenic | 25.0% |
| ! | TATTATTTGTGTATGTGGTT+CGG | - | chr1_3:23413149-23413168 | None:intergenic | 25.0% |
| ! | TAAAGACAGAGTAAAATCAT+AGG | - | chr1_3:23413360-23413379 | None:intergenic | 25.0% |
| ! | TGATCTGTTCCAATAATTAT+AGG | - | chr1_3:23413455-23413474 | None:intergenic | 25.0% |
| ! | AGATAAAACAAAATACAAGG+TGG | - | chr1_3:23413593-23413612 | None:intergenic | 25.0% |
| ! | CGTAGATAAAACAAAATACA+AGG | - | chr1_3:23413596-23413615 | None:intergenic | 25.0% |
| ! | TATCTACGTTGTCTATTTAT+TGG | + | chr1_3:23413608-23413627 | Msa0110550:intron | 25.0% |
| ! | ACATTTGAAAATAACCACTA+TGG | - | chr1_3:23413645-23413664 | None:intergenic | 25.0% |
| ! | TGATTGTATCTATTTATGGT+TGG | - | chr1_3:23413852-23413871 | None:intergenic | 25.0% |
| !! | GTCTGATAACTGATTTTGTT+GGG | - | chr1_3:23404142-23404161 | None:intergenic | 30.0% |
| ATGCTCTTATTGACAATGAA+AGG | - | chr1_3:23404409-23404428 | None:intergenic | 30.0% | |
| ACTCCACATTCATACATTTA+TGG | + | chr1_3:23404498-23404517 | Msa0110550:intron | 30.0% | |
| ATTTGATTCTTCACAATCGA+TGG | - | chr1_3:23404646-23404665 | None:intergenic | 30.0% | |
| ATCGATTGTGAAGAATCAAA+TGG | + | chr1_3:23404645-23404664 | Msa0110550:CDS | 30.0% | |
| AACAAAAGCTTCAAAGTCTA+TGG | + | chr1_3:23404677-23404696 | Msa0110550:CDS | 30.0% | |
| ACAAAAGCTTCAAAGTCTAT+GGG | + | chr1_3:23404678-23404697 | Msa0110550:CDS | 30.0% | |
| TAGCCTAGTATATTGTGAAT+CGG | + | chr1_3:23404855-23404874 | Msa0110550:intron | 30.0% | |
| CTTCGAAATATGATATTGAG+GGG | - | chr1_3:23405215-23405234 | None:intergenic | 30.0% | |
| GACTTCGAAATATGATATTG+AGG | - | chr1_3:23405217-23405236 | None:intergenic | 30.0% | |
| ATTTCGAAGTCTATTCTTGA+TGG | + | chr1_3:23405226-23405245 | Msa0110550:intron | 30.0% | |
| ! | ATGGTTAGGCCATAATATTT+TGG | + | chr1_3:23405245-23405264 | Msa0110550:intron | 30.0% |
| ! | TGGTTAGGCCATAATATTTT+GGG | + | chr1_3:23405246-23405265 | Msa0110550:intron | 30.0% |
| GAACAACAATTTCGTGTATT+CGG | + | chr1_3:23405276-23405295 | Msa0110550:intron | 30.0% | |
| ! | AAATGCAAGGCATCATAAAT+AGG | + | chr1_3:23405339-23405358 | Msa0110550:intron | 30.0% |
| ! | AATGCAAGGCATCATAAATA+GGG | + | chr1_3:23405340-23405359 | Msa0110550:intron | 30.0% |
| ! | AGGGTATGTTTATTCTTTTG+TGG | - | chr1_3:23405372-23405391 | None:intergenic | 30.0% |
| GATCGAGTCAATTTAACATT+AGG | + | chr1_3:23405807-23405826 | Msa0110550:intron | 30.0% | |
| ACTATTAGTCATAGAGTCTT+AGG | + | chr1_3:23405893-23405912 | Msa0110550:intron | 30.0% | |
| ! | TACAATTAGAGAGGTTGATT+AGG | - | chr1_3:23406052-23406071 | None:intergenic | 30.0% |
| ! | CATCTAGTTTACAATTAGAG+AGG | - | chr1_3:23406061-23406080 | None:intergenic | 30.0% |
| GTGTTGTATTAACTTCTTCA+AGG | + | chr1_3:23406091-23406110 | Msa0110550:intron | 30.0% | |
| ! | TTGATCTTCCTCTTTAGTTT+GGG | - | chr1_3:23406119-23406138 | None:intergenic | 30.0% |
| TGAGAACAAAGATAACAACA+AGG | + | chr1_3:23406144-23406163 | Msa0110550:intron | 30.0% | |
| ATAACAACAAGGAAAACAAC+TGG | + | chr1_3:23406155-23406174 | Msa0110550:intron | 30.0% | |
| TAACAACAAGGAAAACAACT+GGG | + | chr1_3:23406156-23406175 | Msa0110550:intron | 30.0% | |
| ! | TTTTTAGACATGTGTGTATC+TGG | - | chr1_3:23406501-23406520 | None:intergenic | 30.0% |
| GAAGAGGATTCATAACAAAT+AGG | - | chr1_3:23407086-23407105 | None:intergenic | 30.0% | |
| AAGAATTATTAGACCACCTA+AGG | - | chr1_3:23407187-23407206 | None:intergenic | 30.0% | |
| AGTGATAATAGGTTAACGTT+CGG | - | chr1_3:23407220-23407239 | None:intergenic | 30.0% | |
| TGCAGTATTTATAGAAGTCA+TGG | + | chr1_3:23407650-23407669 | Msa0110550:intron | 30.0% | |
| GCAGTATTTATAGAAGTCAT+GGG | + | chr1_3:23407651-23407670 | Msa0110550:intron | 30.0% | |
| AAATATTGAAGTCTGTTCGA+AGG | - | chr1_3:23407799-23407818 | None:intergenic | 30.0% | |
| TCATGCAATTTATACTGTTC+TGG | - | chr1_3:23407836-23407855 | None:intergenic | 30.0% | |
| ! | ACAAGGAATGGTTTAAGTTT+GGG | - | chr1_3:23407922-23407941 | None:intergenic | 30.0% |
| ! | TAGAAGGAGAATGAACTTTT+GGG | - | chr1_3:23408014-23408033 | None:intergenic | 30.0% |
| TGGGATATATTTGGATAAGT+AGG | + | chr1_3:23408231-23408250 | Msa0110550:intron | 30.0% | |
| TGGAAATACAATCAATGCAA+AGG | + | chr1_3:23408327-23408346 | Msa0110550:intron | 30.0% | |
| ATTTGCAACCAACTAAGTTT+GGG | - | chr1_3:23408544-23408563 | None:intergenic | 30.0% | |
| AATTTGCAACCAACTAAGTT+TGG | - | chr1_3:23408545-23408564 | None:intergenic | 30.0% | |
| GTTGCTAAAGATTAAGTTTG+GGG | - | chr1_3:23408578-23408597 | None:intergenic | 30.0% | |
| ! | ACAAAAAGTTCTAATCCTAC+CGG | + | chr1_3:23408679-23408698 | Msa0110550:intron | 30.0% |
| TCAACAAATTAAAACAGGGT+AGG | + | chr1_3:23408729-23408748 | Msa0110550:intron | 30.0% | |
| !! | ATTCCAAAAGTTCTAAAGGA+GGG | - | chr1_3:23408983-23409002 | None:intergenic | 30.0% |
| !! | TATTCCAAAAGTTCTAAAGG+AGG | - | chr1_3:23408984-23409003 | None:intergenic | 30.0% |
| ! | CGATATTCCAAAAGTTCTAA+AGG | - | chr1_3:23408987-23409006 | None:intergenic | 30.0% |
| TCAAACAACTGTTACTAAAC+TGG | + | chr1_3:23409012-23409031 | Msa0110550:intron | 30.0% | |
| AACTGTTACTAAACTGGAAT+AGG | + | chr1_3:23409018-23409037 | Msa0110550:intron | 30.0% | |
| CAATAGGGAAATAAGTTCAA+CGG | + | chr1_3:23409093-23409112 | Msa0110550:intron | 30.0% | |
| ACATGTTTACTTCTGCTATT+TGG | - | chr1_3:23409408-23409427 | None:intergenic | 30.0% | |
| ! | TGTATTTATGAAGAAGTGTG+AGG | - | chr1_3:23409554-23409573 | None:intergenic | 30.0% |
| CTTCTTCATAAATACATCCA+TGG | + | chr1_3:23409558-23409577 | Msa0110550:intron | 30.0% | |
| TTTACAATAACGCAAGAGAA+TGG | - | chr1_3:23409650-23409669 | None:intergenic | 30.0% | |
| ! | ACAATTCATCTTTTGTTCTC+TGG | + | chr1_3:23409697-23409716 | Msa0110550:intron | 30.0% |
| TCATCACAAATATTAAGCGA+TGG | + | chr1_3:23410598-23410617 | Msa0110550:intron | 30.0% | |
| ! | GAAACTTGTCTTTAGAAAGA+AGG | + | chr1_3:23410816-23410835 | Msa0110550:intron | 30.0% |
| AAGGTCTAACATAAAGTTCT+AGG | + | chr1_3:23410835-23410854 | Msa0110550:intron | 30.0% | |
| !! | GTTTAAGGTTTGATTTGAGA+AGG | + | chr1_3:23410857-23410876 | Msa0110550:intron | 30.0% |
| ! | CGATACTCTTTTTACTACTT+CGG | + | chr1_3:23411022-23411041 | Msa0110550:intron | 30.0% |
| AAGATATAACCTCAAGTTCA+CGG | - | chr1_3:23411053-23411072 | None:intergenic | 30.0% | |
| ATGTAACTGGTTAGTAGTTA+AGG | + | chr1_3:23411160-23411179 | Msa0110550:intron | 30.0% | |
| GCTTTCAATTACCTTAAAGA+CGG | + | chr1_3:23411361-23411380 | Msa0110550:intron | 30.0% | |
| CTACCTAAGATAAATAAACG+CGG | + | chr1_3:23411480-23411499 | Msa0110550:intron | 30.0% | |
| ! | ACTTTTCTGCAACAAAAAAC+TGG | + | chr1_3:23411568-23411587 | Msa0110550:intron | 30.0% |
| CAAGCTTATAACCTAAGTAA+GGG | - | chr1_3:23411825-23411844 | None:intergenic | 30.0% | |
| TACCAACTGAGTTAAGTTTA+CGG | - | chr1_3:23412342-23412361 | None:intergenic | 30.0% | |
| ! | TAAACTTAACTCAGTTGGTA+GGG | + | chr1_3:23412342-23412361 | Msa0110550:intron | 30.0% |
| ! | ATGTCTAGATACAGTTTTCA+AGG | - | chr1_3:23412521-23412540 | None:intergenic | 30.0% |
| ! | AAATAGACGTATGGTACTTT+TGG | + | chr1_3:23412602-23412621 | Msa0110550:intron | 30.0% |
| ! | TGATCACATAGCTTTCTTTT+TGG | + | chr1_3:23412669-23412688 | Msa0110550:intron | 30.0% |
| AAGTAATCTTGTTCAAGACA+TGG | + | chr1_3:23412716-23412735 | Msa0110550:intron | 30.0% | |
| AAACCTAAAGCTTGGTTTAT+CGG | + | chr1_3:23412771-23412790 | Msa0110550:intron | 30.0% | |
| !! | GTTCGGTTTGATTTTGAAAA+AGG | - | chr1_3:23413132-23413151 | None:intergenic | 30.0% |
| TCATTTGGATATGTGAAAAC+CGG | + | chr1_3:23413415-23413434 | Msa0110550:intron | 30.0% | |
| ACTAAACCGCCTATAATTAT+TGG | + | chr1_3:23413443-23413462 | Msa0110550:intron | 30.0% | |
| TCTGTTCCAATAATTATAGG+CGG | - | chr1_3:23413452-23413471 | None:intergenic | 30.0% | |
| ! | ACCACGAGTATTTCAATTTT+TGG | + | chr1_3:23413509-23413528 | Msa0110550:intron | 30.0% |
| TCCAAAAATTGAAATACTCG+TGG | - | chr1_3:23413513-23413532 | None:intergenic | 30.0% | |
| AACTGATCTAAATCATACCA+TGG | + | chr1_3:23413554-23413573 | Msa0110550:intron | 30.0% | |
| ACTGATCTAAATCATACCAT+GGG | + | chr1_3:23413555-23413574 | Msa0110550:intron | 30.0% | |
| GTTGTCTATTTATTGGAAAC+TGG | + | chr1_3:23413615-23413634 | Msa0110550:intron | 30.0% | |
| ! | GTATCTATTTATGGTTGGTT+AGG | - | chr1_3:23413847-23413866 | None:intergenic | 30.0% |
| GAAACTAAACTTTGGCGTAA+AGG | + | chr1_3:23404030-23404049 | Msa0110550:CDS | 35.0% | |
| !! | CATAGTATTGGCTTCTCATA+CGG | - | chr1_3:23404057-23404076 | None:intergenic | 35.0% |
| CTTCGGAAGATAGTTATCAA+GGG | - | chr1_3:23404115-23404134 | None:intergenic | 35.0% | |
| TCTTCGGAAGATAGTTATCA+AGG | - | chr1_3:23404116-23404135 | None:intergenic | 35.0% | |
| ! | TGATTTTGTTGGGATGTCTT+CGG | - | chr1_3:23404132-23404151 | None:intergenic | 35.0% |
| !! | GGTCTGATAACTGATTTTGT+TGG | - | chr1_3:23404143-23404162 | None:intergenic | 35.0% |
| AGCATTCATTTGAGTAGACA+CGG | + | chr1_3:23404424-23404443 | Msa0110550:intron | 35.0% | |
| ATTTGAGTAGACACGGTATT+AGG | + | chr1_3:23404431-23404450 | Msa0110550:intron | 35.0% | |
| ! | GAATTGTATTGATGGGGATT+AGG | + | chr1_3:23404462-23404481 | Msa0110550:intron | 35.0% |
| TCATACACGGTACATATCAA+TGG | - | chr1_3:23404582-23404601 | None:intergenic | 35.0% | |
| GATTGTGAAGAATCAAATGG+AGG | + | chr1_3:23404648-23404667 | Msa0110550:CDS | 35.0% | |
| TGTATACCAAGCAATGAGAT+AGG | + | chr1_3:23404766-23404785 | Msa0110550:CDS | 35.0% | |
| !! | ATGCCGATTCACAATATACT+AGG | - | chr1_3:23404861-23404880 | None:intergenic | 35.0% |
| !! | AATGATTTTGAAGGAGAGAG+TGG | + | chr1_3:23405029-23405048 | Msa0110550:intron | 35.0% |
| ! | GAAGTCTATTCTTGATGGTT+AGG | + | chr1_3:23405231-23405250 | Msa0110550:intron | 35.0% |
| !! | CCATAATATTTTGGGTGTCA+CGG | + | chr1_3:23405254-23405273 | Msa0110550:intron | 35.0% |
| ! | GATGCCTTGCATTTTGAATA+GGG | - | chr1_3:23405333-23405352 | None:intergenic | 35.0% |
| ! | TGATGCCTTGCATTTTGAAT+AGG | - | chr1_3:23405334-23405353 | None:intergenic | 35.0% |
| ! | AATGAAGCATCTCAAGAGAT+AGG | - | chr1_3:23405444-23405463 | None:intergenic | 35.0% |
| GCGAGTCGTAGTAAAAATAA+CGG | + | chr1_3:23405764-23405783 | Msa0110550:intron | 35.0% | |
| GTTGATCTTCCTCTTTAGTT+TGG | - | chr1_3:23406120-23406139 | None:intergenic | 35.0% | |
| ACTAAAGAGGAAGATCAACA+TGG | + | chr1_3:23406121-23406140 | Msa0110550:intron | 35.0% | |
| AACAACAAGGAAAACAACTG+GGG | + | chr1_3:23406157-23406176 | Msa0110550:intron | 35.0% | |
| ACTTTCTTCAATCCTCCAAT+TGG | - | chr1_3:23406189-23406208 | None:intergenic | 35.0% | |
| ATTGAAGAAAGTTCCACAAG+AGG | + | chr1_3:23406197-23406216 | Msa0110550:intron | 35.0% | |
| ACAAGAATGCTTTCAGAAGA+AGG | + | chr1_3:23406268-23406287 | Msa0110550:CDS | 35.0% | |
| CAAGAATGCTTTCAGAAGAA+GGG | + | chr1_3:23406269-23406288 | Msa0110550:CDS | 35.0% | |
| TGATCAAGGATCAAACTAGA+TGG | + | chr1_3:23406400-23406419 | Msa0110550:CDS | 35.0% | |
| TGCAAAATCGAAGTAGTACA+AGG | + | chr1_3:23406469-23406488 | Msa0110550:intron | 35.0% | |
| GCAAAATCGAAGTAGTACAA+GGG | + | chr1_3:23406470-23406489 | Msa0110550:intron | 35.0% | |
| ! | GTCATTAGCTTGACGAAATA+GGG | - | chr1_3:23406582-23406601 | None:intergenic | 35.0% |
| ! | AGTCATTAGCTTGACGAAAT+AGG | - | chr1_3:23406583-23406602 | None:intergenic | 35.0% |
| !! | ACTCAAAAGAAGCACTAGAT+AGG | + | chr1_3:23406600-23406619 | Msa0110550:intron | 35.0% |
| TATACACACTGATAGATCTC+TGG | + | chr1_3:23406810-23406829 | Msa0110550:intron | 35.0% | |
| AAGTTAAAAACAGTCCTCGT+GGG | - | chr1_3:23406876-23406895 | None:intergenic | 35.0% | |
| CTAACTCAAGGGATTGATTA+GGG | - | chr1_3:23407134-23407153 | None:intergenic | 35.0% | |
| TTAGACCACCTAAGGAATTA+GGG | - | chr1_3:23407179-23407198 | None:intergenic | 35.0% | |
| ATTAGACCACCTAAGGAATT+AGG | - | chr1_3:23407180-23407199 | None:intergenic | 35.0% | |
| GGTGGTCTAATAATTCTTGA+AGG | + | chr1_3:23407189-23407208 | Msa0110550:intron | 35.0% | |
| !! | CTAATAAACAGGGTTAGTCT+AGG | - | chr1_3:23407261-23407280 | None:intergenic | 35.0% |
| ACAGCAACATGTGTCAATTA+GGG | + | chr1_3:23407429-23407448 | Msa0110550:intron | 35.0% | |
| AGGGTTACAAAGATTCATCT+TGG | + | chr1_3:23407448-23407467 | Msa0110550:intron | 35.0% | |
| ! | AAGAACAAGGGTTACGATTT+TGG | - | chr1_3:23407621-23407640 | None:intergenic | 35.0% |
| TTGCTTCAAAAATTGCAGCA+CGG | + | chr1_3:23407749-23407768 | Msa0110550:intron | 35.0% | |
| ! | CAAGGAATGGTTTAAGTTTG+GGG | - | chr1_3:23407921-23407940 | None:intergenic | 35.0% |
| ! | GACAAGGAATGGTTTAAGTT+TGG | - | chr1_3:23407923-23407942 | None:intergenic | 35.0% |
| ! | CTAGAAGGAGAATGAACTTT+TGG | - | chr1_3:23408015-23408034 | None:intergenic | 35.0% |
| TCCACGCATCAATATGAAAT+AGG | + | chr1_3:23408081-23408100 | Msa0110550:intron | 35.0% | |
| CCACGCATCAATATGAAATA+GGG | + | chr1_3:23408082-23408101 | Msa0110550:intron | 35.0% | |
| !!! | TACACACTTTTGAGGTCTTT+AGG | + | chr1_3:23408183-23408202 | Msa0110550:intron | 35.0% |
| !!! | ACACACTTTTGAGGTCTTTA+GGG | + | chr1_3:23408184-23408203 | Msa0110550:intron | 35.0% |
| !! | TGAGGTCTTTAGGGTTATAA+CGG | + | chr1_3:23408193-23408212 | Msa0110550:intron | 35.0% |
| ! | GGCTACACAAAATTTGAGTT+AGG | + | chr1_3:23408252-23408271 | Msa0110550:intron | 35.0% |
| ! | ATTTGAGTTAGGCATTCCTA+CGG | + | chr1_3:23408263-23408282 | Msa0110550:intron | 35.0% |
| !! | GCATTGATTGTATTTCCACA+AGG | - | chr1_3:23408325-23408344 | None:intergenic | 35.0% |
| TTTGCAACCAACTAAGTTTG+GGG | - | chr1_3:23408543-23408562 | None:intergenic | 35.0% | |
| ! | ATTAAGTTTGGGGTTGCTAT+TGG | - | chr1_3:23408568-23408587 | None:intergenic | 35.0% |
| ! | TTACAAGCCTAGAGACTTTT+AGG | - | chr1_3:23408643-23408662 | None:intergenic | 35.0% |
| TTTCTTAACCAATTGTGAGC+CGG | - | chr1_3:23408701-23408720 | None:intergenic | 35.0% | |
| TCTTTGTCAATTACACACTG+AGG | - | chr1_3:23408788-23408807 | None:intergenic | 35.0% | |
| !! | GTTCTAGAAATGTAGTTGCA+TGG | + | chr1_3:23408835-23408854 | Msa0110550:intron | 35.0% |
| AGATTTGGCAATGAACCTTA+TGG | + | chr1_3:23408892-23408911 | Msa0110550:intron | 35.0% | |
| !! | TTCCAAAAGTTCTAAAGGAG+GGG | - | chr1_3:23408982-23409001 | None:intergenic | 35.0% |
| AACATGTATTCCAGAACCAT+AGG | + | chr1_3:23409421-23409440 | Msa0110550:intron | 35.0% | |
| !! | AAATACATCCATGGTCTTGT+CGG | + | chr1_3:23409567-23409586 | Msa0110550:intron | 35.0% |
| CGATTATTGCAAGAGTTTGA+GGG | - | chr1_3:23409625-23409644 | None:intergenic | 35.0% | |
| TCGATTATTGCAAGAGTTTG+AGG | - | chr1_3:23409626-23409645 | None:intergenic | 35.0% | |
| CTTCTTCTTCTTCTTCTTCT+TGG | + | chr1_3:23409774-23409793 | Msa0110550:intron | 35.0% | |
| TAAAATTAGGGTTCAAGGCT+TGG | - | chr1_3:23410482-23410501 | None:intergenic | 35.0% | |
| GGAACAAGTGAATATAGACA+AGG | + | chr1_3:23410645-23410664 | Msa0110550:intron | 35.0% | |
| CTCGAAACATTATTGTCTCA+AGG | - | chr1_3:23410700-23410719 | None:intergenic | 35.0% | |
| ATTAACCATGAAAATAGGCG+TGG | + | chr1_3:23410740-23410759 | Msa0110550:intron | 35.0% | |
| TAAAAGAGCCTTGGGATTAT+TGG | - | chr1_3:23410901-23410920 | None:intergenic | 35.0% | |
| TACTAGGGTCAAATTGCTTT+CGG | - | chr1_3:23411083-23411102 | None:intergenic | 35.0% | |
| TGCTAAACCTAGAATGTAAC+TGG | + | chr1_3:23411147-23411166 | Msa0110550:intron | 35.0% | |
| CTACTAACCAGTTACATTCT+AGG | - | chr1_3:23411157-23411176 | None:intergenic | 35.0% | |
| AACCATTCTCTTAAACCCTT+AGG | + | chr1_3:23411215-23411234 | Msa0110550:intron | 35.0% | |
| TACCTAAGGGTTTAAGAGAA+TGG | - | chr1_3:23411220-23411239 | None:intergenic | 35.0% | |
| AGTGTCCAAAGATTCACATA+TGG | + | chr1_3:23411272-23411291 | Msa0110550:intron | 35.0% | |
| GTGTCCAAAGATTCACATAT+GGG | + | chr1_3:23411273-23411292 | Msa0110550:intron | 35.0% | |
| ATGCCGCGTTTATTTATCTT+AGG | - | chr1_3:23411486-23411505 | None:intergenic | 35.0% | |
| !! | CAGAAAAGTAAGAAGCGTTT+AGG | - | chr1_3:23411557-23411576 | None:intergenic | 35.0% |
| !! | TAACCTAAGTAAGGGCATTA+AGG | - | chr1_3:23411817-23411836 | None:intergenic | 35.0% |
| GCAAGCTTATAACCTAAGTA+AGG | - | chr1_3:23411826-23411845 | None:intergenic | 35.0% | |
| GTAACTTAAGGGGTAAAAAC+AGG | + | chr1_3:23411961-23411980 | Msa0110550:intron | 35.0% | |
| TTATGCATAGGCTAAACACT+CGG | + | chr1_3:23412083-23412102 | Msa0110550:intron | 35.0% | |
| AATGGTCATACGATTACAAG+TGG | + | chr1_3:23412108-23412127 | Msa0110550:intron | 35.0% | |
| ! | TTTTAGATAGGGGAAGTCAT+AGG | + | chr1_3:23412284-23412303 | Msa0110550:intron | 35.0% |
| TTTAGATAGGGGAAGTCATA+GGG | + | chr1_3:23412285-23412304 | Msa0110550:intron | 35.0% | |
| ACCAACTGAGTTAAGTTTAC+GGG | - | chr1_3:23412341-23412360 | None:intergenic | 35.0% | |
| GTAAACTTAACTCAGTTGGT+AGG | + | chr1_3:23412341-23412360 | Msa0110550:intron | 35.0% | |
| GGACATTGCATAATTTATGC+AGG | + | chr1_3:23412363-23412382 | Msa0110550:intron | 35.0% | |
| ACAATTAAACGTGGAGAAGT+GGG | - | chr1_3:23412413-23412432 | None:intergenic | 35.0% | |
| !!! | ATTTGTTTTTTCCGCGTGTT+GGG | + | chr1_3:23412539-23412558 | Msa0110550:intron | 35.0% |
| ! | CTTTAGGTTTCAATTGGAAG+AGG | - | chr1_3:23412761-23412780 | None:intergenic | 35.0% |
| TCCAATTGAAACCTAAAGCT+TGG | + | chr1_3:23412763-23412782 | Msa0110550:intron | 35.0% | |
| !! | ACCAAGCTTTAGGTTTCAAT+TGG | - | chr1_3:23412767-23412786 | None:intergenic | 35.0% |
| TTGAGTTAAGATGAATGAGC+AGG | - | chr1_3:23412852-23412871 | None:intergenic | 35.0% | |
| TTAATTCCACAATGCACACA+TGG | - | chr1_3:23412897-23412916 | None:intergenic | 35.0% | |
| TGTGTGCATTGTGGAATTAA+TGG | + | chr1_3:23412897-23412916 | Msa0110550:intron | 35.0% | |
| TTCAATAGATTCCCTCTACT+TGG | + | chr1_3:23412948-23412967 | Msa0110550:intron | 35.0% | |
| TCAATAGATTCCCTCTACTT+GGG | + | chr1_3:23412949-23412968 | Msa0110550:intron | 35.0% | |
| ATATGATTTCCCCAAGTAGA+GGG | - | chr1_3:23412962-23412981 | None:intergenic | 35.0% | |
| AATATGATTTCCCCAAGTAG+AGG | - | chr1_3:23412963-23412982 | None:intergenic | 35.0% | |
| GGGGAAATCATATTCAAAGT+AGG | + | chr1_3:23412969-23412988 | Msa0110550:intron | 35.0% | |
| TTTGTAAAAACCGCTCTGAT+CGG | + | chr1_3:23413091-23413110 | Msa0110550:intron | 35.0% | |
| !! | AATCATACCATGGGTTTTGA+TGG | + | chr1_3:23413564-23413583 | Msa0110550:intron | 35.0% |
| CCACAAGCGTTACATAGTAT+TGG | - | chr1_3:23404069-23404088 | None:intergenic | 40.0% | |
| CCAATACTATGTAACGCTTG+TGG | + | chr1_3:23404066-23404085 | Msa0110550:CDS | 40.0% | |
| GGACTACATTTCAAGGCTAA+AGG | + | chr1_3:23404087-23404106 | Msa0110550:CDS | 40.0% | |
| ATCAGACCTTGACGTTGAAA+AGG | + | chr1_3:23404155-23404174 | Msa0110550:CDS | 40.0% | |
| ! | CAGATTCCTTTTCAACGTCA+AGG | - | chr1_3:23404164-23404183 | None:intergenic | 40.0% |
| !! | TGGAGATTGGTTTGAAAGCT+CGG | - | chr1_3:23404196-23404215 | None:intergenic | 40.0% |
| !! | TTTTGAAGGAGAGAGTGGTT+AGG | + | chr1_3:23405034-23405053 | Msa0110550:intron | 40.0% |
| CCGTGACACCCAAAATATTA+TGG | - | chr1_3:23405257-23405276 | None:intergenic | 40.0% | |
| AATTTCGTGTATTCGGAGAC+TGG | + | chr1_3:23405283-23405302 | Msa0110550:intron | 40.0% | |
| ACCTCCCTATTCAAAATGCA+AGG | + | chr1_3:23405326-23405345 | Msa0110550:intron | 40.0% | |
| TAAACATACCCTAGAGACTG+AGG | + | chr1_3:23405380-23405399 | Msa0110550:intron | 40.0% | |
| TCAAGAGATAGGCAAGCAAT+AGG | - | chr1_3:23405433-23405452 | None:intergenic | 40.0% | |
| ! | AGATGGACTCTGTTAAGTCT+AGG | + | chr1_3:23405959-23405978 | Msa0110550:intron | 40.0% |
| ! | TCAAGGTACCCAAACTAAAG+AGG | + | chr1_3:23406108-23406127 | Msa0110550:intron | 40.0% |
| CAACTGGGGAAAAAACCAAT+TGG | + | chr1_3:23406171-23406190 | Msa0110550:intron | 40.0% | |
| CAAGACTTATGCATGAGAGT+AGG | - | chr1_3:23406333-23406352 | None:intergenic | 40.0% | |
| CTACTCTCATGCATAAGTCT+TGG | + | chr1_3:23406331-23406350 | Msa0110550:CDS | 40.0% | |
| ! | CAGATGCGAGTTATTTCGAA+AGG | - | chr1_3:23406363-23406382 | None:intergenic | 40.0% |
| GAACAATCGTGTTGTGATCA+AGG | + | chr1_3:23406386-23406405 | Msa0110550:CDS | 40.0% | |
| CAAGGATCAAACTAGATGGT+TGG | + | chr1_3:23406404-23406423 | Msa0110550:intron | 40.0% | |
| TGTGCATGACTTCCTCAATT+GGG | - | chr1_3:23406437-23406456 | None:intergenic | 40.0% | |
| ATGTGCATGACTTCCTCAAT+TGG | - | chr1_3:23406438-23406457 | None:intergenic | 40.0% | |
| !! | CAAAAGAAGCACTAGATAGG+AGG | + | chr1_3:23406603-23406622 | Msa0110550:intron | 40.0% |
| !! | ACGTTAAACAAGCGCTGAAT+GGG | + | chr1_3:23406651-23406670 | Msa0110550:intron | 40.0% |
| GTAAAAATATCGATCCCACG+AGG | + | chr1_3:23406859-23406878 | Msa0110550:intron | 40.0% | |
| GAAGTTAAAAACAGTCCTCG+TGG | - | chr1_3:23406877-23406896 | None:intergenic | 40.0% | |
| AAACCAAATCTTCTGCCTAG+TGG | - | chr1_3:23406953-23406972 | None:intergenic | 40.0% | |
| ATCCTCTAAGTTCCCCTAAT+TGG | + | chr1_3:23407051-23407070 | Msa0110550:intron | 40.0% | |
| TAGGTGCAGTAGACCAATTA+GGG | - | chr1_3:23407067-23407086 | None:intergenic | 40.0% | |
| ATAGGTGCAGTAGACCAATT+AGG | - | chr1_3:23407068-23407087 | None:intergenic | 40.0% | |
| CCTAACTCAAGGGATTGATT+AGG | - | chr1_3:23407135-23407154 | None:intergenic | 40.0% | |
| CCTAATCAATCCCTTGAGTT+AGG | + | chr1_3:23407132-23407151 | Msa0110550:intron | 40.0% | |
| TAGACCACCTAAGGAATTAG+GGG | - | chr1_3:23407178-23407197 | None:intergenic | 40.0% | |
| CACAGCAACATGTGTCAATT+AGG | + | chr1_3:23407428-23407447 | Msa0110550:intron | 40.0% | |
| !!! | CGATTTTGAGACATCAGAGA+CGG | - | chr1_3:23407587-23407606 | None:intergenic | 40.0% |
| GCACTCAATCTGAAGAACAA+GGG | - | chr1_3:23407633-23407652 | None:intergenic | 40.0% | |
| TGCACTCAATCTGAAGAACA+AGG | - | chr1_3:23407634-23407653 | None:intergenic | 40.0% | |
| ATTACATCCTCCCTGTTTGA+GGG | - | chr1_3:23407728-23407747 | None:intergenic | 40.0% | |
| AATTACATCCTCCCTGTTTG+AGG | - | chr1_3:23407729-23407748 | None:intergenic | 40.0% | |
| TAAACCATTCCTTGTCCTCA+AGG | + | chr1_3:23407927-23407946 | Msa0110550:intron | 40.0% | |
| AATTCCTTGAGGACAAGGAA+TGG | - | chr1_3:23407934-23407953 | None:intergenic | 40.0% | |
| AAGCAAATTCCTTGAGGACA+AGG | - | chr1_3:23407939-23407958 | None:intergenic | 40.0% | |
| TGTTGCAAGCAAATTCCTTG+AGG | - | chr1_3:23407945-23407964 | None:intergenic | 40.0% | |
| ! | TTGGGTACTATCGTTTTGTC+AGG | - | chr1_3:23407996-23408015 | None:intergenic | 40.0% |
| CTAGCTCATCTTTAGCTAGA+AGG | - | chr1_3:23408030-23408049 | None:intergenic | 40.0% | |
| CCCTATTTCATATTGATGCG+TGG | - | chr1_3:23408085-23408104 | None:intergenic | 40.0% | |
| !! | GAGGTCTTTAGGGTTATAAC+GGG | + | chr1_3:23408194-23408213 | Msa0110550:intron | 40.0% |
| !! | AGGTCTTTAGGGTTATAACG+GGG | + | chr1_3:23408195-23408214 | Msa0110550:intron | 40.0% |
| GGTGAAAGGTGGGATATATT+TGG | + | chr1_3:23408222-23408241 | Msa0110550:intron | 40.0% | |
| ! | CTTTGTGCTTTAACTTCCGT+AGG | - | chr1_3:23408282-23408301 | None:intergenic | 40.0% |
| TCCTTCATTCATTCACCTTG+TGG | + | chr1_3:23408307-23408326 | Msa0110550:intron | 40.0% | |
| TCCACAAGGTGAATGAATGA+AGG | - | chr1_3:23408311-23408330 | None:intergenic | 40.0% | |
| ! | CACTCGAGTTTGAAGTTACT+CGG | + | chr1_3:23408379-23408398 | Msa0110550:intron | 40.0% |
| GACAAGTCCTAAAAGTCTCT+AGG | + | chr1_3:23408633-23408652 | Msa0110550:intron | 40.0% | |
| GGCTCACAATTGGTTAAGAA+AGG | + | chr1_3:23408700-23408719 | Msa0110550:intron | 40.0% | |
| AAACAGGGTAGGCTTCAAAA+AGG | + | chr1_3:23408740-23408759 | Msa0110550:intron | 40.0% | |
| AACCTTATGGCTGAGATTTC+TGG | + | chr1_3:23408905-23408924 | Msa0110550:intron | 40.0% | |
| ACCTTATGGCTGAGATTTCT+GGG | + | chr1_3:23408906-23408925 | Msa0110550:intron | 40.0% | |
| TGATTCAAAGGCGAAGAGTA+CGG | - | chr1_3:23408954-23408973 | None:intergenic | 40.0% | |
| AGTGCAGGAGCAATTACAAT+AGG | + | chr1_3:23409077-23409096 | Msa0110550:intron | 40.0% | |
| GTGCAGGAGCAATTACAATA+GGG | + | chr1_3:23409078-23409097 | Msa0110550:intron | 40.0% | |
| GTTTACCCACATAAGATCAG+AGG | + | chr1_3:23409372-23409391 | Msa0110550:intron | 40.0% | |
| TGAGACCTCTGATCTTATGT+GGG | - | chr1_3:23409380-23409399 | None:intergenic | 40.0% | |
| ATGAGACCTCTGATCTTATG+TGG | - | chr1_3:23409381-23409400 | None:intergenic | 40.0% | |
| GAGTTTATGAGGAAGAAAGG+TGG | - | chr1_3:23409532-23409551 | None:intergenic | 40.0% | |
| GAGGAGTTTATGAGGAAGAA+AGG | - | chr1_3:23409535-23409554 | None:intergenic | 40.0% | |
| ! | AGAAGTGTGAGGAGTTTATG+AGG | - | chr1_3:23409543-23409562 | None:intergenic | 40.0% |
| TGAGTAAACTCTTCTTGTCC+TGG | + | chr1_3:23410418-23410437 | Msa0110550:intron | 40.0% | |
| GAGTAAACTCTTCTTGTCCT+GGG | + | chr1_3:23410419-23410438 | Msa0110550:intron | 40.0% | |
| TAGACTTATCCAACAATCCC+AGG | - | chr1_3:23410439-23410458 | None:intergenic | 40.0% | |
| ! | GTTCAAGGCTTGGTTTGATT+AGG | - | chr1_3:23410472-23410491 | None:intergenic | 40.0% |
| TAGCCTATCGCATCTTCTTT+CGG | - | chr1_3:23410792-23410811 | None:intergenic | 40.0% | |
| TTGAATTCATAGCTCCCTGT+CGG | + | chr1_3:23410997-23411016 | Msa0110550:intron | 40.0% | |
| !! | AAAAGAGTATCGTTCCGACA+GGG | - | chr1_3:23411014-23411033 | None:intergenic | 40.0% |
| !! | AAAAAGAGTATCGTTCCGAC+AGG | - | chr1_3:23411015-23411034 | None:intergenic | 40.0% |
| CTCCTAAGTTCTTGCTACTA+GGG | - | chr1_3:23411098-23411117 | None:intergenic | 40.0% | |
| TCTCCTAAGTTCTTGCTACT+AGG | - | chr1_3:23411099-23411118 | None:intergenic | 40.0% | |
| GTTAAGGAAACAAGCGACTT+CGG | + | chr1_3:23411176-23411195 | Msa0110550:intron | 40.0% | |
| TTAAGGAAACAAGCGACTTC+GGG | + | chr1_3:23411177-23411196 | Msa0110550:intron | 40.0% | |
| TCTGCCCATATGTGAATCTT+TGG | - | chr1_3:23411280-23411299 | None:intergenic | 40.0% | |
| TCACATATGGGCAGATCTAT+AGG | + | chr1_3:23411285-23411304 | Msa0110550:intron | 40.0% | |
| TTCATTGCCTTGGGAAATCT+CGG | + | chr1_3:23411319-23411338 | Msa0110550:intron | 40.0% | |
| ATACGGAGATCCTTACGTAT+GGG | - | chr1_3:23411393-23411412 | None:intergenic | 40.0% | |
| GGTAGACTATACAAGTGATG+AGG | - | chr1_3:23411465-23411484 | None:intergenic | 40.0% | |
| AGACGAAACGACAATCATTG+TGG | + | chr1_3:23411690-23411709 | Msa0110550:intron | 40.0% | |
| TAAGCTTGCGTTACAAAGCT+CGG | + | chr1_3:23411837-23411856 | Msa0110550:intron | 40.0% | |
| GAGTGTTTAGCCTATGCATA+AGG | - | chr1_3:23412084-23412103 | None:intergenic | 40.0% | |
| TACAAGTGGCACTTGTCTAT+TGG | + | chr1_3:23412122-23412141 | Msa0110550:intron | 40.0% | |
| !! | TGGCACTTGTCTATTGGTTT+GGG | + | chr1_3:23412128-23412147 | Msa0110550:intron | 40.0% |
| CCAACTGAGTTAAGTTTACG+GGG | - | chr1_3:23412340-23412359 | None:intergenic | 40.0% | |
| CAATTAAACGTGGAGAAGTG+GGG | - | chr1_3:23412412-23412431 | None:intergenic | 40.0% | |
| CACAATTAAACGTGGAGAAG+TGG | - | chr1_3:23412414-23412433 | None:intergenic | 40.0% | |
| AGAGCTCACACAATTAAACG+TGG | - | chr1_3:23412422-23412441 | None:intergenic | 40.0% | |
| !! | TTTTTGGTCTAGTAGCCTAG+TGG | - | chr1_3:23412447-23412466 | None:intergenic | 40.0% |
| !!! | CATTTGTTTTTTCCGCGTGT+TGG | + | chr1_3:23412538-23412557 | Msa0110550:intron | 40.0% |
| AAAATATGCAACCCAACACG+CGG | - | chr1_3:23412553-23412572 | None:intergenic | 40.0% | |
| AAGCCGATAAACCAAGCTTT+AGG | - | chr1_3:23412777-23412796 | None:intergenic | 40.0% | |
| CTACTGAATTCAAGCTCAAC+TGG | + | chr1_3:23412815-23412834 | Msa0110550:intron | 40.0% | |
| CAATAGATTCCCTCTACTTG+GGG | + | chr1_3:23412950-23412969 | Msa0110550:intron | 40.0% | |
| AGGAATGATCACATCCAAAC+TGG | + | chr1_3:23412989-23413008 | Msa0110550:intron | 40.0% | |
| !! | ATAGGCGGTTTAGTTTGTAC+CGG | - | chr1_3:23413437-23413456 | None:intergenic | 40.0% |
| ACTCGTGGTTCAATTCAGAT+TGG | - | chr1_3:23413498-23413517 | None:intergenic | 40.0% | |
| ! | CGCTTGTGGACTACATTTCA+AGG | + | chr1_3:23404080-23404099 | Msa0110550:CDS | 45.0% |
| !! | GGAGATTGGTTTGAAAGCTC+GGG | - | chr1_3:23404195-23404214 | None:intergenic | 45.0% |
| GAGCTTTCAAACCAATCTCC+AGG | + | chr1_3:23404195-23404214 | Msa0110550:CDS | 45.0% | |
| CCAATGCCTATCTCATTGCT+TGG | - | chr1_3:23404775-23404794 | None:intergenic | 45.0% | |
| CCAAGCAATGAGATAGGCAT+TGG | + | chr1_3:23404772-23404791 | Msa0110550:CDS | 45.0% | |
| ! | GCCTTGCATTTTGAATAGGG+AGG | - | chr1_3:23405330-23405349 | None:intergenic | 45.0% |
| ATCCTCAACCTCAGTCTCTA+GGG | - | chr1_3:23405391-23405410 | None:intergenic | 45.0% | |
| TATCCTCAACCTCAGTCTCT+AGG | - | chr1_3:23405392-23405411 | None:intergenic | 45.0% | |
| !! | GAGTGGGGTTAGTTCCTAAA+TGG | - | chr1_3:23405673-23405692 | None:intergenic | 45.0% |
| CTGGGGAAAAAACCAATTGG+AGG | + | chr1_3:23406174-23406193 | Msa0110550:intron | 45.0% | |
| !! | CATCCATGAAGCTGACTTGT+CGG | - | chr1_3:23406227-23406246 | None:intergenic | 45.0% |
| ACAAGTCAGCTTCATGGATG+AGG | + | chr1_3:23406227-23406246 | Msa0110550:CDS | 45.0% | |
| GACTTATGCATGAGAGTAGG+TGG | - | chr1_3:23406330-23406349 | None:intergenic | 45.0% | |
| ! | TCAAACTAGATGGTTGGCCA+AGG | + | chr1_3:23406410-23406429 | Msa0110550:intron | 45.0% |
| AACACTTGAACATATCCGCC+AGG | + | chr1_3:23406522-23406541 | Msa0110550:intron | 45.0% | |
| ACACTTGAACATATCCGCCA+GGG | + | chr1_3:23406523-23406542 | Msa0110550:intron | 45.0% | |
| !! | GACGTTAAACAAGCGCTGAA+TGG | + | chr1_3:23406650-23406669 | Msa0110550:intron | 45.0% |
| TTGCCACTAGGCAGAAGATT+TGG | + | chr1_3:23406947-23406966 | Msa0110550:intron | 45.0% | |
| GACCAATTAGGGGAACTTAG+AGG | - | chr1_3:23407056-23407075 | None:intergenic | 45.0% | |
| AGGTGCAGTAGACCAATTAG+GGG | - | chr1_3:23407066-23407085 | None:intergenic | 45.0% | |
| AGAAGAGGGTCCTAACTCAA+GGG | - | chr1_3:23407145-23407164 | None:intergenic | 45.0% | |
| AAGAAGAGGGTCCTAACTCA+AGG | - | chr1_3:23407146-23407165 | None:intergenic | 45.0% | |
| GGGGCTGTAGTTTAAGAAGA+GGG | - | chr1_3:23407159-23407178 | None:intergenic | 45.0% | |
| AGGGGCTGTAGTTTAAGAAG+AGG | - | chr1_3:23407160-23407179 | None:intergenic | 45.0% | |
| ACTACAGCCCCTAATTCCTT+AGG | + | chr1_3:23407168-23407187 | Msa0110550:intron | 45.0% | |
| TAGGTCTAAGTCGAAAGCCA+TGG | + | chr1_3:23407292-23407311 | Msa0110550:intron | 45.0% | |
| ATTGCAGCACGGCTTGAAAT+TGG | + | chr1_3:23407760-23407779 | Msa0110550:intron | 45.0% | |
| TGATGCGTGGAGTTGTGAAT+TGG | - | chr1_3:23408072-23408091 | None:intergenic | 45.0% | |
| ! | TTAGGGTTATAACGGGGCTT+AGG | + | chr1_3:23408201-23408220 | Msa0110550:intron | 45.0% |
| ! | TATAACGGGGCTTAGGTGAA+AGG | + | chr1_3:23408208-23408227 | Msa0110550:intron | 45.0% |
| ! | AACCAACTAAGTTTGGGGTG+GGG | - | chr1_3:23408538-23408557 | None:intergenic | 45.0% |
| ! | CAACCAACTAAGTTTGGGGT+GGG | - | chr1_3:23408539-23408558 | None:intergenic | 45.0% |
| !! | TAATCCTACCGGCTCACAAT+TGG | + | chr1_3:23408690-23408709 | Msa0110550:intron | 45.0% |
| TTAACCAATTGTGAGCCGGT+AGG | - | chr1_3:23408697-23408716 | None:intergenic | 45.0% | |
| TAGGCTTCAAAAAGGCTCAC+AGG | + | chr1_3:23408748-23408767 | Msa0110550:intron | 45.0% | |
| TCCCAGAAATCTCAGCCATA+AGG | - | chr1_3:23408910-23408929 | None:intergenic | 45.0% | |
| !!! | CACCCCTCCTTTAGAACTTT+TGG | + | chr1_3:23408977-23408996 | Msa0110550:intron | 45.0% |
| !! | TTTGATGGGTTACCTGAGAC+TGG | - | chr1_3:23409254-23409273 | None:intergenic | 45.0% |
| CTCAGGTAACCCATCAAAGA+AGG | + | chr1_3:23409256-23409275 | Msa0110550:intron | 45.0% | |
| GCAAACTCAGTGGAAAACCT+AGG | + | chr1_3:23409346-23409365 | Msa0110550:intron | 45.0% | |
| ACTCAGTGGAAAACCTAGGA+CGG | + | chr1_3:23409350-23409369 | Msa0110550:intron | 45.0% | |
| TTATGTGGGTAAACCGTCCT+AGG | - | chr1_3:23409366-23409385 | None:intergenic | 45.0% | |
| TCCAGAACCATAGGATGAAC+CGG | + | chr1_3:23409430-23409449 | Msa0110550:intron | 45.0% | |
| TCAACATGGTTCTTATCCGC+CGG | - | chr1_3:23409452-23409471 | None:intergenic | 45.0% | |
| TCTTCTTGTCCTGGGATTGT+TGG | + | chr1_3:23410427-23410446 | Msa0110550:intron | 45.0% | |
| ! | AGCAACCACGCCTATTTTCA+TGG | - | chr1_3:23410748-23410767 | None:intergenic | 45.0% |
| AGACCGAAAGAAGATGCGAT+AGG | + | chr1_3:23410786-23410805 | Msa0110550:intron | 45.0% | |
| AGAAGGGTTTGTCACCATGA+CGG | + | chr1_3:23410874-23410893 | Msa0110550:intron | 45.0% | |
| TTGGGATTATTGGTCCGTCA+TGG | - | chr1_3:23410891-23410910 | None:intergenic | 45.0% | |
| !! | ATGACGGACCAATAATCCCA+AGG | + | chr1_3:23410890-23410909 | Msa0110550:intron | 45.0% |
| GACCCTAGTAGCAAGAACTT+AGG | + | chr1_3:23411093-23411112 | Msa0110550:intron | 45.0% | |
| TAAGGAAACAAGCGACTTCG+GGG | + | chr1_3:23411178-23411197 | Msa0110550:intron | 45.0% | |
| !! | CACGTACTGGTTCTACCTAA+GGG | - | chr1_3:23411233-23411252 | None:intergenic | 45.0% |
| GAGATTTCCCAAGGCAATGA+AGG | - | chr1_3:23411320-23411339 | None:intergenic | 45.0% | |
| TGGATTTCCGAGATTTCCCA+AGG | - | chr1_3:23411329-23411348 | None:intergenic | 45.0% | |
| ATGGGGTCTTACCGTCTTTA+AGG | - | chr1_3:23411375-23411394 | None:intergenic | 45.0% | |
| TACGGAGATCCTTACGTATG+GGG | - | chr1_3:23411392-23411411 | None:intergenic | 45.0% | |
| CATACGGAGATCCTTACGTA+TGG | - | chr1_3:23411394-23411413 | None:intergenic | 45.0% | |
| AACTGCACCTGCTGATCATA+CGG | - | chr1_3:23411410-23411429 | None:intergenic | 45.0% | |
| ACGTGACTAACCTAGAAGGT+TGG | - | chr1_3:23411434-23411453 | None:intergenic | 45.0% | |
| ATACAAGTGATGAGGCCGTT+GGG | - | chr1_3:23411457-23411476 | None:intergenic | 45.0% | |
| TATACAAGTGATGAGGCCGT+TGG | - | chr1_3:23411458-23411477 | None:intergenic | 45.0% | |
| !! | TGGTGGACGGTCTTTTATGT+GGG | - | chr1_3:23411794-23411813 | None:intergenic | 45.0% |
| !! | AAGTAAGGGCATTAAGGTGG+TGG | - | chr1_3:23411811-23411830 | None:intergenic | 45.0% |
| !! | CCTAAGTAAGGGCATTAAGG+TGG | - | chr1_3:23411814-23411833 | None:intergenic | 45.0% |
| CCACCTTAATGCCCTTACTT+AGG | + | chr1_3:23411811-23411830 | Msa0110550:intron | 45.0% | |
| TGCGGATAGTCCTTATGCAT+AGG | + | chr1_3:23412071-23412090 | Msa0110550:intron | 45.0% | |
| TAGGCTAAACACTCGGCAAA+TGG | + | chr1_3:23412090-23412109 | Msa0110550:intron | 45.0% | |
| ! | GTGGCACTTGTCTATTGGTT+TGG | + | chr1_3:23412127-23412146 | Msa0110550:intron | 45.0% |
| !! | GTCTATTGGTTTGGGCAATG+TGG | + | chr1_3:23412136-23412155 | Msa0110550:intron | 45.0% |
| CCCCGTAAACTTAACTCAGT+TGG | + | chr1_3:23412337-23412356 | Msa0110550:intron | 45.0% | |
| CATAATTTATGCAGGAGCCG+AGG | + | chr1_3:23412371-23412390 | Msa0110550:intron | 45.0% | |
| ! | ATGGTTGGTTAGGCATGTTG+AGG | - | chr1_3:23413837-23413856 | None:intergenic | 45.0% |
| !!! | TTTTTTATTTTTTTAAATTG+AGG | - | chr1_3:23405188-23405207 | None:intergenic | 5.0% |
| !! | AATATTGAAAATTAAATAAT+GGG | - | chr1_3:23406683-23406702 | None:intergenic | 5.0% |
| !! | AAATATTGAAAATTAAATAA+TGG | - | chr1_3:23406684-23406703 | None:intergenic | 5.0% |
| !! | TAGGGAGGTTGATGAAGTCG+AGG | - | chr1_3:23405315-23405334 | None:intergenic | 50.0% |
| TACCCTAGAGACTGAGGTTG+AGG | + | chr1_3:23405386-23405405 | Msa0110550:intron | 50.0% | |
| GCAAGCAATAGGAGCCTCAA+GGG | - | chr1_3:23405422-23405441 | None:intergenic | 50.0% | |
| ACTTGTCGGATCTCCTCTTG+TGG | - | chr1_3:23406213-23406232 | None:intergenic | 50.0% | |
| GATCCGACAAGTCAGCTTCA+TGG | + | chr1_3:23406221-23406240 | Msa0110550:CDS | 50.0% | |
| GACTTCCTCAATTGGGACCT+TGG | - | chr1_3:23406430-23406449 | None:intergenic | 50.0% | |
| TTGAACATATCCGCCAGGGT+TGG | + | chr1_3:23406527-23406546 | Msa0110550:intron | 50.0% | |
| ACGCTAAACACGCGCTGAAT+AGG | + | chr1_3:23406551-23406570 | Msa0110550:intron | 50.0% | |
| CTAAACACGCGCTGAATAGG+AGG | + | chr1_3:23406554-23406573 | Msa0110550:intron | 50.0% | |
| GTTTAACGTCTGAGTCCCGA+CGG | - | chr1_3:23406640-23406659 | None:intergenic | 50.0% | |
| GGGGAACTTAGAGGATTCGA+CGG | - | chr1_3:23407047-23407066 | None:intergenic | 50.0% | |
| ACAGCCCCTAATTCCTTAGG+TGG | + | chr1_3:23407171-23407190 | Msa0110550:intron | 50.0% | |
| AAGTCGAAAGCCATGGTCAG+TGG | + | chr1_3:23407299-23407318 | Msa0110550:intron | 50.0% | |
| GACATCAGAGACGGCTAGAA+GGG | - | chr1_3:23407578-23407597 | None:intergenic | 50.0% | |
| AGACATCAGAGACGGCTAGA+AGG | - | chr1_3:23407579-23407598 | None:intergenic | 50.0% | |
| TCCCTGTTTGAGGGAAATCG+CGG | - | chr1_3:23407719-23407738 | None:intergenic | 50.0% | |
| TGCGTGGAGTTGTGAATTGG+TGG | - | chr1_3:23408069-23408088 | None:intergenic | 50.0% | |
| ATGTAGACCTGCATGTCGAC+TGG | - | chr1_3:23408113-23408132 | None:intergenic | 50.0% | |
| ! | ACCAACTAAGTTTGGGGTGG+GGG | - | chr1_3:23408537-23408556 | None:intergenic | 50.0% |
| GCAACCAACTAAGTTTGGGG+TGG | - | chr1_3:23408540-23408559 | None:intergenic | 50.0% | |
| !! | CACACTGAGGCAAAAGTGCT+TGG | - | chr1_3:23408775-23408794 | None:intergenic | 50.0% |
| GGAGGGGTGACTTGATTCAA+AGG | - | chr1_3:23408966-23408985 | None:intergenic | 50.0% | |
| GGTGATGAGGATGTGGACAT+GGG | - | chr1_3:23409230-23409249 | None:intergenic | 50.0% | |
| ! | TGGTGATGAGGATGTGGACA+TGG | - | chr1_3:23409231-23409250 | None:intergenic | 50.0% |
| GGTAACCCATCAAAGAAGGC+TGG | + | chr1_3:23409260-23409279 | Msa0110550:intron | 50.0% | |
| AACCCATCAAAGAAGGCTGG+TGG | + | chr1_3:23409263-23409282 | Msa0110550:intron | 50.0% | |
| ACCCATCAAAGAAGGCTGGT+GGG | + | chr1_3:23409264-23409283 | Msa0110550:intron | 50.0% | |
| TCCCACCAGCCTTCTTTGAT+GGG | - | chr1_3:23409268-23409287 | None:intergenic | 50.0% | |
| ATCCCACCAGCCTTCTTTGA+TGG | - | chr1_3:23409269-23409288 | None:intergenic | 50.0% | |
| CTCTCGAAAGAGCCAGTGAT+CGG | + | chr1_3:23409298-23409317 | Msa0110550:intron | 50.0% | |
| ATGCATAGGAAGCCGATCAC+TGG | - | chr1_3:23409313-23409332 | None:intergenic | 50.0% | |
| !! | TTCCACTGAGTTTGCTGCAG+AGG | - | chr1_3:23409341-23409360 | None:intergenic | 50.0% |
| AGAACCATAGGATGAACCGG+CGG | + | chr1_3:23409433-23409452 | Msa0110550:intron | 50.0% | |
| !! | TTATCCGCCGGTTCATCCTA+TGG | - | chr1_3:23409440-23409459 | None:intergenic | 50.0% |
| AGAGGAGAAGGCAGTCAACA+TGG | - | chr1_3:23409466-23409485 | None:intergenic | 50.0% | |
| CCTCAAATGGAGAGAGGAGA+AGG | - | chr1_3:23409478-23409497 | None:intergenic | 50.0% | |
| CCTTCTCCTCTCTCCATTTG+AGG | + | chr1_3:23409475-23409494 | Msa0110550:intron | 50.0% | |
| TCTCCTCTCTCCATTTGAGG+TGG | + | chr1_3:23409478-23409497 | Msa0110550:intron | 50.0% | |
| !! | TCCATGGTCTTGTCGGTGAT+AGG | + | chr1_3:23409574-23409593 | Msa0110550:intron | 50.0% |
| TCGGTGATAGGCTGAACAGT+AGG | + | chr1_3:23409586-23409605 | Msa0110550:intron | 50.0% | |
| TCGGTAGAACCGTGAACTTG+AGG | + | chr1_3:23411041-23411060 | Msa0110550:intron | 50.0% | |
| !! | GCACGTACTGGTTCTACCTA+AGG | - | chr1_3:23411234-23411253 | None:intergenic | 50.0% |
| ACCCTTGACCTTCATTGCCT+TGG | + | chr1_3:23411309-23411328 | Msa0110550:intron | 50.0% | |
| CCCAAGGCAATGAAGGTCAA+GGG | - | chr1_3:23411313-23411332 | None:intergenic | 50.0% | |
| CCCTTGACCTTCATTGCCTT+GGG | + | chr1_3:23411310-23411329 | Msa0110550:intron | 50.0% | |
| TCCCAAGGCAATGAAGGTCA+AGG | - | chr1_3:23411314-23411333 | None:intergenic | 50.0% | |
| ACGGTAAGACCCCATACGTA+AGG | + | chr1_3:23411380-23411399 | Msa0110550:intron | 50.0% | |
| AGGATCTCCGTATGATCAGC+AGG | + | chr1_3:23411400-23411419 | Msa0110550:intron | 50.0% | |
| GGTGCAGTTTCCAACCTTCT+AGG | + | chr1_3:23411421-23411440 | Msa0110550:intron | 50.0% | |
| TGGGACGTGACTAACCTAGA+AGG | - | chr1_3:23411438-23411457 | None:intergenic | 50.0% | |
| ! | CTAGGTTAGTCACGTCCCAA+CGG | + | chr1_3:23411439-23411458 | Msa0110550:intron | 50.0% |
| !!! | GTGGTGGACGGTCTTTTATG+TGG | - | chr1_3:23411795-23411814 | None:intergenic | 50.0% |
| !! | AAGGGCATTAAGGTGGTGGA+CGG | - | chr1_3:23411807-23411826 | None:intergenic | 50.0% |
| AGATAGGGGAAGTCATAGGG+AGG | + | chr1_3:23412288-23412307 | Msa0110550:intron | 50.0% | |
| ! | TTGTGTGAGCTCTAGCCACT+AGG | + | chr1_3:23412429-23412448 | Msa0110550:intron | 50.0% |
| CATACACGATCCGATCAGAG+CGG | - | chr1_3:23413104-23413123 | None:intergenic | 50.0% | |
| GTGGACACCATCAAAACCCA+TGG | - | chr1_3:23413574-23413593 | None:intergenic | 50.0% | |
| !! | GGAGGTTGATGAAGTCGAGG+AGG | - | chr1_3:23405312-23405331 | None:intergenic | 55.0% |
| GAGGATAGACTCCTCCCTTG+AGG | + | chr1_3:23405405-23405424 | Msa0110550:intron | 55.0% | |
| AGCAATAGGAGCCTCAAGGG+AGG | - | chr1_3:23405419-23405438 | None:intergenic | 55.0% | |
| GGCAAGCAATAGGAGCCTCA+AGG | - | chr1_3:23405423-23405442 | None:intergenic | 55.0% | |
| GTTGGCCAAGGTCCCAATTG+AGG | + | chr1_3:23406422-23406441 | Msa0110550:intron | 55.0% | |
| GTTTAGCGTTCCAACCCTGG+CGG | - | chr1_3:23406540-23406559 | None:intergenic | 55.0% | |
| CGTGTTTAGCGTTCCAACCC+TGG | - | chr1_3:23406543-23406562 | None:intergenic | 55.0% | |
| GGAGGCAACCTATTGACCGT+CGG | + | chr1_3:23406621-23406640 | Msa0110550:intron | 55.0% | |
| GAGGCAACCTATTGACCGTC+GGG | + | chr1_3:23406622-23406641 | Msa0110550:intron | 55.0% | |
| TCTGAGTCCCGACGGTCAAT+AGG | - | chr1_3:23406632-23406651 | None:intergenic | 55.0% | |
| GAACGAACGACCACTGACCA+TGG | - | chr1_3:23407312-23407331 | None:intergenic | 55.0% | |
| GCACGCCTATATACATGGCG+CGG | - | chr1_3:23407697-23407716 | None:intergenic | 55.0% | |
| TCGCGGCACGCCTATATACA+TGG | - | chr1_3:23407702-23407721 | None:intergenic | 55.0% | |
| TGCCGCGATTTCCCTCAAAC+AGG | + | chr1_3:23407714-23407733 | Msa0110550:intron | 55.0% | |
| GCCGCGATTTCCCTCAAACA+GGG | + | chr1_3:23407715-23407734 | Msa0110550:intron | 55.0% | |
| GCGATTTCCCTCAAACAGGG+AGG | + | chr1_3:23407718-23407737 | Msa0110550:intron | 55.0% | |
| AGCACGGCTTGAAATTGGCG+TGG | + | chr1_3:23407765-23407784 | Msa0110550:intron | 55.0% | |
| GGTTCTACCAGTCGACATGC+AGG | + | chr1_3:23408103-23408122 | Msa0110550:intron | 55.0% | |
| AACGGGGCTTAGGTGAAAGG+TGG | + | chr1_3:23408211-23408230 | Msa0110550:intron | 55.0% | |
| ACGGGGCTTAGGTGAAAGGT+GGG | + | chr1_3:23408212-23408231 | Msa0110550:intron | 55.0% | |
| ACCCCCACCCCAAACTTAGT+TGG | + | chr1_3:23408533-23408552 | Msa0110550:intron | 55.0% | |
| TGAGGATGTGGACATGGGAC+TGG | - | chr1_3:23409225-23409244 | None:intergenic | 55.0% | |
| ! | GACTGGTGGTGATGAGGATG+TGG | - | chr1_3:23409237-23409256 | None:intergenic | 55.0% |
| TCCTCATCACCACCAGTCTC+AGG | + | chr1_3:23409239-23409258 | Msa0110550:intron | 55.0% | |
| ! | ACCTGAGACTGGTGGTGATG+AGG | - | chr1_3:23409243-23409262 | None:intergenic | 55.0% |
| !! | GATGGGTTACCTGAGACTGG+TGG | - | chr1_3:23409251-23409270 | None:intergenic | 55.0% |
| ! | CTGCAGAGGCACAGATGCAT+AGG | - | chr1_3:23409327-23409346 | None:intergenic | 55.0% |
| TGCCTCTGCAGCAAACTCAG+TGG | + | chr1_3:23409336-23409355 | Msa0110550:intron | 55.0% | |
| ! | GCCGGTTCATCCTATGGTTC+TGG | - | chr1_3:23409434-23409453 | None:intergenic | 55.0% |
| CAGCCACCTCAAATGGAGAG+AGG | - | chr1_3:23409484-23409503 | None:intergenic | 55.0% | |
| ACAGCAGCAGCCACCTCAAA+TGG | - | chr1_3:23409491-23409510 | None:intergenic | 55.0% | |
| ! | ATTTGAGGTGGCTGCTGCTG+TGG | + | chr1_3:23409490-23409509 | Msa0110550:intron | 55.0% |
| ! | TTTGAGGTGGCTGCTGCTGT+GGG | + | chr1_3:23409491-23409510 | Msa0110550:intron | 55.0% |
| GCCTATCACCGACAAGACCA+TGG | - | chr1_3:23409578-23409597 | None:intergenic | 55.0% | |
| AGAACCAGTACGTGCGAGAG+AGG | + | chr1_3:23411239-23411258 | Msa0110550:intron | 55.0% | |
| GAACCAGTACGTGCGAGAGA+GGG | + | chr1_3:23411240-23411259 | Msa0110550:intron | 55.0% | |
| GCTTGCGTTACAAAGCTCGG+CGG | + | chr1_3:23411840-23411859 | Msa0110550:intron | 55.0% | |
| TAGGGGAAGTCATAGGGAGG+TGG | + | chr1_3:23412291-23412310 | Msa0110550:intron | 55.0% | |
| AGGGGAAGTCATAGGGAGGT+GGG | + | chr1_3:23412292-23412311 | Msa0110550:intron | 55.0% | |
| ATGCACACATGGACCCGTCA+TGG | - | chr1_3:23412886-23412905 | None:intergenic | 55.0% | |
| ACGGGTCCATGTGTGCATTG+TGG | + | chr1_3:23412888-23412907 | Msa0110550:intron | 55.0% | |
| CGCTCTGATCGGATCGTGTA+TGG | + | chr1_3:23413102-23413121 | Msa0110550:intron | 55.0% | |
| TGGAAACTGGCGAGCCATAG+TGG | + | chr1_3:23413628-23413647 | Msa0110550:intron | 55.0% | |
| ! | ATGGCGCGGCGCGATTTTGA+CGG | - | chr1_3:23407683-23407702 | None:intergenic | 60.0% |
| TCGCGCCGCGCCATGTATAT+AGG | + | chr1_3:23407689-23407708 | Msa0110550:intron | 60.0% | |
| ! | GCGAAGAGTACGGCGTTGCT+AGG | - | chr1_3:23408944-23408963 | None:intergenic | 60.0% |
| TTGAGGTGGCTGCTGCTGTG+GGG | + | chr1_3:23409492-23409511 | Msa0110550:intron | 60.0% | |
| ACACCCTCTCTCGCACGTAC+TGG | - | chr1_3:23411246-23411265 | None:intergenic | 60.0% | |
| GGGGAAGTCATAGGGAGGTG+GGG | + | chr1_3:23412293-23412312 | Msa0110550:intron | 60.0% | |
| AGGAGCCGAGGTTCGAACCT+CGG | + | chr1_3:23412383-23412402 | Msa0110550:intron | 60.0% | |
| GGTGTCCGAGGTTCGAACCT+CGG | - | chr1_3:23412391-23412410 | None:intergenic | 60.0% | |
| !! | CGGCGCGATTTTGACGGGTC+AGG | - | chr1_3:23407677-23407696 | None:intergenic | 65.0% |
| !! | TGGCGCGGCGCGATTTTGAC+GGG | - | chr1_3:23407682-23407701 | None:intergenic | 65.0% |
| TGAGGTGGCTGCTGCTGTGG+GGG | + | chr1_3:23409493-23409512 | Msa0110550:intron | 65.0% | |
| !! | TGCTGCTGTGGGGGTGCTTC+AGG | + | chr1_3:23409502-23409521 | Msa0110550:intron | 65.0% |
| ! | GTGGAGAAGTGGGGTGTCCG+AGG | - | chr1_3:23412403-23412422 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 23404018 | 23413908 | 23404018 | ID=Msa0110550;Name=Msa0110550 |
| chr1_3 | mRNA | 23404018 | 23413908 | 23404018 | ID=Msa0110550-mRNA-1;Parent=Msa0110550;Name=Msa0110550-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0|0|1|0.33|0.25|4|0|201 |
| chr1_3 | exon | 23404018 | 23404216 | 23404018 | ID=Msa0110550-mRNA-1:exon:8211;Parent=Msa0110550-mRNA-1 |
| chr1_3 | exon | 23404635 | 23404816 | 23404635 | ID=Msa0110550-mRNA-1:exon:8212;Parent=Msa0110550-mRNA-1 |
| chr1_3 | exon | 23406204 | 23406421 | 23406204 | ID=Msa0110550-mRNA-1:exon:8213;Parent=Msa0110550-mRNA-1 |
| chr1_3 | exon | 23413902 | 23413908 | 23413902 | ID=Msa0110550-mRNA-1:exon:8214;Parent=Msa0110550-mRNA-1 |
| chr1_3 | CDS | 23404018 | 23404216 | 23404018 | ID=Msa0110550-mRNA-1:cds;Parent=Msa0110550-mRNA-1 |
| chr1_3 | CDS | 23404635 | 23404816 | 23404635 | ID=Msa0110550-mRNA-1:cds;Parent=Msa0110550-mRNA-1 |
| chr1_3 | CDS | 23406204 | 23406421 | 23406204 | ID=Msa0110550-mRNA-1:cds;Parent=Msa0110550-mRNA-1 |
| chr1_3 | CDS | 23413902 | 23413908 | 23413902 | ID=Msa0110550-mRNA-1:cds;Parent=Msa0110550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
