AlfalfaGEDB | Msa0110560

M. sativa cultivar zhongmu-4 / Msa0110560

KEGG: -
GO: -
PFAM: PF00320.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0110560	AES60398.2	86.364	66	9	0	1	66	1	66	8.05e-34	125

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0110560	G7I6L4	86.364	66	9	0	1	66	1	66	3.85e-34	125

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TFs/TRs:

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Gene ID	Type	Classification
Msa0110560	TF	C2C2-GATA

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0110560	MtrunA17_Chr5g0399781	52.830	53	24	1	3	55	12	63	9.52e-11	57.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 23 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATACAACAAGAGAATGGT+TGG	0.554118	1_3:+23414507	Msa0110560:CDS
AAGAAGGGTCTGTTAAATCC+TGG	0.447476	1_3:-23414969	None:intergenic
AAGGGTCTGTTAAATCCTGG+GGG	0.732667	1_3:-23414966	None:intergenic
AATTACGCGGAAAATCCTTA+AGG	0.494267	1_3:-23414933	None:intergenic
ACTCCACATTCATACATTTA+TGG	0.193918	1_3:+23414466	Msa0110560:CDS
AGAAGGGTCTGTTAAATCCT+GGG	0.503472	1_3:-23414968	None:intergenic
ATCAGACCTTGACGTTGAAA+AGG	0.465983	1_3:+23414096	Msa0110560:CDS
ATGCAAATACAACAAGAGAA+TGG	0.543799	1_3:+23414503	Msa0110560:CDS
CATAGTATTGGCTTCTCATA+CGG	0.490978	1_3:-23413995	None:intergenic
CCAATACTATGTAACGCTTG+TGG	0.608782	1_3:+23414007	Msa0110560:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGCTCTTATTGACAATGAA+AGG	-	chr1_3:23414377-23414396	None:intergenic	30.0%
TTCATTCAAAACCTAATACC+GGG	-	chr1_3:23414413-23414432	None:intergenic	30.0%
ACTCCACATTCATACATTTA+TGG	+	chr1_3:23414466-23414485	Msa0110560:CDS	30.0%
ATGCAAATACAACAAGAGAA+TGG	+	chr1_3:23414503-23414522	Msa0110560:CDS	30.0%
AAATACAACAAGAGAATGGT+TGG	+	chr1_3:23414507-23414526	Msa0110560:CDS	30.0%
ATTTGATTCTTCACAATCGA+TGG	-	chr1_3:23414678-23414697	None:intergenic	30.0%
ATCGATTGTGAAGAATCAAA+TGG	+	chr1_3:23414677-23414696	Msa0110560:intron	30.0%
ATGCTGATGAATTATGTAGA+TGG	-	chr1_3:23414835-23414854	None:intergenic	30.0%
AGGACTGCAAAAAAAACAAA+CGG	+	chr1_3:23414877-23414896	Msa0110560:CDS	30.0%
ATGCTCTTATTGACAATGAA+AGG	-	chr1_3:23414377-23414396	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	23413959	23414993	23413959	ID=Msa0110560;Name=Msa0110560
chr1_3	mRNA	23413959	23414993	23413959	ID=Msa0110560-mRNA-1;Parent=Msa0110560;Name=Msa0110560-mRNA-1;_AED=0.71;_eAED=0.71;_QI=0\|0\|0\|0.33\|1\|1\|3\|0\|130
chr1_3	exon	23413959	23414157	23413959	ID=Msa0110560-mRNA-1:exon:8220;Parent=Msa0110560-mRNA-1
chr1_3	exon	23414452	23414528	23414452	ID=Msa0110560-mRNA-1:exon:8221;Parent=Msa0110560-mRNA-1
chr1_3	exon	23414877	23414993	23414877	ID=Msa0110560-mRNA-1:exon:8222;Parent=Msa0110560-mRNA-1
chr1_3	CDS	23413959	23414157	23413959	ID=Msa0110560-mRNA-1:cds;Parent=Msa0110560-mRNA-1
chr1_3	CDS	23414452	23414528	23414452	ID=Msa0110560-mRNA-1:cds;Parent=Msa0110560-mRNA-1
chr1_3	CDS	23414877	23414993	23414877	ID=Msa0110560-mRNA-1:cds;Parent=Msa0110560-mRNA-1

Gene Sequence

>Msa0110560

ATGGTTTTGACAGAAACTAAACTTTGGCGTAAAGGACCGTATGAGAAGCCAATACTATGTAACGCTTGTGGACTACATTTCAAGGCTAAAGGAACCCTTGATAACTATCTTCCGAAGACATCCCAACAAAATCAGTTATCAGACCTTGACGTTGAAAAGGAATCTGAAAGTGATCCCGAGCTTTCAAACCAATCTCCAGGTGACATACATACAACTCCACATTCATACATTTATGGATATATTTGTGCTAATGCAAATACAACAAGAGAATGGTTGAGGACTGCAAAAAAAACAAACGGTGGAGGTAGTCTGAGACGTGCTGATCGCACTGTCCTTAAGGATTTTCCGCGTAATTATACGCTAATCCCCCAGGATTTAACAGACCCTTCTTGA

Protein sequence

>Msa0110560

MVLTETKLWRKGPYEKPILCNACGLHFKAKGTLDNYLPKTSQQNQLSDLDVEKESESDPELSNQSPGDIHTTPHSYIYGYICANANTTREWLRTAKKTNGGGSLRRADRTVLKDFPRNYTLIPQDLTDPS*