AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0110640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0110640 MtrunA17_Chr1g0168571 88.110 328 35 1 1 328 1 324 0.0 591
Msa0110640 MtrunA17_Chr1g0174911 56.734 349 103 11 1 328 1 322 4.89e-114 333
Msa0110640 MtrunA17_Chr7g0274971 62.564 195 61 2 1 183 1 195 3.96e-80 243
Msa0110640 MtrunA17_Chr7g0263931 34.194 155 83 6 13 157 19 164 1.10e-15 76.6
Msa0110640 MtrunA17_Chr7g0214071 32.639 144 85 4 13 154 23 156 3.78e-15 74.3
Msa0110640 MtrunA17_Chr3g0130101 33.136 169 94 10 13 174 15 171 2.07e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0110640 AT5G13180.1 34.247 146 81 6 13 154 22 156 1.23e-13 70.1
Msa0110640 AT3G10480.2 32.895 152 88 8 13 158 35 178 1.76e-12 68.2
Msa0110640 AT5G08790.1 32.275 189 105 8 3 181 5 180 8.41e-12 65.1
Msa0110640 AT3G10480.1 32.680 153 88 8 13 158 35 179 1.28e-11 65.5
Msa0110640 AT2G24430.2 29.730 148 94 5 13 157 24 164 1.75e-11 64.7
Msa0110640 AT2G24430.1 29.730 148 94 5 13 157 24 164 1.75e-11 64.7
Msa0110640 AT5G63790.1 32.919 161 89 6 3 154 48 198 8.17e-11 62.8
Msa0110640 AT5G63790.2 32.919 161 89 6 3 154 58 208 9.41e-11 62.4

Find 67 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTACCGTTTGATTCGTTTCT+TGG 0.160450 1_3:+23587284 None:intergenic
AGTGGCAGATTTCTTCTTTA+AGG 0.216337 1_3:+23588122 None:intergenic
CAAAGAATCCATGGGAGATT+TGG 0.252767 1_3:-23588200 Msa0110640:CDS
TCTGCATAGAACATAATTAT+TGG 0.253885 1_3:+23587811 None:intergenic
CCTCAACTCTTCTTCCAATA+AGG 0.285996 1_3:-23588334 Msa0110640:CDS
AATGGGTGCGATAACCTTAT+TGG 0.291794 1_3:+23588320 None:intergenic
TAAGTTGATTACTTGGATTT+TGG 0.305325 1_3:+23586584 None:intergenic
GCACCATTGGACTTGGTAGA+TGG 0.309802 1_3:-23588083 Msa0110640:CDS
CAGAACAATAATGGTTGGTT+AGG 0.310768 1_3:-23586619 Msa0110640:CDS
TAAAACTGATTGGAAATCAT+TGG 0.339556 1_3:+23586403 None:intergenic
CCATTGTTAAGTTGATTACT+TGG 0.345697 1_3:+23586577 None:intergenic
ACAGTGACTGCGGCAGGTTC+AGG 0.347861 1_3:+23587713 None:intergenic
TCAGGAACGACTGTCTTTCT+TGG 0.364568 1_3:+23587731 None:intergenic
ATATGTAGCACTTACAGATT+TGG 0.368326 1_3:+23587172 None:intergenic
AAAGAATCCATGGGAGATTT+GGG 0.379921 1_3:-23588199 Msa0110640:CDS
GCAAGAACAATAGTCTCTTT+TGG 0.383036 1_3:+23587209 None:intergenic
TTCATTGATAAGCAATCCTT+TGG 0.384426 1_3:-23587923 Msa0110640:intron
TTCAAGAATGGTGATATGAT+TGG 0.399692 1_3:+23588242 None:intergenic
TTGTAGAAGTTCATTATCAA+TGG 0.404907 1_3:+23588302 None:intergenic
AGAACAATAATGGTTGGTTA+GGG 0.421939 1_3:-23586618 Msa0110640:CDS
GCAAGATCCATCCACCATCT+TGG 0.430936 1_3:+23587965 None:intergenic
CAAGATCCATCCACCATCTT+GGG 0.431083 1_3:+23587966 None:intergenic
ATCTACTTCTTCGCTTGTAA+TGG 0.434104 1_3:+23586525 None:intergenic
ATTCTTGAATATGATTTGTT+CGG 0.434843 1_3:-23588228 Msa0110640:CDS
TAAGTCCTTATAAAACTGAT+TGG 0.443750 1_3:+23586393 None:intergenic
ATATTGTAGCAGAACAATAA+TGG 0.447201 1_3:-23586628 Msa0110640:intron
TCAAGAATGGTGATATGATT+GGG 0.471621 1_3:+23588243 None:intergenic
TGGGAGATTTGGGAAGAGTT+CGG 0.477611 1_3:-23588189 Msa0110640:CDS
CTTATTGGAAGAAGAGTTGA+GGG 0.477892 1_3:+23588335 None:intergenic
GAAACGAATCAAACGGTACT+GGG 0.481814 1_3:-23587280 Msa0110640:CDS
AGAAACGAATCAAACGGTAC+TGG 0.483504 1_3:-23587281 Msa0110640:CDS
TGTAGAAGTTCATTATCAAT+GGG 0.485791 1_3:+23588303 None:intergenic
AATCTCCCATGGATTCTTTG+CGG 0.489258 1_3:+23588203 None:intergenic
CACCATTGGACTTGGTAGAT+GGG 0.507896 1_3:-23588082 Msa0110640:CDS
ATTACAAGCGAAGAAGTAGA+TGG 0.518156 1_3:-23586523 Msa0110640:CDS
GAACAAATCATATTCAAGAA+TGG 0.524428 1_3:+23588230 None:intergenic
AACTCTTCCCAAATCTCCCA+TGG 0.530624 1_3:+23588192 None:intergenic
TGTAGCACTTACAGATTTGG+TGG 0.543882 1_3:+23587175 None:intergenic
TCGGCACCGCAAAGAATCCA+TGG 0.544845 1_3:-23588209 Msa0110640:CDS
ACAGGTACAGTGACTGCGGC+AGG 0.546185 1_3:+23587707 None:intergenic
GAACCAAGAAACGAATCAAA+CGG 0.553906 1_3:-23587287 Msa0110640:CDS
AAGAGTGACACTTCCCAAGA+TGG 0.562341 1_3:-23587979 Msa0110640:CDS
GATTGCTTATCAATGAATTG+TGG 0.566276 1_3:+23587929 None:intergenic
TCACGCGTAGCTCGCACCAT+TGG 0.571107 1_3:-23588096 Msa0110640:CDS
TGTAGCAGAACAATAATGGT+TGG 0.571144 1_3:-23586624 Msa0110640:intron
TAATACAAAGTCTCAACGTA+AGG 0.571382 1_3:-23587255 Msa0110640:CDS
ACACTTCCCAAGATGGTGGA+TGG 0.575047 1_3:-23587972 Msa0110640:CDS
GCGAGCTACGCGTGAGCTAG+TGG 0.575601 1_3:+23588104 None:intergenic
GTAGCTCGCACCATTGGACT+TGG 0.575679 1_3:-23588090 Msa0110640:CDS
ATGATGATGCTAGTATGTCT+TGG 0.583925 1_3:-23586492 Msa0110640:CDS
TGCTTATCAATGAATTGTGG+AGG 0.585480 1_3:+23587932 None:intergenic
AGCTGCAATGAAAACAACTC+AGG 0.594475 1_3:+23586469 None:intergenic
CCTTATTGGAAGAAGAGTTG+AGG 0.596076 1_3:+23588334 None:intergenic
CCAAGTAATCAACTTAACAA+TGG 0.597996 1_3:-23586577 Msa0110640:CDS
ATTGGACTTGGTAGATGGGA+AGG 0.601702 1_3:-23588078 Msa0110640:CDS
AAAGACAAGAACCAAATCCT+CGG 0.605189 1_3:-23588027 Msa0110640:CDS
TTCCCATCTACCAAGTCCAA+TGG 0.611326 1_3:+23588080 None:intergenic
ATGGTGATATGATTGGGCAA+AGG 0.612759 1_3:+23588249 None:intergenic
TGAAGGATGCTTGATCGAAG+AGG 0.615586 1_3:-23586434 Msa0110640:CDS
CGGCACCGCAAAGAATCCAT+GGG 0.621679 1_3:-23588208 Msa0110640:CDS
AGATGGGAAGGTGAAGACGC+TGG 0.631377 1_3:-23588066 Msa0110640:CDS
AGTGACACTTCCCAAGATGG+TGG 0.639769 1_3:-23587976 Msa0110640:CDS
GGAACTTCCTACTCGTATCG+TGG 0.641732 1_3:-23588168 Msa0110640:CDS
GTAGCACTTACAGATTTGGT+GGG 0.644008 1_3:+23587176 None:intergenic
GAACAATAATGGTTGGTTAG+GGG 0.666558 1_3:-23586617 Msa0110640:CDS
AAACGAATCAAACGGTACTG+GGG 0.701193 1_3:-23587279 Msa0110640:CDS
ACTTACAGGTACAGTGACTG+CGG 0.729652 1_3:+23587703 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAAAATTTGAAAAATAAAT+AGG - chr1_3:23587773-23587792 Msa0110640:CDS 10.0%
!!! CTTTTTTTTTTTTTATAGAA+AGG + chr1_3:23587872-23587891 None:intergenic 10.0%
!! GTAAAATTTGAAAAATAAAT+AGG - chr1_3:23587773-23587792 Msa0110640:CDS 10.0%
!!! CTTTTTTTTTTTTTATAGAA+AGG + chr1_3:23587872-23587891 None:intergenic 10.0%
!!! ATAAAATCTAATCTTTTTAC+CGG + chr1_3:23587110-23587129 None:intergenic 15.0%
!! ATTAAAATAGGAAATTGATT+TGG + chr1_3:23587291-23587310 None:intergenic 15.0%
!!! ATCATTGAAGTATTTTTTTA+AGG - chr1_3:23587320-23587339 Msa0110640:intron 15.0%
!!! TCATTGAAGTATTTTTTTAA+GGG - chr1_3:23587321-23587340 Msa0110640:intron 15.0%
!!! TGTTTTTATCTCAATAAAAT+TGG + chr1_3:23587817-23587836 None:intergenic 15.0%
!!! ATAAAATCTAATCTTTTTAC+CGG + chr1_3:23587110-23587129 None:intergenic 15.0%
!! ATTAAAATAGGAAATTGATT+TGG + chr1_3:23587291-23587310 None:intergenic 15.0%
!!! ATCATTGAAGTATTTTTTTA+AGG - chr1_3:23587320-23587339 Msa0110640:intron 15.0%
!!! TCATTGAAGTATTTTTTTAA+GGG - chr1_3:23587321-23587340 Msa0110640:intron 15.0%
!!! TGTTTTTATCTCAATAAAAT+TGG + chr1_3:23587817-23587836 None:intergenic 15.0%
!!! ATTCTTGAATATGATTTGTT+CGG - chr1_3:23586477-23586496 Msa0110640:CDS 20.0%
!! TAATAAAAGTAGTAACTTAC+AGG + chr1_3:23587019-23587038 None:intergenic 20.0%
!!! TCAAATCTTTTGGTAATTAA+AGG + chr1_3:23587045-23587064 None:intergenic 20.0%
!! TTAATTACCAAAAGATTTGA+TGG - chr1_3:23587045-23587064 Msa0110640:intron 20.0%
!!! TATTGATATTGTTGTTTTTC+CGG - chr1_3:23587088-23587107 Msa0110640:intron 20.0%
!!! AATATTTTGAATGGATAGAA+TGG + chr1_3:23587223-23587242 None:intergenic 20.0%
!! ATCCATTCAAAATATTTCTT+TGG - chr1_3:23587227-23587246 Msa0110640:CDS 20.0%
!!! TTCCAAAGAAATATTTTGAA+TGG + chr1_3:23587232-23587251 None:intergenic 20.0%
!! GATTAGCAAATCATTAAAAT+AGG + chr1_3:23587303-23587322 None:intergenic 20.0%
!! TAAGGAAAAAGAAAAATATG+TGG - chr1_3:23587468-23587487 Msa0110640:intron 20.0%
!! AAAAAGAAAAATATGTGGAA+TGG - chr1_3:23587473-23587492 Msa0110640:intron 20.0%
!! TTACAAATAGGTTATTTGAA+CGG - chr1_3:23587751-23587770 Msa0110640:CDS 20.0%
!!! TCATATGTTTTTCTTACAAA+AGG + chr1_3:23587847-23587866 None:intergenic 20.0%
!! GATTGAAAGATCAATAATAA+GGG + chr1_3:23588044-23588063 None:intergenic 20.0%
!!! ATTCTTGAATATGATTTGTT+CGG - chr1_3:23586477-23586496 Msa0110640:CDS 20.0%
!! TAATAAAAGTAGTAACTTAC+AGG + chr1_3:23587019-23587038 None:intergenic 20.0%
!!! TCAAATCTTTTGGTAATTAA+AGG + chr1_3:23587045-23587064 None:intergenic 20.0%
!! TTAATTACCAAAAGATTTGA+TGG - chr1_3:23587045-23587064 Msa0110640:intron 20.0%
!!! TATTGATATTGTTGTTTTTC+CGG - chr1_3:23587088-23587107 Msa0110640:intron 20.0%
!!! AATATTTTGAATGGATAGAA+TGG + chr1_3:23587223-23587242 None:intergenic 20.0%
!! ATCCATTCAAAATATTTCTT+TGG - chr1_3:23587227-23587246 Msa0110640:CDS 20.0%
!!! TTCCAAAGAAATATTTTGAA+TGG + chr1_3:23587232-23587251 None:intergenic 20.0%
!! GATTAGCAAATCATTAAAAT+AGG + chr1_3:23587303-23587322 None:intergenic 20.0%
!! TAAGGAAAAAGAAAAATATG+TGG - chr1_3:23587468-23587487 Msa0110640:intron 20.0%
!! AAAAAGAAAAATATGTGGAA+TGG - chr1_3:23587473-23587492 Msa0110640:intron 20.0%
!! TTACAAATAGGTTATTTGAA+CGG - chr1_3:23587751-23587770 Msa0110640:CDS 20.0%
!!! TCATATGTTTTTCTTACAAA+AGG + chr1_3:23587847-23587866 None:intergenic 20.0%
!! GATTGAAAGATCAATAATAA+GGG + chr1_3:23588044-23588063 None:intergenic 20.0%
! TGTAGAAGTTCATTATCAAT+GGG + chr1_3:23586405-23586424 None:intergenic 25.0%
! TTGTAGAAGTTCATTATCAA+TGG + chr1_3:23586406-23586425 None:intergenic 25.0%
! GAACAAATCATATTCAAGAA+TGG + chr1_3:23586478-23586497 None:intergenic 25.0%
!!! TTTTGTATCTTGTTTTTTGC+AGG - chr1_3:23586871-23586890 Msa0110640:intron 25.0%
! TCTGCATAGAACATAATTAT+TGG + chr1_3:23586897-23586916 None:intergenic 25.0%
!! ATCTTGTGCAACAATATTTT+TGG + chr1_3:23586951-23586970 None:intergenic 25.0%
!! ACTAAAACCATCAAATCTTT+TGG + chr1_3:23587055-23587074 None:intergenic 25.0%
!!! AACATTGTTCTTTTTCATTC+TGG - chr1_3:23587360-23587379 Msa0110640:intron 25.0%
! CATTGTCTTATAGACAAATA+GGG + chr1_3:23587682-23587701 None:intergenic 25.0%
! TCATTGTCTTATAGACAAAT+AGG + chr1_3:23587683-23587702 None:intergenic 25.0%
! ACAGTAAAACAGTTACAAAT+AGG - chr1_3:23587739-23587758 Msa0110640:CDS 25.0%
! GGATTGAAAGATCAATAATA+AGG + chr1_3:23588045-23588064 None:intergenic 25.0%
! ATATTGTAGCAGAACAATAA+TGG - chr1_3:23588077-23588096 Msa0110640:CDS 25.0%
!!! TAAGTTGATTACTTGGATTT+TGG + chr1_3:23588124-23588143 None:intergenic 25.0%
! AAAAACAAGAATGAAGATGA+TGG - chr1_3:23588152-23588171 Msa0110640:CDS 25.0%
! TAAAACTGATTGGAAATCAT+TGG + chr1_3:23588305-23588324 None:intergenic 25.0%
!!! GATTTCCAATCAGTTTTATA+AGG - chr1_3:23588307-23588326 Msa0110640:CDS 25.0%
! TAAGTCCTTATAAAACTGAT+TGG + chr1_3:23588315-23588334 None:intergenic 25.0%
!! GTTTTATAAGGACTTATTGT+CGG - chr1_3:23588319-23588338 Msa0110640:CDS 25.0%
! TGTAGAAGTTCATTATCAAT+GGG + chr1_3:23586405-23586424 None:intergenic 25.0%
! TTGTAGAAGTTCATTATCAA+TGG + chr1_3:23586406-23586425 None:intergenic 25.0%
! GAACAAATCATATTCAAGAA+TGG + chr1_3:23586478-23586497 None:intergenic 25.0%
!!! TTTTGTATCTTGTTTTTTGC+AGG - chr1_3:23586871-23586890 Msa0110640:intron 25.0%
! TCTGCATAGAACATAATTAT+TGG + chr1_3:23586897-23586916 None:intergenic 25.0%
!! ATCTTGTGCAACAATATTTT+TGG + chr1_3:23586951-23586970 None:intergenic 25.0%
!! ACTAAAACCATCAAATCTTT+TGG + chr1_3:23587055-23587074 None:intergenic 25.0%
!!! AACATTGTTCTTTTTCATTC+TGG - chr1_3:23587360-23587379 Msa0110640:intron 25.0%
! CATTGTCTTATAGACAAATA+GGG + chr1_3:23587682-23587701 None:intergenic 25.0%
! TCATTGTCTTATAGACAAAT+AGG + chr1_3:23587683-23587702 None:intergenic 25.0%
! ACAGTAAAACAGTTACAAAT+AGG - chr1_3:23587739-23587758 Msa0110640:CDS 25.0%
! GGATTGAAAGATCAATAATA+AGG + chr1_3:23588045-23588064 None:intergenic 25.0%
! ATATTGTAGCAGAACAATAA+TGG - chr1_3:23588077-23588096 Msa0110640:CDS 25.0%
!!! TAAGTTGATTACTTGGATTT+TGG + chr1_3:23588124-23588143 None:intergenic 25.0%
! AAAAACAAGAATGAAGATGA+TGG - chr1_3:23588152-23588171 Msa0110640:CDS 25.0%
! TAAAACTGATTGGAAATCAT+TGG + chr1_3:23588305-23588324 None:intergenic 25.0%
!!! GATTTCCAATCAGTTTTATA+AGG - chr1_3:23588307-23588326 Msa0110640:CDS 25.0%
! TAAGTCCTTATAAAACTGAT+TGG + chr1_3:23588315-23588334 None:intergenic 25.0%
!! GTTTTATAAGGACTTATTGT+CGG - chr1_3:23588319-23588338 Msa0110640:CDS 25.0%
!! TGTTGTGAATTTTGTTGTAG+AGG + chr1_3:23586434-23586453 None:intergenic 30.0%
TCAAGAATGGTGATATGATT+GGG + chr1_3:23586465-23586484 None:intergenic 30.0%
TTCAAGAATGGTGATATGAT+TGG + chr1_3:23586466-23586485 None:intergenic 30.0%
GATTGCTTATCAATGAATTG+TGG + chr1_3:23586779-23586798 None:intergenic 30.0%
TTCATTGATAAGCAATCCTT+TGG - chr1_3:23586782-23586801 Msa0110640:intron 30.0%
AATCATGCACCAAATAACTA+GGG + chr1_3:23586848-23586867 None:intergenic 30.0%
AAATCATGCACCAAATAACT+AGG + chr1_3:23586849-23586868 None:intergenic 30.0%
!!! GCAACAATATTTTTGGTTAC+AGG + chr1_3:23586944-23586963 None:intergenic 30.0%
! CATTATCTAATCCTTTTGGA+TGG + chr1_3:23587153-23587172 None:intergenic 30.0%
CAAAAGGATTAGATAATGTG+CGG - chr1_3:23587155-23587174 Msa0110640:intron 30.0%
TGAATGGATAGAATGGATAA+AGG + chr1_3:23587216-23587235 None:intergenic 30.0%
! TTTTTCATTCTGGATCTGTA+GGG - chr1_3:23587370-23587389 Msa0110640:intron 30.0%
TAATACAAAGTCTCAACGTA+AGG - chr1_3:23587450-23587469 Msa0110640:intron 30.0%
ATATGTAGCACTTACAGATT+TGG + chr1_3:23587536-23587555 None:intergenic 30.0%
!! TCGACCTTCACATTTTATTT+AGG - chr1_3:23587946-23587965 Msa0110640:CDS 30.0%
!! CGACCTTCACATTTTATTTA+GGG - chr1_3:23587947-23587966 Msa0110640:CDS 30.0%
AGACCCTAAATAAAATGTGA+AGG + chr1_3:23587953-23587972 None:intergenic 30.0%
CTACAATATGAGAATGAAAG+AGG + chr1_3:23588066-23588085 None:intergenic 30.0%
! AGAACAATAATGGTTGGTTA+GGG - chr1_3:23588087-23588106 Msa0110640:CDS 30.0%
!! CCATTGTTAAGTTGATTACT+TGG + chr1_3:23588131-23588150 None:intergenic 30.0%
CCAAGTAATCAACTTAACAA+TGG - chr1_3:23588128-23588147 Msa0110640:CDS 30.0%
!! TGTTGTGAATTTTGTTGTAG+AGG + chr1_3:23586434-23586453 None:intergenic 30.0%
TCAAGAATGGTGATATGATT+GGG + chr1_3:23586465-23586484 None:intergenic 30.0%
TTCAAGAATGGTGATATGAT+TGG + chr1_3:23586466-23586485 None:intergenic 30.0%
GATTGCTTATCAATGAATTG+TGG + chr1_3:23586779-23586798 None:intergenic 30.0%
TTCATTGATAAGCAATCCTT+TGG - chr1_3:23586782-23586801 Msa0110640:intron 30.0%
AATCATGCACCAAATAACTA+GGG + chr1_3:23586848-23586867 None:intergenic 30.0%
AAATCATGCACCAAATAACT+AGG + chr1_3:23586849-23586868 None:intergenic 30.0%
!!! GCAACAATATTTTTGGTTAC+AGG + chr1_3:23586944-23586963 None:intergenic 30.0%
! CATTATCTAATCCTTTTGGA+TGG + chr1_3:23587153-23587172 None:intergenic 30.0%
CAAAAGGATTAGATAATGTG+CGG - chr1_3:23587155-23587174 Msa0110640:intron 30.0%
TGAATGGATAGAATGGATAA+AGG + chr1_3:23587216-23587235 None:intergenic 30.0%
! TTTTTCATTCTGGATCTGTA+GGG - chr1_3:23587370-23587389 Msa0110640:intron 30.0%
TAATACAAAGTCTCAACGTA+AGG - chr1_3:23587450-23587469 Msa0110640:intron 30.0%
ATATGTAGCACTTACAGATT+TGG + chr1_3:23587536-23587555 None:intergenic 30.0%
!! TCGACCTTCACATTTTATTT+AGG - chr1_3:23587946-23587965 Msa0110640:CDS 30.0%
!! CGACCTTCACATTTTATTTA+GGG - chr1_3:23587947-23587966 Msa0110640:CDS 30.0%
AGACCCTAAATAAAATGTGA+AGG + chr1_3:23587953-23587972 None:intergenic 30.0%
CTACAATATGAGAATGAAAG+AGG + chr1_3:23588066-23588085 None:intergenic 30.0%
! AGAACAATAATGGTTGGTTA+GGG - chr1_3:23588087-23588106 Msa0110640:CDS 30.0%
!! CCATTGTTAAGTTGATTACT+TGG + chr1_3:23588131-23588150 None:intergenic 30.0%
CCAAGTAATCAACTTAACAA+TGG - chr1_3:23588128-23588147 Msa0110640:CDS 30.0%
CTTATTGGAAGAAGAGTTGA+GGG + chr1_3:23586373-23586392 None:intergenic 35.0%
AAAGAATCCATGGGAGATTT+GGG - chr1_3:23586506-23586525 Msa0110640:CDS 35.0%
AGTGGCAGATTTCTTCTTTA+AGG + chr1_3:23586586-23586605 None:intergenic 35.0%
AAAGACAAGAACCAAATCCT+CGG - chr1_3:23586678-23586697 Msa0110640:intron 35.0%
TGCTTATCAATGAATTGTGG+AGG + chr1_3:23586776-23586795 None:intergenic 35.0%
GAATCAAACGCTACAGATAT+TGG + chr1_3:23586821-23586840 None:intergenic 35.0%
GATTCTTAGCCCTAGTTATT+TGG - chr1_3:23586836-23586855 Msa0110640:intron 35.0%
! CGCACATTATCTAATCCTTT+TGG + chr1_3:23587157-23587176 None:intergenic 35.0%
!! CTTTTTCATTCTGGATCTGT+AGG - chr1_3:23587369-23587388 Msa0110640:intron 35.0%
GAACCAAGAAACGAATCAAA+CGG - chr1_3:23587418-23587437 Msa0110640:intron 35.0%
! GCAAGAACAATAGTCTCTTT+TGG + chr1_3:23587499-23587518 None:intergenic 35.0%
ACTAGAGTCAAGACTTGAAA+AGG - chr1_3:23587715-23587734 Msa0110640:CDS 35.0%
CCTGAACATGAAAAAGGTTA+AGG + chr1_3:23587904-23587923 None:intergenic 35.0%
!! CCTTAACCTTTTTCATGTTC+AGG - chr1_3:23587901-23587920 Msa0110640:intron 35.0%
!! TAACCTTTTTCATGTTCAGG+AGG - chr1_3:23587904-23587923 Msa0110640:intron 35.0%
TTTCCTCCTGAACATGAAAA+AGG + chr1_3:23587910-23587929 None:intergenic 35.0%
TGTAGCAGAACAATAATGGT+TGG - chr1_3:23588081-23588100 Msa0110640:CDS 35.0%
! CAGAACAATAATGGTTGGTT+AGG - chr1_3:23588086-23588105 Msa0110640:CDS 35.0%
! GAACAATAATGGTTGGTTAG+GGG - chr1_3:23588088-23588107 Msa0110640:CDS 35.0%
ATCTACTTCTTCGCTTGTAA+TGG + chr1_3:23588183-23588202 None:intergenic 35.0%
ATTACAAGCGAAGAAGTAGA+TGG - chr1_3:23588182-23588201 Msa0110640:CDS 35.0%
! ATGATGATGCTAGTATGTCT+TGG - chr1_3:23588213-23588232 Msa0110640:CDS 35.0%
CAGCTGAGAAAAATGAATGA+AGG - chr1_3:23588254-23588273 Msa0110640:CDS 35.0%
CTTATTGGAAGAAGAGTTGA+GGG + chr1_3:23586373-23586392 None:intergenic 35.0%
AAAGAATCCATGGGAGATTT+GGG - chr1_3:23586506-23586525 Msa0110640:CDS 35.0%
AGTGGCAGATTTCTTCTTTA+AGG + chr1_3:23586586-23586605 None:intergenic 35.0%
AAAGACAAGAACCAAATCCT+CGG - chr1_3:23586678-23586697 Msa0110640:intron 35.0%
TGCTTATCAATGAATTGTGG+AGG + chr1_3:23586776-23586795 None:intergenic 35.0%
GAATCAAACGCTACAGATAT+TGG + chr1_3:23586821-23586840 None:intergenic 35.0%
GATTCTTAGCCCTAGTTATT+TGG - chr1_3:23586836-23586855 Msa0110640:intron 35.0%
! CGCACATTATCTAATCCTTT+TGG + chr1_3:23587157-23587176 None:intergenic 35.0%
!! CTTTTTCATTCTGGATCTGT+AGG - chr1_3:23587369-23587388 Msa0110640:intron 35.0%
GAACCAAGAAACGAATCAAA+CGG - chr1_3:23587418-23587437 Msa0110640:intron 35.0%
! GCAAGAACAATAGTCTCTTT+TGG + chr1_3:23587499-23587518 None:intergenic 35.0%
ACTAGAGTCAAGACTTGAAA+AGG - chr1_3:23587715-23587734 Msa0110640:CDS 35.0%
CCTGAACATGAAAAAGGTTA+AGG + chr1_3:23587904-23587923 None:intergenic 35.0%
!! CCTTAACCTTTTTCATGTTC+AGG - chr1_3:23587901-23587920 Msa0110640:intron 35.0%
!! TAACCTTTTTCATGTTCAGG+AGG - chr1_3:23587904-23587923 Msa0110640:intron 35.0%
TTTCCTCCTGAACATGAAAA+AGG + chr1_3:23587910-23587929 None:intergenic 35.0%
TGTAGCAGAACAATAATGGT+TGG - chr1_3:23588081-23588100 Msa0110640:CDS 35.0%
! CAGAACAATAATGGTTGGTT+AGG - chr1_3:23588086-23588105 Msa0110640:CDS 35.0%
! GAACAATAATGGTTGGTTAG+GGG - chr1_3:23588088-23588107 Msa0110640:CDS 35.0%
ATCTACTTCTTCGCTTGTAA+TGG + chr1_3:23588183-23588202 None:intergenic 35.0%
ATTACAAGCGAAGAAGTAGA+TGG - chr1_3:23588182-23588201 Msa0110640:CDS 35.0%
! ATGATGATGCTAGTATGTCT+TGG - chr1_3:23588213-23588232 Msa0110640:CDS 35.0%
CAGCTGAGAAAAATGAATGA+AGG - chr1_3:23588254-23588273 Msa0110640:CDS 35.0%
CCTTATTGGAAGAAGAGTTG+AGG + chr1_3:23586374-23586393 None:intergenic 40.0%
CCTCAACTCTTCTTCCAATA+AGG - chr1_3:23586371-23586390 Msa0110640:CDS 40.0%
AATGGGTGCGATAACCTTAT+TGG + chr1_3:23586388-23586407 None:intergenic 40.0%
ATGGTGATATGATTGGGCAA+AGG + chr1_3:23586459-23586478 None:intergenic 40.0%
AATCTCCCATGGATTCTTTG+CGG + chr1_3:23586505-23586524 None:intergenic 40.0%
CAAAGAATCCATGGGAGATT+TGG - chr1_3:23586505-23586524 Msa0110640:CDS 40.0%
!!! GTTTTTTCATGCCGAGGATT+TGG + chr1_3:23586692-23586711 None:intergenic 40.0%
!!! GAAAACGTTTTTTCATGCCG+AGG + chr1_3:23586698-23586717 None:intergenic 40.0%
GCTACAGATATTGGAACCTA+GGG + chr1_3:23586812-23586831 None:intergenic 40.0%
CTAACTTCTGTCCATCCAAA+AGG - chr1_3:23587139-23587158 Msa0110640:intron 40.0%
! GTACCGTTTGATTCGTTTCT+TGG + chr1_3:23587424-23587443 None:intergenic 40.0%
AGAAACGAATCAAACGGTAC+TGG - chr1_3:23587424-23587443 Msa0110640:intron 40.0%
GAAACGAATCAAACGGTACT+GGG - chr1_3:23587425-23587444 Msa0110640:intron 40.0%
AAACGAATCAAACGGTACTG+GGG - chr1_3:23587426-23587445 Msa0110640:intron 40.0%
! GTAGCACTTACAGATTTGGT+GGG + chr1_3:23587532-23587551 None:intergenic 40.0%
TGTAGCACTTACAGATTTGG+TGG + chr1_3:23587533-23587552 None:intergenic 40.0%
AGCTGCAATGAAAACAACTC+AGG + chr1_3:23588239-23588258 None:intergenic 40.0%
CCTTATTGGAAGAAGAGTTG+AGG + chr1_3:23586374-23586393 None:intergenic 40.0%
CCTCAACTCTTCTTCCAATA+AGG - chr1_3:23586371-23586390 Msa0110640:CDS 40.0%
AATGGGTGCGATAACCTTAT+TGG + chr1_3:23586388-23586407 None:intergenic 40.0%
ATGGTGATATGATTGGGCAA+AGG + chr1_3:23586459-23586478 None:intergenic 40.0%
AATCTCCCATGGATTCTTTG+CGG + chr1_3:23586505-23586524 None:intergenic 40.0%
CAAAGAATCCATGGGAGATT+TGG - chr1_3:23586505-23586524 Msa0110640:CDS 40.0%
!!! GTTTTTTCATGCCGAGGATT+TGG + chr1_3:23586692-23586711 None:intergenic 40.0%
!!! GAAAACGTTTTTTCATGCCG+AGG + chr1_3:23586698-23586717 None:intergenic 40.0%
GCTACAGATATTGGAACCTA+GGG + chr1_3:23586812-23586831 None:intergenic 40.0%
CTAACTTCTGTCCATCCAAA+AGG - chr1_3:23587139-23587158 Msa0110640:intron 40.0%
! GTACCGTTTGATTCGTTTCT+TGG + chr1_3:23587424-23587443 None:intergenic 40.0%
AGAAACGAATCAAACGGTAC+TGG - chr1_3:23587424-23587443 Msa0110640:intron 40.0%
GAAACGAATCAAACGGTACT+GGG - chr1_3:23587425-23587444 Msa0110640:intron 40.0%
AAACGAATCAAACGGTACTG+GGG - chr1_3:23587426-23587445 Msa0110640:intron 40.0%
! GTAGCACTTACAGATTTGGT+GGG + chr1_3:23587532-23587551 None:intergenic 40.0%
TGTAGCACTTACAGATTTGG+TGG + chr1_3:23587533-23587552 None:intergenic 40.0%
AGCTGCAATGAAAACAACTC+AGG + chr1_3:23588239-23588258 None:intergenic 40.0%
AACTCTTCCCAAATCTCCCA+TGG + chr1_3:23586516-23586535 None:intergenic 45.0%
TGGGAGATTTGGGAAGAGTT+CGG - chr1_3:23586516-23586535 Msa0110640:CDS 45.0%
! GTCTTTTCCACGATACGAGT+AGG + chr1_3:23586547-23586566 None:intergenic 45.0%
! CACCATTGGACTTGGTAGAT+GGG - chr1_3:23586623-23586642 Msa0110640:intron 45.0%
TTCCCATCTACCAAGTCCAA+TGG + chr1_3:23586628-23586647 None:intergenic 45.0%
! ATTGGACTTGGTAGATGGGA+AGG - chr1_3:23586627-23586646 Msa0110640:intron 45.0%
AAGAGTGACACTTCCCAAGA+TGG - chr1_3:23586726-23586745 Msa0110640:intron 45.0%
CAAGATCCATCCACCATCTT+GGG + chr1_3:23586742-23586761 None:intergenic 45.0%
CGCTACAGATATTGGAACCT+AGG + chr1_3:23586813-23586832 None:intergenic 45.0%
TCAGGAACGACTGTCTTTCT+TGG + chr1_3:23586977-23586996 None:intergenic 45.0%
ACTTACAGGTACAGTGACTG+CGG + chr1_3:23587005-23587024 None:intergenic 45.0%
! TGCGGATTATGAACTGTGCT+AGG - chr1_3:23587173-23587192 Msa0110640:intron 45.0%
! GCGGATTATGAACTGTGCTA+GGG - chr1_3:23587174-23587193 Msa0110640:intron 45.0%
TGAAGGATGCTTGATCGAAG+AGG - chr1_3:23588271-23588290 Msa0110640:CDS 45.0%
AACTCTTCCCAAATCTCCCA+TGG + chr1_3:23586516-23586535 None:intergenic 45.0%
TGGGAGATTTGGGAAGAGTT+CGG - chr1_3:23586516-23586535 Msa0110640:CDS 45.0%
! GTCTTTTCCACGATACGAGT+AGG + chr1_3:23586547-23586566 None:intergenic 45.0%
! CACCATTGGACTTGGTAGAT+GGG - chr1_3:23586623-23586642 Msa0110640:intron 45.0%
TTCCCATCTACCAAGTCCAA+TGG + chr1_3:23586628-23586647 None:intergenic 45.0%
! ATTGGACTTGGTAGATGGGA+AGG - chr1_3:23586627-23586646 Msa0110640:intron 45.0%
AAGAGTGACACTTCCCAAGA+TGG - chr1_3:23586726-23586745 Msa0110640:intron 45.0%
CAAGATCCATCCACCATCTT+GGG + chr1_3:23586742-23586761 None:intergenic 45.0%
CGCTACAGATATTGGAACCT+AGG + chr1_3:23586813-23586832 None:intergenic 45.0%
TCAGGAACGACTGTCTTTCT+TGG + chr1_3:23586977-23586996 None:intergenic 45.0%
ACTTACAGGTACAGTGACTG+CGG + chr1_3:23587005-23587024 None:intergenic 45.0%
! TGCGGATTATGAACTGTGCT+AGG - chr1_3:23587173-23587192 Msa0110640:intron 45.0%
! GCGGATTATGAACTGTGCTA+GGG - chr1_3:23587174-23587193 Msa0110640:intron 45.0%
TGAAGGATGCTTGATCGAAG+AGG - chr1_3:23588271-23588290 Msa0110640:CDS 45.0%
GGAACTTCCTACTCGTATCG+TGG - chr1_3:23586537-23586556 Msa0110640:CDS 50.0%
! GCACCATTGGACTTGGTAGA+TGG - chr1_3:23586622-23586641 Msa0110640:CDS 50.0%
AGTGACACTTCCCAAGATGG+TGG - chr1_3:23586729-23586748 Msa0110640:intron 50.0%
!! ACACTTCCCAAGATGGTGGA+TGG - chr1_3:23586733-23586752 Msa0110640:intron 50.0%
GCAAGATCCATCCACCATCT+TGG + chr1_3:23586743-23586762 None:intergenic 50.0%
GCAATCCTTTGGTAAGCCCT+AGG - chr1_3:23586793-23586812 Msa0110640:intron 50.0%
TGGAACCTAGGGCTTACCAA+AGG + chr1_3:23586801-23586820 None:intergenic 50.0%
GGAACTTCCTACTCGTATCG+TGG - chr1_3:23586537-23586556 Msa0110640:CDS 50.0%
! GCACCATTGGACTTGGTAGA+TGG - chr1_3:23586622-23586641 Msa0110640:CDS 50.0%
AGTGACACTTCCCAAGATGG+TGG - chr1_3:23586729-23586748 Msa0110640:intron 50.0%
!! ACACTTCCCAAGATGGTGGA+TGG - chr1_3:23586733-23586752 Msa0110640:intron 50.0%
GCAAGATCCATCCACCATCT+TGG + chr1_3:23586743-23586762 None:intergenic 50.0%
GCAATCCTTTGGTAAGCCCT+AGG - chr1_3:23586793-23586812 Msa0110640:intron 50.0%
TGGAACCTAGGGCTTACCAA+AGG + chr1_3:23586801-23586820 None:intergenic 50.0%
TCGGCACCGCAAAGAATCCA+TGG - chr1_3:23586496-23586515 Msa0110640:CDS 55.0%
CGGCACCGCAAAGAATCCAT+GGG - chr1_3:23586497-23586516 Msa0110640:CDS 55.0%
GTAGCTCGCACCATTGGACT+TGG - chr1_3:23586615-23586634 Msa0110640:CDS 55.0%
AGATGGGAAGGTGAAGACGC+TGG - chr1_3:23586639-23586658 Msa0110640:intron 55.0%
TCGGCACCGCAAAGAATCCA+TGG - chr1_3:23586496-23586515 Msa0110640:CDS 55.0%
CGGCACCGCAAAGAATCCAT+GGG - chr1_3:23586497-23586516 Msa0110640:CDS 55.0%
GTAGCTCGCACCATTGGACT+TGG - chr1_3:23586615-23586634 Msa0110640:CDS 55.0%
AGATGGGAAGGTGAAGACGC+TGG - chr1_3:23586639-23586658 Msa0110640:intron 55.0%
TCACGCGTAGCTCGCACCAT+TGG - chr1_3:23586609-23586628 Msa0110640:CDS 60.0%
ACAGTGACTGCGGCAGGTTC+AGG + chr1_3:23586995-23587014 None:intergenic 60.0%
ACAGGTACAGTGACTGCGGC+AGG + chr1_3:23587001-23587020 None:intergenic 60.0%
TCACGCGTAGCTCGCACCAT+TGG - chr1_3:23586609-23586628 Msa0110640:CDS 60.0%
ACAGTGACTGCGGCAGGTTC+AGG + chr1_3:23586995-23587014 None:intergenic 60.0%
ACAGGTACAGTGACTGCGGC+AGG + chr1_3:23587001-23587020 None:intergenic 60.0%
GCGAGCTACGCGTGAGCTAG+TGG + chr1_3:23586604-23586623 None:intergenic 65.0%
GCGAGCTACGCGTGAGCTAG+TGG + chr1_3:23586604-23586623 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 23586366 23588361 23586366 ID=Msa0110640;Name=Msa0110640
chr1_3 mRNA 23586366 23588361 23586366 ID=Msa0110640-mRNA-1;Parent=Msa0110640;Name=Msa0110640-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|4|0|329
chr1_3 exon 23587924 23588361 23587924 ID=Msa0110640-mRNA-1:exon:8238;Parent=Msa0110640-mRNA-1
chr1_3 exon 23587709 23587834 23587709 ID=Msa0110640-mRNA-1:exon:8237;Parent=Msa0110640-mRNA-1
chr1_3 exon 23587187 23587336 23587187 ID=Msa0110640-mRNA-1:exon:8236;Parent=Msa0110640-mRNA-1
chr1_3 exon 23586366 23586641 23586366 ID=Msa0110640-mRNA-1:exon:8235;Parent=Msa0110640-mRNA-1
chr1_3 CDS 23587924 23588361 23587924 ID=Msa0110640-mRNA-1:cds;Parent=Msa0110640-mRNA-1
chr1_3 CDS 23587709 23587834 23587709 ID=Msa0110640-mRNA-1:cds;Parent=Msa0110640-mRNA-1
chr1_3 CDS 23587187 23587336 23587187 ID=Msa0110640-mRNA-1:cds;Parent=Msa0110640-mRNA-1
chr1_3 CDS 23586366 23586641 23586366 ID=Msa0110640-mRNA-1:cds;Parent=Msa0110640-mRNA-1
Gene Sequence

>Msa0110640

ATGGCCCTCAACTCTTCTTCCAATAAGGTTATCGCACCCATTGATAATGAACTTCTACAACAATTCCTCTACAACAAAATTCACAACAAACCTTTGCCCAATCATATCACCATTCTTGAATATGATTTGTTCGGCACCGCAAAGAATCCATGGGAGATTTGGGAAGAGTTCGGAACTTCCTACTCGTATCGTGGAAAAGACTTATACTTCTTTACAACCTTAAAGAAGAAATCTGCCACTAGCTCACGCGTAGCTCGCACCATTGGACTTGGTAGATGGGAAGGTGAAGACGCTGGAAAAAATATATTGAGCAAAGACAAGAACCAAATCCTCGGCATGAAAAAACGTTTTCGCTTTGAGAAGAGTGACACTTCCCAAGATGGTGGATGGATCTTGCATGAATATAGCCTCCACAATTCATTGATAAGCAATCCTTTGGCCAATAATTATGTTCTATGCAGATTTAGAAAGAATTGCACTCACTTACCTGTAACCAAAAATATTGTTGCACAAGATAAACCAAGAAAGACAGTCGTTCCTGAACCTGCCGCAGTCACTGTACCTGGCAAGAGAAAATATATAATTTATGAAGAACCAAGAAACGAATCAAACGGTACTGGGGTTAATACAAAGTCTCAACGTAAGGAAAAAGAAAAATATGTGGAATGGCCAAAAGAGACTATTGTTCTTGCACTCGAAGCACCCACCAAATCTCAGAACAATAATGGTTGGTTAGGGGAAGATATTGACCAAAATCCAAGTAATCAACTTAACAATGGAAAAAACAAGAATGAAGATGATGGTGATGCCATTACAAGCGAAGAAGTAGATGGCGATGAAGATGATGATGCTAGTATGTCTTGGCCTGAGTTGTTTTCATTGCAGCTGAGAAAAATGAATGAAGGATGCTTGATCGAAGAGGAAGATGTTCCAATGATTTCCAATCAGTTTTATAAGGACTTATTGTCGGAAAATATTAATATAACTTAA

Protein sequence

>Msa0110640

MALNSSSNKVIAPIDNELLQQFLYNKIHNKPLPNHITILEYDLFGTAKNPWEIWEEFGTSYSYRGKDLYFFTTLKKKSATSSRVARTIGLGRWEGEDAGKNILSKDKNQILGMKKRFRFEKSDTSQDGGWILHEYSLHNSLISNPLANNYVLCRFRKNCTHLPVTKNIVAQDKPRKTVVPEPAAVTVPGKRKYIIYEEPRNESNGTGVNTKSQRKEKEKYVEWPKETIVLALEAPTKSQNNNGWLGEDIDQNPSNQLNNGKNKNEDDGDAITSEEVDGDEDDDASMSWPELFSLQLRKMNEGCLIEEEDVPMISNQFYKDLLSENINIT*