Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110670 | XP_003590172.1 | 88.308 | 325 | 32 | 1 | 1 | 319 | 1 | 325 | 0.0 | 577 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110670 | sp|Q9FY93|NAC83_ARATH | 33.793 | 145 | 83 | 5 | 13 | 154 | 22 | 156 | 2.69e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110670 | G7I6N9 | 88.308 | 325 | 32 | 1 | 1 | 319 | 1 | 325 | 0.0 | 577 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0110670 | TF | NAC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110670 | MtrunA17_Chr1g0168571 | 88.308 | 325 | 32 | 1 | 1 | 319 | 1 | 325 | 0.0 | 577 |
| Msa0110670 | MtrunA17_Chr1g0174911 | 54.366 | 355 | 92 | 11 | 1 | 318 | 1 | 322 | 3.13e-107 | 315 |
| Msa0110670 | MtrunA17_Chr7g0274971 | 61.538 | 195 | 63 | 1 | 1 | 183 | 1 | 195 | 9.03e-81 | 244 |
| Msa0110670 | MtrunA17_Chr7g0263931 | 32.903 | 155 | 85 | 6 | 13 | 157 | 19 | 164 | 8.74e-15 | 73.9 |
| Msa0110670 | MtrunA17_Chr7g0214071 | 32.639 | 144 | 85 | 4 | 13 | 154 | 23 | 156 | 1.28e-14 | 72.4 |
| Msa0110670 | MtrunA17_Chr4g0018391 | 31.788 | 151 | 94 | 6 | 13 | 160 | 15 | 159 | 1.50e-13 | 70.5 |
| Msa0110670 | MtrunA17_Chr3g0139331 | 26.486 | 185 | 120 | 6 | 13 | 188 | 19 | 196 | 1.08e-11 | 65.1 |
| Msa0110670 | MtrunA17_Chr5g0398971 | 34.437 | 151 | 86 | 8 | 13 | 157 | 15 | 158 | 1.41e-11 | 64.7 |
| Msa0110670 | MtrunA17_Chr8g0384721 | 35.333 | 150 | 79 | 6 | 13 | 154 | 15 | 154 | 1.42e-11 | 63.9 |
| Msa0110670 | MtrunA17_Chr5g0417791 | 31.373 | 153 | 88 | 6 | 13 | 157 | 11 | 154 | 4.16e-11 | 62.4 |
| Msa0110670 | MtrunA17_Chr6g0481091 | 31.210 | 157 | 94 | 8 | 13 | 162 | 14 | 163 | 6.98e-11 | 61.6 |
| Msa0110670 | MtrunA17_Chr1g0147421 | 30.667 | 150 | 95 | 4 | 13 | 159 | 35 | 178 | 7.46e-11 | 62.4 |
| Msa0110670 | MtrunA17_Chr8g0364791 | 30.065 | 153 | 93 | 8 | 11 | 157 | 12 | 156 | 7.49e-11 | 62.8 |
| Msa0110670 | MtrunA17_Chr3g0109821 | 31.613 | 155 | 90 | 7 | 13 | 160 | 14 | 159 | 7.85e-11 | 63.2 |
| Msa0110670 | MtrunA17_Chr8g0384201 | 30.065 | 153 | 93 | 8 | 11 | 157 | 12 | 156 | 9.37e-11 | 62.4 |
| Msa0110670 | MtrunA17_Chr7g0261411 | 28.472 | 144 | 92 | 5 | 13 | 154 | 18 | 152 | 9.73e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110670 | AT5G62380.2 | 32.026 | 153 | 95 | 6 | 13 | 162 | 15 | 161 | 3.85e-14 | 72.8 |
| Msa0110670 | AT5G62380.1 | 32.026 | 153 | 95 | 6 | 13 | 162 | 15 | 161 | 3.85e-14 | 72.8 |
| Msa0110670 | AT2G24430.2 | 31.544 | 149 | 91 | 6 | 13 | 157 | 24 | 165 | 2.32e-13 | 70.1 |
| Msa0110670 | AT2G24430.1 | 31.544 | 149 | 91 | 6 | 13 | 157 | 24 | 165 | 2.32e-13 | 70.1 |
| Msa0110670 | AT5G13180.1 | 33.793 | 145 | 83 | 5 | 13 | 154 | 22 | 156 | 2.74e-13 | 68.9 |
| Msa0110670 | AT3G10480.2 | 33.121 | 157 | 91 | 8 | 13 | 163 | 35 | 183 | 4.84e-13 | 69.7 |
| Msa0110670 | AT5G08790.1 | 32.620 | 187 | 103 | 8 | 3 | 179 | 5 | 178 | 9.27e-13 | 67.8 |
| Msa0110670 | AT3G10480.1 | 32.911 | 158 | 91 | 8 | 13 | 163 | 35 | 184 | 3.08e-12 | 67.4 |
| Msa0110670 | AT5G63790.1 | 33.540 | 161 | 88 | 6 | 3 | 154 | 48 | 198 | 1.44e-11 | 64.7 |
| Msa0110670 | AT5G63790.2 | 33.540 | 161 | 88 | 6 | 3 | 154 | 58 | 208 | 1.52e-11 | 64.7 |
| Msa0110670 | AT5G66300.1 | 29.747 | 158 | 102 | 6 | 13 | 167 | 20 | 171 | 2.13e-11 | 63.9 |
| Msa0110670 | AT3G17730.1 | 30.061 | 163 | 100 | 8 | 13 | 168 | 14 | 169 | 3.30e-11 | 62.8 |
Find 65 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAATAAGTCCTTATAAAA+TGG | 0.162355 | 1_3:+23616492 | None:intergenic |
| AGTGGCAGATTTCTTCTTTA+AGG | 0.216337 | 1_3:+23618015 | None:intergenic |
| CCTCAATTCTTCTTCCAATA+AGG | 0.222490 | 1_3:-23618227 | Msa0110670:CDS |
| TTCAAGAATGGTGATATTAT+TGG | 0.242234 | 1_3:+23618135 | None:intergenic |
| CAAAGAATCCATGGGAGATT+TGG | 0.252767 | 1_3:-23618093 | Msa0110670:CDS |
| TCTGCATAGAACATAATTAT+TGG | 0.253885 | 1_3:+23617687 | None:intergenic |
| TAAGTTGATTACTTGGATTT+TGG | 0.305325 | 1_3:+23616658 | None:intergenic |
| GCACTATTGGACTTGGTAGA+TGG | 0.308744 | 1_3:-23617976 | Msa0110670:CDS |
| CCAGGAACGATTGTCATTCT+TGG | 0.309932 | 1_3:+23617607 | None:intergenic |
| TAAAATGGATTGGAAATCAT+TGG | 0.335007 | 1_3:+23616507 | None:intergenic |
| TGGGAGATTTGGGAAGAGTT+TGG | 0.336128 | 1_3:-23618082 | Msa0110670:CDS |
| GCAAGAACAAAGTTCTCTTT+TGG | 0.336878 | 1_3:+23617048 | None:intergenic |
| CCATTGTTAAGTTGATTACT+TGG | 0.345697 | 1_3:+23616651 | None:intergenic |
| AGTGGGTGCGATAACCTTAT+TGG | 0.366373 | 1_3:+23618213 | None:intergenic |
| ATATGTAGCACTTACAGATT+TGG | 0.368326 | 1_3:+23617011 | None:intergenic |
| AAAGAATCCATGGGAGATTT+GGG | 0.379921 | 1_3:-23618092 | Msa0110670:CDS |
| TCACGCGTAGTTCGCACTAT+TGG | 0.388612 | 1_3:-23617989 | Msa0110670:CDS |
| TATAGGAGTACAATAATGTT+TGG | 0.388726 | 1_3:-23616698 | Msa0110670:intron |
| GAGTACAATAATGTTTGGTT+GGG | 0.392823 | 1_3:-23616693 | Msa0110670:CDS |
| TTCTTTGATAAGCAATCCTT+TGG | 0.396079 | 1_3:-23617816 | Msa0110670:intron |
| CCAAGAATGACAATCGTTCC+TGG | 0.400269 | 1_3:-23617607 | Msa0110670:CDS |
| TAAAATTCATAACAAACCTT+TGG | 0.414530 | 1_3:-23618158 | Msa0110670:CDS |
| GGAGTACAATAATGTTTGGT+TGG | 0.416706 | 1_3:-23616694 | Msa0110670:CDS |
| TTAAGGTTGTAAAGAAGTAT+AGG | 0.426160 | 1_3:+23618032 | None:intergenic |
| GCAAGATCCATCCACCATCT+TGG | 0.430936 | 1_3:+23617858 | None:intergenic |
| CAAGATCCATCCACCATCTT+GGG | 0.431083 | 1_3:+23617859 | None:intergenic |
| ATTCTTGAATACGATTTGTT+CGG | 0.433061 | 1_3:-23618121 | Msa0110670:CDS |
| ACAGTGATTGCGGCAGGTCC+AGG | 0.448826 | 1_3:+23617589 | None:intergenic |
| CTTATTGGAAGAAGAATTGA+GGG | 0.451784 | 1_3:+23618228 | None:intergenic |
| TAAGTCCTTATAAAATGGAT+TGG | 0.478264 | 1_3:+23616497 | None:intergenic |
| CACTATTGGACTTGGTAGAT+GGG | 0.484248 | 1_3:-23617975 | Msa0110670:CDS |
| AATCTCCCATGGATTCTTTG+CGG | 0.489258 | 1_3:+23618096 | None:intergenic |
| AGTACAATAATGTTTGGTTG+GGG | 0.510246 | 1_3:-23616692 | Msa0110670:CDS |
| CCTTATTGGAAGAAGAATTG+AGG | 0.526520 | 1_3:+23618227 | None:intergenic |
| AACTCTTCCCAAATCTCCCA+TGG | 0.530624 | 1_3:+23618085 | None:intergenic |
| GAACAAATCGTATTCAAGAA+TGG | 0.535727 | 1_3:+23618123 | None:intergenic |
| TGAGACTTTGTATTAACCAC+AGG | 0.541279 | 1_3:+23617102 | None:intergenic |
| TGTAGCACTTACAGATTTGG+TGG | 0.543882 | 1_3:+23617014 | None:intergenic |
| TCGGCACCGCAAAGAATCCA+TGG | 0.544845 | 1_3:-23618102 | Msa0110670:CDS |
| GATTGCTTATCAAAGAATTG+TGG | 0.559456 | 1_3:+23617822 | None:intergenic |
| AAGAGTGACACTTCCCAAGA+TGG | 0.562341 | 1_3:-23617872 | Msa0110670:CDS |
| TTGTAGAAGTTCATCATCAG+TGG | 0.566028 | 1_3:+23618195 | None:intergenic |
| TAATACAAAGTCTCAACGTA+AGG | 0.571382 | 1_3:-23617094 | Msa0110670:CDS |
| ACACTTCCCAAGATGGTGGA+TGG | 0.575047 | 1_3:-23617865 | Msa0110670:CDS |
| ATGATGATGCTAGTATGTCT+TGG | 0.583925 | 1_3:-23616596 | Msa0110670:CDS |
| ATGGTGATATTATTGGCCAA+AGG | 0.586567 | 1_3:+23618142 | None:intergenic |
| TGCTTATCAAAGAATTGTGG+AGG | 0.589131 | 1_3:+23617825 | None:intergenic |
| ACAAGTACAGTGATTGCGGC+AGG | 0.590813 | 1_3:+23617583 | None:intergenic |
| CCAAGTAATCAACTTAACAA+TGG | 0.597996 | 1_3:-23616651 | Msa0110670:CDS |
| ATTGGACTTGGTAGATGGGA+AGG | 0.599219 | 1_3:-23617971 | Msa0110670:CDS |
| AGCTGCAACGAAAACAACTC+AGG | 0.602909 | 1_3:+23616573 | None:intergenic |
| AAAGACAAGAACCAAATCCT+CGG | 0.605189 | 1_3:-23617920 | Msa0110670:CDS |
| GCGAACTACGCGTGAGCTAG+TGG | 0.610979 | 1_3:+23617997 | None:intergenic |
| GTAGTTCGCACTATTGGACT+TGG | 0.612695 | 1_3:-23617983 | Msa0110670:CDS |
| TGTAGAAGTTCATCATCAGT+GGG | 0.615614 | 1_3:+23618196 | None:intergenic |
| CGGCACCGCAAAGAATCCAT+GGG | 0.621679 | 1_3:-23618101 | Msa0110670:CDS |
| AGATGGGAAGGTGAAGACGC+TGG | 0.631377 | 1_3:-23617959 | Msa0110670:CDS |
| AGTGACACTTCCCAAGATGG+TGG | 0.639769 | 1_3:-23617869 | Msa0110670:CDS |
| GTAGCACTTACAGATTTGGT+GGG | 0.644008 | 1_3:+23617015 | None:intergenic |
| ACTTACAAGTACAGTGATTG+CGG | 0.645359 | 1_3:+23617579 | None:intergenic |
| GGAGCTTCTCACTCATATCG+TGG | 0.649333 | 1_3:-23618061 | Msa0110670:CDS |
| GTACAATAATGTTTGGTTGG+GGG | 0.656762 | 1_3:-23616691 | Msa0110670:CDS |
| AAAAGAATCAAACTGTCCTG+TGG | 0.676178 | 1_3:-23617118 | Msa0110670:CDS |
| CAGCTGAGAGAGATGTGTGA+AGG | 0.679441 | 1_3:-23616555 | Msa0110670:CDS |
| TGAAGGATGCTTGATCGAAG+AGG | 0.711175 | 1_3:-23616538 | Msa0110670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATACAATATAGATTTTTTCT+TGG | - | chr1_3:23616954-23616973 | Msa0110670:intron | 15.0% |
| !!! | TACAATATAGATTTTTTCTT+GGG | - | chr1_3:23616955-23616974 | Msa0110670:intron | 15.0% |
| !!! | ATAAAATCTAATCTTTTTAC+TGG | + | chr1_3:23617212-23617231 | None:intergenic | 15.0% |
| !! | AATATTTCAAGAAGATAAAA+AGG | + | chr1_3:23617290-23617309 | None:intergenic | 15.0% |
| !!! | ATACAATATAGATTTTTTCT+TGG | - | chr1_3:23616954-23616973 | Msa0110670:intron | 15.0% |
| !!! | TACAATATAGATTTTTTCTT+GGG | - | chr1_3:23616955-23616974 | Msa0110670:intron | 15.0% |
| !!! | ATAAAATCTAATCTTTTTAC+TGG | + | chr1_3:23617212-23617231 | None:intergenic | 15.0% |
| !! | AATATTTCAAGAAGATAAAA+AGG | + | chr1_3:23617290-23617309 | None:intergenic | 15.0% |
| !!! | TGTTATGAATTTTATTGTAG+AGG | + | chr1_3:23616538-23616557 | None:intergenic | 20.0% |
| !! | TAAAATTCATAACAAACCTT+TGG | - | chr1_3:23616544-23616563 | Msa0110670:CDS | 20.0% |
| !! | GTATATTTGCAAAAAAACTA+GGG | + | chr1_3:23616938-23616957 | None:intergenic | 20.0% |
| !! | TGTATATTTGCAAAAAAACT+AGG | + | chr1_3:23616939-23616958 | None:intergenic | 20.0% |
| !!! | TTATGATTTGATTTTGTATC+TGG | - | chr1_3:23616981-23617000 | Msa0110670:intron | 20.0% |
| !!! | TTTGATGCAAATTATTTCTT+TGG | - | chr1_3:23617364-23617383 | Msa0110670:intron | 20.0% |
| !! | GAGTAGTAAATCATTAAAAT+AGG | + | chr1_3:23617440-23617459 | None:intergenic | 20.0% |
| !!! | TAACATTGTTCTTTTTCATT+TGG | - | chr1_3:23617518-23617537 | Msa0110670:intron | 20.0% |
| !! | TAAGGAAAAAGAAAAATATG+TGG | - | chr1_3:23617626-23617645 | Msa0110670:CDS | 20.0% |
| !! | AAAAAGAAAAATATGTGGAA+TGG | - | chr1_3:23617631-23617650 | Msa0110670:CDS | 20.0% |
| !! | AACAATAAGTCCTTATAAAA+TGG | + | chr1_3:23618213-23618232 | None:intergenic | 20.0% |
| !!! | ATTTTATAAGGACTTATTGT+TGG | - | chr1_3:23618212-23618231 | Msa0110670:CDS | 20.0% |
| !!! | TGTTATGAATTTTATTGTAG+AGG | + | chr1_3:23616538-23616557 | None:intergenic | 20.0% |
| !! | TAAAATTCATAACAAACCTT+TGG | - | chr1_3:23616544-23616563 | Msa0110670:CDS | 20.0% |
| !! | GTATATTTGCAAAAAAACTA+GGG | + | chr1_3:23616938-23616957 | None:intergenic | 20.0% |
| !! | TGTATATTTGCAAAAAAACT+AGG | + | chr1_3:23616939-23616958 | None:intergenic | 20.0% |
| !!! | TTATGATTTGATTTTGTATC+TGG | - | chr1_3:23616981-23617000 | Msa0110670:intron | 20.0% |
| !!! | TTTGATGCAAATTATTTCTT+TGG | - | chr1_3:23617364-23617383 | Msa0110670:intron | 20.0% |
| !! | GAGTAGTAAATCATTAAAAT+AGG | + | chr1_3:23617440-23617459 | None:intergenic | 20.0% |
| !!! | TAACATTGTTCTTTTTCATT+TGG | - | chr1_3:23617518-23617537 | Msa0110670:intron | 20.0% |
| !! | TAAGGAAAAAGAAAAATATG+TGG | - | chr1_3:23617626-23617645 | Msa0110670:CDS | 20.0% |
| !! | AAAAAGAAAAATATGTGGAA+TGG | - | chr1_3:23617631-23617650 | Msa0110670:CDS | 20.0% |
| !! | AACAATAAGTCCTTATAAAA+TGG | + | chr1_3:23618213-23618232 | None:intergenic | 20.0% |
| !!! | ATTTTATAAGGACTTATTGT+TGG | - | chr1_3:23618212-23618231 | Msa0110670:CDS | 20.0% |
| ! | TTCAAGAATGGTGATATTAT+TGG | + | chr1_3:23616570-23616589 | None:intergenic | 25.0% |
| !! | ATTCTTGAATACGATTTGTT+CGG | - | chr1_3:23616581-23616600 | Msa0110670:CDS | 25.0% |
| !! | TTAAGGTTGTAAAGAAGTAT+AGG | + | chr1_3:23616673-23616692 | None:intergenic | 25.0% |
| ! | TCTGCATAGAACATAATTAT+TGG | + | chr1_3:23617018-23617037 | None:intergenic | 25.0% |
| ! | AATCACATGCTTAATTGATT+AGG | + | chr1_3:23617325-23617344 | None:intergenic | 25.0% |
| !!! | TCTTTTTCATTTGGATTTGT+AGG | - | chr1_3:23617527-23617546 | Msa0110670:intron | 25.0% |
| !!! | CTTTTTCATTTGGATTTGTA+GGG | - | chr1_3:23617528-23617547 | Msa0110670:intron | 25.0% |
| !! | AATGAAAGAGCACAATAATA+AGG | + | chr1_3:23617977-23617996 | None:intergenic | 25.0% |
| ! | CTCTTTCATTCTCATATTAT+AGG | - | chr1_3:23617987-23618006 | Msa0110670:CDS | 25.0% |
| !! | TATAGGAGTACAATAATGTT+TGG | - | chr1_3:23618004-23618023 | Msa0110670:CDS | 25.0% |
| !!! | TAAGTTGATTACTTGGATTT+TGG | + | chr1_3:23618047-23618066 | None:intergenic | 25.0% |
| ! | AAAAACAAGATTGAAGTAGA+TGG | - | chr1_3:23618075-23618094 | Msa0110670:CDS | 25.0% |
| !!! | TAAAATGGATTGGAAATCAT+TGG | + | chr1_3:23618198-23618217 | None:intergenic | 25.0% |
| !! | GATTTCCAATCCATTTTATA+AGG | - | chr1_3:23618200-23618219 | Msa0110670:CDS | 25.0% |
| ! | TAAGTCCTTATAAAATGGAT+TGG | + | chr1_3:23618208-23618227 | None:intergenic | 25.0% |
| ! | TTCAAGAATGGTGATATTAT+TGG | + | chr1_3:23616570-23616589 | None:intergenic | 25.0% |
| !! | ATTCTTGAATACGATTTGTT+CGG | - | chr1_3:23616581-23616600 | Msa0110670:CDS | 25.0% |
| !! | TTAAGGTTGTAAAGAAGTAT+AGG | + | chr1_3:23616673-23616692 | None:intergenic | 25.0% |
| ! | TCTGCATAGAACATAATTAT+TGG | + | chr1_3:23617018-23617037 | None:intergenic | 25.0% |
| ! | AATCACATGCTTAATTGATT+AGG | + | chr1_3:23617325-23617344 | None:intergenic | 25.0% |
| !!! | TCTTTTTCATTTGGATTTGT+AGG | - | chr1_3:23617527-23617546 | Msa0110670:intron | 25.0% |
| !!! | CTTTTTCATTTGGATTTGTA+GGG | - | chr1_3:23617528-23617547 | Msa0110670:intron | 25.0% |
| !! | AATGAAAGAGCACAATAATA+AGG | + | chr1_3:23617977-23617996 | None:intergenic | 25.0% |
| ! | CTCTTTCATTCTCATATTAT+AGG | - | chr1_3:23617987-23618006 | Msa0110670:CDS | 25.0% |
| !! | TATAGGAGTACAATAATGTT+TGG | - | chr1_3:23618004-23618023 | Msa0110670:CDS | 25.0% |
| !!! | TAAGTTGATTACTTGGATTT+TGG | + | chr1_3:23618047-23618066 | None:intergenic | 25.0% |
| ! | AAAAACAAGATTGAAGTAGA+TGG | - | chr1_3:23618075-23618094 | Msa0110670:CDS | 25.0% |
| !!! | TAAAATGGATTGGAAATCAT+TGG | + | chr1_3:23618198-23618217 | None:intergenic | 25.0% |
| !! | GATTTCCAATCCATTTTATA+AGG | - | chr1_3:23618200-23618219 | Msa0110670:CDS | 25.0% |
| ! | TAAGTCCTTATAAAATGGAT+TGG | + | chr1_3:23618208-23618227 | None:intergenic | 25.0% |
| CTTATTGGAAGAAGAATTGA+GGG | + | chr1_3:23616477-23616496 | None:intergenic | 30.0% | |
| GAACAAATCGTATTCAAGAA+TGG | + | chr1_3:23616582-23616601 | None:intergenic | 30.0% | |
| GATTGCTTATCAAAGAATTG+TGG | + | chr1_3:23616883-23616902 | None:intergenic | 30.0% | |
| TTCTTTGATAAGCAATCCTT+TGG | - | chr1_3:23616886-23616905 | Msa0110670:intron | 30.0% | |
| !! | GCAACAATATTTTTGCTTAC+AGG | + | chr1_3:23617065-23617084 | None:intergenic | 30.0% |
| ! | AAACCCTAAACAGTGTTTTA+CGG | + | chr1_3:23617254-23617273 | None:intergenic | 30.0% |
| TAATACAAAGTCTCAACGTA+AGG | - | chr1_3:23617608-23617627 | Msa0110670:CDS | 30.0% | |
| ATATGTAGCACTTACAGATT+TGG | + | chr1_3:23617694-23617713 | None:intergenic | 30.0% | |
| GAGTACAATAATGTTTGGTT+GGG | - | chr1_3:23618009-23618028 | Msa0110670:CDS | 30.0% | |
| AGTACAATAATGTTTGGTTG+GGG | - | chr1_3:23618010-23618029 | Msa0110670:CDS | 30.0% | |
| !! | CCATTGTTAAGTTGATTACT+TGG | + | chr1_3:23618054-23618073 | None:intergenic | 30.0% |
| CCAAGTAATCAACTTAACAA+TGG | - | chr1_3:23618051-23618070 | Msa0110670:CDS | 30.0% | |
| CTTATTGGAAGAAGAATTGA+GGG | + | chr1_3:23616477-23616496 | None:intergenic | 30.0% | |
| GAACAAATCGTATTCAAGAA+TGG | + | chr1_3:23616582-23616601 | None:intergenic | 30.0% | |
| GATTGCTTATCAAAGAATTG+TGG | + | chr1_3:23616883-23616902 | None:intergenic | 30.0% | |
| TTCTTTGATAAGCAATCCTT+TGG | - | chr1_3:23616886-23616905 | Msa0110670:intron | 30.0% | |
| !! | GCAACAATATTTTTGCTTAC+AGG | + | chr1_3:23617065-23617084 | None:intergenic | 30.0% |
| ! | AAACCCTAAACAGTGTTTTA+CGG | + | chr1_3:23617254-23617273 | None:intergenic | 30.0% |
| TAATACAAAGTCTCAACGTA+AGG | - | chr1_3:23617608-23617627 | Msa0110670:CDS | 30.0% | |
| ATATGTAGCACTTACAGATT+TGG | + | chr1_3:23617694-23617713 | None:intergenic | 30.0% | |
| GAGTACAATAATGTTTGGTT+GGG | - | chr1_3:23618009-23618028 | Msa0110670:CDS | 30.0% | |
| AGTACAATAATGTTTGGTTG+GGG | - | chr1_3:23618010-23618029 | Msa0110670:CDS | 30.0% | |
| !! | CCATTGTTAAGTTGATTACT+TGG | + | chr1_3:23618054-23618073 | None:intergenic | 30.0% |
| CCAAGTAATCAACTTAACAA+TGG | - | chr1_3:23618051-23618070 | Msa0110670:CDS | 30.0% | |
| CCTTATTGGAAGAAGAATTG+AGG | + | chr1_3:23616478-23616497 | None:intergenic | 35.0% | |
| CCTCAATTCTTCTTCCAATA+AGG | - | chr1_3:23616475-23616494 | Msa0110670:CDS | 35.0% | |
| TGTAGAAGTTCATCATCAGT+GGG | + | chr1_3:23616509-23616528 | None:intergenic | 35.0% | |
| TTGTAGAAGTTCATCATCAG+TGG | + | chr1_3:23616510-23616529 | None:intergenic | 35.0% | |
| ATGGTGATATTATTGGCCAA+AGG | + | chr1_3:23616563-23616582 | None:intergenic | 35.0% | |
| AAAGAATCCATGGGAGATTT+GGG | - | chr1_3:23616610-23616629 | Msa0110670:CDS | 35.0% | |
| AGTGGCAGATTTCTTCTTTA+AGG | + | chr1_3:23616690-23616709 | None:intergenic | 35.0% | |
| AAAGACAAGAACCAAATCCT+CGG | - | chr1_3:23616782-23616801 | Msa0110670:intron | 35.0% | |
| TGCTTATCAAAGAATTGTGG+AGG | + | chr1_3:23616880-23616899 | None:intergenic | 35.0% | |
| AAAACTAGGGCTACAAATCT+TGG | + | chr1_3:23616925-23616944 | None:intergenic | 35.0% | |
| !! | TTTTGTATCTGGTTTCTTGC+AGG | - | chr1_3:23616992-23617011 | Msa0110670:intron | 35.0% |
| ACTTACAAGTACAGTGATTG+CGG | + | chr1_3:23617126-23617145 | None:intergenic | 35.0% | |
| TTTCCCGTAAAACACTGTTT+AGG | - | chr1_3:23617247-23617266 | Msa0110670:intron | 35.0% | |
| TTCCCGTAAAACACTGTTTA+GGG | - | chr1_3:23617248-23617267 | Msa0110670:intron | 35.0% | |
| ! | AACCCTAAACAGTGTTTTAC+GGG | + | chr1_3:23617253-23617272 | None:intergenic | 35.0% |
| ! | GGACAGTTTGATTCTTTTGT+TGG | + | chr1_3:23617582-23617601 | None:intergenic | 35.0% |
| AAAAGAATCAAACTGTCCTG+TGG | - | chr1_3:23617584-23617603 | Msa0110670:intron | 35.0% | |
| TGAGACTTTGTATTAACCAC+AGG | + | chr1_3:23617603-23617622 | None:intergenic | 35.0% | |
| ! | GCAAGAACAAAGTTCTCTTT+TGG | + | chr1_3:23617657-23617676 | None:intergenic | 35.0% |
| GGAGTACAATAATGTTTGGT+TGG | - | chr1_3:23618008-23618027 | Msa0110670:CDS | 35.0% | |
| GTACAATAATGTTTGGTTGG+GGG | - | chr1_3:23618011-23618030 | Msa0110670:CDS | 35.0% | |
| ! | ATGATGATGCTAGTATGTCT+TGG | - | chr1_3:23618106-23618125 | Msa0110670:CDS | 35.0% |
| CCTTATTGGAAGAAGAATTG+AGG | + | chr1_3:23616478-23616497 | None:intergenic | 35.0% | |
| CCTCAATTCTTCTTCCAATA+AGG | - | chr1_3:23616475-23616494 | Msa0110670:CDS | 35.0% | |
| TGTAGAAGTTCATCATCAGT+GGG | + | chr1_3:23616509-23616528 | None:intergenic | 35.0% | |
| TTGTAGAAGTTCATCATCAG+TGG | + | chr1_3:23616510-23616529 | None:intergenic | 35.0% | |
| ATGGTGATATTATTGGCCAA+AGG | + | chr1_3:23616563-23616582 | None:intergenic | 35.0% | |
| AAAGAATCCATGGGAGATTT+GGG | - | chr1_3:23616610-23616629 | Msa0110670:CDS | 35.0% | |
| AGTGGCAGATTTCTTCTTTA+AGG | + | chr1_3:23616690-23616709 | None:intergenic | 35.0% | |
| AAAGACAAGAACCAAATCCT+CGG | - | chr1_3:23616782-23616801 | Msa0110670:intron | 35.0% | |
| TGCTTATCAAAGAATTGTGG+AGG | + | chr1_3:23616880-23616899 | None:intergenic | 35.0% | |
| AAAACTAGGGCTACAAATCT+TGG | + | chr1_3:23616925-23616944 | None:intergenic | 35.0% | |
| !! | TTTTGTATCTGGTTTCTTGC+AGG | - | chr1_3:23616992-23617011 | Msa0110670:intron | 35.0% |
| ACTTACAAGTACAGTGATTG+CGG | + | chr1_3:23617126-23617145 | None:intergenic | 35.0% | |
| TTTCCCGTAAAACACTGTTT+AGG | - | chr1_3:23617247-23617266 | Msa0110670:intron | 35.0% | |
| TTCCCGTAAAACACTGTTTA+GGG | - | chr1_3:23617248-23617267 | Msa0110670:intron | 35.0% | |
| ! | AACCCTAAACAGTGTTTTAC+GGG | + | chr1_3:23617253-23617272 | None:intergenic | 35.0% |
| ! | GGACAGTTTGATTCTTTTGT+TGG | + | chr1_3:23617582-23617601 | None:intergenic | 35.0% |
| AAAAGAATCAAACTGTCCTG+TGG | - | chr1_3:23617584-23617603 | Msa0110670:intron | 35.0% | |
| TGAGACTTTGTATTAACCAC+AGG | + | chr1_3:23617603-23617622 | None:intergenic | 35.0% | |
| ! | GCAAGAACAAAGTTCTCTTT+TGG | + | chr1_3:23617657-23617676 | None:intergenic | 35.0% |
| GGAGTACAATAATGTTTGGT+TGG | - | chr1_3:23618008-23618027 | Msa0110670:CDS | 35.0% | |
| GTACAATAATGTTTGGTTGG+GGG | - | chr1_3:23618011-23618030 | Msa0110670:CDS | 35.0% | |
| ! | ATGATGATGCTAGTATGTCT+TGG | - | chr1_3:23618106-23618125 | Msa0110670:CDS | 35.0% |
| AATCTCCCATGGATTCTTTG+CGG | + | chr1_3:23616609-23616628 | None:intergenic | 40.0% | |
| CAAAGAATCCATGGGAGATT+TGG | - | chr1_3:23616609-23616628 | Msa0110670:CDS | 40.0% | |
| ! | CACTATTGGACTTGGTAGAT+GGG | - | chr1_3:23616727-23616746 | Msa0110670:intron | 40.0% |
| !!! | GTTTTTTCATGCCGAGGATT+TGG | + | chr1_3:23616796-23616815 | None:intergenic | 40.0% |
| !!! | GAAAACGTTTTTTCATGCCG+AGG | + | chr1_3:23616802-23616821 | None:intergenic | 40.0% |
| GCTACAAATCTTGGAACCTA+GGG | + | chr1_3:23616916-23616935 | None:intergenic | 40.0% | |
| CCAAAGCATAACATTCTTGC+AGG | + | chr1_3:23617156-23617175 | None:intergenic | 40.0% | |
| CCTGCAAGAATGTTATGCTT+TGG | - | chr1_3:23617153-23617172 | Msa0110670:CDS | 40.0% | |
| ! | GTAGCACTTACAGATTTGGT+GGG | + | chr1_3:23617690-23617709 | None:intergenic | 40.0% |
| TGTAGCACTTACAGATTTGG+TGG | + | chr1_3:23617691-23617710 | None:intergenic | 40.0% | |
| AATCTCCCATGGATTCTTTG+CGG | + | chr1_3:23616609-23616628 | None:intergenic | 40.0% | |
| CAAAGAATCCATGGGAGATT+TGG | - | chr1_3:23616609-23616628 | Msa0110670:CDS | 40.0% | |
| ! | CACTATTGGACTTGGTAGAT+GGG | - | chr1_3:23616727-23616746 | Msa0110670:intron | 40.0% |
| !!! | GTTTTTTCATGCCGAGGATT+TGG | + | chr1_3:23616796-23616815 | None:intergenic | 40.0% |
| !!! | GAAAACGTTTTTTCATGCCG+AGG | + | chr1_3:23616802-23616821 | None:intergenic | 40.0% |
| GCTACAAATCTTGGAACCTA+GGG | + | chr1_3:23616916-23616935 | None:intergenic | 40.0% | |
| CCAAAGCATAACATTCTTGC+AGG | + | chr1_3:23617156-23617175 | None:intergenic | 40.0% | |
| CCTGCAAGAATGTTATGCTT+TGG | - | chr1_3:23617153-23617172 | Msa0110670:CDS | 40.0% | |
| ! | GTAGCACTTACAGATTTGGT+GGG | + | chr1_3:23617690-23617709 | None:intergenic | 40.0% |
| TGTAGCACTTACAGATTTGG+TGG | + | chr1_3:23617691-23617710 | None:intergenic | 40.0% | |
| AGTGGGTGCGATAACCTTAT+TGG | + | chr1_3:23616492-23616511 | None:intergenic | 45.0% | |
| AACTCTTCCCAAATCTCCCA+TGG | + | chr1_3:23616620-23616639 | None:intergenic | 45.0% | |
| TGGGAGATTTGGGAAGAGTT+TGG | - | chr1_3:23616620-23616639 | Msa0110670:CDS | 45.0% | |
| GTAGTTCGCACTATTGGACT+TGG | - | chr1_3:23616719-23616738 | Msa0110670:intron | 45.0% | |
| ! | GCACTATTGGACTTGGTAGA+TGG | - | chr1_3:23616726-23616745 | Msa0110670:intron | 45.0% |
| ! | ATTGGACTTGGTAGATGGGA+AGG | - | chr1_3:23616731-23616750 | Msa0110670:intron | 45.0% |
| AAGAGTGACACTTCCCAAGA+TGG | - | chr1_3:23616830-23616849 | Msa0110670:intron | 45.0% | |
| CAAGATCCATCCACCATCTT+GGG | + | chr1_3:23616846-23616865 | None:intergenic | 45.0% | |
| GGCTACAAATCTTGGAACCT+AGG | + | chr1_3:23616917-23616936 | None:intergenic | 45.0% | |
| CCAGGAACGATTGTCATTCT+TGG | + | chr1_3:23617098-23617117 | None:intergenic | 45.0% | |
| CCAAGAATGACAATCGTTCC+TGG | - | chr1_3:23617095-23617114 | Msa0110670:CDS | 45.0% | |
| AGCTGCAACGAAAACAACTC+AGG | + | chr1_3:23618132-23618151 | None:intergenic | 45.0% | |
| TGAAGGATGCTTGATCGAAG+AGG | - | chr1_3:23618164-23618183 | Msa0110670:CDS | 45.0% | |
| AGTGGGTGCGATAACCTTAT+TGG | + | chr1_3:23616492-23616511 | None:intergenic | 45.0% | |
| AACTCTTCCCAAATCTCCCA+TGG | + | chr1_3:23616620-23616639 | None:intergenic | 45.0% | |
| TGGGAGATTTGGGAAGAGTT+TGG | - | chr1_3:23616620-23616639 | Msa0110670:CDS | 45.0% | |
| GTAGTTCGCACTATTGGACT+TGG | - | chr1_3:23616719-23616738 | Msa0110670:intron | 45.0% | |
| ! | GCACTATTGGACTTGGTAGA+TGG | - | chr1_3:23616726-23616745 | Msa0110670:intron | 45.0% |
| ! | ATTGGACTTGGTAGATGGGA+AGG | - | chr1_3:23616731-23616750 | Msa0110670:intron | 45.0% |
| AAGAGTGACACTTCCCAAGA+TGG | - | chr1_3:23616830-23616849 | Msa0110670:intron | 45.0% | |
| CAAGATCCATCCACCATCTT+GGG | + | chr1_3:23616846-23616865 | None:intergenic | 45.0% | |
| GGCTACAAATCTTGGAACCT+AGG | + | chr1_3:23616917-23616936 | None:intergenic | 45.0% | |
| CCAGGAACGATTGTCATTCT+TGG | + | chr1_3:23617098-23617117 | None:intergenic | 45.0% | |
| CCAAGAATGACAATCGTTCC+TGG | - | chr1_3:23617095-23617114 | Msa0110670:CDS | 45.0% | |
| AGCTGCAACGAAAACAACTC+AGG | + | chr1_3:23618132-23618151 | None:intergenic | 45.0% | |
| TGAAGGATGCTTGATCGAAG+AGG | - | chr1_3:23618164-23618183 | Msa0110670:CDS | 45.0% | |
| GGAGCTTCTCACTCATATCG+TGG | - | chr1_3:23616641-23616660 | Msa0110670:CDS | 50.0% | |
| TCACGCGTAGTTCGCACTAT+TGG | - | chr1_3:23616713-23616732 | Msa0110670:intron | 50.0% | |
| AGTGACACTTCCCAAGATGG+TGG | - | chr1_3:23616833-23616852 | Msa0110670:intron | 50.0% | |
| !! | ACACTTCCCAAGATGGTGGA+TGG | - | chr1_3:23616837-23616856 | Msa0110670:intron | 50.0% |
| GCAAGATCCATCCACCATCT+TGG | + | chr1_3:23616847-23616866 | None:intergenic | 50.0% | |
| GCAATCCTTTGGTAAGCCCT+AGG | - | chr1_3:23616897-23616916 | Msa0110670:intron | 50.0% | |
| TGGAACCTAGGGCTTACCAA+AGG | + | chr1_3:23616905-23616924 | None:intergenic | 50.0% | |
| ACAAGTACAGTGATTGCGGC+AGG | + | chr1_3:23617122-23617141 | None:intergenic | 50.0% | |
| CAGCTGAGAGAGATGTGTGA+AGG | - | chr1_3:23618147-23618166 | Msa0110670:CDS | 50.0% | |
| GGAGCTTCTCACTCATATCG+TGG | - | chr1_3:23616641-23616660 | Msa0110670:CDS | 50.0% | |
| TCACGCGTAGTTCGCACTAT+TGG | - | chr1_3:23616713-23616732 | Msa0110670:intron | 50.0% | |
| AGTGACACTTCCCAAGATGG+TGG | - | chr1_3:23616833-23616852 | Msa0110670:intron | 50.0% | |
| !! | ACACTTCCCAAGATGGTGGA+TGG | - | chr1_3:23616837-23616856 | Msa0110670:intron | 50.0% |
| GCAAGATCCATCCACCATCT+TGG | + | chr1_3:23616847-23616866 | None:intergenic | 50.0% | |
| GCAATCCTTTGGTAAGCCCT+AGG | - | chr1_3:23616897-23616916 | Msa0110670:intron | 50.0% | |
| TGGAACCTAGGGCTTACCAA+AGG | + | chr1_3:23616905-23616924 | None:intergenic | 50.0% | |
| ACAAGTACAGTGATTGCGGC+AGG | + | chr1_3:23617122-23617141 | None:intergenic | 50.0% | |
| CAGCTGAGAGAGATGTGTGA+AGG | - | chr1_3:23618147-23618166 | Msa0110670:CDS | 50.0% | |
| TCGGCACCGCAAAGAATCCA+TGG | - | chr1_3:23616600-23616619 | Msa0110670:CDS | 55.0% | |
| CGGCACCGCAAAGAATCCAT+GGG | - | chr1_3:23616601-23616620 | Msa0110670:CDS | 55.0% | |
| AGATGGGAAGGTGAAGACGC+TGG | - | chr1_3:23616743-23616762 | Msa0110670:intron | 55.0% | |
| TCGGCACCGCAAAGAATCCA+TGG | - | chr1_3:23616600-23616619 | Msa0110670:CDS | 55.0% | |
| CGGCACCGCAAAGAATCCAT+GGG | - | chr1_3:23616601-23616620 | Msa0110670:CDS | 55.0% | |
| AGATGGGAAGGTGAAGACGC+TGG | - | chr1_3:23616743-23616762 | Msa0110670:intron | 55.0% | |
| GCGAACTACGCGTGAGCTAG+TGG | + | chr1_3:23616708-23616727 | None:intergenic | 60.0% | |
| ACAGTGATTGCGGCAGGTCC+AGG | + | chr1_3:23617116-23617135 | None:intergenic | 60.0% | |
| GCGAACTACGCGTGAGCTAG+TGG | + | chr1_3:23616708-23616727 | None:intergenic | 60.0% | |
| ACAGTGATTGCGGCAGGTCC+AGG | + | chr1_3:23617116-23617135 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 23616470 | 23618254 | 23616470 | ID=Msa0110670;Name=Msa0110670 |
| chr1_3 | mRNA | 23616470 | 23618254 | 23616470 | ID=Msa0110670-mRNA-1;Parent=Msa0110670;Name=Msa0110670-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|4|0|319 |
| chr1_3 | exon | 23617817 | 23618254 | 23617817 | ID=Msa0110670-mRNA-1:exon:8262;Parent=Msa0110670-mRNA-1 |
| chr1_3 | exon | 23617585 | 23617710 | 23617585 | ID=Msa0110670-mRNA-1:exon:8261;Parent=Msa0110670-mRNA-1 |
| chr1_3 | exon | 23617026 | 23617175 | 23617026 | ID=Msa0110670-mRNA-1:exon:8260;Parent=Msa0110670-mRNA-1 |
| chr1_3 | exon | 23616470 | 23616715 | 23616470 | ID=Msa0110670-mRNA-1:exon:8259;Parent=Msa0110670-mRNA-1 |
| chr1_3 | CDS | 23617817 | 23618254 | 23617817 | ID=Msa0110670-mRNA-1:cds;Parent=Msa0110670-mRNA-1 |
| chr1_3 | CDS | 23617585 | 23617710 | 23617585 | ID=Msa0110670-mRNA-1:cds;Parent=Msa0110670-mRNA-1 |
| chr1_3 | CDS | 23617026 | 23617175 | 23617026 | ID=Msa0110670-mRNA-1:cds;Parent=Msa0110670-mRNA-1 |
| chr1_3 | CDS | 23616470 | 23616715 | 23616470 | ID=Msa0110670-mRNA-1:cds;Parent=Msa0110670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
