Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110990 | KEH41184.1 | 61.003 | 359 | 113 | 3 | 4 | 361 | 1 | 333 | 5.86e-142 | 416 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110990 | sp|Q9M8K2|REM21_ARATH | 23.580 | 352 | 217 | 7 | 12 | 361 | 23 | 324 | 1.71e-16 | 82.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110990 | A0A072VGK8 | 61.003 | 359 | 113 | 3 | 4 | 361 | 1 | 333 | 2.80e-142 | 416 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0110990 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110990 | MtrunA17_Chr1g0169171 | 59.259 | 324 | 105 | 3 | 39 | 361 | 3 | 300 | 3.03e-124 | 360 |
| Msa0110990 | MtrunA17_Chr1g0169161 | 93.785 | 177 | 11 | 0 | 190 | 366 | 161 | 337 | 5.68e-123 | 358 |
| Msa0110990 | MtrunA17_Chr1g0169081 | 73.653 | 167 | 41 | 1 | 199 | 362 | 157 | 323 | 6.44e-86 | 263 |
| Msa0110990 | MtrunA17_Chr3g0125151 | 70.400 | 125 | 35 | 1 | 237 | 361 | 1 | 123 | 2.75e-63 | 197 |
| Msa0110990 | MtrunA17_Chr3g0125161 | 73.387 | 124 | 33 | 0 | 1 | 124 | 9 | 132 | 9.87e-59 | 187 |
| Msa0110990 | MtrunA17_Chr1g0154251 | 25.161 | 155 | 112 | 3 | 15 | 168 | 27 | 178 | 3.24e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0110990 | AT3G06160.5 | 23.580 | 352 | 217 | 7 | 12 | 361 | 8 | 309 | 1.35e-17 | 82.8 |
| Msa0110990 | AT3G06160.4 | 23.580 | 352 | 217 | 7 | 12 | 361 | 8 | 309 | 1.35e-17 | 82.8 |
| Msa0110990 | AT3G06160.3 | 23.580 | 352 | 217 | 7 | 12 | 361 | 8 | 309 | 1.35e-17 | 82.8 |
| Msa0110990 | AT3G06160.1 | 23.580 | 352 | 217 | 7 | 12 | 361 | 23 | 324 | 1.73e-17 | 82.8 |
| Msa0110990 | AT3G06160.2 | 23.580 | 352 | 217 | 7 | 12 | 361 | 67 | 368 | 2.51e-17 | 82.8 |
| Msa0110990 | AT5G57720.1 | 22.715 | 361 | 214 | 14 | 3 | 361 | 2 | 299 | 2.20e-13 | 70.5 |
| Msa0110990 | AT5G60140.1 | 22.689 | 357 | 221 | 8 | 14 | 360 | 15 | 326 | 3.22e-13 | 70.5 |
| Msa0110990 | AT3G53310.1 | 29.008 | 131 | 85 | 2 | 4 | 128 | 1 | 129 | 8.95e-13 | 68.6 |
| Msa0110990 | AT3G18960.2 | 27.607 | 163 | 113 | 4 | 14 | 174 | 30 | 189 | 5.98e-11 | 61.6 |
| Msa0110990 | AT3G18960.1 | 35.294 | 102 | 63 | 2 | 14 | 114 | 30 | 129 | 8.54e-11 | 61.6 |
Find 57 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCAGAGTGCTTATCTTTA+AGG | 0.100384 | 1_3:-24274971 | None:intergenic |
| TCAAAACTTACATGCTTTGC+AGG | 0.294940 | 1_3:-24275867 | None:intergenic |
| ACCAAGTTCACAAAAGCATT+TGG | 0.331753 | 1_3:-24275317 | None:intergenic |
| AAAGAATTATACCAATTCAT+TGG | 0.334519 | 1_3:-24276104 | None:intergenic |
| TGAGGAGGAAAATAATAATA+TGG | 0.339726 | 1_3:+24275580 | Msa0110990:CDS |
| TTGCATTGTTAGTCATAGTT+TGG | 0.341438 | 1_3:-24274920 | None:intergenic |
| TAGAGAAGAAAATTGTTTAG+TGG | 0.355645 | 1_3:+24275460 | Msa0110990:CDS |
| CATCAATTTCATCATCTTCA+AGG | 0.360750 | 1_3:-24276021 | None:intergenic |
| TGAACTTGGTGCGTTCAAAA+AGG | 0.361173 | 1_3:+24275330 | Msa0110990:CDS |
| TGATAAGGGTGCACATTGTT+AGG | 0.364925 | 1_3:+24276689 | Msa0110990:CDS |
| GATGGTGATGATGTTGATTA+TGG | 0.366118 | 1_3:+24275623 | Msa0110990:CDS |
| GCAATGAAGTGTGGATTTCC+TGG | 0.373131 | 1_3:-24276061 | None:intergenic |
| CTCTTCCTCTACGATCTCTT+AGG | 0.380260 | 1_3:-24275373 | None:intergenic |
| GGAAGATGAGGAAGAGGAAG+AGG | 0.385448 | 1_3:+24275601 | Msa0110990:CDS |
| CCAAGTTCACAAAAGCATTT+GGG | 0.414978 | 1_3:-24275316 | None:intergenic |
| AAGAATTATACCAATTCATT+GGG | 0.416544 | 1_3:-24276103 | None:intergenic |
| GAGAAGCAATAGAAATGATA+AGG | 0.417868 | 1_3:+24276674 | Msa0110990:CDS |
| TCTTTACAGACCCAATGAAT+TGG | 0.436856 | 1_3:+24276093 | Msa0110990:CDS |
| GACATTGGAAGCAGCTCTGC+AGG | 0.450906 | 1_3:+24275992 | Msa0110990:CDS |
| CATGTCAAAGCGCGTCGTAT+TGG | 0.452247 | 1_3:+24275401 | Msa0110990:CDS |
| TAATATGGAAGATGAGGAAG+AGG | 0.461266 | 1_3:+24275595 | Msa0110990:CDS |
| GAGATCGTAGAGGAAGAGAT+TGG | 0.486399 | 1_3:+24275378 | Msa0110990:CDS |
| ATCAATGTGTGAAAAGATGC+CGG | 0.497263 | 1_3:+24275550 | Msa0110990:CDS |
| TCAATGTGTGAAAAGATGCC+GGG | 0.501346 | 1_3:+24275551 | Msa0110990:CDS |
| TACAAGGAAAATAATAAAAG+TGG | 0.503753 | 1_3:+24275827 | Msa0110990:CDS |
| AATGGCCGAGTCTTGGTGCT+AGG | 0.508826 | 1_3:+24276577 | Msa0110990:CDS |
| AGATAAGCACTCTGAGAGAA+TGG | 0.511759 | 1_3:+24274977 | Msa0110990:CDS |
| CCTTGCAGTGGCAACATACA+AGG | 0.512825 | 1_3:-24276339 | None:intergenic |
| GATGAGGAAGAGGAAGAGGA+TGG | 0.519418 | 1_3:+24275605 | Msa0110990:CDS |
| AAAGATGCCGGGGATGGATG+AGG | 0.521214 | 1_3:+24275562 | Msa0110990:CDS |
| AGAGAGGTCAAATACGTACT+TGG | 0.526584 | 1_3:+24276551 | Msa0110990:CDS |
| AGAAGCAATAGAAATGATAA+GGG | 0.545719 | 1_3:+24276675 | Msa0110990:CDS |
| ATGGCCGAGTCTTGGTGCTA+GGG | 0.545802 | 1_3:+24276578 | Msa0110990:CDS |
| AAGGGTGCACATTGTTAGGA+AGG | 0.551559 | 1_3:+24276693 | Msa0110990:CDS |
| AACAATGCAAAGGAGTATCC+TGG | 0.558136 | 1_3:+24274933 | Msa0110990:CDS |
| AAATAATAATATGGAAGATG+AGG | 0.565051 | 1_3:+24275589 | Msa0110990:CDS |
| ACAGAGTGAAAATGTGTACA+AGG | 0.566220 | 1_3:+24275811 | Msa0110990:CDS |
| GTGTGAAAAGATGCCGGGGA+TGG | 0.569701 | 1_3:+24275556 | Msa0110990:CDS |
| GACGATGAGGGTGATGATGA+GGG | 0.579768 | 1_3:+24275689 | Msa0110990:CDS |
| CCTTGTATGTTGCCACTGCA+AGG | 0.583961 | 1_3:+24276339 | Msa0110990:CDS |
| GCATGTCTTGTGCTGATCTG+TGG | 0.594821 | 1_3:-24276523 | None:intergenic |
| TGACGATGAGGGTGATGATG+AGG | 0.595776 | 1_3:+24275688 | Msa0110990:CDS |
| GCCACCCTAGCACCAAGACT+CGG | 0.602379 | 1_3:-24276582 | None:intergenic |
| GCCGAGTCTTGGTGCTAGGG+TGG | 0.603546 | 1_3:+24276581 | Msa0110990:CDS |
| TGATGATGATGATGCTGAAG+AGG | 0.610168 | 1_3:+24275655 | Msa0110990:CDS |
| ATTAGAATTATACCTTGCAG+TGG | 0.615156 | 1_3:-24276351 | None:intergenic |
| GATGATGATGATGCTGAAGA+GGG | 0.617100 | 1_3:+24275656 | Msa0110990:CDS |
| TGATGATGATATGATGGCAG+AGG | 0.617100 | 1_3:+24275721 | Msa0110990:CDS |
| GGTGATGATAGTGACGATGA+GGG | 0.623737 | 1_3:+24275677 | Msa0110990:CDS |
| AACTATGACTAACAATGCAA+AGG | 0.632234 | 1_3:+24274923 | Msa0110990:CDS |
| GATGCCGGGGATGGATGAGG+AGG | 0.641755 | 1_3:+24275565 | Msa0110990:CDS |
| GGGTGATGATAGTGACGATG+AGG | 0.647049 | 1_3:+24275676 | Msa0110990:CDS |
| ACAAGACATGCCGAAAAGAG+AGG | 0.648151 | 1_3:+24276535 | Msa0110990:CDS |
| GCTGAAATGTACATTCAACC+AGG | 0.656893 | 1_3:+24276043 | Msa0110990:CDS |
| TGTGAACTTGTAATGCGTAA+CGG | 0.682308 | 1_3:+24276652 | Msa0110990:CDS |
| CAATGTGTGAAAAGATGCCG+GGG | 0.703528 | 1_3:+24275552 | Msa0110990:CDS |
| TTTATCCTAAGAGATCGTAG+AGG | 0.735718 | 1_3:+24275368 | Msa0110990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAAATTTTAACATATTGTA+TGG | + | chr1_3:24275147-24275166 | Msa0110990:intron | 15.0% |
| !!! | ATTACCAAATGATTTTTTTT+AGG | + | chr1_3:24275968-24275987 | Msa0110990:intron | 15.0% |
| !!! | TTACCAAATGATTTTTTTTA+GGG | + | chr1_3:24275969-24275988 | Msa0110990:intron | 15.0% |
| !!! | CAAAATTTTAACATATTGTA+TGG | + | chr1_3:24275147-24275166 | Msa0110990:intron | 15.0% |
| !!! | ATTACCAAATGATTTTTTTT+AGG | + | chr1_3:24275968-24275987 | Msa0110990:intron | 15.0% |
| !!! | TTACCAAATGATTTTTTTTA+GGG | + | chr1_3:24275969-24275988 | Msa0110990:intron | 15.0% |
| !! | AAAATAAATTAGATGAAGCA+TGG | - | chr1_3:24275020-24275039 | None:intergenic | 20.0% |
| !!! | TTTTTGCTTTTTGATAAAGT+CGG | + | chr1_3:24275037-24275056 | Msa0110990:intron | 20.0% |
| !! | TTTCAATATGAGTAAAAACA+AGG | - | chr1_3:24275496-24275515 | None:intergenic | 20.0% |
| !! | AAATAATAATATGGAAGATG+AGG | + | chr1_3:24275589-24275608 | Msa0110990:CDS | 20.0% |
| !! | TACAAGGAAAATAATAAAAG+TGG | + | chr1_3:24275827-24275846 | Msa0110990:CDS | 20.0% |
| !!! | TACCAAATGATTTTTTTTAG+GGG | + | chr1_3:24275970-24275989 | Msa0110990:intron | 20.0% |
| !! | AAGAATTATACCAATTCATT+GGG | - | chr1_3:24276106-24276125 | None:intergenic | 20.0% |
| !! | AAAGAATTATACCAATTCAT+TGG | - | chr1_3:24276107-24276126 | None:intergenic | 20.0% |
| !!! | AAATCCTTGATAACATTTTT+CGG | - | chr1_3:24276292-24276311 | None:intergenic | 20.0% |
| !! | AAAATAAATTAGATGAAGCA+TGG | - | chr1_3:24275020-24275039 | None:intergenic | 20.0% |
| !!! | TTTTTGCTTTTTGATAAAGT+CGG | + | chr1_3:24275037-24275056 | Msa0110990:intron | 20.0% |
| !! | TTTCAATATGAGTAAAAACA+AGG | - | chr1_3:24275496-24275515 | None:intergenic | 20.0% |
| !! | AAATAATAATATGGAAGATG+AGG | + | chr1_3:24275589-24275608 | Msa0110990:CDS | 20.0% |
| !! | TACAAGGAAAATAATAAAAG+TGG | + | chr1_3:24275827-24275846 | Msa0110990:CDS | 20.0% |
| !!! | TACCAAATGATTTTTTTTAG+GGG | + | chr1_3:24275970-24275989 | Msa0110990:intron | 20.0% |
| !! | AAGAATTATACCAATTCATT+GGG | - | chr1_3:24276106-24276125 | None:intergenic | 20.0% |
| !! | AAAGAATTATACCAATTCAT+TGG | - | chr1_3:24276107-24276126 | None:intergenic | 20.0% |
| !!! | AAATCCTTGATAACATTTTT+CGG | - | chr1_3:24276292-24276311 | None:intergenic | 20.0% |
| ! | ACTATATGATATGTGAACTT+TGG | + | chr1_3:24275210-24275229 | Msa0110990:intron | 25.0% |
| !!! | AGTTTTATTTTGATGATGGT+TGG | + | chr1_3:24275429-24275448 | Msa0110990:CDS | 25.0% |
| ! | TAGAGAAGAAAATTGTTTAG+TGG | + | chr1_3:24275460-24275479 | Msa0110990:CDS | 25.0% |
| ! | TGAGGAGGAAAATAATAATA+TGG | + | chr1_3:24275580-24275599 | Msa0110990:CDS | 25.0% |
| !!! | TATTTTTTACCATACGCAAA+AGG | + | chr1_3:24276155-24276174 | Msa0110990:intron | 25.0% |
| !! | TTTTCCGAAAAATGTTATCA+AGG | + | chr1_3:24276285-24276304 | Msa0110990:CDS | 25.0% |
| !!! | GCATTCATCCTTTTTTTTTA+TGG | + | chr1_3:24276455-24276474 | Msa0110990:intron | 25.0% |
| ! | ATATCCTGCCATAAAAAAAA+AGG | - | chr1_3:24276466-24276485 | None:intergenic | 25.0% |
| ! | AGAAGCAATAGAAATGATAA+GGG | + | chr1_3:24276675-24276694 | Msa0110990:CDS | 25.0% |
| ! | ACTATATGATATGTGAACTT+TGG | + | chr1_3:24275210-24275229 | Msa0110990:intron | 25.0% |
| !!! | AGTTTTATTTTGATGATGGT+TGG | + | chr1_3:24275429-24275448 | Msa0110990:CDS | 25.0% |
| ! | TAGAGAAGAAAATTGTTTAG+TGG | + | chr1_3:24275460-24275479 | Msa0110990:CDS | 25.0% |
| ! | TGAGGAGGAAAATAATAATA+TGG | + | chr1_3:24275580-24275599 | Msa0110990:CDS | 25.0% |
| !!! | TATTTTTTACCATACGCAAA+AGG | + | chr1_3:24276155-24276174 | Msa0110990:intron | 25.0% |
| !! | TTTTCCGAAAAATGTTATCA+AGG | + | chr1_3:24276285-24276304 | Msa0110990:CDS | 25.0% |
| !!! | GCATTCATCCTTTTTTTTTA+TGG | + | chr1_3:24276455-24276474 | Msa0110990:intron | 25.0% |
| ! | ATATCCTGCCATAAAAAAAA+AGG | - | chr1_3:24276466-24276485 | None:intergenic | 25.0% |
| ! | AGAAGCAATAGAAATGATAA+GGG | + | chr1_3:24276675-24276694 | Msa0110990:CDS | 25.0% |
| TTGCATTGTTAGTCATAGTT+TGG | - | chr1_3:24274923-24274942 | None:intergenic | 30.0% | |
| AACTATGACTAACAATGCAA+AGG | + | chr1_3:24274923-24274942 | Msa0110990:CDS | 30.0% | |
| TTCAAAAAGGAGGGTAATAA+AGG | + | chr1_3:24275343-24275362 | Msa0110990:CDS | 30.0% | |
| !!! | GACGAGTTTTATTTTGATGA+TGG | + | chr1_3:24275425-24275444 | Msa0110990:CDS | 30.0% |
| ! | TGATGATGATGATGATATGA+TGG | + | chr1_3:24275715-24275734 | Msa0110990:CDS | 30.0% |
| GTCCCCTAAAAAAAATCATT+TGG | - | chr1_3:24275975-24275994 | None:intergenic | 30.0% | |
| !!! | TGATTTTTTTTAGGGGACAT+TGG | + | chr1_3:24275977-24275996 | Msa0110990:intron | 30.0% |
| CATCAATTTCATCATCTTCA+AGG | - | chr1_3:24276024-24276043 | None:intergenic | 30.0% | |
| ATTAGAATTATACCTTGCAG+TGG | - | chr1_3:24276354-24276373 | None:intergenic | 30.0% | |
| !!! | TCATCCTTTTTTTTTATGGC+AGG | + | chr1_3:24276459-24276478 | Msa0110990:intron | 30.0% |
| CAAATACGTACTTGGAAAAA+TGG | + | chr1_3:24276559-24276578 | Msa0110990:CDS | 30.0% | |
| GAGAAGCAATAGAAATGATA+AGG | + | chr1_3:24276674-24276693 | Msa0110990:CDS | 30.0% | |
| TTGCATTGTTAGTCATAGTT+TGG | - | chr1_3:24274923-24274942 | None:intergenic | 30.0% | |
| AACTATGACTAACAATGCAA+AGG | + | chr1_3:24274923-24274942 | Msa0110990:CDS | 30.0% | |
| TTCAAAAAGGAGGGTAATAA+AGG | + | chr1_3:24275343-24275362 | Msa0110990:CDS | 30.0% | |
| !!! | GACGAGTTTTATTTTGATGA+TGG | + | chr1_3:24275425-24275444 | Msa0110990:CDS | 30.0% |
| ! | TGATGATGATGATGATATGA+TGG | + | chr1_3:24275715-24275734 | Msa0110990:CDS | 30.0% |
| GTCCCCTAAAAAAAATCATT+TGG | - | chr1_3:24275975-24275994 | None:intergenic | 30.0% | |
| !!! | TGATTTTTTTTAGGGGACAT+TGG | + | chr1_3:24275977-24275996 | Msa0110990:intron | 30.0% |
| CATCAATTTCATCATCTTCA+AGG | - | chr1_3:24276024-24276043 | None:intergenic | 30.0% | |
| ATTAGAATTATACCTTGCAG+TGG | - | chr1_3:24276354-24276373 | None:intergenic | 30.0% | |
| !!! | TCATCCTTTTTTTTTATGGC+AGG | + | chr1_3:24276459-24276478 | Msa0110990:intron | 30.0% |
| CAAATACGTACTTGGAAAAA+TGG | + | chr1_3:24276559-24276578 | Msa0110990:CDS | 30.0% | |
| GAGAAGCAATAGAAATGATA+AGG | + | chr1_3:24276674-24276693 | Msa0110990:CDS | 30.0% | |
| ! | TCTCAGAGTGCTTATCTTTA+AGG | - | chr1_3:24274974-24274993 | None:intergenic | 35.0% |
| ATCATGCAAGTGTACATTTG+AGG | - | chr1_3:24275122-24275141 | None:intergenic | 35.0% | |
| !! | CCAAGTTCACAAAAGCATTT+GGG | - | chr1_3:24275319-24275338 | None:intergenic | 35.0% |
| !! | ACCAAGTTCACAAAAGCATT+TGG | - | chr1_3:24275320-24275339 | None:intergenic | 35.0% |
| TTTATCCTAAGAGATCGTAG+AGG | + | chr1_3:24275368-24275387 | Msa0110990:CDS | 35.0% | |
| ATCAATGTGTGAAAAGATGC+CGG | + | chr1_3:24275550-24275569 | Msa0110990:CDS | 35.0% | |
| TAATATGGAAGATGAGGAAG+AGG | + | chr1_3:24275595-24275614 | Msa0110990:CDS | 35.0% | |
| ! | GATGGTGATGATGTTGATTA+TGG | + | chr1_3:24275623-24275642 | Msa0110990:CDS | 35.0% |
| ACAGAGTGAAAATGTGTACA+AGG | + | chr1_3:24275811-24275830 | Msa0110990:CDS | 35.0% | |
| TCAAAACTTACATGCTTTGC+AGG | - | chr1_3:24275870-24275889 | None:intergenic | 35.0% | |
| ! | CTATGTTTTGCAATGAAGTG+TGG | - | chr1_3:24276073-24276092 | None:intergenic | 35.0% |
| TCTTTACAGACCCAATGAAT+TGG | + | chr1_3:24276093-24276112 | Msa0110990:CDS | 35.0% | |
| ! | CACAATAAACCTTTTGCGTA+TGG | - | chr1_3:24276167-24276186 | None:intergenic | 35.0% |
| ! | TGACATATTTTGTGAAGCAG+AGG | - | chr1_3:24276318-24276337 | None:intergenic | 35.0% |
| GACAACACAATCAGTAAAAC+TGG | - | chr1_3:24276413-24276432 | None:intergenic | 35.0% | |
| ! | ACGTATTTGACCTCTCTTTT+CGG | - | chr1_3:24276548-24276567 | None:intergenic | 35.0% |
| TGTGAACTTGTAATGCGTAA+CGG | + | chr1_3:24276652-24276671 | Msa0110990:CDS | 35.0% | |
| ! | TCTCAGAGTGCTTATCTTTA+AGG | - | chr1_3:24274974-24274993 | None:intergenic | 35.0% |
| ATCATGCAAGTGTACATTTG+AGG | - | chr1_3:24275122-24275141 | None:intergenic | 35.0% | |
| !! | CCAAGTTCACAAAAGCATTT+GGG | - | chr1_3:24275319-24275338 | None:intergenic | 35.0% |
| !! | ACCAAGTTCACAAAAGCATT+TGG | - | chr1_3:24275320-24275339 | None:intergenic | 35.0% |
| TTTATCCTAAGAGATCGTAG+AGG | + | chr1_3:24275368-24275387 | Msa0110990:CDS | 35.0% | |
| ATCAATGTGTGAAAAGATGC+CGG | + | chr1_3:24275550-24275569 | Msa0110990:CDS | 35.0% | |
| TAATATGGAAGATGAGGAAG+AGG | + | chr1_3:24275595-24275614 | Msa0110990:CDS | 35.0% | |
| ! | GATGGTGATGATGTTGATTA+TGG | + | chr1_3:24275623-24275642 | Msa0110990:CDS | 35.0% |
| ACAGAGTGAAAATGTGTACA+AGG | + | chr1_3:24275811-24275830 | Msa0110990:CDS | 35.0% | |
| TCAAAACTTACATGCTTTGC+AGG | - | chr1_3:24275870-24275889 | None:intergenic | 35.0% | |
| ! | CTATGTTTTGCAATGAAGTG+TGG | - | chr1_3:24276073-24276092 | None:intergenic | 35.0% |
| TCTTTACAGACCCAATGAAT+TGG | + | chr1_3:24276093-24276112 | Msa0110990:CDS | 35.0% | |
| ! | CACAATAAACCTTTTGCGTA+TGG | - | chr1_3:24276167-24276186 | None:intergenic | 35.0% |
| ! | TGACATATTTTGTGAAGCAG+AGG | - | chr1_3:24276318-24276337 | None:intergenic | 35.0% |
| GACAACACAATCAGTAAAAC+TGG | - | chr1_3:24276413-24276432 | None:intergenic | 35.0% | |
| ! | ACGTATTTGACCTCTCTTTT+CGG | - | chr1_3:24276548-24276567 | None:intergenic | 35.0% |
| TGTGAACTTGTAATGCGTAA+CGG | + | chr1_3:24276652-24276671 | Msa0110990:CDS | 35.0% | |
| !! | AACAATGCAAAGGAGTATCC+TGG | + | chr1_3:24274933-24274952 | Msa0110990:CDS | 40.0% |
| ! | AGGAAGACTTTGAAAAAGCC+AGG | - | chr1_3:24274954-24274973 | None:intergenic | 40.0% |
| ! | AGATAAGCACTCTGAGAGAA+TGG | + | chr1_3:24274977-24274996 | Msa0110990:CDS | 40.0% |
| ! | CATTTGGGATAAGCTGCAAT+AGG | - | chr1_3:24275304-24275323 | None:intergenic | 40.0% |
| ! | CCCAAATGCTTTTGTGAACT+TGG | + | chr1_3:24275316-24275335 | Msa0110990:CDS | 40.0% |
| !! | TGAACTTGGTGCGTTCAAAA+AGG | + | chr1_3:24275330-24275349 | Msa0110990:CDS | 40.0% |
| TCAATGTGTGAAAAGATGCC+GGG | + | chr1_3:24275551-24275570 | Msa0110990:CDS | 40.0% | |
| ! | TGATGATGATGATGCTGAAG+AGG | + | chr1_3:24275655-24275674 | Msa0110990:CDS | 40.0% |
| ! | GATGATGATGATGCTGAAGA+GGG | + | chr1_3:24275656-24275675 | Msa0110990:CDS | 40.0% |
| ! | TGATGATGATATGATGGCAG+AGG | + | chr1_3:24275721-24275740 | Msa0110990:CDS | 40.0% |
| GCTGAAATGTACATTCAACC+AGG | + | chr1_3:24276043-24276062 | Msa0110990:CDS | 40.0% | |
| AGAGAGGTCAAATACGTACT+TGG | + | chr1_3:24276551-24276570 | Msa0110990:CDS | 40.0% | |
| ! | TGATAAGGGTGCACATTGTT+AGG | + | chr1_3:24276689-24276708 | Msa0110990:CDS | 40.0% |
| !! | AACAATGCAAAGGAGTATCC+TGG | + | chr1_3:24274933-24274952 | Msa0110990:CDS | 40.0% |
| ! | AGGAAGACTTTGAAAAAGCC+AGG | - | chr1_3:24274954-24274973 | None:intergenic | 40.0% |
| ! | AGATAAGCACTCTGAGAGAA+TGG | + | chr1_3:24274977-24274996 | Msa0110990:CDS | 40.0% |
| ! | CATTTGGGATAAGCTGCAAT+AGG | - | chr1_3:24275304-24275323 | None:intergenic | 40.0% |
| ! | CCCAAATGCTTTTGTGAACT+TGG | + | chr1_3:24275316-24275335 | Msa0110990:CDS | 40.0% |
| !! | TGAACTTGGTGCGTTCAAAA+AGG | + | chr1_3:24275330-24275349 | Msa0110990:CDS | 40.0% |
| TCAATGTGTGAAAAGATGCC+GGG | + | chr1_3:24275551-24275570 | Msa0110990:CDS | 40.0% | |
| ! | TGATGATGATGATGCTGAAG+AGG | + | chr1_3:24275655-24275674 | Msa0110990:CDS | 40.0% |
| ! | GATGATGATGATGCTGAAGA+GGG | + | chr1_3:24275656-24275675 | Msa0110990:CDS | 40.0% |
| ! | TGATGATGATATGATGGCAG+AGG | + | chr1_3:24275721-24275740 | Msa0110990:CDS | 40.0% |
| GCTGAAATGTACATTCAACC+AGG | + | chr1_3:24276043-24276062 | Msa0110990:CDS | 40.0% | |
| AGAGAGGTCAAATACGTACT+TGG | + | chr1_3:24276551-24276570 | Msa0110990:CDS | 40.0% | |
| ! | TGATAAGGGTGCACATTGTT+AGG | + | chr1_3:24276689-24276708 | Msa0110990:CDS | 40.0% |
| !! | ACTTGGTGCGTTCAAAAAGG+AGG | + | chr1_3:24275333-24275352 | Msa0110990:CDS | 45.0% |
| ! | CTTGGTGCGTTCAAAAAGGA+GGG | + | chr1_3:24275334-24275353 | Msa0110990:CDS | 45.0% |
| CTCTTCCTCTACGATCTCTT+AGG | - | chr1_3:24275376-24275395 | None:intergenic | 45.0% | |
| GAGATCGTAGAGGAAGAGAT+TGG | + | chr1_3:24275378-24275397 | Msa0110990:CDS | 45.0% | |
| CAATGTGTGAAAAGATGCCG+GGG | + | chr1_3:24275552-24275571 | Msa0110990:CDS | 45.0% | |
| ! | GGTGATGATAGTGACGATGA+GGG | + | chr1_3:24275677-24275696 | Msa0110990:CDS | 45.0% |
| GCAATGAAGTGTGGATTTCC+TGG | - | chr1_3:24276064-24276083 | None:intergenic | 45.0% | |
| ACAAGACATGCCGAAAAGAG+AGG | + | chr1_3:24276535-24276554 | Msa0110990:CDS | 45.0% | |
| TTGGAAAAATGGCCGAGTCT+TGG | + | chr1_3:24276570-24276589 | Msa0110990:CDS | 45.0% | |
| ! | AAGGGTGCACATTGTTAGGA+AGG | + | chr1_3:24276693-24276712 | Msa0110990:CDS | 45.0% |
| !! | ACTTGGTGCGTTCAAAAAGG+AGG | + | chr1_3:24275333-24275352 | Msa0110990:CDS | 45.0% |
| ! | CTTGGTGCGTTCAAAAAGGA+GGG | + | chr1_3:24275334-24275353 | Msa0110990:CDS | 45.0% |
| CTCTTCCTCTACGATCTCTT+AGG | - | chr1_3:24275376-24275395 | None:intergenic | 45.0% | |
| GAGATCGTAGAGGAAGAGAT+TGG | + | chr1_3:24275378-24275397 | Msa0110990:CDS | 45.0% | |
| CAATGTGTGAAAAGATGCCG+GGG | + | chr1_3:24275552-24275571 | Msa0110990:CDS | 45.0% | |
| ! | GGTGATGATAGTGACGATGA+GGG | + | chr1_3:24275677-24275696 | Msa0110990:CDS | 45.0% |
| GCAATGAAGTGTGGATTTCC+TGG | - | chr1_3:24276064-24276083 | None:intergenic | 45.0% | |
| ACAAGACATGCCGAAAAGAG+AGG | + | chr1_3:24276535-24276554 | Msa0110990:CDS | 45.0% | |
| TTGGAAAAATGGCCGAGTCT+TGG | + | chr1_3:24276570-24276589 | Msa0110990:CDS | 45.0% | |
| ! | AAGGGTGCACATTGTTAGGA+AGG | + | chr1_3:24276693-24276712 | Msa0110990:CDS | 45.0% |
| CATGTCAAAGCGCGTCGTAT+TGG | + | chr1_3:24275401-24275420 | Msa0110990:CDS | 50.0% | |
| ! | TTTTCCTCCTCATCCATCCC+CGG | - | chr1_3:24275572-24275591 | None:intergenic | 50.0% |
| GGAAGATGAGGAAGAGGAAG+AGG | + | chr1_3:24275601-24275620 | Msa0110990:CDS | 50.0% | |
| GATGAGGAAGAGGAAGAGGA+TGG | + | chr1_3:24275605-24275624 | Msa0110990:CDS | 50.0% | |
| ! | GGGTGATGATAGTGACGATG+AGG | + | chr1_3:24275676-24275695 | Msa0110990:CDS | 50.0% |
| ! | TGACGATGAGGGTGATGATG+AGG | + | chr1_3:24275688-24275707 | Msa0110990:CDS | 50.0% |
| ! | GACGATGAGGGTGATGATGA+GGG | + | chr1_3:24275689-24275708 | Msa0110990:CDS | 50.0% |
| CCTTGCAGTGGCAACATACA+AGG | - | chr1_3:24276342-24276361 | None:intergenic | 50.0% | |
| CCTTGTATGTTGCCACTGCA+AGG | + | chr1_3:24276339-24276358 | Msa0110990:CDS | 50.0% | |
| ! | GCATGTCTTGTGCTGATCTG+TGG | - | chr1_3:24276526-24276545 | None:intergenic | 50.0% |
| CATGTCAAAGCGCGTCGTAT+TGG | + | chr1_3:24275401-24275420 | Msa0110990:CDS | 50.0% | |
| ! | TTTTCCTCCTCATCCATCCC+CGG | - | chr1_3:24275572-24275591 | None:intergenic | 50.0% |
| GGAAGATGAGGAAGAGGAAG+AGG | + | chr1_3:24275601-24275620 | Msa0110990:CDS | 50.0% | |
| GATGAGGAAGAGGAAGAGGA+TGG | + | chr1_3:24275605-24275624 | Msa0110990:CDS | 50.0% | |
| ! | GGGTGATGATAGTGACGATG+AGG | + | chr1_3:24275676-24275695 | Msa0110990:CDS | 50.0% |
| ! | TGACGATGAGGGTGATGATG+AGG | + | chr1_3:24275688-24275707 | Msa0110990:CDS | 50.0% |
| ! | GACGATGAGGGTGATGATGA+GGG | + | chr1_3:24275689-24275708 | Msa0110990:CDS | 50.0% |
| CCTTGCAGTGGCAACATACA+AGG | - | chr1_3:24276342-24276361 | None:intergenic | 50.0% | |
| CCTTGTATGTTGCCACTGCA+AGG | + | chr1_3:24276339-24276358 | Msa0110990:CDS | 50.0% | |
| ! | GCATGTCTTGTGCTGATCTG+TGG | - | chr1_3:24276526-24276545 | None:intergenic | 50.0% |
| GTGTGAAAAGATGCCGGGGA+TGG | + | chr1_3:24275556-24275575 | Msa0110990:CDS | 55.0% | |
| AAAGATGCCGGGGATGGATG+AGG | + | chr1_3:24275562-24275581 | Msa0110990:CDS | 55.0% | |
| GACATTGGAAGCAGCTCTGC+AGG | + | chr1_3:24275992-24276011 | Msa0110990:CDS | 55.0% | |
| !! | AATGGCCGAGTCTTGGTGCT+AGG | + | chr1_3:24276577-24276596 | Msa0110990:CDS | 55.0% |
| !! | ATGGCCGAGTCTTGGTGCTA+GGG | + | chr1_3:24276578-24276597 | Msa0110990:CDS | 55.0% |
| GTGTGAAAAGATGCCGGGGA+TGG | + | chr1_3:24275556-24275575 | Msa0110990:CDS | 55.0% | |
| AAAGATGCCGGGGATGGATG+AGG | + | chr1_3:24275562-24275581 | Msa0110990:CDS | 55.0% | |
| GACATTGGAAGCAGCTCTGC+AGG | + | chr1_3:24275992-24276011 | Msa0110990:CDS | 55.0% | |
| !! | AATGGCCGAGTCTTGGTGCT+AGG | + | chr1_3:24276577-24276596 | Msa0110990:CDS | 55.0% |
| !! | ATGGCCGAGTCTTGGTGCTA+GGG | + | chr1_3:24276578-24276597 | Msa0110990:CDS | 55.0% |
| GCCACCCTAGCACCAAGACT+CGG | - | chr1_3:24276585-24276604 | None:intergenic | 60.0% | |
| GCCACCCTAGCACCAAGACT+CGG | - | chr1_3:24276585-24276604 | None:intergenic | 60.0% | |
| GATGCCGGGGATGGATGAGG+AGG | + | chr1_3:24275565-24275584 | Msa0110990:CDS | 65.0% | |
| !! | GCCGAGTCTTGGTGCTAGGG+TGG | + | chr1_3:24276581-24276600 | Msa0110990:CDS | 65.0% |
| GATGCCGGGGATGGATGAGG+AGG | + | chr1_3:24275565-24275584 | Msa0110990:CDS | 65.0% | |
| !! | GCCGAGTCTTGGTGCTAGGG+TGG | + | chr1_3:24276581-24276600 | Msa0110990:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 24274918 | 24276729 | 24274918 | ID=Msa0110990;Name=Msa0110990 |
| chr1_3 | mRNA | 24274918 | 24276729 | 24274918 | ID=Msa0110990-mRNA-1;Parent=Msa0110990;Name=Msa0110990-mRNA-1;_AED=0.14;_eAED=0.18;_QI=0|0|0|1|1|1|5|0|366 |
| chr1_3 | exon | 24274918 | 24274998 | 24274918 | ID=Msa0110990-mRNA-1:exon:8401;Parent=Msa0110990-mRNA-1 |
| chr1_3 | exon | 24275311 | 24275878 | 24275311 | ID=Msa0110990-mRNA-1:exon:8402;Parent=Msa0110990-mRNA-1 |
| chr1_3 | exon | 24275990 | 24276114 | 24275990 | ID=Msa0110990-mRNA-1:exon:8403;Parent=Msa0110990-mRNA-1 |
| chr1_3 | exon | 24276283 | 24276360 | 24276283 | ID=Msa0110990-mRNA-1:exon:8404;Parent=Msa0110990-mRNA-1 |
| chr1_3 | exon | 24276481 | 24276729 | 24276481 | ID=Msa0110990-mRNA-1:exon:8405;Parent=Msa0110990-mRNA-1 |
| chr1_3 | CDS | 24274918 | 24274998 | 24274918 | ID=Msa0110990-mRNA-1:cds;Parent=Msa0110990-mRNA-1 |
| chr1_3 | CDS | 24275311 | 24275878 | 24275311 | ID=Msa0110990-mRNA-1:cds;Parent=Msa0110990-mRNA-1 |
| chr1_3 | CDS | 24275990 | 24276114 | 24275990 | ID=Msa0110990-mRNA-1:cds;Parent=Msa0110990-mRNA-1 |
| chr1_3 | CDS | 24276283 | 24276360 | 24276283 | ID=Msa0110990-mRNA-1:cds;Parent=Msa0110990-mRNA-1 |
| chr1_3 | CDS | 24276481 | 24276729 | 24276481 | ID=Msa0110990-mRNA-1:cds;Parent=Msa0110990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
