Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112450 | RHN78877.1 | 90.404 | 198 | 17 | 1 | 1 | 196 | 1 | 198 | 5.72e-109 | 320 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112450 | sp|Q9ZWS9|ARR3_ARATH | 59.901 | 202 | 60 | 5 | 4 | 188 | 29 | 226 | 7.27e-72 | 220 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112450 | A0A396JVZ4 | 90.404 | 198 | 17 | 1 | 1 | 196 | 1 | 198 | 2.73e-109 | 320 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0112450 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112450 | MtrunA17_Chr1g0170741 | 90.404 | 198 | 17 | 1 | 1 | 196 | 1 | 198 | 5.26e-113 | 320 |
| Msa0112450 | MtrunA17_Chr5g0414931 | 67.932 | 237 | 35 | 4 | 1 | 196 | 1 | 237 | 2.36e-90 | 264 |
| Msa0112450 | MtrunA17_Chr4g0059571 | 60.000 | 180 | 66 | 2 | 3 | 179 | 21 | 197 | 1.15e-64 | 198 |
| Msa0112450 | MtrunA17_Chr3g0118211 | 61.006 | 159 | 56 | 2 | 7 | 162 | 22 | 177 | 1.01e-60 | 187 |
| Msa0112450 | MtrunA17_Chr7g0256551 | 51.813 | 193 | 78 | 3 | 7 | 184 | 8 | 200 | 1.73e-56 | 178 |
| Msa0112450 | MtrunA17_Chr3g0082861 | 56.129 | 155 | 59 | 2 | 7 | 152 | 3 | 157 | 1.52e-52 | 166 |
| Msa0112450 | MtrunA17_Chr8g0352871 | 59.155 | 142 | 53 | 2 | 7 | 143 | 8 | 149 | 6.77e-51 | 162 |
| Msa0112450 | MtrunA17_Chr3g0128691 | 58.696 | 138 | 50 | 3 | 4 | 138 | 14 | 147 | 9.81e-50 | 158 |
| Msa0112450 | MtrunA17_Chr3g0124861 | 50.676 | 148 | 57 | 3 | 6 | 138 | 20 | 166 | 8.31e-43 | 143 |
| Msa0112450 | MtrunA17_Chr4g0021731 | 59.756 | 82 | 30 | 2 | 7 | 88 | 10 | 88 | 6.71e-25 | 93.2 |
| Msa0112450 | MtrunA17_Chr4g0030271 | 35.075 | 134 | 75 | 2 | 8 | 141 | 89 | 210 | 1.70e-17 | 79.7 |
| Msa0112450 | MtrunA17_Chr3g0127941 | 29.932 | 147 | 88 | 2 | 8 | 151 | 56 | 190 | 5.09e-17 | 78.6 |
| Msa0112450 | MtrunA17_Chr7g0276361 | 31.757 | 148 | 87 | 3 | 14 | 161 | 22 | 155 | 4.97e-16 | 75.5 |
| Msa0112450 | MtrunA17_Chr8g0345901 | 30.882 | 136 | 82 | 1 | 8 | 143 | 36 | 159 | 4.00e-14 | 70.1 |
| Msa0112450 | MtrunA17_Chr1g0181811 | 28.788 | 132 | 82 | 1 | 10 | 141 | 87 | 206 | 2.22e-13 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112450 | AT1G59940.1 | 59.901 | 202 | 60 | 5 | 4 | 188 | 29 | 226 | 7.39e-73 | 220 |
| Msa0112450 | AT1G59940.2 | 59.901 | 202 | 60 | 5 | 4 | 188 | 121 | 318 | 1.85e-71 | 219 |
| Msa0112450 | AT1G10470.3 | 55.752 | 226 | 57 | 6 | 6 | 192 | 18 | 239 | 5.01e-70 | 213 |
| Msa0112450 | AT1G10470.1 | 55.752 | 226 | 57 | 6 | 6 | 192 | 32 | 253 | 1.11e-69 | 213 |
| Msa0112450 | AT3G48100.1 | 65.563 | 151 | 50 | 1 | 8 | 158 | 25 | 173 | 1.15e-63 | 195 |
| Msa0112450 | AT5G62920.1 | 72.656 | 128 | 32 | 1 | 8 | 135 | 25 | 149 | 4.41e-61 | 188 |
| Msa0112450 | AT1G74890.1 | 71.318 | 129 | 34 | 1 | 7 | 135 | 17 | 142 | 3.68e-59 | 184 |
| Msa0112450 | AT1G19050.1 | 65.441 | 136 | 44 | 1 | 7 | 142 | 23 | 155 | 2.50e-58 | 182 |
| Msa0112450 | AT2G40670.1 | 59.259 | 135 | 55 | 0 | 4 | 138 | 25 | 159 | 1.76e-54 | 171 |
| Msa0112450 | AT3G57040.2 | 58.993 | 139 | 50 | 2 | 7 | 138 | 8 | 146 | 2.66e-53 | 170 |
| Msa0112450 | AT3G57040.1 | 58.993 | 139 | 50 | 2 | 7 | 138 | 8 | 146 | 2.66e-53 | 170 |
| Msa0112450 | AT3G56380.1 | 61.194 | 134 | 48 | 2 | 6 | 138 | 18 | 148 | 2.67e-53 | 167 |
| Msa0112450 | AT2G41310.1 | 59.441 | 143 | 52 | 2 | 1 | 138 | 3 | 144 | 6.58e-53 | 169 |
| Msa0112450 | AT2G40670.2 | 58.824 | 136 | 55 | 1 | 4 | 138 | 25 | 160 | 9.10e-53 | 167 |
| Msa0112450 | AT3G56380.2 | 60.741 | 135 | 48 | 3 | 6 | 138 | 18 | 149 | 1.77e-51 | 163 |
| Msa0112450 | AT1G10470.2 | 56.044 | 91 | 30 | 6 | 70 | 155 | 17 | 102 | 2.02e-23 | 92.4 |
| Msa0112450 | AT2G46790.3 | 31.343 | 134 | 80 | 2 | 8 | 141 | 37 | 158 | 2.46e-15 | 73.9 |
| Msa0112450 | AT5G24470.1 | 30.216 | 139 | 83 | 3 | 8 | 146 | 52 | 176 | 2.54e-15 | 73.9 |
| Msa0112450 | AT2G46790.1 | 31.343 | 134 | 80 | 2 | 8 | 141 | 37 | 158 | 3.37e-15 | 73.6 |
| Msa0112450 | AT5G60100.7 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 2.14e-14 | 70.9 |
| Msa0112450 | AT5G60100.6 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 2.14e-14 | 70.9 |
| Msa0112450 | AT5G60100.4 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 2.14e-14 | 70.9 |
| Msa0112450 | AT5G60100.2 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 3.27e-14 | 70.5 |
| Msa0112450 | AT5G60100.5 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 3.43e-14 | 70.5 |
| Msa0112450 | AT5G60100.3 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 3.43e-14 | 70.5 |
| Msa0112450 | AT5G60100.1 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 3.43e-14 | 70.5 |
| Msa0112450 | AT2G07440.1 | 60.000 | 50 | 20 | 0 | 89 | 138 | 9 | 58 | 2.14e-13 | 64.7 |
| Msa0112450 | AT5G02810.1 | 28.358 | 134 | 84 | 1 | 8 | 141 | 78 | 199 | 1.09e-12 | 66.2 |
Find 37 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGTGATTACATGCTTCTTC+TGG | 0.290924 | 1_3:-27218167 | None:intergenic |
| ATTGAAAATATTCAGATGTT+TGG | 0.307010 | 1_3:+27218031 | Msa0112450:intron |
| AACTCATAACCAGTCATTTC+TGG | 0.328147 | 1_3:-27217283 | None:intergenic |
| TTTGTTGCCTTAGCCTTTGA+AGG | 0.366124 | 1_3:+27217231 | Msa0112450:intron |
| CTCAAAATTTCTGCTTGTAA+AGG | 0.386939 | 1_3:+27216825 | Msa0112450:CDS |
| TTCTGAAGAGGTTCATGTAT+TGG | 0.402386 | 1_3:+27216758 | Msa0112450:CDS |
| TTAGTTACTGCTGTGGATAG+TGG | 0.438893 | 1_3:+27217052 | Msa0112450:intron |
| TTCACATCACATAACTTCAC+TGG | 0.475573 | 1_3:-27218083 | None:intergenic |
| ATAACAGTACCTGTCTATGC+GGG | 0.487586 | 1_3:-27217491 | None:intergenic |
| TCAGAAGACATAATCACTAC+TGG | 0.489512 | 1_3:-27217457 | None:intergenic |
| ATGTGAAGGTGATGATGAAA+TGG | 0.496627 | 1_3:-27218204 | None:intergenic |
| ATATTCTGCCCCGCATAGAC+AGG | 0.510615 | 1_3:+27217482 | Msa0112450:CDS |
| ATATTCAGATGTTTGGAAGA+AGG | 0.511460 | 1_3:+27218038 | Msa0112450:intron |
| TATTGCATGCCAGAAATGAC+TGG | 0.520879 | 1_3:+27217274 | Msa0112450:CDS |
| TTGATCGGAAAGTTATTGAA+AGG | 0.524082 | 1_3:+27216799 | Msa0112450:CDS |
| ATAACAAGATCCACCTTCAA+AGG | 0.539532 | 1_3:-27217244 | None:intergenic |
| GTTGCCTTAGCCTTTGAAGG+TGG | 0.539999 | 1_3:+27217234 | Msa0112450:intron |
| TGCTTGATTCTCCAATCAGA+CGG | 0.554606 | 1_3:+27218255 | Msa0112450:CDS |
| TACATGACAACAAGGGAGGT+TGG | 0.562595 | 1_3:+27218119 | Msa0112450:CDS |
| AGCACACTGGATGCAGACAA+TGG | 0.577593 | 1_3:-27218236 | None:intergenic |
| ACAACAAGGGAGGTTGGAGT+AGG | 0.598300 | 1_3:+27218125 | Msa0112450:CDS |
| ATGTTTGGAAGAAGGTGCAA+AGG | 0.598645 | 1_3:+27218046 | Msa0112450:CDS |
| AGAGAGAAGTCTGAATCTGA+TGG | 0.604808 | 1_3:+27217112 | Msa0112450:CDS |
| GTGAACTTTAGTTACTGCTG+TGG | 0.606977 | 1_3:+27217045 | Msa0112450:intron |
| GATGGAGACAAATTCTGAAG+AGG | 0.610289 | 1_3:+27216746 | None:intergenic |
| TTGATGATAGTCTCATTGAT+CGG | 0.612021 | 1_3:+27216784 | Msa0112450:CDS |
| TGAAGGGTTACATGACAACA+AGG | 0.633631 | 1_3:+27218111 | Msa0112450:CDS |
| GATTGGAGAATCAAGCACAC+TGG | 0.650465 | 1_3:-27218249 | None:intergenic |
| ATGTGATGTGAAACGACTGA+AGG | 0.663812 | 1_3:+27218094 | Msa0112450:CDS |
| TGTGATGTGAAACGACTGAA+GGG | 0.670059 | 1_3:+27218095 | Msa0112450:CDS |
| TATAACAGTACCTGTCTATG+CGG | 0.670864 | 1_3:-27217492 | None:intergenic |
| AATGGAGATGATGAATGTGA+AGG | 0.695750 | 1_3:-27218218 | None:intergenic |
| TAACAGTACCTGTCTATGCG+GGG | 0.697429 | 1_3:-27217490 | None:intergenic |
| GGTGATGATGAAATGGACGG+TGG | 0.704627 | 1_3:-27218197 | None:intergenic |
| GGGTTACATGACAACAAGGG+AGG | 0.715675 | 1_3:+27218115 | Msa0112450:CDS |
| GAAGGTGATGATGAAATGGA+CGG | 0.719690 | 1_3:-27218200 | None:intergenic |
| GAAGGGTTACATGACAACAA+GGG | 0.758159 | 1_3:+27218112 | Msa0112450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAGTAATGATTTTTTCAA+TGG | - | chr1_3:27217347-27217366 | None:intergenic | 15.0% |
| !!! | TATAGTAATGATTTTTTCAA+TGG | - | chr1_3:27217347-27217366 | None:intergenic | 15.0% |
| !!! | TACGAAATAGATGTTTTTAA+AGG | + | chr1_3:27217657-27217676 | Msa0112450:intron | 20.0% |
| !!! | ACGAAATAGATGTTTTTAAA+GGG | + | chr1_3:27217658-27217677 | Msa0112450:intron | 20.0% |
| !!! | ATTTAACTGTCTTTTTTCTT+TGG | - | chr1_3:27217814-27217833 | None:intergenic | 20.0% |
| !! | ATTGAAAATATTCAGATGTT+TGG | + | chr1_3:27218031-27218050 | Msa0112450:intron | 20.0% |
| !!! | TACGAAATAGATGTTTTTAA+AGG | + | chr1_3:27217657-27217676 | Msa0112450:intron | 20.0% |
| !!! | ACGAAATAGATGTTTTTAAA+GGG | + | chr1_3:27217658-27217677 | Msa0112450:intron | 20.0% |
| !!! | ATTTAACTGTCTTTTTTCTT+TGG | - | chr1_3:27217814-27217833 | None:intergenic | 20.0% |
| !! | ATTGAAAATATTCAGATGTT+TGG | + | chr1_3:27218031-27218050 | Msa0112450:intron | 20.0% |
| !!! | GTGTTGATGATTTTTGTTTT+TGG | + | chr1_3:27217023-27217042 | Msa0112450:intron | 25.0% |
| ! | TGAGTTGCTCAAAAAAATTA+AGG | + | chr1_3:27217300-27217319 | Msa0112450:CDS | 25.0% |
| !!! | CGAAATAGATGTTTTTAAAG+GGG | + | chr1_3:27217659-27217678 | Msa0112450:intron | 25.0% |
| !! | TTTTCAATTGTAACAAACCA+TGG | + | chr1_3:27217706-27217725 | Msa0112450:intron | 25.0% |
| !! | GTCATTAAAAAGTATAACCA+TGG | - | chr1_3:27217726-27217745 | None:intergenic | 25.0% |
| !! | TTATTGTTATTAGTTACCAC+TGG | + | chr1_3:27217969-27217988 | Msa0112450:intron | 25.0% |
| !!! | GTGTTGATGATTTTTGTTTT+TGG | + | chr1_3:27217023-27217042 | Msa0112450:intron | 25.0% |
| ! | TGAGTTGCTCAAAAAAATTA+AGG | + | chr1_3:27217300-27217319 | Msa0112450:CDS | 25.0% |
| !!! | CGAAATAGATGTTTTTAAAG+GGG | + | chr1_3:27217659-27217678 | Msa0112450:intron | 25.0% |
| !! | TTTTCAATTGTAACAAACCA+TGG | + | chr1_3:27217706-27217725 | Msa0112450:intron | 25.0% |
| !! | GTCATTAAAAAGTATAACCA+TGG | - | chr1_3:27217726-27217745 | None:intergenic | 25.0% |
| !! | TTATTGTTATTAGTTACCAC+TGG | + | chr1_3:27217969-27217988 | Msa0112450:intron | 25.0% |
| ! | TTGATGATAGTCTCATTGAT+CGG | + | chr1_3:27216784-27216803 | Msa0112450:CDS | 30.0% |
| TTGATCGGAAAGTTATTGAA+AGG | + | chr1_3:27216799-27216818 | Msa0112450:CDS | 30.0% | |
| CTCAAAATTTCTGCTTGTAA+AGG | + | chr1_3:27216825-27216844 | Msa0112450:CDS | 30.0% | |
| CCTGCTTCAAAATGAAATTT+CGG | - | chr1_3:27217414-27217433 | None:intergenic | 30.0% | |
| ATATTCAGATGTTTGGAAGA+AGG | + | chr1_3:27218038-27218057 | Msa0112450:intron | 30.0% | |
| ! | ATCATTTTAAACCGTCTGAT+TGG | - | chr1_3:27218269-27218288 | None:intergenic | 30.0% |
| ! | TTGATGATAGTCTCATTGAT+CGG | + | chr1_3:27216784-27216803 | Msa0112450:CDS | 30.0% |
| TTGATCGGAAAGTTATTGAA+AGG | + | chr1_3:27216799-27216818 | Msa0112450:CDS | 30.0% | |
| CTCAAAATTTCTGCTTGTAA+AGG | + | chr1_3:27216825-27216844 | Msa0112450:CDS | 30.0% | |
| CCTGCTTCAAAATGAAATTT+CGG | - | chr1_3:27217414-27217433 | None:intergenic | 30.0% | |
| ATATTCAGATGTTTGGAAGA+AGG | + | chr1_3:27218038-27218057 | Msa0112450:intron | 30.0% | |
| ! | ATCATTTTAAACCGTCTGAT+TGG | - | chr1_3:27218269-27218288 | None:intergenic | 30.0% |
| ! | TTCTGAAGAGGTTCATGTAT+TGG | + | chr1_3:27216758-27216777 | Msa0112450:CDS | 35.0% |
| GTAAAGGTGAGTTTGTGATT+TGG | + | chr1_3:27216841-27216860 | Msa0112450:intron | 35.0% | |
| !!! | AATCAGAGCACTGCAATTTT+TGG | + | chr1_3:27217075-27217094 | Msa0112450:CDS | 35.0% |
| !!! | ATCAGAGCACTGCAATTTTT+GGG | + | chr1_3:27217076-27217095 | Msa0112450:CDS | 35.0% |
| ! | TCTGATGGTTCTATTGTATG+TGG | + | chr1_3:27217127-27217146 | Msa0112450:intron | 35.0% |
| ATAACAAGATCCACCTTCAA+AGG | - | chr1_3:27217247-27217266 | None:intergenic | 35.0% | |
| AACTCATAACCAGTCATTTC+TGG | - | chr1_3:27217286-27217305 | None:intergenic | 35.0% | |
| !!! | CCGAAATTTCATTTTGAAGC+AGG | + | chr1_3:27217411-27217430 | Msa0112450:intron | 35.0% |
| TCAGAAGACATAATCACTAC+TGG | - | chr1_3:27217460-27217479 | None:intergenic | 35.0% | |
| TATAACAGTACCTGTCTATG+CGG | - | chr1_3:27217495-27217514 | None:intergenic | 35.0% | |
| AACTTCATCACAATTTCCAG+TGG | - | chr1_3:27217988-27218007 | None:intergenic | 35.0% | |
| TTCACATCACATAACTTCAC+TGG | - | chr1_3:27218086-27218105 | None:intergenic | 35.0% | |
| ! | ATGTGAAGGTGATGATGAAA+TGG | - | chr1_3:27218207-27218226 | None:intergenic | 35.0% |
| AATGGAGATGATGAATGTGA+AGG | - | chr1_3:27218221-27218240 | None:intergenic | 35.0% | |
| ! | TTCTGAAGAGGTTCATGTAT+TGG | + | chr1_3:27216758-27216777 | Msa0112450:CDS | 35.0% |
| GTAAAGGTGAGTTTGTGATT+TGG | + | chr1_3:27216841-27216860 | Msa0112450:intron | 35.0% | |
| !!! | AATCAGAGCACTGCAATTTT+TGG | + | chr1_3:27217075-27217094 | Msa0112450:CDS | 35.0% |
| !!! | ATCAGAGCACTGCAATTTTT+GGG | + | chr1_3:27217076-27217095 | Msa0112450:CDS | 35.0% |
| ! | TCTGATGGTTCTATTGTATG+TGG | + | chr1_3:27217127-27217146 | Msa0112450:intron | 35.0% |
| ATAACAAGATCCACCTTCAA+AGG | - | chr1_3:27217247-27217266 | None:intergenic | 35.0% | |
| AACTCATAACCAGTCATTTC+TGG | - | chr1_3:27217286-27217305 | None:intergenic | 35.0% | |
| !!! | CCGAAATTTCATTTTGAAGC+AGG | + | chr1_3:27217411-27217430 | Msa0112450:intron | 35.0% |
| TCAGAAGACATAATCACTAC+TGG | - | chr1_3:27217460-27217479 | None:intergenic | 35.0% | |
| TATAACAGTACCTGTCTATG+CGG | - | chr1_3:27217495-27217514 | None:intergenic | 35.0% | |
| AACTTCATCACAATTTCCAG+TGG | - | chr1_3:27217988-27218007 | None:intergenic | 35.0% | |
| TTCACATCACATAACTTCAC+TGG | - | chr1_3:27218086-27218105 | None:intergenic | 35.0% | |
| ! | ATGTGAAGGTGATGATGAAA+TGG | - | chr1_3:27218207-27218226 | None:intergenic | 35.0% |
| AATGGAGATGATGAATGTGA+AGG | - | chr1_3:27218221-27218240 | None:intergenic | 35.0% | |
| GTGAACTTTAGTTACTGCTG+TGG | + | chr1_3:27217045-27217064 | Msa0112450:intron | 40.0% | |
| TTAGTTACTGCTGTGGATAG+TGG | + | chr1_3:27217052-27217071 | Msa0112450:intron | 40.0% | |
| !!! | TCAGAGCACTGCAATTTTTG+GGG | + | chr1_3:27217077-27217096 | Msa0112450:CDS | 40.0% |
| AGAGAGAAGTCTGAATCTGA+TGG | + | chr1_3:27217112-27217131 | Msa0112450:CDS | 40.0% | |
| ! | TTTGTTGCCTTAGCCTTTGA+AGG | + | chr1_3:27217231-27217250 | Msa0112450:intron | 40.0% |
| TATTGCATGCCAGAAATGAC+TGG | + | chr1_3:27217274-27217293 | Msa0112450:CDS | 40.0% | |
| ! | GCAGGAATCGTCAACTTTTA+AGG | + | chr1_3:27217429-27217448 | Msa0112450:intron | 40.0% |
| ATAACAGTACCTGTCTATGC+GGG | - | chr1_3:27217494-27217513 | None:intergenic | 40.0% | |
| ! | ATGTTTGGAAGAAGGTGCAA+AGG | + | chr1_3:27218046-27218065 | Msa0112450:CDS | 40.0% |
| ATGTGATGTGAAACGACTGA+AGG | + | chr1_3:27218094-27218113 | Msa0112450:CDS | 40.0% | |
| TGTGATGTGAAACGACTGAA+GGG | + | chr1_3:27218095-27218114 | Msa0112450:CDS | 40.0% | |
| TGAAGGGTTACATGACAACA+AGG | + | chr1_3:27218111-27218130 | Msa0112450:CDS | 40.0% | |
| GAAGGGTTACATGACAACAA+GGG | + | chr1_3:27218112-27218131 | Msa0112450:CDS | 40.0% | |
| GAGTGATTACATGCTTCTTC+TGG | - | chr1_3:27218170-27218189 | None:intergenic | 40.0% | |
| ! | GAAGGTGATGATGAAATGGA+CGG | - | chr1_3:27218203-27218222 | None:intergenic | 40.0% |
| TGCTTGATTCTCCAATCAGA+CGG | + | chr1_3:27218255-27218274 | Msa0112450:CDS | 40.0% | |
| GTGAACTTTAGTTACTGCTG+TGG | + | chr1_3:27217045-27217064 | Msa0112450:intron | 40.0% | |
| TTAGTTACTGCTGTGGATAG+TGG | + | chr1_3:27217052-27217071 | Msa0112450:intron | 40.0% | |
| !!! | TCAGAGCACTGCAATTTTTG+GGG | + | chr1_3:27217077-27217096 | Msa0112450:CDS | 40.0% |
| AGAGAGAAGTCTGAATCTGA+TGG | + | chr1_3:27217112-27217131 | Msa0112450:CDS | 40.0% | |
| ! | TTTGTTGCCTTAGCCTTTGA+AGG | + | chr1_3:27217231-27217250 | Msa0112450:intron | 40.0% |
| TATTGCATGCCAGAAATGAC+TGG | + | chr1_3:27217274-27217293 | Msa0112450:CDS | 40.0% | |
| ! | GCAGGAATCGTCAACTTTTA+AGG | + | chr1_3:27217429-27217448 | Msa0112450:intron | 40.0% |
| ATAACAGTACCTGTCTATGC+GGG | - | chr1_3:27217494-27217513 | None:intergenic | 40.0% | |
| ! | ATGTTTGGAAGAAGGTGCAA+AGG | + | chr1_3:27218046-27218065 | Msa0112450:CDS | 40.0% |
| ATGTGATGTGAAACGACTGA+AGG | + | chr1_3:27218094-27218113 | Msa0112450:CDS | 40.0% | |
| TGTGATGTGAAACGACTGAA+GGG | + | chr1_3:27218095-27218114 | Msa0112450:CDS | 40.0% | |
| TGAAGGGTTACATGACAACA+AGG | + | chr1_3:27218111-27218130 | Msa0112450:CDS | 40.0% | |
| GAAGGGTTACATGACAACAA+GGG | + | chr1_3:27218112-27218131 | Msa0112450:CDS | 40.0% | |
| GAGTGATTACATGCTTCTTC+TGG | - | chr1_3:27218170-27218189 | None:intergenic | 40.0% | |
| ! | GAAGGTGATGATGAAATGGA+CGG | - | chr1_3:27218203-27218222 | None:intergenic | 40.0% |
| TGCTTGATTCTCCAATCAGA+CGG | + | chr1_3:27218255-27218274 | Msa0112450:CDS | 40.0% | |
| !!! | AGCACTGCAATTTTTGGGGT+TGG | + | chr1_3:27217081-27217100 | Msa0112450:CDS | 45.0% |
| AGATCCACCTTCAAAGGCTA+AGG | - | chr1_3:27217241-27217260 | None:intergenic | 45.0% | |
| TAACAGTACCTGTCTATGCG+GGG | - | chr1_3:27217493-27217512 | None:intergenic | 45.0% | |
| TACATGACAACAAGGGAGGT+TGG | + | chr1_3:27218119-27218138 | Msa0112450:CDS | 45.0% | |
| GATTGGAGAATCAAGCACAC+TGG | - | chr1_3:27218252-27218271 | None:intergenic | 45.0% | |
| !!! | AGCACTGCAATTTTTGGGGT+TGG | + | chr1_3:27217081-27217100 | Msa0112450:CDS | 45.0% |
| AGATCCACCTTCAAAGGCTA+AGG | - | chr1_3:27217241-27217260 | None:intergenic | 45.0% | |
| TAACAGTACCTGTCTATGCG+GGG | - | chr1_3:27217493-27217512 | None:intergenic | 45.0% | |
| TACATGACAACAAGGGAGGT+TGG | + | chr1_3:27218119-27218138 | Msa0112450:CDS | 45.0% | |
| GATTGGAGAATCAAGCACAC+TGG | - | chr1_3:27218252-27218271 | None:intergenic | 45.0% | |
| !!! | ATTTTTTTTAAACTTTTTTA+AGG | + | chr1_3:27217514-27217533 | Msa0112450:intron | 5.0% |
| !!! | TTTTTTTTAAACTTTTTTAA+GGG | + | chr1_3:27217515-27217534 | Msa0112450:intron | 5.0% |
| !! | TAATTTATACTTATATATAA+TGG | - | chr1_3:27217848-27217867 | None:intergenic | 5.0% |
| !!! | ATTTTTTTTAAACTTTTTTA+AGG | + | chr1_3:27217514-27217533 | Msa0112450:intron | 5.0% |
| !!! | TTTTTTTTAAACTTTTTTAA+GGG | + | chr1_3:27217515-27217534 | Msa0112450:intron | 5.0% |
| !! | TAATTTATACTTATATATAA+TGG | - | chr1_3:27217848-27217867 | None:intergenic | 5.0% |
| ! | GTTGCCTTAGCCTTTGAAGG+TGG | + | chr1_3:27217234-27217253 | Msa0112450:intron | 50.0% |
| ATATTCTGCCCCGCATAGAC+AGG | + | chr1_3:27217482-27217501 | Msa0112450:CDS | 50.0% | |
| GGGTTACATGACAACAAGGG+AGG | + | chr1_3:27218115-27218134 | Msa0112450:CDS | 50.0% | |
| ACAACAAGGGAGGTTGGAGT+AGG | + | chr1_3:27218125-27218144 | Msa0112450:CDS | 50.0% | |
| ! | GGTGATGATGAAATGGACGG+TGG | - | chr1_3:27218200-27218219 | None:intergenic | 50.0% |
| AGCACACTGGATGCAGACAA+TGG | - | chr1_3:27218239-27218258 | None:intergenic | 50.0% | |
| ! | GTTGCCTTAGCCTTTGAAGG+TGG | + | chr1_3:27217234-27217253 | Msa0112450:intron | 50.0% |
| ATATTCTGCCCCGCATAGAC+AGG | + | chr1_3:27217482-27217501 | Msa0112450:CDS | 50.0% | |
| GGGTTACATGACAACAAGGG+AGG | + | chr1_3:27218115-27218134 | Msa0112450:CDS | 50.0% | |
| ACAACAAGGGAGGTTGGAGT+AGG | + | chr1_3:27218125-27218144 | Msa0112450:CDS | 50.0% | |
| ! | GGTGATGATGAAATGGACGG+TGG | - | chr1_3:27218200-27218219 | None:intergenic | 50.0% |
| AGCACACTGGATGCAGACAA+TGG | - | chr1_3:27218239-27218258 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 27216747 | 27218301 | 27216747 | ID=Msa0112450;Name=Msa0112450 |
| chr1_3 | mRNA | 27216747 | 27218301 | 27216747 | ID=Msa0112450-mRNA-1;Parent=Msa0112450;Name=Msa0112450-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|1|1|1|5|0|196 |
| chr1_3 | exon | 27216747 | 27216846 | 27216747 | ID=Msa0112450-mRNA-1:exon:9133;Parent=Msa0112450-mRNA-1 |
| chr1_3 | exon | 27217056 | 27217141 | 27217056 | ID=Msa0112450-mRNA-1:exon:9134;Parent=Msa0112450-mRNA-1 |
| chr1_3 | exon | 27217244 | 27217321 | 27217244 | ID=Msa0112450-mRNA-1:exon:9135;Parent=Msa0112450-mRNA-1 |
| chr1_3 | exon | 27217433 | 27217503 | 27217433 | ID=Msa0112450-mRNA-1:exon:9136;Parent=Msa0112450-mRNA-1 |
| chr1_3 | exon | 27218046 | 27218301 | 27218046 | ID=Msa0112450-mRNA-1:exon:9137;Parent=Msa0112450-mRNA-1 |
| chr1_3 | CDS | 27216747 | 27216846 | 27216747 | ID=Msa0112450-mRNA-1:cds;Parent=Msa0112450-mRNA-1 |
| chr1_3 | CDS | 27217056 | 27217141 | 27217056 | ID=Msa0112450-mRNA-1:cds;Parent=Msa0112450-mRNA-1 |
| chr1_3 | CDS | 27217244 | 27217321 | 27217244 | ID=Msa0112450-mRNA-1:cds;Parent=Msa0112450-mRNA-1 |
| chr1_3 | CDS | 27217433 | 27217503 | 27217433 | ID=Msa0112450-mRNA-1:cds;Parent=Msa0112450-mRNA-1 |
| chr1_3 | CDS | 27218046 | 27218301 | 27218046 | ID=Msa0112450-mRNA-1:cds;Parent=Msa0112450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
