AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0112660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0112660 MtrunA17_Chr1g0170581 83.197 244 26 1 1 229 1 244 5.73e-143 399
Msa0112660 MtrunA17_Chr1g0170571 85.062 241 29 1 1 234 1 241 1.74e-140 393
Msa0112660 MtrunA17_Chr1g0170591 79.668 241 42 1 1 234 1 241 1.56e-138 388
Msa0112660 MtrunA17_Chr7g0256671 58.197 244 82 6 1 226 1 242 1.43e-64 201
Msa0112660 MtrunA17_Chr6g0474681 31.818 154 93 5 50 200 6 150 6.95e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0112660 AT3G56970.1 40.161 249 123 4 1 225 1 247 9.93e-52 168
Msa0112660 AT3G56980.1 37.984 258 125 5 1 227 1 254 3.91e-43 146
Msa0112660 AT2G41240.1 38.075 239 135 3 1 227 1 238 7.37e-41 140
Msa0112660 AT2G41240.2 37.657 239 135 4 1 227 1 237 2.39e-38 134
Msa0112660 AT5G04150.1 42.077 183 98 4 45 222 78 257 1.41e-32 119
Msa0112660 AT5G04150.2 42.945 163 88 2 45 204 78 238 2.61e-32 118

Find 46 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAATTCCAGTATGTATTTA+AGG 0.091448 1_3:-27799646 None:intergenic
AGTGACCCTGAAGCTGTTTA+TGG 0.179245 1_3:-27799168 None:intergenic
TGAAGCTGTTTATGGGTTAT+TGG 0.224116 1_3:-27799160 None:intergenic
CTTCTATAATTTGCATTTCC+AGG 0.251812 1_3:+27799952 Msa0112660:CDS
GAGCTTCTCATTTAGAATTT+CGG 0.255939 1_3:-27802871 None:intergenic
TTCTGAGATCTTGATATGTT+TGG 0.287728 1_3:+27799871 Msa0112660:CDS
TGAGAAGCTCTTATCAATAA+TGG 0.319674 1_3:+27802884 Msa0112660:CDS
CTTTCTTCATCTCAGACCTT+TGG 0.339976 1_3:+27799920 Msa0112660:CDS
CAGAAGAAATTGAGCATTCC+GGG 0.366600 1_3:+27799608 Msa0112660:intron
AAAAGTCCTTAAATACATAC+TGG 0.376466 1_3:+27799640 Msa0112660:CDS
GCAGAAGAAATTGAGCATTC+CGG 0.378244 1_3:+27799607 Msa0112660:intron
AATAACCCATAAACAGCTTC+AGG 0.395318 1_3:+27799162 Msa0112660:CDS
TCTTCATCTCAGACCTTTGG+AGG 0.399010 1_3:+27799923 Msa0112660:CDS
AGTACCATTTGATCTGAAAC+AGG 0.414053 1_3:-27799378 None:intergenic
GTGACCCTGAAGCTGTTTAT+GGG 0.414301 1_3:-27799167 None:intergenic
GCTCTTATCAATAATGGATA+AGG 0.434619 1_3:+27802890 Msa0112660:CDS
ATCTCAGACCTTTGGAGGGA+GGG 0.436300 1_3:+27799928 Msa0112660:CDS
TCTTCCTGTTTCAGATCAAA+TGG 0.439923 1_3:+27799374 Msa0112660:CDS
AACAATTGGATGGCCCTTTG+AGG 0.464251 1_3:+27799135 Msa0112660:CDS
TGGGTTATTGGCTCCTCAAA+GGG 0.469226 1_3:-27799148 None:intergenic
ATGGGTTATTGGCTCCTCAA+AGG 0.474936 1_3:-27799149 None:intergenic
CATATCAAGATCTCAGAAAG+TGG 0.493296 1_3:-27799866 None:intergenic
CATCTCAGACCTTTGGAGGG+AGG 0.501008 1_3:+27799927 Msa0112660:CDS
CGAGGGACTAGTTAAGAGAA+AGG 0.501387 1_3:+27799679 Msa0112660:CDS
AAGAAAGATTAAGAAGCAAA+AGG 0.505181 1_3:-27799904 None:intergenic
CTTCATCTCAGACCTTTGGA+GGG 0.506754 1_3:+27799924 Msa0112660:CDS
TTGATATGTTTGGAAAATGA+TGG 0.537710 1_3:+27799881 Msa0112660:CDS
AAGAAACATAGTTACAACTC+TGG 0.547575 1_3:+27799767 Msa0112660:CDS
CATGCCAAGGTCACTGCTTG+TGG 0.551876 1_3:-27799271 None:intergenic
ATGATCACCTCATCTACTTG+TGG 0.555649 1_3:-27799725 None:intergenic
CATCCAATTGTTGAAAACAT+AGG 0.558093 1_3:-27799124 None:intergenic
TTATCAATAATGGATAAGGA+AGG 0.562276 1_3:+27802894 Msa0112660:CDS
CAATCCACAAGCAGTGACCT+TGG 0.569748 1_3:+27799267 Msa0112660:CDS
ATAACCCATAAACAGCTTCA+GGG 0.574272 1_3:+27799163 Msa0112660:CDS
CCAATTGTTGAAAACATAGG+AGG 0.582074 1_3:-27799121 None:intergenic
GTCACTGCTTGTGGATTGTG+AGG 0.591686 1_3:-27799262 None:intergenic
ATAGAAGACCCTCCCTCCAA+AGG 0.594272 1_3:-27799936 None:intergenic
AGGAAGAAGTGAACGAAGTG+AGG 0.599839 1_3:-27799358 None:intergenic
TATCAATAATGGATAAGGAA+GGG 0.600012 1_3:+27802895 Msa0112660:CDS
CACAAGCAGTGACCTTGGCA+TGG 0.603384 1_3:+27799272 Msa0112660:CDS
TCATGAACAAAGAATCTCAA+AGG 0.621931 1_3:+27799744 Msa0112660:CDS
GAATTACAGAAGCAAGTCGA+GGG 0.637852 1_3:+27799662 Msa0112660:CDS
CAAGCTTCTTGACCATGCCA+AGG 0.656633 1_3:-27799284 None:intergenic
GGAATTACAGAAGCAAGTCG+AGG 0.672305 1_3:+27799661 Msa0112660:CDS
TCACTGCTTGTGGATTGTGA+GGG 0.698792 1_3:-27799261 None:intergenic
AGTGTAACATGAAATCTGAG+TGG 0.721902 1_3:-27799831 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATCATTTGTATAAT+GGG - chr1_3:27800591-27800610 None:intergenic 10.0%
!! AAAAAAAATCATTTGTATAA+TGG - chr1_3:27800592-27800611 None:intergenic 10.0%
!! AGAAAAAAAGAAAAAAAAAA+AGG + chr1_3:27800635-27800654 Msa0112660:intron 10.0%
!!! GTTTTTTTGAATTTATTTAA+CGG - chr1_3:27801472-27801491 None:intergenic 10.0%
!!! GTTTTTTTGAATTTATTTAA+CGG + chr1_3:27801472-27801491 Msa0112660:intron 10.0%
!!! ACTAAAAAAAAAAATTGTTT+TGG - chr1_3:27801536-27801555 None:intergenic 10.0%
!!! ACAATTTTTTTTTTTAGTTA+AGG + chr1_3:27801538-27801557 Msa0112660:intron 10.0%
!!! CAATTTTTTTTTTTAGTTAA+GGG + chr1_3:27801539-27801558 Msa0112660:intron 10.0%
!! AGTATAAAATTTCATTTAAT+AGG + chr1_3:27802186-27802205 Msa0112660:intron 10.0%
!! GTATAAAATTTCATTTAATA+GGG + chr1_3:27802187-27802206 Msa0112660:intron 10.0%
!! TATAAAATTTCATTTAATAG+GGG + chr1_3:27802188-27802207 Msa0112660:intron 10.0%
!!! ACAAATTATTGATTTTTTTG+CGG - chr1_3:27799335-27799354 None:intergenic 15.0%
!!! TTTAAAGTAATATCGAAAAA+GGG - chr1_3:27799527-27799546 None:intergenic 15.0%
!!! ATTTAAAGTAATATCGAAAA+AGG - chr1_3:27799528-27799547 None:intergenic 15.0%
!! TTTGTCATTGTAATATTTAT+AGG - chr1_3:27800511-27800530 None:intergenic 15.0%
!!! ACAATCTTTTTTTTAGTTAA+GGG - chr1_3:27800710-27800729 None:intergenic 15.0%
!!! AACAATCTTTTTTTTAGTTA+AGG - chr1_3:27800711-27800730 None:intergenic 15.0%
!!! AACTAAAAAAAAGATTGTTT+TGG + chr1_3:27800712-27800731 Msa0112660:intron 15.0%
!! AATAAATTCAAAAAAACGTT+AGG + chr1_3:27800779-27800798 Msa0112660:intron 15.0%
!! ATAAATTCAAAAAAACGTTA+GGG + chr1_3:27800780-27800799 Msa0112660:intron 15.0%
!! GATACTAAATAAATACTTAA+GGG + chr1_3:27800855-27800874 Msa0112660:intron 15.0%
!!! AAAAAACTTAAATGTTCTTT+TGG - chr1_3:27800882-27800901 None:intergenic 15.0%
!!! TTGTCTTTTAAGTATTTATT+TGG + chr1_3:27801386-27801405 Msa0112660:intron 15.0%
!! ATAAATTCAAAAAAACGTTA+GGG - chr1_3:27800780-27800799 None:intergenic 15.0%
!! AATAAATTCAAAAAAACGTT+AGG - chr1_3:27800779-27800798 None:intergenic 15.0%
!! GTCTTTATATTTAAAAAGTA+TGG + chr1_3:27802085-27802104 Msa0112660:intron 15.0%
!! TGATTAATCATTTGAATAAT+GGG - chr1_3:27802625-27802644 None:intergenic 15.0%
!! TTCGATATTACTTTAAATTG+TGG + chr1_3:27799530-27799549 Msa0112660:intron 20.0%
!! AAACAATGAAACAAAAATGT+AGG + chr1_3:27800546-27800565 Msa0112660:intron 20.0%
!!! AATGATTTTTTTTGATGAAG+AGG + chr1_3:27800599-27800618 Msa0112660:intron 20.0%
!! GATACCAAATATATAGTTAA+GGG - chr1_3:27800679-27800698 None:intergenic 20.0%
!! TTTGAATTTATTTAACGGAA+GGG - chr1_3:27801477-27801496 None:intergenic 20.0%
!!! TTTTGAATTTATTTAACGGA+AGG - chr1_3:27801476-27801495 None:intergenic 20.0%
!!! GTATTTATTTAGTATCGTTT+TGG - chr1_3:27800851-27800870 None:intergenic 20.0%
!! CGATACTAAATAAATACTTA+AGG + chr1_3:27800854-27800873 Msa0112660:intron 20.0%
!!! TGTTATTGATTGTTATTGTT+GGG - chr1_3:27800987-27801006 None:intergenic 20.0%
!!! ATGTTATTGATTGTTATTGT+TGG - chr1_3:27800988-27801007 None:intergenic 20.0%
!! AAAAGACAAAAAGAACATTT+AGG - chr1_3:27801375-27801394 None:intergenic 20.0%
!!! GTATTTATTTGGTATTGTTT+TGG + chr1_3:27801397-27801416 Msa0112660:intron 20.0%
!!! TTTTGAATTTATTTAACGGA+AGG + chr1_3:27801476-27801495 Msa0112660:intron 20.0%
!! TTTGAATTTATTTAACGGAA+GGG + chr1_3:27801477-27801496 Msa0112660:intron 20.0%
!! ATAATAACATCATTATCGTT+TGG + chr1_3:27801980-27801999 Msa0112660:intron 20.0%
!!! ACTTTAATTTGTAGATGTTA+AGG - chr1_3:27802053-27802072 None:intergenic 20.0%
!! CAAAAATTTAACAAATAACG+CGG + chr1_3:27802249-27802268 Msa0112660:intron 20.0%
!! TTTATTAAAATCAATGTGGA+CGG - chr1_3:27802531-27802550 None:intergenic 20.0%
!! GTGATTAATCATTTGAATAA+TGG - chr1_3:27802626-27802645 None:intergenic 20.0%
!!! TATTAATTGATAGTTCCTTT+TGG + chr1_3:27802812-27802831 Msa0112660:intron 20.0%
!!! ATTAATTGATAGTTCCTTTT+GGG + chr1_3:27802813-27802832 Msa0112660:intron 20.0%
!! TTCATTTTCAGATCAATTTG+AGG + chr1_3:27799218-27799237 Msa0112660:intron 25.0%
! TATAGACAATTAGAAACAGA+AGG - chr1_3:27799417-27799436 None:intergenic 25.0%
! AAAAGTCCTTAAATACATAC+TGG + chr1_3:27799640-27799659 Msa0112660:CDS 25.0%
! GTAATTCCAGTATGTATTTA+AGG - chr1_3:27799649-27799668 None:intergenic 25.0%
! TTGATATGTTTGGAAAATGA+TGG + chr1_3:27799881-27799900 Msa0112660:CDS 25.0%
! AAGAAAGATTAAGAAGCAAA+AGG - chr1_3:27799907-27799926 None:intergenic 25.0%
! AAGACTTTACTCAACAATAT+TGG - chr1_3:27800022-27800041 None:intergenic 25.0%
! CGATACCAAATATATAGTTA+AGG - chr1_3:27801569-27801588 None:intergenic 25.0%
!!! GAATTCTGTGTTTTTTTTTC+TGG + chr1_3:27801295-27801314 Msa0112660:intron 25.0%
! CGATACCAAATATATAGTTA+GGG + chr1_3:27801569-27801588 Msa0112660:intron 25.0%
! GATACCAAATATATAGTTAG+GGG + chr1_3:27801570-27801589 Msa0112660:intron 25.0%
!!! AGGCTTTATTAAAATCAATG+TGG - chr1_3:27802535-27802554 None:intergenic 25.0%
!!! TTGATTTTAATAAAGCCTTC+CGG + chr1_3:27802537-27802556 Msa0112660:intron 25.0%
! TCACTTGACATTTATTTGTT+GGG + chr1_3:27802586-27802605 Msa0112660:intron 25.0%
!!! TTATCAATAATGGATAAGGA+AGG + chr1_3:27802894-27802913 Msa0112660:CDS 25.0%
!!! TATCAATAATGGATAAGGAA+GGG + chr1_3:27802895-27802914 Msa0112660:CDS 25.0%
CATCCAATTGTTGAAAACAT+AGG - chr1_3:27799127-27799146 None:intergenic 30.0%
! CTATGTTTTCAACAATTGGA+TGG + chr1_3:27799125-27799144 Msa0112660:CDS 30.0%
ACAATTAGAAACAGAAGGAA+GGG - chr1_3:27799412-27799431 None:intergenic 30.0%
TCATGAACAAAGAATCTCAA+AGG + chr1_3:27799744-27799763 Msa0112660:CDS 30.0%
AAGAAACATAGTTACAACTC+TGG + chr1_3:27799767-27799786 Msa0112660:CDS 30.0%
! GTTTTGTAGTTTCAACAAGT+AGG + chr1_3:27799789-27799808 Msa0112660:CDS 30.0%
!! TTCTGAGATCTTGATATGTT+TGG + chr1_3:27799871-27799890 Msa0112660:CDS 30.0%
! CTTCTATAATTTGCATTTCC+AGG + chr1_3:27799952-27799971 Msa0112660:CDS 30.0%
TTTATCTATGACCAATGCAT+TGG + chr1_3:27800473-27800492 Msa0112660:intron 30.0%
ACAAAAAATAGCCAATGCAT+TGG - chr1_3:27800487-27800506 None:intergenic 30.0%
! AAAAGGCTTAAATGCTCTTT+TGG + chr1_3:27800652-27800671 Msa0112660:intron 30.0%
TGGTCCCTTAACTATATATT+TGG + chr1_3:27800672-27800691 Msa0112660:intron 30.0%
CTATATATTTGGTATCGCTT+TGG + chr1_3:27800683-27800702 Msa0112660:intron 30.0%
! TTTATCTCTGTTACCTGTTT+TGG + chr1_3:27800744-27800763 Msa0112660:intron 30.0%
! TTGTTGTAAGTTGTTATTGC+TGG - chr1_3:27800938-27800957 None:intergenic 30.0%
ATCAATAACAACAACAACAC+AGG + chr1_3:27801024-27801043 Msa0112660:intron 30.0%
! CAAAAAAACCAACCCATTTT+CGG + chr1_3:27801060-27801079 Msa0112660:intron 30.0%
! ATGCTTTTAGATCCGAAAAT+GGG - chr1_3:27801075-27801094 None:intergenic 30.0%
! TATGCTTTTAGATCCGAAAA+TGG - chr1_3:27801076-27801095 None:intergenic 30.0%
!!! TTCTATTGCTGCAGTTTTTT+CGG + chr1_3:27801143-27801162 Msa0112660:intron 30.0%
CTATATATTTGGTATCGCTT+TGG - chr1_3:27800683-27800702 None:intergenic 30.0%
GCGATACCAAATATATAGTT+AGG + chr1_3:27801568-27801587 Msa0112660:intron 30.0%
!!! GATCCAGAAATTTTGACTTA+CGG + chr1_3:27801897-27801916 Msa0112660:intron 30.0%
!!! ATCCAGAAATTTTGACTTAC+GGG + chr1_3:27801898-27801917 Msa0112660:intron 30.0%
!!! GGGCAATCTATTATTTTAAG+AGG + chr1_3:27802208-27802227 Msa0112660:intron 30.0%
TGATTACAGATCTATCATCA+TGG - chr1_3:27802350-27802369 None:intergenic 30.0%
GAACTTTCAGCTATTTGAAA+GGG - chr1_3:27802394-27802413 None:intergenic 30.0%
CTTTCAAATAGCTGAAAGTT+CGG + chr1_3:27802393-27802412 Msa0112660:intron 30.0%
! AATTGGATTCATGGTTTTTC+TGG - chr1_3:27802447-27802466 None:intergenic 30.0%
!! AGGTCTTTTGAGAAACAATA+GGG - chr1_3:27802472-27802491 None:intergenic 30.0%
GTCACTTGACATTTATTTGT+TGG + chr1_3:27802585-27802604 Msa0112660:intron 30.0%
! GAGCTTCTCATTTAGAATTT+CGG - chr1_3:27802874-27802893 None:intergenic 30.0%
TGAGAAGCTCTTATCAATAA+TGG + chr1_3:27802884-27802903 Msa0112660:CDS 30.0%
!! GCTCTTATCAATAATGGATA+AGG + chr1_3:27802890-27802909 Msa0112660:CDS 30.0%
CCAATTGTTGAAAACATAGG+AGG - chr1_3:27799124-27799143 None:intergenic 35.0%
! CCTCCTATGTTTTCAACAAT+TGG + chr1_3:27799121-27799140 Msa0112660:CDS 35.0%
! TGAAGCTGTTTATGGGTTAT+TGG - chr1_3:27799163-27799182 None:intergenic 35.0%
AATAACCCATAAACAGCTTC+AGG + chr1_3:27799162-27799181 Msa0112660:CDS 35.0%
ATAACCCATAAACAGCTTCA+GGG + chr1_3:27799163-27799182 Msa0112660:CDS 35.0%
TCTTCCTGTTTCAGATCAAA+TGG + chr1_3:27799374-27799393 Msa0112660:CDS 35.0%
! AGTACCATTTGATCTGAAAC+AGG - chr1_3:27799381-27799400 None:intergenic 35.0%
GACAATTAGAAACAGAAGGA+AGG - chr1_3:27799413-27799432 None:intergenic 35.0%
! CTTGAAAACCTTGTGTTTTG+AGG + chr1_3:27799471-27799490 Msa0112660:intron 35.0%
!!! AGGACTTTTGAAATTGTTCC+CGG - chr1_3:27799629-27799648 None:intergenic 35.0%
!! ACTTTTTCCACAAGTAGATG+AGG + chr1_3:27799718-27799737 Msa0112660:CDS 35.0%
AGTGTAACATGAAATCTGAG+TGG - chr1_3:27799834-27799853 None:intergenic 35.0%
CATATCAAGATCTCAGAAAG+TGG - chr1_3:27799869-27799888 None:intergenic 35.0%
! TCCAGGTGTGTTAATTTTAC+AGG + chr1_3:27799969-27799988 Msa0112660:intron 35.0%
TCCTGTAAAATTAACACACC+TGG - chr1_3:27799973-27799992 None:intergenic 35.0%
! TTTTAGATCCGAAAATGGGT+TGG - chr1_3:27801071-27801090 None:intergenic 35.0%
!!! ATTGTTTTGGTCCCAAAATC+TGG + chr1_3:27801410-27801429 Msa0112660:intron 35.0%
!!! TTGTTTTGGTCCCAAAATCT+GGG + chr1_3:27801411-27801430 Msa0112660:intron 35.0%
TGGTCCCCTAACTATATATT+TGG - chr1_3:27801577-27801596 None:intergenic 35.0%
!!! TTTTGGCTTGAATGCTCTTT+TGG - chr1_3:27801597-27801616 None:intergenic 35.0%
! AAGAGAATAAATGTGCTGAC+TGG - chr1_3:27801745-27801764 None:intergenic 35.0%
CAACTTTGCTTTCTCTCATT+AGG - chr1_3:27801817-27801836 None:intergenic 35.0%
!!! TCCAGAAATTTTGACTTACG+GGG + chr1_3:27801899-27801918 Msa0112660:intron 35.0%
AAATAACGCGGAGAAATTAG+TGG + chr1_3:27802261-27802280 Msa0112660:intron 35.0%
AATAACGCGGAGAAATTAGT+GGG + chr1_3:27802262-27802281 Msa0112660:intron 35.0%
TATTTGAAAGGGTCTTCAGT+TGG - chr1_3:27802383-27802402 None:intergenic 35.0%
CGAACTTTCAGCTATTTGAA+AGG - chr1_3:27802395-27802414 None:intergenic 35.0%
!! GTCTTTTGAGAAACAATAGG+GGG - chr1_3:27802470-27802489 None:intergenic 35.0%
!! GGTCTTTTGAGAAACAATAG+GGG - chr1_3:27802471-27802490 None:intergenic 35.0%
!! GAGGTCTTTTGAGAAACAAT+AGG - chr1_3:27802473-27802492 None:intergenic 35.0%
!!! ACCTTGTGTTTTGAGGAGTA+TGG + chr1_3:27799478-27799497 Msa0112660:intron 40.0%
ACCATACTCCTCAAAACACA+AGG - chr1_3:27799482-27799501 None:intergenic 40.0%
! GAAAAAGGGCGTACACAATT+AGG - chr1_3:27799513-27799532 None:intergenic 40.0%
GCAGAAGAAATTGAGCATTC+CGG + chr1_3:27799607-27799626 Msa0112660:intron 40.0%
CAGAAGAAATTGAGCATTCC+GGG + chr1_3:27799608-27799627 Msa0112660:intron 40.0%
GAATTACAGAAGCAAGTCGA+GGG + chr1_3:27799662-27799681 Msa0112660:CDS 40.0%
ATGATCACCTCATCTACTTG+TGG - chr1_3:27799728-27799747 None:intergenic 40.0%
CTTTCTTCATCTCAGACCTT+TGG + chr1_3:27799920-27799939 Msa0112660:CDS 40.0%
! AACACACCAACCCAGATTTT+GGG + chr1_3:27800824-27800843 Msa0112660:intron 40.0%
!! TCGTTTTGGTCCCAAAATCT+GGG - chr1_3:27800837-27800856 None:intergenic 40.0%
!! ATCGTTTTGGTCCCAAAATC+TGG - chr1_3:27800838-27800857 None:intergenic 40.0%
! TGGGTTGTTGTTATTGTTGC+TGG - chr1_3:27800968-27800987 None:intergenic 40.0%
!!! TTTTTTCGGTACTGTGGATG+AGG + chr1_3:27801157-27801176 Msa0112660:intron 40.0%
GGGGAAACGAAAATGAAGAT+GGG + chr1_3:27801185-27801204 Msa0112660:intron 40.0%
GGGAAACGAAAATGAAGATG+GGG + chr1_3:27801186-27801205 Msa0112660:intron 40.0%
TTAACGGAAGGGACTAAAAC+AGG + chr1_3:27801488-27801507 Msa0112660:intron 40.0%
GAAGGGACTAAAACAGGTAA+CGG + chr1_3:27801494-27801513 Msa0112660:intron 40.0%
!!! CGGATCGGCTAGTTTTTTTT+TGG - chr1_3:27801614-27801633 None:intergenic 40.0%
AGCAGGATGTTATCCAATTG+AGG + chr1_3:27801662-27801681 Msa0112660:intron 40.0%
AGGATGTTATCCAATTGAGG+AGG + chr1_3:27801665-27801684 Msa0112660:intron 40.0%
ATGTTATCCAATTGAGGAGG+AGG + chr1_3:27801668-27801687 Msa0112660:intron 40.0%
AGGAGAATTCCACATCTTCA+AGG + chr1_3:27801688-27801707 Msa0112660:intron 40.0%
ATTCCACATCTTCAAGGAGT+CGG + chr1_3:27801694-27801713 Msa0112660:intron 40.0%
!! GAATAAATGTGCTGACTGGT+TGG - chr1_3:27801741-27801760 None:intergenic 40.0%
GAAGCTTTCTTCTCTTCCAT+GGG - chr1_3:27801795-27801814 None:intergenic 40.0%
AGAGAAAGCAAAGTTGCATG+AGG + chr1_3:27801821-27801840 Msa0112660:intron 40.0%
!!! CCAGAAATTTTGACTTACGG+GGG + chr1_3:27801900-27801919 Msa0112660:intron 40.0%
ATAACGCGGAGAAATTAGTG+GGG + chr1_3:27802263-27802282 Msa0112660:intron 40.0%
GTGCAGAGCTACGAATTTAT+TGG - chr1_3:27802419-27802438 None:intergenic 40.0%
AATAGGGGGAATTGGATTCA+TGG - chr1_3:27802456-27802475 None:intergenic 40.0%
TGAGAAACAATAGGGGGAAT+TGG - chr1_3:27802464-27802483 None:intergenic 40.0%
!! AATCCTGGTAATGCAGGTTT+TGG - chr1_3:27802495-27802514 None:intergenic 40.0%
! CTTGATAATCCTGGTAATGC+AGG - chr1_3:27802501-27802520 None:intergenic 40.0%
! GGATCTTCTCTTGATAATCC+TGG - chr1_3:27802510-27802529 None:intergenic 40.0%
TTAATAAAGCCTTCCGGTAG+AGG + chr1_3:27802543-27802562 Msa0112660:intron 40.0%
!! GAATAATGGGTTCATGCTCT+TGG - chr1_3:27802612-27802631 None:intergenic 40.0%
TATTTATGTGCCAGTACTCC+AGG + chr1_3:27802759-27802778 Msa0112660:intron 40.0%
ATTTATGTGCCAGTACTCCA+GGG + chr1_3:27802760-27802779 Msa0112660:intron 40.0%
!!! GTTCCTTTTGGGTTTTTTGC+AGG + chr1_3:27802824-27802843 Msa0112660:intron 40.0%
CTACCTGCAAAAAACCCAAA+AGG - chr1_3:27802830-27802849 None:intergenic 40.0%
AACAATTGGATGGCCCTTTG+AGG + chr1_3:27799135-27799154 Msa0112660:CDS 45.0%
!! TGGGTTATTGGCTCCTCAAA+GGG - chr1_3:27799151-27799170 None:intergenic 45.0%
!! ATGGGTTATTGGCTCCTCAA+AGG - chr1_3:27799152-27799171 None:intergenic 45.0%
GTGACCCTGAAGCTGTTTAT+GGG - chr1_3:27799170-27799189 None:intergenic 45.0%
AGTGACCCTGAAGCTGTTTA+TGG - chr1_3:27799171-27799190 None:intergenic 45.0%
! TCACTGCTTGTGGATTGTGA+GGG - chr1_3:27799264-27799283 None:intergenic 45.0%
AGGAAGAAGTGAACGAAGTG+AGG - chr1_3:27799361-27799380 None:intergenic 45.0%
GGAATTACAGAAGCAAGTCG+AGG + chr1_3:27799661-27799680 Msa0112660:CDS 45.0%
!! CGAGGGACTAGTTAAGAGAA+AGG + chr1_3:27799679-27799698 Msa0112660:CDS 45.0%
TCTTCATCTCAGACCTTTGG+AGG + chr1_3:27799923-27799942 Msa0112660:CDS 45.0%
CTTCATCTCAGACCTTTGGA+GGG + chr1_3:27799924-27799943 Msa0112660:CDS 45.0%
TTAACGGAAGGGACCAAAAC+AGG - chr1_3:27800760-27800779 None:intergenic 45.0%
! CAACACACCAACCCAGATTT+TGG + chr1_3:27800823-27800842 Msa0112660:intron 45.0%
TTTGGTCCCAAAATCTGGGT+TGG - chr1_3:27801415-27801434 None:intergenic 45.0%
TTGCTGGCGATGAATGATGA+AGG - chr1_3:27800922-27800941 None:intergenic 45.0%
AAAGAACAGCTGCACAGAGA+TGG - chr1_3:27801121-27801140 None:intergenic 45.0%
!!! CTGCAGTTTTTTCGGTACTG+TGG + chr1_3:27801151-27801170 Msa0112660:intron 45.0%
GGGGGAAACGAAAATGAAGA+TGG + chr1_3:27801184-27801203 Msa0112660:intron 45.0%
TTTGGTCCCAAAATCTGGGT+TGG + chr1_3:27801415-27801434 Msa0112660:intron 45.0%
TTGGTCCCAAAATCTGGGTT+GGG + chr1_3:27801416-27801435 Msa0112660:intron 45.0%
! AACACCCCAACCCAGATTTT+GGG - chr1_3:27801424-27801443 None:intergenic 45.0%
!!! CGAATACCTCTGGGGTTTTT+AGG - chr1_3:27801640-27801659 None:intergenic 45.0%
GAATTCTCCTCCTCCTCAAT+TGG - chr1_3:27801678-27801697 None:intergenic 45.0%
!! ATACCGACTCCTTGAAGATG+TGG - chr1_3:27801700-27801719 None:intergenic 45.0%
! GCTGACTGGTTGGCTAAATT+TGG - chr1_3:27801731-27801750 None:intergenic 45.0%
TGACTAAATGAGACCACCCA+TGG + chr1_3:27801776-27801795 Msa0112660:intron 45.0%
GGAAGCTTTCTTCTCTTCCA+TGG - chr1_3:27801796-27801815 None:intergenic 45.0%
AGATCCAAAGCAGTCAGTGA+CGG + chr1_3:27801875-27801894 Msa0112660:intron 45.0%
CCCCCGTAAGTCAAAATTTC+TGG - chr1_3:27801903-27801922 None:intergenic 45.0%
TAACGCGGAGAAATTAGTGG+GGG + chr1_3:27802264-27802283 Msa0112660:intron 45.0%
!! ATCCACTTGTAGTGGATTGG+AGG - chr1_3:27802296-27802315 None:intergenic 45.0%
!! CGAATCCACTTGTAGTGGAT+TGG - chr1_3:27802299-27802318 None:intergenic 45.0%
! AAGTGACTAGTCAAGTGCGT+TGG - chr1_3:27802572-27802591 None:intergenic 45.0%
TTTATGTGCCAGTACTCCAG+GGG + chr1_3:27802761-27802780 Msa0112660:intron 45.0%
!!! TTTTTTTAAAAGAAAAATAT+TGG + chr1_3:27802695-27802714 Msa0112660:intron 5.0%
! GTCACTGCTTGTGGATTGTG+AGG - chr1_3:27799265-27799284 None:intergenic 50.0%
CAATCCACAAGCAGTGACCT+TGG + chr1_3:27799267-27799286 Msa0112660:CDS 50.0%
CAAGCTTCTTGACCATGCCA+AGG - chr1_3:27799287-27799306 None:intergenic 50.0%
! ATCTCAGACCTTTGGAGGGA+GGG + chr1_3:27799928-27799947 Msa0112660:CDS 50.0%
ATAGAAGACCCTCCCTCCAA+AGG - chr1_3:27799939-27799958 None:intergenic 50.0%
TCGGTACTGTGGATGAGGTT+TGG + chr1_3:27801162-27801181 Msa0112660:intron 50.0%
CGGTACTGTGGATGAGGTTT+GGG + chr1_3:27801163-27801182 Msa0112660:intron 50.0%
GGTACTGTGGATGAGGTTTG+GGG + chr1_3:27801164-27801183 Msa0112660:intron 50.0%
GTACTGTGGATGAGGTTTGG+GGG + chr1_3:27801165-27801184 Msa0112660:intron 50.0%
TACTGTGGATGAGGTTTGGG+GGG + chr1_3:27801166-27801185 Msa0112660:intron 50.0%
TGAAGATGGGGAGAGAGAGA+TGG + chr1_3:27801198-27801217 Msa0112660:intron 50.0%
ATGGGGAGAGAGAGATGGAA+TGG + chr1_3:27801203-27801222 Msa0112660:intron 50.0%
TGGGGAGAGAGAGATGGAAT+GGG + chr1_3:27801204-27801223 Msa0112660:intron 50.0%
TGGTCCCAAAATCTGGGTTG+GGG + chr1_3:27801417-27801436 Msa0112660:intron 50.0%
! CAACACCCCAACCCAGATTT+TGG - chr1_3:27801425-27801444 None:intergenic 50.0%
TCCTGCTTGCGAATACCTCT+GGG - chr1_3:27801649-27801668 None:intergenic 50.0%
ATCCTGCTTGCGAATACCTC+TGG - chr1_3:27801650-27801669 None:intergenic 50.0%
GCTTTCTTCTCTTCCATGGG+TGG - chr1_3:27801792-27801811 None:intergenic 50.0%
TGCCTCCAATCCACTACAAG+TGG + chr1_3:27802291-27802310 Msa0112660:intron 50.0%
AGGCACGAATCCACTTGTAG+TGG - chr1_3:27802304-27802323 None:intergenic 50.0%
CTGACTCTCAGACTGCTTTC+AGG - chr1_3:27802324-27802343 None:intergenic 50.0%
AAAGGGTCTTCAGTTGGCGT+GGG - chr1_3:27802377-27802396 None:intergenic 50.0%
!! CCTGGTAATGCAGGTTTTGG+AGG - chr1_3:27802492-27802511 None:intergenic 50.0%
CCTCCAAAACCTGCATTACC+AGG + chr1_3:27802489-27802508 Msa0112660:intron 50.0%
AGTGCGTTGGAATCCTCTAC+CGG - chr1_3:27802559-27802578 None:intergenic 50.0%
CATGCCAAGGTCACTGCTTG+TGG - chr1_3:27799274-27799293 None:intergenic 55.0%
CACAAGCAGTGACCTTGGCA+TGG + chr1_3:27799272-27799291 Msa0112660:CDS 55.0%
! CATCTCAGACCTTTGGAGGG+AGG + chr1_3:27799927-27799946 Msa0112660:CDS 55.0%
ACAGCTGCACAGAGATGGAG+AGG - chr1_3:27801116-27801135 None:intergenic 55.0%
GGGGAGAGAGAGATGGAATG+GGG + chr1_3:27801205-27801224 Msa0112660:intron 55.0%
GGGAGAGAGAGATGGAATGG+GGG + chr1_3:27801206-27801225 Msa0112660:intron 55.0%
GGAGAGAGAGATGGAATGGG+GGG + chr1_3:27801207-27801226 Msa0112660:intron 55.0%
AGAGAGATGGAATGGGGGGT+AGG + chr1_3:27801211-27801230 Msa0112660:intron 55.0%
!! GGGGTTTTTAGGCAGCGGAT+CGG - chr1_3:27801629-27801648 None:intergenic 55.0%
!!! CCTCTGGGGTTTTTAGGCAG+CGG - chr1_3:27801634-27801653 None:intergenic 55.0%
CCTGCTTGCGAATACCTCTG+GGG - chr1_3:27801648-27801667 None:intergenic 55.0%
! GGATCCGTCACTGACTGCTT+TGG - chr1_3:27801882-27801901 None:intergenic 55.0%
GAAAGGGTCTTCAGTTGGCG+TGG - chr1_3:27802378-27802397 None:intergenic 55.0%
CGTTGGAATCCTCTACCGGA+AGG - chr1_3:27802555-27802574 None:intergenic 55.0%
AGTACTCCAGGGGAGAGATG+CGG + chr1_3:27802771-27802790 Msa0112660:intron 55.0%
CCGCTGCCTAAAAACCCCAG+AGG + chr1_3:27801631-27801650 Msa0112660:intron 60.0%
!! CCCCAGAGGTATTCGCAAGC+AGG + chr1_3:27801645-27801664 Msa0112660:intron 60.0%
GCATCTCTCCCCTGGAGTAC+TGG - chr1_3:27802772-27802791 None:intergenic 60.0%
AGTACTCCGCATCTCTCCCC+TGG - chr1_3:27802780-27802799 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 27799106 27802941 27799106 ID=Msa0112660;Name=Msa0112660
chr1_3 mRNA 27799106 27802941 27799106 ID=Msa0112660-mRNA-1;Parent=Msa0112660;Name=Msa0112660-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|4|0|234
chr1_3 exon 27799106 27799184 27799106 ID=Msa0112660-mRNA-1:exon:9218;Parent=Msa0112660-mRNA-1
chr1_3 exon 27799229 27799395 27799229 ID=Msa0112660-mRNA-1:exon:9219;Parent=Msa0112660-mRNA-1
chr1_3 exon 27799611 27799973 27799611 ID=Msa0112660-mRNA-1:exon:9220;Parent=Msa0112660-mRNA-1
chr1_3 exon 27802846 27802941 27802846 ID=Msa0112660-mRNA-1:exon:9221;Parent=Msa0112660-mRNA-1
chr1_3 CDS 27799106 27799184 27799106 ID=Msa0112660-mRNA-1:cds;Parent=Msa0112660-mRNA-1
chr1_3 CDS 27799229 27799395 27799229 ID=Msa0112660-mRNA-1:cds;Parent=Msa0112660-mRNA-1
chr1_3 CDS 27799611 27799973 27799611 ID=Msa0112660-mRNA-1:cds;Parent=Msa0112660-mRNA-1
chr1_3 CDS 27802846 27802941 27802846 ID=Msa0112660-mRNA-1:cds;Parent=Msa0112660-mRNA-1
Gene Sequence

>Msa0112660

ATGTTAGCGATATCTCCTCCTATGTTTTCAACAATTGGATGGCCCTTTGAGGAGCCAATAACCCATAAACAGCTTCAGGATCAATTTGAGGCAGAAATTAATTCAAAAGATCCCTCACAATCCACAAGCAGTGACCTTGGCATGGTCAAGAAGCTTGTTCATAATGCTAGTGAACGCGATCGCCGCAAAAAAATCAATAATTTGTATTCCTCACTTCGTTCACTTCTTCCTGTTTCAGATCAAATGAAGAAATTGAGCATTCCGGGAACAATTTCAAAAGTCCTTAAATACATACTGGAATTACAGAAGCAAGTCGAGGGACTAGTTAAGAGAAAGGATGAGATCTTATTGAGACTTTTTCCACAAGTAGATGAGGTGATCATGAACAAAGAATCTCAAAGGAAGAAACATAGTTACAACTCTGGTTTTGTAGTTTCAACAAGTAGGCTCAATGATAGTGAAATTACCACTCAGATTTCATGTTACACTGTACACAAGATTCCACTTTCTGAGATCTTGATATGTTTGGAAAATGATGGCCTTTTGCTTCTTAATCTTTCTTCATCTCAGACCTTTGGAGGGAGGGTCTTCTATAATTTGCATTTCCAGGTAGATAAAACACAAAGATTAGAATCCGAAATTCTAAATGAGAAGCTCTTATCAATAATGGATAAGGAAGGGATATTTGAAGTCAACAATGATTAG
Protein sequence

>Msa0112660

MLAISPPMFSTIGWPFEEPITHKQLQDQFEAEINSKDPSQSTSSDLGMVKKLVHNASERDRRKKINNLYSSLRSLLPVSDQMKKLSIPGTISKVLKYILELQKQVEGLVKRKDEILLRLFPQVDEVIMNKESQRKKHSYNSGFVVSTSRLNDSEITTQISCYTVHKIPLSEILICLENDGLLLLNLSSSQTFGGRVFYNLHFQVDKTQRLESEILNEKLLSIMDKEGIFEVNND*