Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112840 | RHN78230.1 | 64.377 | 393 | 62 | 5 | 1 | 316 | 1 | 392 | 6.88e-158 | 459 |
| Msa0112840 | RHN78230.1 | 73.832 | 107 | 27 | 1 | 276 | 381 | 285 | 391 | 1.75e-38 | 152 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112840 | A0A396JJ07 | 64.377 | 393 | 62 | 5 | 1 | 316 | 1 | 392 | 3.29e-158 | 459 |
| Msa0112840 | A0A396JJ07 | 73.832 | 107 | 27 | 1 | 276 | 381 | 285 | 391 | 8.37e-39 | 152 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0112840 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112840 | MtrunA17_Chr1g0163251 | 64.377 | 393 | 62 | 5 | 1 | 316 | 1 | 392 | 6.33e-162 | 459 |
| Msa0112840 | MtrunA17_Chr1g0163251 | 73.832 | 107 | 27 | 1 | 276 | 381 | 285 | 391 | 1.61e-42 | 152 |
| Msa0112840 | MtrunA17_Chr1g0163181 | 39.583 | 336 | 108 | 9 | 1 | 245 | 1 | 332 | 9.74e-62 | 204 |
| Msa0112840 | MtrunA17_Chr1g0163201 | 38.129 | 278 | 90 | 6 | 20 | 215 | 18 | 295 | 1.80e-44 | 158 |
| Msa0112840 | MtrunA17_Chr1g0163231 | 34.982 | 283 | 104 | 7 | 1 | 206 | 1 | 280 | 2.71e-37 | 136 |
| Msa0112840 | MtrunA17_Chr1g0163261 | 31.000 | 300 | 117 | 6 | 1 | 216 | 1 | 294 | 1.32e-35 | 132 |
| Msa0112840 | MtrunA17_Chr1g0163191 | 48.101 | 158 | 31 | 2 | 1 | 107 | 1 | 158 | 3.35e-34 | 124 |
| Msa0112840 | MtrunA17_Chr1g0171611 | 36.194 | 268 | 109 | 7 | 1 | 206 | 1 | 268 | 5.96e-34 | 127 |
| Msa0112840 | MtrunA17_Chr1g0163241 | 48.701 | 154 | 32 | 5 | 6 | 117 | 12 | 160 | 7.63e-30 | 112 |
| Msa0112840 | MtrunA17_Chr1g0162151 | 47.222 | 72 | 38 | 0 | 147 | 218 | 61 | 132 | 6.83e-17 | 79.0 |
| Msa0112840 | MtrunA17_Chr1g0163091 | 45.833 | 72 | 39 | 0 | 147 | 218 | 61 | 132 | 8.60e-16 | 74.3 |
| Msa0112840 | MtrunA17_Chr6g0476171 | 46.835 | 79 | 42 | 0 | 138 | 216 | 68 | 146 | 1.38e-15 | 75.9 |
| Msa0112840 | MtrunA17_Chr1g0163151 | 46.377 | 69 | 37 | 0 | 147 | 215 | 56 | 124 | 2.01e-14 | 72.0 |
| Msa0112840 | MtrunA17_Chr1g0163111 | 36.190 | 105 | 56 | 3 | 147 | 250 | 53 | 147 | 3.06e-14 | 71.6 |
| Msa0112840 | MtrunA17_Chr1g0163101 | 62.500 | 40 | 15 | 0 | 14 | 53 | 26 | 65 | 2.33e-11 | 62.4 |
| Msa0112840 | MtrunA17_Chr1g0163131 | 58.537 | 41 | 17 | 0 | 14 | 54 | 27 | 67 | 2.85e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 63 sgRNAs with CRISPR-Local
Find 497 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTTCAAGGTTAAGATATT+TGG | 0.184615 | 1_3:+28357591 | Msa0112840:intron |
| TTTGGGAATTTAAGAAATAT+TGG | 0.205926 | 1_3:-28357441 | None:intergenic |
| CCATGGGAAGCATGCTCTTT+TGG | 0.216932 | 1_3:-28365410 | None:intergenic |
| CCTTGAAGAGCTTGCACTTT+TGG | 0.221116 | 1_3:-28364722 | None:intergenic |
| CCCCGAAGAGCATGCACTTT+TGG | 0.246328 | 1_3:-28364912 | None:intergenic |
| CCCTGGAGAGCATGCACTTT+TGG | 0.251459 | 1_3:-28365103 | None:intergenic |
| CTTAGGGTTTGGTCCCTTGA+TGG | 0.254887 | 1_3:-28364155 | None:intergenic |
| TCCAAAAGTGCATGCTCTTC+GGG | 0.257450 | 1_3:+28364911 | Msa0112840:CDS |
| AGAAATATGTGGAGAAATAT+TGG | 0.283749 | 1_3:+28357403 | Msa0112840:CDS |
| ATATTTCTCCACATATTTCT+TGG | 0.307927 | 1_3:-28357400 | None:intergenic |
| CAATATTATCCTATGAAAAT+CGG | 0.317709 | 1_3:-28357248 | None:intergenic |
| TTGGGAATTTAAGAAATATT+GGG | 0.338883 | 1_3:-28357440 | None:intergenic |
| CCTTGCAACTTCTTAGGGTT+TGG | 0.347894 | 1_3:-28364166 | None:intergenic |
| TTCCAAAAGTGCATGCTCTT+CGG | 0.354458 | 1_3:+28364910 | Msa0112840:CDS |
| CTATGAAAATCGGGGATATA+CGG | 0.356712 | 1_3:-28357238 | None:intergenic |
| GTTATCATTTGAGCTTGCTT+TGG | 0.364152 | 1_3:-28357723 | None:intergenic |
| TATAAAGAAGGGATCTCTTC+TGG | 0.374152 | 1_3:+28364298 | Msa0112840:CDS |
| TATTTCTCCACATATTTCTT+GGG | 0.381095 | 1_3:-28357399 | None:intergenic |
| TATAAAGAAGGGATCTCTTA+TGG | 0.386855 | 1_3:+28364647 | Msa0112840:CDS |
| CCAAAAGTGCAAGCTCTTCA+AGG | 0.388417 | 1_3:+28364722 | Msa0112840:CDS |
| CAAGCTCAAATGATAACAAA+TGG | 0.409712 | 1_3:+28357729 | Msa0112840:CDS |
| AATATTATCCTATGAAAATC+GGG | 0.414910 | 1_3:-28357247 | None:intergenic |
| TCCAAAAGTGCATGCTCTCC+AGG | 0.424580 | 1_3:+28365102 | Msa0112840:CDS |
| TTGATAATAATATTCTAAAG+AGG | 0.476009 | 1_3:+28365050 | Msa0112840:CDS |
| TCTTCTAATTCTATGACTAC+TGG | 0.476068 | 1_3:+28364028 | Msa0112840:CDS |
| TACTATTACTAAAGCCATCA+AGG | 0.479367 | 1_3:+28364141 | Msa0112840:CDS |
| CCATGACAAGGTTATAAAGA+AGG | 0.491612 | 1_3:+28364286 | Msa0112840:intron |
| CCATGACAAGGTTATAAAGA+AGG | 0.491612 | 1_3:+28364635 | Msa0112840:intron |
| CCATGACAAGGTTATAAAGA+AGG | 0.491612 | 1_3:+28364825 | Msa0112840:intron |
| ATATTTCTTAAATTCCCAAA+TGG | 0.492935 | 1_3:+28357444 | Msa0112840:CDS |
| AAGACGCTGGAGAAACTTGT+AGG | 0.502167 | 1_3:+28364693 | Msa0112840:CDS |
| ATAGTAATAGTGAATAAAAG+TGG | 0.509655 | 1_3:-28364124 | None:intergenic |
| CCATGACAAGGTTATAAAGA+AGG | 0.510696 | 1_3:+28365323 | Msa0112840:intron |
| AAGCTCAAATGATAACAAAT+GGG | 0.514121 | 1_3:+28357730 | Msa0112840:CDS |
| AAGACATTGGAGAAACTTGT+AGG | 0.516345 | 1_3:+28364883 | Msa0112840:CDS |
| AAGACATTGGAGAAACATCT+AGG | 0.517707 | 1_3:+28365381 | Msa0112840:CDS |
| ATGATCATGATATTCTAAAG+AGG | 0.534079 | 1_3:+28364859 | Msa0112840:CDS |
| ATTCTAAAGAGGAGAGACAC+TGG | 0.536518 | 1_3:+28364331 | Msa0112840:CDS |
| ATTCTAAAGAGGAGAGACAC+TGG | 0.536518 | 1_3:+28365061 | Msa0112840:CDS |
| TGCAAGCTTAAGAGTTGGAG+AGG | 0.542791 | 1_3:+28363964 | Msa0112840:intron |
| CATGACAAGGTTATAAAGAA+GGG | 0.548916 | 1_3:+28364826 | Msa0112840:intron |
| ATTCTAAAGAGGAAAGACAT+TGG | 0.551775 | 1_3:+28364870 | Msa0112840:CDS |
| TAACAAATCAACTCTAAAGC+AGG | 0.552761 | 1_3:+28357932 | Msa0112840:CDS |
| CATGACAAGGTTATAAAGAA+GGG | 0.554767 | 1_3:+28364287 | Msa0112840:intron |
| CATGACAAGGTTATAAAGAA+GGG | 0.554767 | 1_3:+28364636 | Msa0112840:intron |
| CTAATTCTATGACTACTGGT+TGG | 0.561386 | 1_3:+28364032 | Msa0112840:CDS |
| GAGACACTGGAGAAATTTGT+CGG | 0.563866 | 1_3:+28365074 | Msa0112840:CDS |
| AGAGGAGACAGCTATGAAAG+TGG | 0.577915 | 1_3:+28363982 | Msa0112840:CDS |
| GTGATCGTGATGTTCTAAAG+AGG | 0.587079 | 1_3:+28364669 | Msa0112840:CDS |
| ATTCTACCGTGGAAAGACAT+TGG | 0.588028 | 1_3:+28365368 | Msa0112840:CDS |
| CCAAAAGAGCATGCTTCCCA+TGG | 0.588789 | 1_3:+28365410 | Msa0112840:CDS |
| CCAAACCCTAAGAAGTTGCA+AGG | 0.590895 | 1_3:+28364166 | Msa0112840:CDS |
| GTGATCGTGATATTCTAAAG+AGG | 0.591830 | 1_3:+28364320 | Msa0112840:CDS |
| GAGGATTCCCAAGAAATATG+TGG | 0.594786 | 1_3:+28357392 | Msa0112840:intron |
| CCAAAAGTGCATGCTCTCCA+GGG | 0.599112 | 1_3:+28365103 | Msa0112840:CDS |
| GTTTCTCCAATGTCTTTCCA+CGG | 0.615143 | 1_3:-28365374 | None:intergenic |
| TATGTGGAGAAATATTGGAA+AGG | 0.617787 | 1_3:+28357408 | Msa0112840:CDS |
| ACTATTACTAAAGCCATCAA+GGG | 0.618938 | 1_3:+28364142 | Msa0112840:CDS |
| GTTCTAAAGAGGAAAGACGC+TGG | 0.637277 | 1_3:+28364680 | Msa0112840:CDS |
| CCAAAAGTGCATGCTCTTCG+GGG | 0.637566 | 1_3:+28364912 | Msa0112840:CDS |
| AAATCAACTCTAAAGCAGGT+AGG | 0.650077 | 1_3:+28357936 | Msa0112840:CDS |
| ATATTATCCTATGAAAATCG+GGG | 0.671225 | 1_3:-28357246 | None:intergenic |
| GTGATAAGCATATTCTACCG+TGG | 0.706198 | 1_3:+28365357 | Msa0112840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTTTAAATATATTGG+TGG | + | chr1_3:28357564-28357583 | Msa0112840:intron | 10.0% |
| !!! | TATATTATTTTAATGAGAAA+TGG | - | chr1_3:28358530-28358549 | None:intergenic | 10.0% |
| !!! | ATTTTTGAAAAAAAAAAAAG+GGG | - | chr1_3:28361039-28361058 | None:intergenic | 10.0% |
| !!! | GATTTTTGAAAAAAAAAAAA+GGG | - | chr1_3:28361040-28361059 | None:intergenic | 10.0% |
| !!! | TATATTATTTTAATGAGAAA+TGG | - | chr1_3:28358530-28358549 | None:intergenic | 10.0% |
| !! | TTAACTAAATAAAGAAATTA+AGG | - | chr1_3:28364431-28364450 | None:intergenic | 10.0% |
| !! | TTAACTAAATAAAGAAATTA+AGG | - | chr1_3:28364431-28364450 | None:intergenic | 10.0% |
| !! | TTAACTAAATAAAGAAATTA+AGG | - | chr1_3:28364431-28364450 | None:intergenic | 10.0% |
| !!! | TGTTCAACAAAAAATATTTT+GGG | + | chr1_3:28357467-28357486 | Msa0112840:CDS | 15.0% |
| !!! | ATATTTGGTTTCAAAAAAAT+TGG | + | chr1_3:28357505-28357524 | Msa0112840:intron | 15.0% |
| !!! | TATTTGGTTTCAAAAAAATT+GGG | + | chr1_3:28357506-28357525 | Msa0112840:intron | 15.0% |
| !!! | TAATACCATATTAATTTGAA+CGG | - | chr1_3:28358399-28358418 | None:intergenic | 15.0% |
| !! | AAAAAAATTGAAGTAATTCT+TGG | - | chr1_3:28360519-28360538 | None:intergenic | 15.0% |
| !!! | TTACTTCAATTTTTTTGTTT+AGG | + | chr1_3:28360523-28360542 | Msa0112840:intron | 15.0% |
| !! | AAGTTAGATAATTATTTGAA+TGG | - | chr1_3:28360748-28360767 | None:intergenic | 15.0% |
| !!! | GGATTTTTGAAAAAAAAAAA+AGG | - | chr1_3:28361041-28361060 | None:intergenic | 15.0% |
| !! | TTTAAAAATTAAGAACTAGT+GGG | - | chr1_3:28361345-28361364 | None:intergenic | 15.0% |
| !!! | ACTAGTTCTTAATTTTTAAA+GGG | + | chr1_3:28361345-28361364 | Msa0112840:intron | 15.0% |
| !! | AAATTGTCTAATTATAACAT+TGG | + | chr1_3:28361885-28361904 | Msa0112840:intron | 15.0% |
| !!! | TTAATTTTATACGAAACATT+TGG | + | chr1_3:28362103-28362122 | Msa0112840:intron | 15.0% |
| !!! | TATCCTTTTCTTTTATATTA+AGG | + | chr1_3:28362652-28362671 | Msa0112840:intron | 15.0% |
| !!! | ATCCTTTTCTTTTATATTAA+GGG | + | chr1_3:28362653-28362672 | Msa0112840:intron | 15.0% |
| !!! | TAATACCATATTAATTTGAA+CGG | - | chr1_3:28358399-28358418 | None:intergenic | 15.0% |
| !!! | TTGATAATAATATTCTAAAG+AGG | + | chr1_3:28365050-28365069 | Msa0112840:CDS | 15.0% |
| !! | AATATTATCCTATGAAAATC+GGG | - | chr1_3:28357250-28357269 | None:intergenic | 20.0% |
| !! | CAATATTATCCTATGAAAAT+CGG | - | chr1_3:28357251-28357270 | None:intergenic | 20.0% |
| !! | TTGGGAATTTAAGAAATATT+GGG | - | chr1_3:28357443-28357462 | None:intergenic | 20.0% |
| !! | TTTGGGAATTTAAGAAATAT+TGG | - | chr1_3:28357444-28357463 | None:intergenic | 20.0% |
| !! | ATATTTCTTAAATTCCCAAA+TGG | + | chr1_3:28357444-28357463 | Msa0112840:CDS | 20.0% |
| !!! | GTGTTCAACAAAAAATATTT+TGG | + | chr1_3:28357466-28357485 | Msa0112840:CDS | 20.0% |
| !! | TATTTCAAGGTTAAGATATT+TGG | + | chr1_3:28357591-28357610 | Msa0112840:intron | 20.0% |
| !!! | TTCATCAACAGATTTTATAT+TGG | - | chr1_3:28357643-28357662 | None:intergenic | 20.0% |
| !! | AAGGAAACATGATATTAAAA+AGG | - | chr1_3:28357825-28357844 | None:intergenic | 20.0% |
| !!! | ACAAGTAAATTCATTTTCAA+AGG | - | chr1_3:28357844-28357863 | None:intergenic | 20.0% |
| !! | GTCATTAAAACTTCAAAAAA+GGG | - | chr1_3:28358040-28358059 | None:intergenic | 20.0% |
| !! | TGTCATTAAAACTTCAAAAA+AGG | - | chr1_3:28358041-28358060 | None:intergenic | 20.0% |
| !! | GAAATTCAAATTTAACAGTT+TGG | - | chr1_3:28358117-28358136 | None:intergenic | 20.0% |
| !! | GTATTATTACCATTCTATTA+TGG | + | chr1_3:28358413-28358432 | Msa0112840:intron | 20.0% |
| !!! | ATTATTTTAATGAGAAATGG+TGG | - | chr1_3:28358527-28358546 | None:intergenic | 20.0% |
| !! | TTCGATAATATATGATTCTT+CGG | - | chr1_3:28358604-28358623 | None:intergenic | 20.0% |
| !! | AAGAATCATATATTATCGAA+GGG | + | chr1_3:28358604-28358623 | Msa0112840:intron | 20.0% |
| !! | ACTAGTAAGTGTTTATATAT+GGG | - | chr1_3:28359061-28359080 | None:intergenic | 20.0% |
| !! | AACTAGTAAGTGTTTATATA+TGG | - | chr1_3:28359062-28359081 | None:intergenic | 20.0% |
| !! | ATATATAAACACTTACTAGT+TGG | + | chr1_3:28359061-28359080 | Msa0112840:intron | 20.0% |
| !! | TATATAAACACTTACTAGTT+GGG | + | chr1_3:28359062-28359081 | Msa0112840:intron | 20.0% |
| !!! | TAAGATTTGCTAATTTACAA+AGG | + | chr1_3:28359230-28359249 | Msa0112840:intron | 20.0% |
| !! | ATTAAGAATCGTTATTACAA+TGG | - | chr1_3:28359885-28359904 | None:intergenic | 20.0% |
| !! | AGTAACATATTGTACTTAAA+TGG | - | chr1_3:28360166-28360185 | None:intergenic | 20.0% |
| !! | TTAAAAATTAAGAACTAGTG+GGG | - | chr1_3:28361344-28361363 | None:intergenic | 20.0% |
| !!! | CTTTAAAAATTAAGAACTAG+TGG | - | chr1_3:28361346-28361365 | None:intergenic | 20.0% |
| !!! | CACTAGTTCTTAATTTTTAA+AGG | + | chr1_3:28361344-28361363 | Msa0112840:intron | 20.0% |
| !!! | CTAGTTCTTAATTTTTAAAG+GGG | + | chr1_3:28361346-28361365 | Msa0112840:intron | 20.0% |
| !! | TTGTAAATTAAAGAATAGTG+GGG | - | chr1_3:28361396-28361415 | None:intergenic | 20.0% |
| !! | CTTGTAAATTAAAGAATAGT+GGG | - | chr1_3:28361397-28361416 | None:intergenic | 20.0% |
| !!! | CACTATTCTTTAATTTACAA+GGG | + | chr1_3:28361396-28361415 | Msa0112840:intron | 20.0% |
| !!! | ATCAACATCTTTTAATTCTA+TGG | + | chr1_3:28361435-28361454 | Msa0112840:intron | 20.0% |
| !! | TTATAAATAACGAAGCATAT+AGG | - | chr1_3:28361486-28361505 | None:intergenic | 20.0% |
| !!! | TTCTGATTTATATGAACTTT+TGG | + | chr1_3:28361836-28361855 | Msa0112840:intron | 20.0% |
| !!! | CTTTTTAAATTTGAGTAACT+TGG | - | chr1_3:28361919-28361938 | None:intergenic | 20.0% |
| !! | TTCATAAAAAAAAAACAGTG+TGG | + | chr1_3:28362151-28362170 | Msa0112840:intron | 20.0% |
| !! | ACGTAAAATAAGAAAATGTT+TGG | - | chr1_3:28362444-28362463 | None:intergenic | 20.0% |
| !!! | GTCTTAAAATTGTTGTTTTT+TGG | + | chr1_3:28362727-28362746 | Msa0112840:intron | 20.0% |
| !! | GAAATTCAAATTTAACAGTT+TGG | - | chr1_3:28358117-28358136 | None:intergenic | 20.0% |
| !! | GTATTATTACCATTCTATTA+TGG | + | chr1_3:28358413-28358432 | Msa0112840:intron | 20.0% |
| !!! | ATTATTTTAATGAGAAATGG+TGG | - | chr1_3:28358527-28358546 | None:intergenic | 20.0% |
| !! | TTCGATAATATATGATTCTT+CGG | - | chr1_3:28358604-28358623 | None:intergenic | 20.0% |
| !! | AAGAATCATATATTATCGAA+GGG | + | chr1_3:28358604-28358623 | Msa0112840:intron | 20.0% |
| !! | ACTAGTAAGTGTTTATATAT+GGG | - | chr1_3:28359061-28359080 | None:intergenic | 20.0% |
| !! | AACTAGTAAGTGTTTATATA+TGG | - | chr1_3:28359062-28359081 | None:intergenic | 20.0% |
| !! | ATATATAAACACTTACTAGT+TGG | + | chr1_3:28359061-28359080 | Msa0112840:intron | 20.0% |
| !! | TATATAAACACTTACTAGTT+GGG | + | chr1_3:28359062-28359081 | Msa0112840:intron | 20.0% |
| !! | TCTAAAAATGTCTACTAATT+TGG | + | chr1_3:28363838-28363857 | Msa0112840:intron | 20.0% |
| !! | CACTAATCTATAATAAAATG+TGG | + | chr1_3:28363874-28363893 | Msa0112840:intron | 20.0% |
| !!! | CAACTTCTAAGTTATATTTT+TGG | - | chr1_3:28364069-28364088 | None:intergenic | 20.0% |
| !! | CAAAAATATAACTTAGAAGT+TGG | + | chr1_3:28364067-28364086 | Msa0112840:CDS | 20.0% |
| !! | ATAGTAATAGTGAATAAAAG+TGG | - | chr1_3:28364127-28364146 | None:intergenic | 20.0% |
| ! | ATATTATCCTATGAAAATCG+GGG | - | chr1_3:28357249-28357268 | None:intergenic | 25.0% |
| ! | TATTTCTCCACATATTTCTT+GGG | - | chr1_3:28357402-28357421 | None:intergenic | 25.0% |
| ! | ATATTTCTCCACATATTTCT+TGG | - | chr1_3:28357403-28357422 | None:intergenic | 25.0% |
| ! | AGAAATATGTGGAGAAATAT+TGG | + | chr1_3:28357403-28357422 | Msa0112840:CDS | 25.0% |
| !!! | TTTTTTGTTGAACACCATTT+GGG | - | chr1_3:28357461-28357480 | None:intergenic | 25.0% |
| !!! | ATTTTTTGTTGAACACCATT+TGG | - | chr1_3:28357462-28357481 | None:intergenic | 25.0% |
| !!! | TCAACAAAAAATATTTTGGG+TGG | + | chr1_3:28357470-28357489 | Msa0112840:intron | 25.0% |
| ! | AAGCTCAAATGATAACAAAT+GGG | + | chr1_3:28357730-28357749 | Msa0112840:CDS | 25.0% |
| ! | AAAAAAGGGATTCTCATTAT+TGG | - | chr1_3:28358026-28358045 | None:intergenic | 25.0% |
| ! | GAAGAATCATATATTATCGA+AGG | + | chr1_3:28358603-28358622 | Msa0112840:intron | 25.0% |
| !!! | GAAACTTGTTAAAAACAAGT+CGG | + | chr1_3:28358706-28358725 | Msa0112840:intron | 25.0% |
| ! | GTTTCTTAATTGGATATATC+CGG | + | chr1_3:28358883-28358902 | Msa0112840:intron | 25.0% |
| ! | ATATAAACACTTACTAGTTG+GGG | + | chr1_3:28359063-28359082 | Msa0112840:intron | 25.0% |
| ! | GTTAATTCTAGTGAAGAAAT+TGG | - | chr1_3:28359156-28359175 | None:intergenic | 25.0% |
| !! | TTTAGAATACACCTATGAAA+AGG | - | chr1_3:28359359-28359378 | None:intergenic | 25.0% |
| ! | AATATGTGATTGCAAGTTTA+CGG | + | chr1_3:28360410-28360429 | Msa0112840:intron | 25.0% |
| !! | CTGAAAATTTTTGCAATTCA+TGG | - | chr1_3:28360790-28360809 | None:intergenic | 25.0% |
| !! | CATGAATTGCAAAAATTTTC+AGG | + | chr1_3:28360788-28360807 | Msa0112840:intron | 25.0% |
| !! | ATGTGAAAGTTGTCTTTTTA+TGG | - | chr1_3:28360845-28360864 | None:intergenic | 25.0% |
| ! | CAAAATCAATCAGTTGTATT+TGG | - | chr1_3:28361062-28361081 | None:intergenic | 25.0% |
| ! | TAAAGAAGTTATATCCTCAT+TGG | - | chr1_3:28361175-28361194 | None:intergenic | 25.0% |
| ! | ATGAGGATATAACTTCTTTA+AGG | + | chr1_3:28361175-28361194 | Msa0112840:intron | 25.0% |
| ! | TAAAAATTAAGAACTAGTGG+GGG | - | chr1_3:28361343-28361362 | None:intergenic | 25.0% |
| ! | TGTAAATTAAAGAATAGTGG+GGG | - | chr1_3:28361395-28361414 | None:intergenic | 25.0% |
| ! | CCTTGTAAATTAAAGAATAG+TGG | - | chr1_3:28361398-28361417 | None:intergenic | 25.0% |
| !! | CCACTATTCTTTAATTTACA+AGG | + | chr1_3:28361395-28361414 | Msa0112840:intron | 25.0% |
| !!! | CTTGTCTTATTTTTGAACTT+GGG | - | chr1_3:28361592-28361611 | None:intergenic | 25.0% |
| !!! | ACTTGTCTTATTTTTGAACT+TGG | - | chr1_3:28361593-28361612 | None:intergenic | 25.0% |
| ! | AGTTCAAAAATAAGACAAGT+TGG | + | chr1_3:28361593-28361612 | Msa0112840:intron | 25.0% |
| !! | AGAATTTTTGTTCTTAGACT+TGG | + | chr1_3:28361645-28361664 | Msa0112840:intron | 25.0% |
| !! | GAATTTTTGTTCTTAGACTT+GGG | + | chr1_3:28361646-28361665 | Msa0112840:intron | 25.0% |
| ! | TACTGTTCGATAAAACTTAA+TGG | - | chr1_3:28362344-28362363 | None:intergenic | 25.0% |
| ! | CGTAACAAACTAAAATTGTT+TGG | + | chr1_3:28362461-28362480 | Msa0112840:intron | 25.0% |
| !! | CGTTGAATTTGTTTGAAATA+TGG | - | chr1_3:28362551-28362570 | None:intergenic | 25.0% |
| ! | GTCCCTTAATATAAAAGAAA+AGG | - | chr1_3:28362658-28362677 | None:intergenic | 25.0% |
| ! | ACCTCAATAAGTAATTTCTT+CGG | + | chr1_3:28362684-28362703 | Msa0112840:intron | 25.0% |
| ! | GAAGAATCATATATTATCGA+AGG | + | chr1_3:28358603-28358622 | Msa0112840:intron | 25.0% |
| !!! | GAAACTTGTTAAAAACAAGT+CGG | + | chr1_3:28358706-28358725 | Msa0112840:intron | 25.0% |
| ! | GTTTCTTAATTGGATATATC+CGG | + | chr1_3:28358883-28358902 | Msa0112840:intron | 25.0% |
| ! | ATATAAACACTTACTAGTTG+GGG | + | chr1_3:28359063-28359082 | Msa0112840:intron | 25.0% |
| ! | GTTAATTCTAGTGAAGAAAT+TGG | - | chr1_3:28359156-28359175 | None:intergenic | 25.0% |
| !!! | CATTTTTAGATAGTTACTGT+TGG | - | chr1_3:28363828-28363847 | None:intergenic | 25.0% |
| ! | TCATACTTGAACAAATTTGA+AGG | + | chr1_3:28363938-28363957 | Msa0112840:intron | 25.0% |
| ! | CATACTTGAACAAATTTGAA+GGG | + | chr1_3:28363939-28363958 | Msa0112840:intron | 25.0% |
| ! | GTTATGGATCAAAGAAATTA+AGG | - | chr1_3:28364464-28364483 | None:intergenic | 25.0% |
| ! | AATTTCTTTGATCCATAACA+AGG | + | chr1_3:28364465-28364484 | Msa0112840:intron | 25.0% |
| ! | TCTTCTTTATAACCTTGTTA+TGG | - | chr1_3:28364480-28364499 | None:intergenic | 25.0% |
| ! | GTCATGGATCAAAAAAATTA+AGG | - | chr1_3:28364622-28364641 | None:intergenic | 25.0% |
| !!! | AATTTTTTTGATCCATGACA+AGG | + | chr1_3:28364623-28364642 | Msa0112840:intron | 25.0% |
| !! | ATGATCATGATATTCTAAAG+AGG | + | chr1_3:28364859-28364878 | Msa0112840:CDS | 25.0% |
| ! | ACTTCTTTATAACCTTGTAA+GGG | - | chr1_3:28365019-28365038 | None:intergenic | 25.0% |
| ! | AACTTCTTTATAACCTTGTA+AGG | - | chr1_3:28365020-28365039 | None:intergenic | 25.0% |
| TATGTGGAGAAATATTGGAA+AGG | + | chr1_3:28357408-28357427 | Msa0112840:CDS | 30.0% | |
| !! | ATATTTTGGGTGGAGAATAA+TGG | + | chr1_3:28357480-28357499 | Msa0112840:intron | 30.0% |
| TGGAGAATAATGGTGATATT+TGG | + | chr1_3:28357490-28357509 | Msa0112840:intron | 30.0% | |
| TTTGCAAAGTCTCTCAAATA+TGG | + | chr1_3:28357534-28357553 | Msa0112840:intron | 30.0% | |
| ! | TATTGGTGGATCATATTTCA+AGG | + | chr1_3:28357578-28357597 | Msa0112840:intron | 30.0% |
| CAAGCTCAAATGATAACAAA+TGG | + | chr1_3:28357729-28357748 | Msa0112840:CDS | 30.0% | |
| !! | TAACAAATCAACTCTAAAGC+AGG | + | chr1_3:28357932-28357951 | Msa0112840:CDS | 30.0% |
| !!! | GGTAAGTAACTGTTGTTTTT+TGG | + | chr1_3:28358087-28358106 | Msa0112840:intron | 30.0% |
| AGAATTACACCCTCAAAATA+TGG | + | chr1_3:28358319-28358338 | Msa0112840:intron | 30.0% | |
| CGAAACCGTTCAAATTAATA+TGG | + | chr1_3:28358391-28358410 | Msa0112840:intron | 30.0% | |
| !!! | ATGTTTTGGAGAAGTTAGAA+TGG | - | chr1_3:28358469-28358488 | None:intergenic | 30.0% |
| ACTTCTCCAAAACATGAATA+TGG | + | chr1_3:28358474-28358493 | Msa0112840:intron | 30.0% | |
| TTACAAACTCTCCCTATAAA+AGG | - | chr1_3:28358807-28358826 | None:intergenic | 30.0% | |
| TAACAAAAAACGAGTGACTT+GGG | + | chr1_3:28358824-28358843 | Msa0112840:intron | 30.0% | |
| !!! | AACGCGTTTTGTTTCTTAAT+TGG | + | chr1_3:28358873-28358892 | Msa0112840:intron | 30.0% |
| !!! | AAACCATTTTGAAGTCAAGT+GGG | - | chr1_3:28359196-28359215 | None:intergenic | 30.0% |
| ATCTATACTCTATGTTGAGT+GGG | - | chr1_3:28359524-28359543 | None:intergenic | 30.0% | |
| ! | TTAGAGAGTGTATCTCTAAA+TGG | - | chr1_3:28359827-28359846 | None:intergenic | 30.0% |
| TAAAATAAACTCCTGAGGAA+TGG | - | chr1_3:28360723-28360742 | None:intergenic | 30.0% | |
| AATTCATGGACAAGAAAACA+AGG | - | chr1_3:28360776-28360795 | None:intergenic | 30.0% | |
| ACTAGAAGAACAAGTCTATA+TGG | - | chr1_3:28360819-28360838 | None:intergenic | 30.0% | |
| GAGTACTATCGAGTTATAAA+TGG | + | chr1_3:28360872-28360891 | Msa0112840:intron | 30.0% | |
| TACTATCGAGTTATAAATGG+CGG | + | chr1_3:28360875-28360894 | Msa0112840:intron | 30.0% | |
| ! | GTTTAAAACCTTTGACTACA+AGG | + | chr1_3:28360977-28360996 | Msa0112840:intron | 30.0% |
| ! | CTATGGTCACTTTAACATTT+AGG | + | chr1_3:28361452-28361471 | Msa0112840:intron | 30.0% |
| CCTATGAATGTGTATTCATT+AGG | - | chr1_3:28361513-28361532 | None:intergenic | 30.0% | |
| CCTAATGAATACACATTCAT+AGG | + | chr1_3:28361510-28361529 | Msa0112840:intron | 30.0% | |
| ! | GTCTTGTTCTAATCTAAACA+AGG | - | chr1_3:28362243-28362262 | None:intergenic | 30.0% |
| ACCGAAGAAATTACTTATTG+AGG | - | chr1_3:28362688-28362707 | None:intergenic | 30.0% | |
| AGAATTACACCCTCAAAATA+TGG | + | chr1_3:28358319-28358338 | Msa0112840:intron | 30.0% | |
| CGAAACCGTTCAAATTAATA+TGG | + | chr1_3:28358391-28358410 | Msa0112840:intron | 30.0% | |
| !!! | ATGTTTTGGAGAAGTTAGAA+TGG | - | chr1_3:28358469-28358488 | None:intergenic | 30.0% |
| ACTTCTCCAAAACATGAATA+TGG | + | chr1_3:28358474-28358493 | Msa0112840:intron | 30.0% | |
| AAGAACACTCTTAATACTGA+AGG | + | chr1_3:28363300-28363319 | Msa0112840:intron | 30.0% | |
| AGAACACTCTTAATACTGAA+GGG | + | chr1_3:28363301-28363320 | Msa0112840:intron | 30.0% | |
| TTACAAACTCTCCCTATAAA+AGG | - | chr1_3:28358807-28358826 | None:intergenic | 30.0% | |
| TAACAAAAAACGAGTGACTT+GGG | + | chr1_3:28358824-28358843 | Msa0112840:intron | 30.0% | |
| !!! | AACGCGTTTTGTTTCTTAAT+TGG | + | chr1_3:28358873-28358892 | Msa0112840:intron | 30.0% |
| TGTGGTTCATGAATTGAAAT+AGG | + | chr1_3:28363892-28363911 | Msa0112840:intron | 30.0% | |
| TATGATCTTGAAAAGTTGCA+TGG | - | chr1_3:28363923-28363942 | None:intergenic | 30.0% | |
| TCTTCTAATTCTATGACTAC+TGG | + | chr1_3:28364028-28364047 | Msa0112840:CDS | 30.0% | |
| TACTATTACTAAAGCCATCA+AGG | + | chr1_3:28364141-28364160 | Msa0112840:CDS | 30.0% | |
| ACTATTACTAAAGCCATCAA+GGG | + | chr1_3:28364142-28364161 | Msa0112840:CDS | 30.0% | |
| AAAAACCTTGCAACTTCTTA+GGG | - | chr1_3:28364174-28364193 | None:intergenic | 30.0% | |
| AAAAAACCTTGCAACTTCTT+AGG | - | chr1_3:28364175-28364194 | None:intergenic | 30.0% | |
| TGTCATGGATCAAAGAAAAT+AGG | - | chr1_3:28364274-28364293 | None:intergenic | 30.0% | |
| ! | ATTTTCTTTGATCCATGACA+AGG | + | chr1_3:28364274-28364293 | Msa0112840:intron | 30.0% |
| CATGACAAGGTTATAAAGAA+GGG | + | chr1_3:28364287-28364306 | Msa0112840:intron | 30.0% | |
| CATGACAAGGTTATAAAGAA+GGG | + | chr1_3:28364287-28364306 | Msa0112840:intron | 30.0% | |
| TATAAAGAAGGGATCTCTTA+TGG | + | chr1_3:28364647-28364666 | Msa0112840:CDS | 30.0% | |
| GTCATGGATCAAAGAAATTA+AGG | - | chr1_3:28364812-28364831 | None:intergenic | 30.0% | |
| AATTTCTTTGATCCATGACA+AGG | + | chr1_3:28364813-28364832 | Msa0112840:intron | 30.0% | |
| CATGACAAGGTTATAAAGAA+GGG | + | chr1_3:28364287-28364306 | Msa0112840:intron | 30.0% | |
| ! | ATTCTAAAGAGGAAAGACAT+TGG | + | chr1_3:28364870-28364889 | Msa0112840:CDS | 30.0% |
| GTAAGGGATCAAAGAAATTA+AGG | - | chr1_3:28365003-28365022 | None:intergenic | 30.0% | |
| AATTTCTTTGATCCCTTACA+AGG | + | chr1_3:28365004-28365023 | Msa0112840:intron | 30.0% | |
| GTCATGGATCAAAGAAATTA+AGG | - | chr1_3:28364812-28364831 | None:intergenic | 30.0% | |
| AATTTCTTTGATCCATGACA+AGG | + | chr1_3:28364813-28364832 | Msa0112840:intron | 30.0% | |
| CTATGAAAATCGGGGATATA+CGG | - | chr1_3:28357241-28357260 | None:intergenic | 35.0% | |
| ATCCTCTGCAACAAGAAATT+GGG | - | chr1_3:28357378-28357397 | None:intergenic | 35.0% | |
| AATCCTCTGCAACAAGAAAT+TGG | - | chr1_3:28357379-28357398 | None:intergenic | 35.0% | |
| ! | GTTATCATTTGAGCTTGCTT+TGG | - | chr1_3:28357726-28357745 | None:intergenic | 35.0% |
| ACTCTTAAGCAAAAATTCCC+AGG | + | chr1_3:28357780-28357799 | Msa0112840:CDS | 35.0% | |
| ATCAAATGAAGTTCTCACCT+GGG | - | chr1_3:28357800-28357819 | None:intergenic | 35.0% | |
| AATCAAATGAAGTTCTCACC+TGG | - | chr1_3:28357801-28357820 | None:intergenic | 35.0% | |
| !! | AAATCAACTCTAAAGCAGGT+AGG | + | chr1_3:28357936-28357955 | Msa0112840:CDS | 35.0% |
| ACTTACCAAGATATGACCAT+GGG | - | chr1_3:28358074-28358093 | None:intergenic | 35.0% | |
| TACTTACCAAGATATGACCA+TGG | - | chr1_3:28358075-28358094 | None:intergenic | 35.0% | |
| CTTCGGTAGATGATAGAATT+TGG | - | chr1_3:28358139-28358158 | None:intergenic | 35.0% | |
| ACTCAACCTAGTAACAACTT+CGG | - | chr1_3:28358156-28358175 | None:intergenic | 35.0% | |
| TTAATCGAACAGTTGTAGCT+GGG | - | chr1_3:28358273-28358292 | None:intergenic | 35.0% | |
| !! | ACGATTGAGCCATATTTTGA+GGG | - | chr1_3:28358331-28358350 | None:intergenic | 35.0% |
| ! | AACGATTGAGCCATATTTTG+AGG | - | chr1_3:28358332-28358351 | None:intergenic | 35.0% |
| !! | TTTTGGAGAAGTTAGAATGG+TGG | - | chr1_3:28358466-28358485 | None:intergenic | 35.0% |
| ! | GTAGTGCCATATTCATGTTT+TGG | - | chr1_3:28358483-28358502 | None:intergenic | 35.0% |
| GACTATGAACTTAAGACCAA+GGG | + | chr1_3:28358626-28358645 | Msa0112840:intron | 35.0% | |
| AAGAACACTCTTAATACCGA+AGG | + | chr1_3:28358660-28358679 | Msa0112840:intron | 35.0% | |
| AGAACACTCTTAATACCGAA+GGG | + | chr1_3:28358661-28358680 | Msa0112840:intron | 35.0% | |
| ! | ACTTGTTAAAAACAAGTCGG+AGG | + | chr1_3:28358709-28358728 | Msa0112840:intron | 35.0% |
| CTTGTTAAAAACAAGTCGGA+GGG | + | chr1_3:28358710-28358729 | Msa0112840:intron | 35.0% | |
| !!! | AAGCATCGACTGTGAATTTT+CGG | + | chr1_3:28358755-28358774 | Msa0112840:intron | 35.0% |
| GTAACAAAAAACGAGTGACT+TGG | + | chr1_3:28358823-28358842 | Msa0112840:intron | 35.0% | |
| AACAAAAAACGAGTGACTTG+GGG | + | chr1_3:28358825-28358844 | Msa0112840:intron | 35.0% | |
| AAACAAAACGCGTTTGCTTA+AGG | - | chr1_3:28358867-28358886 | None:intergenic | 35.0% | |
| TAAAAATGTCCCACATTGGA+GGG | - | chr1_3:28359092-28359111 | None:intergenic | 35.0% | |
| TTAAAAATGTCCCACATTGG+AGG | - | chr1_3:28359093-28359112 | None:intergenic | 35.0% | |
| GACTTAAAAATGTCCCACAT+TGG | - | chr1_3:28359096-28359115 | None:intergenic | 35.0% | |
| CTATGAAAGAACTAGTGTGT+GGG | - | chr1_3:28359122-28359141 | None:intergenic | 35.0% | |
| ACTATGAAAGAACTAGTGTG+TGG | - | chr1_3:28359123-28359142 | None:intergenic | 35.0% | |
| !!! | AACCATTTTGAAGTCAAGTG+GGG | - | chr1_3:28359195-28359214 | None:intergenic | 35.0% |
| !!! | GAAACCATTTTGAAGTCAAG+TGG | - | chr1_3:28359197-28359216 | None:intergenic | 35.0% |
| !! | TATGCAAAGGTTCAAGTTGT+TGG | - | chr1_3:28359261-28359280 | None:intergenic | 35.0% |
| ATTCTGCCTTGAAATTCCAT+AGG | + | chr1_3:28359436-28359455 | Msa0112840:intron | 35.0% | |
| TCTATACTCTATGTTGAGTG+GGG | - | chr1_3:28359523-28359542 | None:intergenic | 35.0% | |
| GATCTATACTCTATGTTGAG+TGG | - | chr1_3:28359525-28359544 | None:intergenic | 35.0% | |
| GGTAATAACAAGTCATGAAG+TGG | - | chr1_3:28359629-28359648 | None:intergenic | 35.0% | |
| ! | TACCCATTGAACCTATTTCT+TGG | + | chr1_3:28359645-28359664 | Msa0112840:intron | 35.0% |
| ! | ACCCATTGAACCTATTTCTT+GGG | + | chr1_3:28359646-28359665 | Msa0112840:intron | 35.0% |
| TCCCAAGAAATAGGTTCAAT+GGG | - | chr1_3:28359650-28359669 | None:intergenic | 35.0% | |
| ATCCCAAGAAATAGGTTCAA+TGG | - | chr1_3:28359651-28359670 | None:intergenic | 35.0% | |
| CTATTAAGTCCTTTCGTCAA+AGG | + | chr1_3:28359755-28359774 | Msa0112840:intron | 35.0% | |
| ATGGTAAGAGACGACAAATA+AGG | - | chr1_3:28359866-28359885 | None:intergenic | 35.0% | |
| AATTCATTGTGATAGTACCG+CGG | - | chr1_3:28359919-28359938 | None:intergenic | 35.0% | |
| TCACAATGAATTAACACAGC+TGG | + | chr1_3:28359927-28359946 | Msa0112840:intron | 35.0% | |
| TGAATTAACACAGCTGGTAA+CGG | + | chr1_3:28359933-28359952 | Msa0112840:intron | 35.0% | |
| AAACTAGTGAAGAAGCAAGT+TGG | - | chr1_3:28359998-28360017 | None:intergenic | 35.0% | |
| ATCTCAGATTCATTCCATAG+TGG | + | chr1_3:28360032-28360051 | Msa0112840:intron | 35.0% | |
| !! | GACTCTAAGATTACTTCACT+AGG | - | chr1_3:28360189-28360208 | None:intergenic | 35.0% |
| ATGCTATAGAATGAGTCATG+AGG | - | chr1_3:28360229-28360248 | None:intergenic | 35.0% | |
| TCATGACTCATTCTATAGCA+TGG | + | chr1_3:28360228-28360247 | Msa0112840:intron | 35.0% | |
| AAGTTTACTAGTAGACGGAT+GGG | - | chr1_3:28360262-28360281 | None:intergenic | 35.0% | |
| TGTGCAAGTTTACTAGTAGA+CGG | - | chr1_3:28360267-28360286 | None:intergenic | 35.0% | |
| ACAGAATATACGAGCATCAT+TGG | - | chr1_3:28360350-28360369 | None:intergenic | 35.0% | |
| AAGTGTAAGAACACTTGAGA+TGG | - | chr1_3:28360383-28360402 | None:intergenic | 35.0% | |
| ATCTCAAGTGTTCTTACACT+TGG | + | chr1_3:28360382-28360401 | Msa0112840:intron | 35.0% | |
| ! | AATTTTTCATGCCATTCCTC+AGG | + | chr1_3:28360709-28360728 | Msa0112840:intron | 35.0% |
| ! | TGGTCTAAAATAAACTCCTG+AGG | - | chr1_3:28360728-28360747 | None:intergenic | 35.0% |
| AGACAACTTTCACATCCATT+TGG | + | chr1_3:28360850-28360869 | Msa0112840:intron | 35.0% | |
| TAACTCGATAGTACTCCAAA+TGG | - | chr1_3:28360868-28360887 | None:intergenic | 35.0% | |
| AGTTATAAATGGCGGCTAAA+GGG | + | chr1_3:28360883-28360902 | Msa0112840:intron | 35.0% | |
| ! | TAAAGGGACTAGTACTCTTA+TGG | + | chr1_3:28360899-28360918 | Msa0112840:intron | 35.0% |
| ! | ATGGATATGATTTTCGTGAC+TGG | + | chr1_3:28360918-28360937 | Msa0112840:intron | 35.0% |
| GTCTAACAAAACATGACACT+TGG | - | chr1_3:28361104-28361123 | None:intergenic | 35.0% | |
| ! | AACGCTAAAGAGTATGAACT+TGG | - | chr1_3:28361229-28361248 | None:intergenic | 35.0% |
| ACTAGTGAGTTTATCTCTCT+TGG | + | chr1_3:28361537-28361556 | Msa0112840:intron | 35.0% | |
| CTAGTGAGTTTATCTCTCTT+GGG | + | chr1_3:28361538-28361557 | Msa0112840:intron | 35.0% | |
| AAGCAATTGTCCAAAGCTAT+CGG | - | chr1_3:28362265-28362284 | None:intergenic | 35.0% | |
| GTTCGATAAAACTTAATGGC+AGG | - | chr1_3:28362340-28362359 | None:intergenic | 35.0% | |
| CTTCGGTAGATGATAGAATT+TGG | - | chr1_3:28358139-28358158 | None:intergenic | 35.0% | |
| ACTCAACCTAGTAACAACTT+CGG | - | chr1_3:28358156-28358175 | None:intergenic | 35.0% | |
| TTAATCGAACAGTTGTAGCT+GGG | - | chr1_3:28358273-28358292 | None:intergenic | 35.0% | |
| !! | ACGATTGAGCCATATTTTGA+GGG | - | chr1_3:28358331-28358350 | None:intergenic | 35.0% |
| ! | AACGATTGAGCCATATTTTG+AGG | - | chr1_3:28358332-28358351 | None:intergenic | 35.0% |
| !! | TTTTGGAGAAGTTAGAATGG+TGG | - | chr1_3:28358466-28358485 | None:intergenic | 35.0% |
| ! | GTAGTGCCATATTCATGTTT+TGG | - | chr1_3:28358483-28358502 | None:intergenic | 35.0% |
| GACTATGAACTTAAGACCAA+GGG | + | chr1_3:28358626-28358645 | Msa0112840:intron | 35.0% | |
| TTAATACTGAAGGGACAGAA+AGG | + | chr1_3:28363310-28363329 | Msa0112840:intron | 35.0% | |
| ! | ACTTGTTAAAAACAAGTCGG+AGG | + | chr1_3:28358709-28358728 | Msa0112840:intron | 35.0% |
| CTTGTTAAAAACAAGTCGGA+GGG | + | chr1_3:28358710-28358729 | Msa0112840:intron | 35.0% | |
| !!! | AAGCATCGACTGTGAATTTT+CGG | + | chr1_3:28358755-28358774 | Msa0112840:intron | 35.0% |
| GTAACAAAAAACGAGTGACT+TGG | + | chr1_3:28358823-28358842 | Msa0112840:intron | 35.0% | |
| AACAAAAAACGAGTGACTTG+GGG | + | chr1_3:28358825-28358844 | Msa0112840:intron | 35.0% | |
| AAACAAAACGCGTTTGCTTA+AGG | - | chr1_3:28358867-28358886 | None:intergenic | 35.0% | |
| TAAAAATGTCCCACATTGGA+GGG | - | chr1_3:28359092-28359111 | None:intergenic | 35.0% | |
| TTAAAAATGTCCCACATTGG+AGG | - | chr1_3:28359093-28359112 | None:intergenic | 35.0% | |
| GACTTAAAAATGTCCCACAT+TGG | - | chr1_3:28359096-28359115 | None:intergenic | 35.0% | |
| CTATGAAAGAACTAGTGTGT+GGG | - | chr1_3:28359122-28359141 | None:intergenic | 35.0% | |
| ACTATGAAAGAACTAGTGTG+TGG | - | chr1_3:28359123-28359142 | None:intergenic | 35.0% | |
| CTAATTCTATGACTACTGGT+TGG | + | chr1_3:28364032-28364051 | Msa0112840:CDS | 35.0% | |
| CCTTCTTTATAACCTTGTCA+TGG | - | chr1_3:28364289-28364308 | None:intergenic | 35.0% | |
| CCATGACAAGGTTATAAAGA+AGG | + | chr1_3:28364286-28364305 | Msa0112840:intron | 35.0% | |
| TATAAAGAAGGGATCTCTTC+TGG | + | chr1_3:28364298-28364317 | Msa0112840:CDS | 35.0% | |
| ! | GTGATCGTGATATTCTAAAG+AGG | + | chr1_3:28364320-28364339 | Msa0112840:CDS | 35.0% |
| !! | AAGAGCATGCATTTTTGGAA+GGG | - | chr1_3:28364371-28364390 | None:intergenic | 35.0% |
| ! | GTGATCGTGATATTCTAAAG+TGG | + | chr1_3:28364320-28364339 | Msa0112840:CDS | 35.0% |
| CCTTCTTTATAACCTTGTCA+TGG | - | chr1_3:28364289-28364308 | None:intergenic | 35.0% | |
| CCATGACAAGGTTATAAAGA+AGG | + | chr1_3:28364286-28364305 | Msa0112840:intron | 35.0% | |
| CCTTCTTTATAACCTTGTCA+TGG | - | chr1_3:28364289-28364308 | None:intergenic | 35.0% | |
| CCATGACAAGGTTATAAAGA+AGG | + | chr1_3:28364286-28364305 | Msa0112840:intron | 35.0% | |
| AAGACATTGGAGAAACTTGT+AGG | + | chr1_3:28364883-28364902 | Msa0112840:CDS | 35.0% | |
| AAGAAGTTAGAAGAATACCC+TGG | - | chr1_3:28365123-28365142 | None:intergenic | 35.0% | |
| CCTTCTTTATAACCTTGTCA+TGG | - | chr1_3:28364289-28364308 | None:intergenic | 35.0% | |
| CCATGACAAGGTTATAAAGA+AGG | + | chr1_3:28364286-28364305 | Msa0112840:intron | 35.0% | |
| AAGACATTGGAGAAACATCT+AGG | + | chr1_3:28365381-28365400 | Msa0112840:CDS | 35.0% | |
| ! | CGTATATCCCCGATTTTCAT+AGG | + | chr1_3:28357239-28357258 | Msa0112840:CDS | 40.0% |
| TTCCCAATTTCTTGTTGCAG+AGG | + | chr1_3:28357373-28357392 | Msa0112840:intron | 40.0% | |
| GAGGATTCCCAAGAAATATG+TGG | + | chr1_3:28357392-28357411 | Msa0112840:intron | 40.0% | |
| CATCTACCGAAGTTGTTACT+AGG | + | chr1_3:28358147-28358166 | Msa0112840:intron | 40.0% | |
| AGTCTACCTTGCACAACTTT+GGG | - | chr1_3:28358219-28358238 | None:intergenic | 40.0% | |
| TAGTCTACCTTGCACAACTT+TGG | - | chr1_3:28358220-28358239 | None:intergenic | 40.0% | |
| GTTAATCGAACAGTTGTAGC+TGG | - | chr1_3:28358274-28358293 | None:intergenic | 40.0% | |
| TTGAACGGTTTCGAATAGAG+CGG | - | chr1_3:28358384-28358403 | None:intergenic | 40.0% | |
| GTCTCAGCACCATAATAGAA+TGG | - | chr1_3:28358425-28358444 | None:intergenic | 40.0% | |
| GTGGTAACACCATATTTGAG+TGG | - | chr1_3:28358447-28358466 | None:intergenic | 40.0% | |
| GTGGTATCACCATATTTGAG+TGG | - | chr1_3:28358508-28358527 | None:intergenic | 40.0% | |
| GGACTATGAACTTAAGACCA+AGG | + | chr1_3:28358625-28358644 | Msa0112840:intron | 40.0% | |
| AACTTAAGACCAAGGGACTA+TGG | + | chr1_3:28358633-28358652 | Msa0112840:intron | 40.0% | |
| TTCTTAAGACCATAGTCCCT+TGG | - | chr1_3:28358645-28358664 | None:intergenic | 40.0% | |
| TTAATACCGAAGGGACAGAA+AGG | + | chr1_3:28358670-28358689 | Msa0112840:intron | 40.0% | |
| GAGAAGAGAGGAAAAAACAC+AGG | + | chr1_3:28358732-28358751 | Msa0112840:intron | 40.0% | |
| !! | TTTTCGGTGTGAAGAATGAG+TGG | + | chr1_3:28358771-28358790 | Msa0112840:intron | 40.0% |
| ! | TTTCGGTGTGAAGAATGAGT+GGG | + | chr1_3:28358772-28358791 | Msa0112840:intron | 40.0% |
| TGGATATATCCGGAAGTTTC+TGG | + | chr1_3:28358893-28358912 | Msa0112840:intron | 40.0% | |
| !! | AAGTTTCTGGATACGCGTTT+TGG | + | chr1_3:28358906-28358925 | Msa0112840:intron | 40.0% |
| !!! | ACCATTTTGAAGTCAAGTGG+GGG | - | chr1_3:28359194-28359213 | None:intergenic | 40.0% |
| CAACTTGAACCTTTGCATAG+TGG | + | chr1_3:28359262-28359281 | Msa0112840:intron | 40.0% | |
| ! | TTGAACCTTTGCATAGTGGA+AGG | + | chr1_3:28359266-28359285 | Msa0112840:intron | 40.0% |
| GAATACCTTCCACTATGCAA+AGG | - | chr1_3:28359274-28359293 | None:intergenic | 40.0% | |
| CCTATGAAAAGGTTTGTGTG+TGG | - | chr1_3:28359348-28359367 | None:intergenic | 40.0% | |
| ! | CCACACACAAACCTTTTCAT+AGG | + | chr1_3:28359345-28359364 | Msa0112840:intron | 40.0% |
| ! | CTAGAGCATTCGTTAAAACC+GGG | - | chr1_3:28359414-28359433 | None:intergenic | 40.0% |
| ! | CCTAGAGCATTCGTTAAAAC+CGG | - | chr1_3:28359415-28359434 | None:intergenic | 40.0% |
| CCTATACGAATGTGGAACTT+AGG | - | chr1_3:28359467-28359486 | None:intergenic | 40.0% | |
| CCTAAGTTCCACATTCGTAT+AGG | + | chr1_3:28359464-28359483 | Msa0112840:intron | 40.0% | |
| TAGACTCACCTATACGAATG+TGG | - | chr1_3:28359475-28359494 | None:intergenic | 40.0% | |
| TCGTATAGGTGAGTCTATCA+AGG | + | chr1_3:28359478-28359497 | Msa0112840:intron | 40.0% | |
| CGTATAGGTGAGTCTATCAA+GGG | + | chr1_3:28359479-28359498 | Msa0112840:intron | 40.0% | |
| CAAGAAACATCCAGTAGGAT+GGG | - | chr1_3:28359725-28359744 | None:intergenic | 40.0% | |
| AAGTCCAAGAAACATCCAGT+AGG | - | chr1_3:28359730-28359749 | None:intergenic | 40.0% | |
| TTAGCTGATCCTTTGACGAA+AGG | - | chr1_3:28359767-28359786 | None:intergenic | 40.0% | |
| GAGTGTATCTCTAAATGGAG+CGG | - | chr1_3:28359822-28359841 | None:intergenic | 40.0% | |
| CTTAATCTTTGCAATAGCCG+CGG | + | chr1_3:28359899-28359918 | Msa0112840:intron | 40.0% | |
| GTAACGGTTTCTCCCATAAA+GGG | + | chr1_3:28359949-28359968 | Msa0112840:intron | 40.0% | |
| GCTAGCTGAAATCCCTTTAT+GGG | - | chr1_3:28359964-28359983 | None:intergenic | 40.0% | |
| TGCTAGCTGAAATCCCTTTA+TGG | - | chr1_3:28359965-28359984 | None:intergenic | 40.0% | |
| TAAAGGGATTTCAGCTAGCA+AGG | + | chr1_3:28359965-28359984 | Msa0112840:intron | 40.0% | |
| !! | GATATTGACTCAGTCCACTA+TGG | - | chr1_3:28360049-28360068 | None:intergenic | 40.0% |
| CAAGTTTACTAGTAGACGGA+TGG | - | chr1_3:28360263-28360282 | None:intergenic | 40.0% | |
| TTTCACGACATCGACAATGT+CGG | + | chr1_3:28360291-28360310 | Msa0112840:intron | 40.0% | |
| GTCGGATCTAATACATTCAG+TGG | + | chr1_3:28360309-28360328 | Msa0112840:intron | 40.0% | |
| GAGTTATAAATGGCGGCTAA+AGG | + | chr1_3:28360882-28360901 | Msa0112840:intron | 40.0% | |
| AAGGCTTTCCTTGTAGTCAA+AGG | - | chr1_3:28360988-28361007 | None:intergenic | 40.0% | |
| CTGATGGTACGATGAATACA+AGG | - | chr1_3:28361007-28361026 | None:intergenic | 40.0% | |
| CTTGTATTCATCGTACCATC+AGG | + | chr1_3:28361005-28361024 | Msa0112840:intron | 40.0% | |
| AAAGGGGAACTAAAACCTGA+TGG | - | chr1_3:28361023-28361042 | None:intergenic | 40.0% | |
| CCTCATTGGATGCTGAATTA+TGG | - | chr1_3:28361161-28361180 | None:intergenic | 40.0% | |
| CCATAATTCAGCATCCAATG+AGG | + | chr1_3:28361158-28361177 | Msa0112840:intron | 40.0% | |
| ! | TTAGCTTTCTTACCTCCTTG+AGG | + | chr1_3:28361250-28361269 | Msa0112840:intron | 40.0% |
| GATGTTATAGAACCTCAAGG+AGG | - | chr1_3:28361265-28361284 | None:intergenic | 40.0% | |
| CGAGATGTTATAGAACCTCA+AGG | - | chr1_3:28361268-28361287 | None:intergenic | 40.0% | |
| GGGATTGTCTGACATAAGTT+CGG | - | chr1_3:28361572-28361591 | None:intergenic | 40.0% | |
| GAGAAAAGACTGCACTTTGA+TGG | - | chr1_3:28361998-28362017 | None:intergenic | 40.0% | |
| ! | TGAATTTATGGCGGAACAGT+TGG | - | chr1_3:28362203-28362222 | None:intergenic | 40.0% |
| TAGAACAAGACCGATAGCTT+TGG | + | chr1_3:28362252-28362271 | Msa0112840:intron | 40.0% | |
| CGATAAAACTTAATGGCAGG+TGG | - | chr1_3:28362337-28362356 | None:intergenic | 40.0% | |
| CATCTACCGAAGTTGTTACT+AGG | + | chr1_3:28358147-28358166 | Msa0112840:intron | 40.0% | |
| AGTCTACCTTGCACAACTTT+GGG | - | chr1_3:28358219-28358238 | None:intergenic | 40.0% | |
| TAGTCTACCTTGCACAACTT+TGG | - | chr1_3:28358220-28358239 | None:intergenic | 40.0% | |
| GTTAATCGAACAGTTGTAGC+TGG | - | chr1_3:28358274-28358293 | None:intergenic | 40.0% | |
| TTGAACGGTTTCGAATAGAG+CGG | - | chr1_3:28358384-28358403 | None:intergenic | 40.0% | |
| GTCTCAGCACCATAATAGAA+TGG | - | chr1_3:28358425-28358444 | None:intergenic | 40.0% | |
| GTGGTAACACCATATTTGAG+TGG | - | chr1_3:28358447-28358466 | None:intergenic | 40.0% | |
| GTGGTATCACCATATTTGAG+TGG | - | chr1_3:28358508-28358527 | None:intergenic | 40.0% | |
| GGACTATGAACTTAAGACCA+AGG | + | chr1_3:28358625-28358644 | Msa0112840:intron | 40.0% | |
| AACTTAAGACCAAGGGACTA+TGG | + | chr1_3:28358633-28358652 | Msa0112840:intron | 40.0% | |
| TTCTTAAGACCATAGTCCCT+TGG | - | chr1_3:28358645-28358664 | None:intergenic | 40.0% | |
| GAGAAGAGAGGAAAAAACAC+AGG | + | chr1_3:28358732-28358751 | Msa0112840:intron | 40.0% | |
| !! | TTTTCGGTGTGAAGAATGAG+TGG | + | chr1_3:28358771-28358790 | Msa0112840:intron | 40.0% |
| ! | TTTCGGTGTGAAGAATGAGT+GGG | + | chr1_3:28358772-28358791 | Msa0112840:intron | 40.0% |
| TGGATATATCCGGAAGTTTC+TGG | + | chr1_3:28358893-28358912 | Msa0112840:intron | 40.0% | |
| !! | AAGTTTCTGGATACGCGTTT+TGG | + | chr1_3:28358906-28358925 | Msa0112840:intron | 40.0% |
| ! | ATTCTAAAGAGGAGAGACAC+TGG | + | chr1_3:28364331-28364350 | Msa0112840:CDS | 40.0% |
| !! | GAAGAGCATGCATTTTTGGA+AGG | - | chr1_3:28364372-28364391 | None:intergenic | 40.0% |
| TCCAAAAATGCATGCTCTTC+AGG | + | chr1_3:28364372-28364391 | Msa0112840:CDS | 40.0% | |
| CCAAAAATGCATGCTCTTCA+GGG | + | chr1_3:28364373-28364392 | Msa0112840:CDS | 40.0% | |
| AAGACACTCGAGAAACATGT+AGG | + | chr1_3:28364535-28364554 | Msa0112840:intron | 40.0% | |
| !! | AAGAGCATGCACTTTTGGAA+GGG | - | chr1_3:28364562-28364581 | None:intergenic | 40.0% |
| !! | GTGATCGTGATGTTCTAAAG+AGG | + | chr1_3:28364669-28364688 | Msa0112840:CDS | 40.0% |
| !! | AAGAGCTTGCACTTTTGGAA+GGG | - | chr1_3:28364720-28364739 | None:intergenic | 40.0% |
| !! | AAGAGCATGCACTTTTGGAA+GGG | - | chr1_3:28364562-28364581 | None:intergenic | 40.0% |
| ! | TTCCAAAAGTGCATGCTCTT+CGG | + | chr1_3:28364562-28364581 | Msa0112840:intron | 40.0% |
| ! | ATTCTAAAGAGGAGAGACAC+TGG | + | chr1_3:28364331-28364350 | Msa0112840:CDS | 40.0% |
| GAGACACTGGAGAAATTTGT+CGG | + | chr1_3:28365074-28365093 | Msa0112840:CDS | 40.0% | |
| GTGATAAGCATATTCTACCG+TGG | + | chr1_3:28365357-28365376 | Msa0112840:CDS | 40.0% | |
| ATTCTACCGTGGAAAGACAT+TGG | + | chr1_3:28365368-28365387 | Msa0112840:CDS | 40.0% | |
| GTTTCTCCAATGTCTTTCCA+CGG | - | chr1_3:28365377-28365396 | None:intergenic | 40.0% | |
| ATGACACAAACTTACGCCCA+TGG | + | chr1_3:28358055-28358074 | Msa0112840:intron | 45.0% | |
| TTACGCCCATGGTCATATCT+TGG | + | chr1_3:28358066-28358085 | Msa0112840:intron | 45.0% | |
| !! | GCTCTCTTTAAGACGTTTCG+TGG | + | chr1_3:28358188-28358207 | Msa0112840:intron | 45.0% |
| !!! | TAGCTGGGCTTGTTTTATCC+TGG | - | chr1_3:28358258-28358277 | None:intergenic | 45.0% |
| TTGATCGAAGCCACTCGATA+CGG | + | chr1_3:28358351-28358370 | Msa0112840:intron | 45.0% | |
| GTGCTGAGACCACTCAAATA+TGG | + | chr1_3:28358435-28358454 | Msa0112840:intron | 45.0% | |
| GCACTACGACCACTCAAATA+TGG | + | chr1_3:28358496-28358515 | Msa0112840:intron | 45.0% | |
| TCTACTCCTTTCTGTCCCTT+CGG | - | chr1_3:28358679-28358698 | None:intergenic | 45.0% | |
| ! | TTCGGTGTGAAGAATGAGTG+GGG | + | chr1_3:28358773-28358792 | Msa0112840:intron | 45.0% |
| AACGCGTATCCAGAAACTTC+CGG | - | chr1_3:28358905-28358924 | None:intergenic | 45.0% | |
| !! | TCTGGATACGCGTTTTGGAT+CGG | + | chr1_3:28358911-28358930 | Msa0112840:intron | 45.0% |
| TTTGTTACGCGTAGCGCTTA+CGG | + | chr1_3:28358954-28358973 | Msa0112840:intron | 45.0% | |
| TCCCCCACTTGACTTCAAAA+TGG | + | chr1_3:28359190-28359209 | Msa0112840:intron | 45.0% | |
| ! | CTAAAAGCCCGTGCGTTTTA+AGG | + | chr1_3:28359374-28359393 | Msa0112840:intron | 45.0% |
| !! | CCGGTTTTAACGAATGCTCT+AGG | + | chr1_3:28359412-28359431 | Msa0112840:intron | 45.0% |
| GCCTTGAAATTCCATAGGAC+CGG | + | chr1_3:28359441-28359460 | Msa0112840:intron | 45.0% | |
| TACGAATGTGGAACTTAGGC+CGG | - | chr1_3:28359463-28359482 | None:intergenic | 45.0% | |
| GACTGGAGATCCCAAGAAAT+AGG | - | chr1_3:28359659-28359678 | None:intergenic | 45.0% | |
| ! | TACCATCACTTGTGGGCTAT+AGG | + | chr1_3:28359692-28359711 | Msa0112840:intron | 45.0% |
| CCAAGAAACATCCAGTAGGA+TGG | - | chr1_3:28359726-28359745 | None:intergenic | 45.0% | |
| CCATCCTACTGGATGTTTCT+TGG | + | chr1_3:28359723-28359742 | Msa0112840:intron | 45.0% | |
| ! | GGTAACGGTTTCTCCCATAA+AGG | + | chr1_3:28359948-28359967 | Msa0112840:intron | 45.0% |
| TGCACATTGAGCATCACTAG+AGG | - | chr1_3:28360092-28360111 | None:intergenic | 45.0% | |
| !! | GCTCTCTTTAAGACGTTTCG+TGG | + | chr1_3:28358188-28358207 | Msa0112840:intron | 45.0% |
| !!! | TAGCTGGGCTTGTTTTATCC+TGG | - | chr1_3:28358258-28358277 | None:intergenic | 45.0% |
| TTGATCGAAGCCACTCGATA+CGG | + | chr1_3:28358351-28358370 | Msa0112840:intron | 45.0% | |
| GTGCTGAGACCACTCAAATA+TGG | + | chr1_3:28358435-28358454 | Msa0112840:intron | 45.0% | |
| GCACTACGACCACTCAAATA+TGG | + | chr1_3:28358496-28358515 | Msa0112840:intron | 45.0% | |
| ! | TTCGGTGTGAAGAATGAGTG+GGG | + | chr1_3:28358773-28358792 | Msa0112840:intron | 45.0% |
| AACGCGTATCCAGAAACTTC+CGG | - | chr1_3:28358905-28358924 | None:intergenic | 45.0% | |
| !! | TCTGGATACGCGTTTTGGAT+CGG | + | chr1_3:28358911-28358930 | Msa0112840:intron | 45.0% |
| TTTGTTACGCGTAGCGCTTA+CGG | + | chr1_3:28358954-28358973 | Msa0112840:intron | 45.0% | |
| GGGATTGCAAGCTTAAGAGT+TGG | + | chr1_3:28363959-28363978 | Msa0112840:intron | 45.0% | |
| TGCAAGCTTAAGAGTTGGAG+AGG | + | chr1_3:28363964-28363983 | Msa0112840:intron | 45.0% | |
| AGAGGAGACAGCTATGAAAG+TGG | + | chr1_3:28363982-28364001 | Msa0112840:CDS | 45.0% | |
| CCTTGCAACTTCTTAGGGTT+TGG | - | chr1_3:28364169-28364188 | None:intergenic | 45.0% | |
| CCAAACCCTAAGAAGTTGCA+AGG | + | chr1_3:28364166-28364185 | Msa0112840:CDS | 45.0% | |
| !! | CCCTGAAGAGCATGCATTTT+TGG | - | chr1_3:28364376-28364395 | None:intergenic | 45.0% |
| !! | GAAGAGCATGCACTTTTGGA+AGG | - | chr1_3:28364563-28364582 | None:intergenic | 45.0% |
| ! | TCCAAAAGTGCATGCTCTTC+AGG | + | chr1_3:28364563-28364582 | Msa0112840:intron | 45.0% |
| ! | CCAAAAGTGCATGCTCTTCA+GGG | + | chr1_3:28364564-28364583 | Msa0112840:intron | 45.0% |
| !! | GTTCTAAAGAGGAAAGACGC+TGG | + | chr1_3:28364680-28364699 | Msa0112840:CDS | 45.0% |
| AAGACGCTGGAGAAACTTGT+AGG | + | chr1_3:28364693-28364712 | Msa0112840:CDS | 45.0% | |
| ! | GAAGAGCTTGCACTTTTGGA+AGG | - | chr1_3:28364721-28364740 | None:intergenic | 45.0% |
| ! | CCTTGAAGAGCTTGCACTTT+TGG | - | chr1_3:28364725-28364744 | None:intergenic | 45.0% |
| ! | CCAAAAGTGCAAGCTCTTCA+AGG | + | chr1_3:28364722-28364741 | Msa0112840:CDS | 45.0% |
| !! | GAAGAGCATGCACTTTTGGA+AGG | - | chr1_3:28364563-28364582 | None:intergenic | 45.0% |
| ! | TCCAAAAGTGCATGCTCTTC+GGG | + | chr1_3:28364563-28364582 | Msa0112840:intron | 45.0% |
| !!! | CTTTTAATTTTTAAATATAT+TGG | + | chr1_3:28357561-28357580 | Msa0112840:intron | 5.0% |
| !!! | ATTTATTTGTAATTTTTTTA+TGG | + | chr1_3:28365245-28365264 | Msa0112840:intron | 5.0% |
| ! | TACTAGGTTGAGTCACGACC+AGG | + | chr1_3:28358163-28358182 | Msa0112840:intron | 50.0% |
| ACGTCTTAAAGAGAGCGACC+TGG | - | chr1_3:28358184-28358203 | None:intergenic | 50.0% | |
| GCACTACCCAAAGTTGTGCA+AGG | + | chr1_3:28358210-28358229 | Msa0112840:intron | 50.0% | |
| !!! | GGCTTGTTTTATCCTGGAGG+CGG | - | chr1_3:28358252-28358271 | None:intergenic | 50.0% |
| !!! | CTGGGCTTGTTTTATCCTGG+AGG | - | chr1_3:28358255-28358274 | None:intergenic | 50.0% |
| ! | GGGCGAGCTCTCCTTTTATA+GGG | + | chr1_3:28358793-28358812 | Msa0112840:intron | 50.0% |
| !! | CTGGATACGCGTTTTGGATC+GGG | + | chr1_3:28358912-28358931 | Msa0112840:intron | 50.0% |
| !! | ATACGCGTTTTGGATCGGGT+CGG | + | chr1_3:28358916-28358935 | Msa0112840:intron | 50.0% |
| GAAGTCAAGTGGGGGATTGT+TGG | - | chr1_3:28359186-28359205 | None:intergenic | 50.0% | |
| AAAACCGGGATACACGTGCA+GGG | - | chr1_3:28359400-28359419 | None:intergenic | 50.0% | |
| TAAAACCGGGATACACGTGC+AGG | - | chr1_3:28359401-28359420 | None:intergenic | 50.0% | |
| GCCGGTCCTATGGAATTTCA+AGG | - | chr1_3:28359445-28359464 | None:intergenic | 50.0% | |
| CATGATCCTGCAGCGAAAGA+AGG | - | chr1_3:28359573-28359592 | None:intergenic | 50.0% | |
| CTTGGGATCTCCAGTCATCT+AGG | + | chr1_3:28359663-28359682 | Msa0112840:intron | 50.0% | |
| GGATCTCCAGTCATCTAGGT+CGG | + | chr1_3:28359667-28359686 | Msa0112840:intron | 50.0% | |
| GATCTCCAGTCATCTAGGTC+GGG | + | chr1_3:28359668-28359687 | Msa0112840:intron | 50.0% | |
| GTCGGGTTACCATCACTTGT+GGG | + | chr1_3:28359685-28359704 | Msa0112840:intron | 50.0% | |
| TGCCTATAGCCCACAAGTGA+TGG | - | chr1_3:28359697-28359716 | None:intergenic | 50.0% | |
| AGGCATTAGTCCCATCCTAC+TGG | + | chr1_3:28359712-28359731 | Msa0112840:intron | 50.0% | |
| GAGCATCATTGGCAGCACTT+AGG | - | chr1_3:28360339-28360358 | None:intergenic | 50.0% | |
| !! | AGAATAGTGGGGGCACTAGT+GGG | - | chr1_3:28361385-28361404 | None:intergenic | 50.0% |
| !! | AAGAATAGTGGGGGCACTAG+TGG | - | chr1_3:28361386-28361405 | None:intergenic | 50.0% |
| ! | TACTAGGTTGAGTCACGACC+AGG | + | chr1_3:28358163-28358182 | Msa0112840:intron | 50.0% |
| ACGTCTTAAAGAGAGCGACC+TGG | - | chr1_3:28358184-28358203 | None:intergenic | 50.0% | |
| GCACTACCCAAAGTTGTGCA+AGG | + | chr1_3:28358210-28358229 | Msa0112840:intron | 50.0% | |
| !!! | GGCTTGTTTTATCCTGGAGG+CGG | - | chr1_3:28358252-28358271 | None:intergenic | 50.0% |
| !!! | CTGGGCTTGTTTTATCCTGG+AGG | - | chr1_3:28358255-28358274 | None:intergenic | 50.0% |
| ! | GGGCGAGCTCTCCTTTTATA+GGG | + | chr1_3:28358793-28358812 | Msa0112840:intron | 50.0% |
| !! | CTGGATACGCGTTTTGGATC+GGG | + | chr1_3:28358912-28358931 | Msa0112840:intron | 50.0% |
| !! | ATACGCGTTTTGGATCGGGT+CGG | + | chr1_3:28358916-28358935 | Msa0112840:intron | 50.0% |
| ! | CTTAGGGTTTGGTCCCTTGA+TGG | - | chr1_3:28364158-28364177 | None:intergenic | 50.0% |
| !! | CCCTGAAGAGCATGCACTTT+TGG | - | chr1_3:28364567-28364586 | None:intergenic | 50.0% |
| ! | CCAAAAGTGCATGCTCTTCG+GGG | + | chr1_3:28364912-28364931 | Msa0112840:CDS | 50.0% |
| !! | GGAGAGCATGCACTTTTGGA+CGG | - | chr1_3:28365102-28365121 | None:intergenic | 50.0% |
| ! | TCCAAAAGTGCATGCTCTCC+AGG | + | chr1_3:28365102-28365121 | Msa0112840:CDS | 50.0% |
| ! | CCAAAAGTGCATGCTCTCCA+GGG | + | chr1_3:28365103-28365122 | Msa0112840:CDS | 50.0% |
| CGGTTACGTACCGTATCGAG+TGG | - | chr1_3:28358364-28358383 | None:intergenic | 55.0% | |
| ACAAGTCGGAGGGAGAAGAG+AGG | + | chr1_3:28358720-28358739 | Msa0112840:intron | 55.0% | |
| ! | GGGGCGAGCTCTCCTTTTAT+AGG | + | chr1_3:28358792-28358811 | Msa0112840:intron | 55.0% |
| TTGGGGTGACCCTCCAATGT+GGG | + | chr1_3:28359080-28359099 | Msa0112840:intron | 55.0% | |
| TGCAGGGCCTTAAAACGCAC+GGG | - | chr1_3:28359384-28359403 | None:intergenic | 55.0% | |
| GTGCAGGGCCTTAAAACGCA+CGG | - | chr1_3:28359385-28359404 | None:intergenic | 55.0% | |
| TGGAACTTAGGCCGGTCCTA+TGG | - | chr1_3:28359455-28359474 | None:intergenic | 55.0% | |
| TGAGTGGGGTACACAGCTAC+AGG | - | chr1_3:28359509-28359528 | None:intergenic | 55.0% | |
| CCTGCAGCGAAAGAAGGATG+AGG | - | chr1_3:28359567-28359586 | None:intergenic | 55.0% | |
| CCTCATCCTTCTTTCGCTGC+AGG | + | chr1_3:28359564-28359583 | Msa0112840:intron | 55.0% | |
| GGTAACCCGACCTAGATGAC+TGG | - | chr1_3:28359676-28359695 | None:intergenic | 55.0% | |
| GGTCGGGTTACCATCACTTG+TGG | + | chr1_3:28359684-28359703 | Msa0112840:intron | 55.0% | |
| !! | AATAGTGGGGGCACTAGTGG+GGG | - | chr1_3:28361383-28361402 | None:intergenic | 55.0% |
| !! | GAATAGTGGGGGCACTAGTG+GGG | - | chr1_3:28361384-28361403 | None:intergenic | 55.0% |
| CGGTTACGTACCGTATCGAG+TGG | - | chr1_3:28358364-28358383 | None:intergenic | 55.0% | |
| ACAAGTCGGAGGGAGAAGAG+AGG | + | chr1_3:28358720-28358739 | Msa0112840:intron | 55.0% | |
| ! | GGGGCGAGCTCTCCTTTTAT+AGG | + | chr1_3:28358792-28358811 | Msa0112840:intron | 55.0% |
| TTGGGGTGACCCTCCAATGT+GGG | + | chr1_3:28359080-28359099 | Msa0112840:intron | 55.0% | |
| !! | CCCCGAAGAGCATGCACTTT+TGG | - | chr1_3:28364915-28364934 | None:intergenic | 55.0% |
| !! | CCCTGGAGAGCATGCACTTT+TGG | - | chr1_3:28365106-28365125 | None:intergenic | 55.0% |
| ! | GTTTTATCCTGGAGGCGGCG+TGG | - | chr1_3:28358247-28358266 | None:intergenic | 60.0% |
| GTTGGGGTGACCCTCCAATG+TGG | + | chr1_3:28359079-28359098 | Msa0112840:intron | 60.0% | |
| AAGGCCCTGCACGTGTATCC+CGG | + | chr1_3:28359393-28359412 | Msa0112840:intron | 60.0% | |
| ! | GTTTTATCCTGGAGGCGGCG+TGG | - | chr1_3:28358247-28358266 | None:intergenic | 60.0% |
| GTTGGGGTGACCCTCCAATG+TGG | + | chr1_3:28359079-28359098 | Msa0112840:intron | 60.0% | |
| CTATCAACCACGCCGCCTCC+AGG | + | chr1_3:28358237-28358256 | Msa0112840:intron | 65.0% | |
| CTATCAACCACGCCGCCTCC+AGG | + | chr1_3:28358237-28358256 | Msa0112840:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 28357229 | 28365430 | 28357229 | ID=Msa0112840;Name=Msa0112840 |
| chr1_3 | mRNA | 28357229 | 28365430 | 28357229 | ID=Msa0112840-mRNA-1;Parent=Msa0112840;Name=Msa0112840-mRNA-1;_AED=0.21;_eAED=0.26;_QI=0|0|0|1|0.55|0.4|10|0|381 |
| chr1_3 | exon | 28357229 | 28357285 | 28357229 | ID=Msa0112840-mRNA-1:exon:9328;Parent=Msa0112840-mRNA-1 |
| chr1_3 | exon | 28357393 | 28357488 | 28357393 | ID=Msa0112840-mRNA-1:exon:9329;Parent=Msa0112840-mRNA-1 |
| chr1_3 | exon | 28357600 | 28357801 | 28357600 | ID=Msa0112840-mRNA-1:exon:9330;Parent=Msa0112840-mRNA-1 |
| chr1_3 | exon | 28357928 | 28358009 | 28357928 | ID=Msa0112840-mRNA-1:exon:9331;Parent=Msa0112840-mRNA-1 |
| chr1_3 | exon | 28363976 | 28364187 | 28363976 | ID=Msa0112840-mRNA-1:exon:9332;Parent=Msa0112840-mRNA-1 |
| chr1_3 | exon | 28364296 | 28364394 | 28364296 | ID=Msa0112840-mRNA-1:exon:9333;Parent=Msa0112840-mRNA-1 |
| chr1_3 | exon | 28364645 | 28364743 | 28364645 | ID=Msa0112840-mRNA-1:exon:9334;Parent=Msa0112840-mRNA-1 |
| chr1_3 | exon | 28364835 | 28364933 | 28364835 | ID=Msa0112840-mRNA-1:exon:9335;Parent=Msa0112840-mRNA-1 |
| chr1_3 | exon | 28365026 | 28365124 | 28365026 | ID=Msa0112840-mRNA-1:exon:9336;Parent=Msa0112840-mRNA-1 |
| chr1_3 | exon | 28365333 | 28365430 | 28365333 | ID=Msa0112840-mRNA-1:exon:9337;Parent=Msa0112840-mRNA-1 |
| chr1_3 | CDS | 28357229 | 28357285 | 28357229 | ID=Msa0112840-mRNA-1:cds;Parent=Msa0112840-mRNA-1 |
| chr1_3 | CDS | 28357393 | 28357488 | 28357393 | ID=Msa0112840-mRNA-1:cds;Parent=Msa0112840-mRNA-1 |
| chr1_3 | CDS | 28357600 | 28357801 | 28357600 | ID=Msa0112840-mRNA-1:cds;Parent=Msa0112840-mRNA-1 |
| chr1_3 | CDS | 28357928 | 28358009 | 28357928 | ID=Msa0112840-mRNA-1:cds;Parent=Msa0112840-mRNA-1 |
| chr1_3 | CDS | 28363976 | 28364187 | 28363976 | ID=Msa0112840-mRNA-1:cds;Parent=Msa0112840-mRNA-1 |
| chr1_3 | CDS | 28364296 | 28364394 | 28364296 | ID=Msa0112840-mRNA-1:cds;Parent=Msa0112840-mRNA-1 |
| chr1_3 | CDS | 28364645 | 28364743 | 28364645 | ID=Msa0112840-mRNA-1:cds;Parent=Msa0112840-mRNA-1 |
| chr1_3 | CDS | 28364835 | 28364933 | 28364835 | ID=Msa0112840-mRNA-1:cds;Parent=Msa0112840-mRNA-1 |
| chr1_3 | CDS | 28365026 | 28365124 | 28365026 | ID=Msa0112840-mRNA-1:cds;Parent=Msa0112840-mRNA-1 |
| chr1_3 | CDS | 28365333 | 28365430 | 28365333 | ID=Msa0112840-mRNA-1:cds;Parent=Msa0112840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
