AlfalfaGEDB | Msa0112840

M. sativa cultivar zhongmu-4 / Msa0112840

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0112840	RHN78230.1	64.377	393	62	5	1	316	1	392	6.88e-158	459
Msa0112840	RHN78230.1	73.832	107	27	1	276	381	285	391	1.75e-38	152

Showing 1 to 2 of 2 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0112840	A0A396JJ07	64.377	393	62	5	1	316	1	392	3.29e-158	459
Msa0112840	A0A396JJ07	73.832	107	27	1	276	381	285	391	8.37e-39	152

Showing 1 to 2 of 2 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0112840	TF	B3

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0112840	MtrunA17_Chr1g0163251	64.377	393	62	5	1	316	1	392	6.33e-162	459
Msa0112840	MtrunA17_Chr1g0163251	73.832	107	27	1	276	381	285	391	1.61e-42	152
Msa0112840	MtrunA17_Chr1g0163181	39.583	336	108	9	1	245	1	332	9.74e-62	204
Msa0112840	MtrunA17_Chr1g0163201	38.129	278	90	6	20	215	18	295	1.80e-44	158
Msa0112840	MtrunA17_Chr1g0163231	34.982	283	104	7	1	206	1	280	2.71e-37	136
Msa0112840	MtrunA17_Chr1g0163261	31.000	300	117	6	1	216	1	294	1.32e-35	132
Msa0112840	MtrunA17_Chr1g0163191	48.101	158	31	2	1	107	1	158	3.35e-34	124
Msa0112840	MtrunA17_Chr1g0171611	36.194	268	109	7	1	206	1	268	5.96e-34	127
Msa0112840	MtrunA17_Chr1g0163241	48.701	154	32	5	6	117	12	160	7.63e-30	112
Msa0112840	MtrunA17_Chr1g0162151	47.222	72	38	0	147	218	61	132	6.83e-17	79.0

Showing 1 to 10 of 16 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 63 sgRNAs with CRISPR-Local

Find 497 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCAACTCTAAAGCAGGT+AGG	0.650077	1_3:+28357936	Msa0112840:CDS
AAGACATTGGAGAAACATCT+AGG	0.517707	1_3:+28365381	Msa0112840:CDS
AAGACATTGGAGAAACTTGT+AGG	0.516345	1_3:+28364883	Msa0112840:CDS
AAGACGCTGGAGAAACTTGT+AGG	0.502167	1_3:+28364693	Msa0112840:CDS
AAGCTCAAATGATAACAAAT+GGG	0.514121	1_3:+28357730	Msa0112840:CDS
AATATTATCCTATGAAAATC+GGG	0.414910	1_3:-28357247	None:intergenic
ACTATTACTAAAGCCATCAA+GGG	0.618938	1_3:+28364142	Msa0112840:CDS
AGAAATATGTGGAGAAATAT+TGG	0.283749	1_3:+28357403	Msa0112840:CDS
AGAGGAGACAGCTATGAAAG+TGG	0.577915	1_3:+28363982	Msa0112840:CDS
ATAGTAATAGTGAATAAAAG+TGG	0.509655	1_3:-28364124	None:intergenic

Showing 1 to 10 of 63 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TATGTGGAGAAATATTGGAA+AGG	+	chr1_3:28357408-28357427	Msa0112840:CDS	30.0%
TGGAGAATAATGGTGATATT+TGG	+	chr1_3:28357490-28357509	Msa0112840:intron	30.0%
TTTGCAAAGTCTCTCAAATA+TGG	+	chr1_3:28357534-28357553	Msa0112840:intron	30.0%
CAAGCTCAAATGATAACAAA+TGG	+	chr1_3:28357729-28357748	Msa0112840:CDS	30.0%
AGAATTACACCCTCAAAATA+TGG	+	chr1_3:28358319-28358338	Msa0112840:intron	30.0%
CGAAACCGTTCAAATTAATA+TGG	+	chr1_3:28358391-28358410	Msa0112840:intron	30.0%
ACTTCTCCAAAACATGAATA+TGG	+	chr1_3:28358474-28358493	Msa0112840:intron	30.0%
TTACAAACTCTCCCTATAAA+AGG	-	chr1_3:28358807-28358826	None:intergenic	30.0%
TAACAAAAAACGAGTGACTT+GGG	+	chr1_3:28358824-28358843	Msa0112840:intron	30.0%
ATCTATACTCTATGTTGAGT+GGG	-	chr1_3:28359524-28359543	None:intergenic	30.0%

Showing 1 to 10 of 497 entries

Previous1 2 3 4 5…50Next

Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	28357229	28365430	28357229	ID=Msa0112840;Name=Msa0112840
chr1_3	mRNA	28357229	28365430	28357229	ID=Msa0112840-mRNA-1;Parent=Msa0112840;Name=Msa0112840-mRNA-1;_AED=0.21;_eAED=0.26;_QI=0\|0\|0\|1\|0.55\|0.4\|10\|0\|381
chr1_3	exon	28357229	28357285	28357229	ID=Msa0112840-mRNA-1:exon:9328;Parent=Msa0112840-mRNA-1
chr1_3	exon	28357393	28357488	28357393	ID=Msa0112840-mRNA-1:exon:9329;Parent=Msa0112840-mRNA-1
chr1_3	exon	28357600	28357801	28357600	ID=Msa0112840-mRNA-1:exon:9330;Parent=Msa0112840-mRNA-1
chr1_3	exon	28357928	28358009	28357928	ID=Msa0112840-mRNA-1:exon:9331;Parent=Msa0112840-mRNA-1
chr1_3	exon	28363976	28364187	28363976	ID=Msa0112840-mRNA-1:exon:9332;Parent=Msa0112840-mRNA-1
chr1_3	exon	28364296	28364394	28364296	ID=Msa0112840-mRNA-1:exon:9333;Parent=Msa0112840-mRNA-1
chr1_3	exon	28364645	28364743	28364645	ID=Msa0112840-mRNA-1:exon:9334;Parent=Msa0112840-mRNA-1
chr1_3	exon	28364835	28364933	28364835	ID=Msa0112840-mRNA-1:exon:9335;Parent=Msa0112840-mRNA-1
chr1_3	exon	28365026	28365124	28365026	ID=Msa0112840-mRNA-1:exon:9336;Parent=Msa0112840-mRNA-1
chr1_3	exon	28365333	28365430	28365333	ID=Msa0112840-mRNA-1:exon:9337;Parent=Msa0112840-mRNA-1
chr1_3	CDS	28357229	28357285	28357229	ID=Msa0112840-mRNA-1:cds;Parent=Msa0112840-mRNA-1
chr1_3	CDS	28357393	28357488	28357393	ID=Msa0112840-mRNA-1:cds;Parent=Msa0112840-mRNA-1
chr1_3	CDS	28357600	28357801	28357600	ID=Msa0112840-mRNA-1:cds;Parent=Msa0112840-mRNA-1
chr1_3	CDS	28357928	28358009	28357928	ID=Msa0112840-mRNA-1:cds;Parent=Msa0112840-mRNA-1
chr1_3	CDS	28363976	28364187	28363976	ID=Msa0112840-mRNA-1:cds;Parent=Msa0112840-mRNA-1
chr1_3	CDS	28364296	28364394	28364296	ID=Msa0112840-mRNA-1:cds;Parent=Msa0112840-mRNA-1
chr1_3	CDS	28364645	28364743	28364645	ID=Msa0112840-mRNA-1:cds;Parent=Msa0112840-mRNA-1
chr1_3	CDS	28364835	28364933	28364835	ID=Msa0112840-mRNA-1:cds;Parent=Msa0112840-mRNA-1
chr1_3	CDS	28365026	28365124	28365026	ID=Msa0112840-mRNA-1:cds;Parent=Msa0112840-mRNA-1
chr1_3	CDS	28365333	28365430	28365333	ID=Msa0112840-mRNA-1:cds;Parent=Msa0112840-mRNA-1

Gene Sequence

>Msa0112840

ATGTCATTACCGTATATCCCCGATTTTCATAGGATAATATTGCAAGATAAGAAGCTTAGGATTCCCAAGAAATATGTGGAGAAATATTGGAAAGGAATATCAAACCCAATATTTCTTAAATTCCCAAATGGTGTTCAACAAAAAATATTTTGGGTTAAGATATTTGGTGTCAATACTTTAGAAATAGATTATTCCAATATAAAATCTGTTGATGAAGTTGTTGAAGCTACAAAAGAAGCTAAAGAAATTGTTGATTTGACTGATGAGAGTGAAATACCAAAGCAAGCTCAAATGATAACAAATGGGAAGAAAAAAATGAGCATAGATATTGACACTCTTAAGCAAAAATTCCCAGTACTTAACAAATCAACTCTAAAGCAGGTAGGAACATTGAAGACACGATTAAGAAAGTTAAAAAAAGCTCAAGAATTGAAGTTAGTTGGAGAGGAGACAGCTATGAAAGTGGATATAGTGTTTAACAATAAAAGATCTTCTAATTCTATGACTACTGGTTGGAAGTCATTTAACCAAAAATATAACTTAGAAGTTGGTGATATATGTAAATTTGTGATGACTCAAAGAGAACCACTTTTATTCACTATTACTATTACTAAAGCCATCAAGGGACCAAACCCTAAGAAGTTGCAAGGTTATAAAGAAGGGATCTCTTCTGGTGATCGTGATATTCTAAAGAGGAGAGACACTGGAGAAACTTGTACGACCCTTCCAAAAATGCATGCTCTTCAGGGTTATAAAGAAGGGATCTCTTATGGTGATCGTGATGTTCTAAAGAGGAAAGACGCTGGAGAAACTTGTAGGACCCTTCCAAAAGTGCAAGCTCTTCAAGGTTATAAAGAAGGGATTTCTTATGATGATCATGATATTCTAAAGAGGAAAGACATTGGAGAAACTTGTAGGACCCTTCCAAAAGTGCATGCTCTTCGGGGTTATAAAGAAGTTATCTCTTCATTTGATAATAATATTCTAAAGAGGAGAGACACTGGAGAAATTTGTCGGAGCCGTCCAAAAGTGCATGCTCTCCAGGGTTATAAAGAAGGCATCTCTTCTTGTGATAAGCATATTCTACCGTGGAAAGACATTGGAGAAACATCTAGGAGCTGTCCAAAAGAGCATGCTTCCCAT

Protein sequence

>Msa0112840

MSLPYIPDFHRIILQDKKLRIPKKYVEKYWKGISNPIFLKFPNGVQQKIFWVKIFGVNTLEIDYSNIKSVDEVVEATKEAKEIVDLTDESEIPKQAQMITNGKKKMSIDIDTLKQKFPVLNKSTLKQVGTLKTRLRKLKKAQELKLVGEETAMKVDIVFNNKRSSNSMTTGWKSFNQKYNLEVGDICKFVMTQREPLLFTITITKAIKGPNPKKLQGYKEGISSGDRDILKRRDTGETCTTLPKMHALQGYKEGISYGDRDVLKRKDAGETCRTLPKVQALQGYKEGISYDDHDILKRKDIGETCRTLPKVHALRGYKEVISSFDNNILKRRDTGEICRSRPKVHALQGYKEGISSCDKHILPWKDIGETSRSCPKEHASH