Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112910 | XP_039686025.1 | 70.139 | 432 | 63 | 5 | 57 | 483 | 48 | 418 | 0.0 | 572 |
| Msa0112910 | XP_039686025.1 | 74.359 | 195 | 36 | 5 | 143 | 331 | 288 | 474 | 5.19e-82 | 275 |
| Msa0112910 | XP_039686025.1 | 96.591 | 88 | 3 | 0 | 408 | 495 | 486 | 573 | 1.06e-48 | 187 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112910 | A0A072VHA4 | 44.061 | 522 | 197 | 12 | 1 | 484 | 1 | 465 | 1.81e-115 | 357 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0112910 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112910 | MtrunA17_Chr1g0163251 | 52.841 | 352 | 115 | 6 | 1 | 324 | 1 | 329 | 4.66e-109 | 329 |
| Msa0112910 | MtrunA17_Chr1g0163251 | 36.257 | 171 | 65 | 4 | 321 | 487 | 157 | 287 | 9.95e-24 | 103 |
| Msa0112910 | MtrunA17_Chr1g0163181 | 47.661 | 342 | 138 | 6 | 1 | 313 | 1 | 330 | 2.29e-95 | 295 |
| Msa0112910 | MtrunA17_Chr1g0163181 | 75.610 | 82 | 20 | 0 | 408 | 489 | 354 | 435 | 1.25e-34 | 135 |
| Msa0112910 | MtrunA17_Chr1g0163181 | 26.904 | 197 | 95 | 4 | 291 | 483 | 141 | 292 | 2.12e-15 | 78.2 |
| Msa0112910 | MtrunA17_Chr1g0163201 | 46.599 | 294 | 112 | 6 | 20 | 284 | 18 | 295 | 2.46e-69 | 227 |
| Msa0112910 | MtrunA17_Chr1g0163201 | 76.471 | 85 | 20 | 0 | 408 | 492 | 317 | 401 | 2.66e-37 | 141 |
| Msa0112910 | MtrunA17_Chr1g0163201 | 31.138 | 167 | 71 | 4 | 326 | 488 | 165 | 291 | 1.45e-16 | 81.6 |
| Msa0112910 | MtrunA17_Chr1g0163261 | 40.964 | 332 | 117 | 6 | 1 | 288 | 1 | 297 | 9.83e-69 | 222 |
| Msa0112910 | MtrunA17_Chr1g0163261 | 31.765 | 170 | 72 | 3 | 318 | 483 | 153 | 282 | 1.35e-15 | 77.4 |
| Msa0112910 | MtrunA17_Chr1g0163231 | 45.048 | 313 | 103 | 10 | 1 | 276 | 1 | 281 | 2.33e-68 | 221 |
| Msa0112910 | MtrunA17_Chr1g0163231 | 51.250 | 80 | 33 | 4 | 325 | 402 | 159 | 234 | 6.36e-13 | 69.3 |
| Msa0112910 | MtrunA17_Chr1g0171611 | 41.214 | 313 | 103 | 9 | 1 | 276 | 1 | 269 | 1.12e-60 | 201 |
| Msa0112910 | MtrunA17_Chr1g0163241 | 61.143 | 175 | 21 | 4 | 1 | 148 | 7 | 161 | 1.17e-54 | 181 |
| Msa0112910 | MtrunA17_Chr1g0163191 | 51.220 | 164 | 47 | 3 | 1 | 137 | 1 | 158 | 3.66e-38 | 137 |
| Msa0112910 | MtrunA17_Chr1g0163111 | 65.517 | 87 | 30 | 0 | 399 | 485 | 144 | 230 | 1.57e-34 | 129 |
| Msa0112910 | MtrunA17_Chr1g0163111 | 45.000 | 160 | 74 | 3 | 155 | 310 | 1 | 150 | 1.79e-32 | 124 |
| Msa0112910 | MtrunA17_Chr1g0163111 | 28.662 | 157 | 64 | 3 | 326 | 482 | 1 | 109 | 5.33e-13 | 68.6 |
| Msa0112910 | MtrunA17_Chr1g0163151 | 48.462 | 130 | 61 | 1 | 155 | 284 | 1 | 124 | 2.49e-32 | 123 |
| Msa0112910 | MtrunA17_Chr1g0163151 | 70.000 | 80 | 24 | 0 | 405 | 484 | 143 | 222 | 3.14e-32 | 122 |
| Msa0112910 | MtrunA17_Chr1g0163151 | 29.299 | 157 | 66 | 3 | 326 | 482 | 1 | 112 | 1.43e-12 | 67.0 |
| Msa0112910 | MtrunA17_Chr1g0163091 | 48.889 | 135 | 68 | 1 | 155 | 289 | 1 | 134 | 5.77e-32 | 120 |
| Msa0112910 | MtrunA17_Chr1g0163091 | 36.709 | 158 | 58 | 3 | 326 | 482 | 1 | 117 | 2.98e-20 | 87.8 |
| Msa0112910 | MtrunA17_Chr1g0162151 | 48.571 | 140 | 59 | 3 | 155 | 289 | 1 | 132 | 4.09e-31 | 119 |
| Msa0112910 | MtrunA17_Chr1g0162151 | 35.669 | 157 | 61 | 2 | 326 | 482 | 1 | 117 | 3.23e-16 | 77.8 |
| Msa0112910 | MtrunA17_Chr6g0476171 | 40.845 | 142 | 76 | 4 | 151 | 285 | 6 | 146 | 7.38e-24 | 100 |
| Msa0112910 | MtrunA17_Chr6g0476171 | 45.902 | 61 | 33 | 0 | 423 | 483 | 185 | 245 | 5.05e-11 | 63.2 |
| Msa0112910 | MtrunA17_Chr1g0163131 | 51.163 | 86 | 38 | 2 | 402 | 485 | 225 | 308 | 7.28e-19 | 87.4 |
| Msa0112910 | MtrunA17_Chr1g0163131 | 21.639 | 305 | 169 | 9 | 14 | 273 | 27 | 306 | 1.11e-13 | 72.0 |
| Msa0112910 | MtrunA17_Chr3g0131891 | 27.458 | 295 | 157 | 9 | 14 | 272 | 28 | 301 | 1.21e-17 | 84.0 |
| Msa0112910 | MtrunA17_Chr1g0163221 | 28.947 | 304 | 151 | 13 | 9 | 272 | 11 | 289 | 2.97e-17 | 83.2 |
| Msa0112910 | MtrunA17_Chr4g0067431 | 26.603 | 312 | 165 | 12 | 9 | 272 | 15 | 310 | 3.32e-15 | 76.6 |
| Msa0112910 | MtrunA17_Chr5g0419211 | 39.583 | 96 | 55 | 2 | 196 | 290 | 11 | 104 | 1.70e-14 | 69.7 |
| Msa0112910 | MtrunA17_Chr1g0163101 | 36.842 | 95 | 34 | 1 | 14 | 82 | 26 | 120 | 1.31e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 89 sgRNAs with CRISPR-Local
Find 415 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTGTTCTATTGTTCTTTA+AGG | 0.153282 | 1_3:-28512096 | Msa0112910:exon |
| AAACTTTCTGGAGTTGAAAA+TGG | 0.173518 | 1_3:-28512304 | Msa0112910:CDS |
| TATTTCAAGGTTAAGATATT+TGG | 0.217827 | 1_3:-28517585 | Msa0112910:CDS |
| TTTGGGAATTGAAGGAATAT+TGG | 0.249785 | 1_3:+28517737 | None:intergenic |
| ACTATGTTTCATTTGAATAT+AGG | 0.261910 | 1_3:-28511979 | Msa0112910:three_prime_UTR |
| AGAAGTATGTGGAGAACTTT+TGG | 0.262295 | 1_3:-28517775 | Msa0112910:CDS |
| GCACACTTGAACAAATTTAA+AGG | 0.264956 | 1_3:-28513331 | Msa0112910:CDS |
| GAGCTTGATTGCTCCCTTGA+TGG | 0.268197 | 1_3:+28514686 | None:intergenic |
| AGGAAGTCATGAAAACTTTC+TGG | 0.268836 | 1_3:-28512316 | Msa0112910:CDS |
| GTGTTTGATATTTCAATTGT+AGG | 0.277734 | 1_3:-28512135 | Msa0112910:CDS |
| ATGATAGTATTCATGGTTAT+AGG | 0.301749 | 1_3:-28512248 | Msa0112910:CDS |
| AAGGATTTAACGGAACTTCT+AGG | 0.303115 | 1_3:-28514478 | Msa0112910:CDS |
| AAAGTTCTCCACATACTTCT+TGG | 0.303447 | 1_3:+28517778 | None:intergenic |
| AATACAAAGCTTAAAATCAT+AGG | 0.311752 | 1_3:+28512017 | None:intergenic |
| AATTATTATGATAGTATTCA+TGG | 0.315834 | 1_3:-28512255 | Msa0112910:CDS |
| CAATATTATCCTATGAAAAT+CGG | 0.320192 | 1_3:+28517923 | None:intergenic |
| TTGGGAATTGAAGGAATATT+GGG | 0.332157 | 1_3:+28517738 | None:intergenic |
| GCTCAAAAGACAAGAAAATA+TGG | 0.333444 | 1_3:-28517387 | Msa0112910:CDS |
| AAGAACTCACCTGAGAATAT+TGG | 0.343174 | 1_3:+28517327 | None:intergenic |
| CACACTTGAACAAATTTAAA+GGG | 0.370401 | 1_3:-28513330 | Msa0112910:CDS |
| CTTTCAAGAGGATGATTTGT+TGG | 0.401848 | 1_3:+28514449 | None:intergenic |
| ATTCATGGTTATAGGTTCTC+TGG | 0.402055 | 1_3:-28512240 | Msa0112910:CDS |
| AACTTTCTGGAGTTGAAAAT+GGG | 0.402988 | 1_3:-28512303 | Msa0112910:CDS |
| TTAAGAGTTCCTCTCCAGTT+TGG | 0.403696 | 1_3:-28511922 | Msa0112910:three_prime_UTR |
| ATAGTTTATTTCTAAAGTAT+TGG | 0.406626 | 1_3:+28517560 | None:intergenic |
| CCAAAGAGAAAAGGATTTAA+CGG | 0.410859 | 1_3:-28514488 | Msa0112910:CDS |
| CTCTCATTAACAACTTCAAC+TGG | 0.412647 | 1_3:+28513567 | None:intergenic |
| AATATTATCCTATGAAAATC+GGG | 0.414910 | 1_3:+28517924 | None:intergenic |
| CATAGGTGGGTCATATTTCA+AGG | 0.429171 | 1_3:-28517598 | Msa0112910:intron |
| GGGATTGCAAATTTAAGAGT+TGG | 0.438060 | 1_3:-28513310 | Msa0112910:CDS |
| CCAAAGGAGTTTATGAAAAG+AGG | 0.438669 | 1_3:-28512336 | Msa0112910:CDS |
| AGTTGGTGAGGACAAGACTA+TGG | 0.440819 | 1_3:-28513293 | Msa0112910:CDS |
| GAACACCATTTGGGAATTGA+AGG | 0.440819 | 1_3:+28517729 | None:intergenic |
| AAGTTCTCCACATACTTCTT+GGG | 0.445593 | 1_3:+28517779 | None:intergenic |
| AAAGAATGCCAAGTGGAGAT+TGG | 0.446068 | 1_3:-28512198 | Msa0112910:CDS |
| CTATGTTAAACAAACCAAAC+TGG | 0.450624 | 1_3:+28511908 | None:intergenic |
| AGTCACAAGAGATCTTCTAT+TGG | 0.450938 | 1_3:+28513246 | None:intergenic |
| AACAATAGAACAAGCAGCTA+AGG | 0.451255 | 1_3:+28512104 | None:intergenic |
| GTTATAGGTTCTCTGGAGGT+TGG | 0.476039 | 1_3:-28512233 | Msa0112910:CDS |
| TTTCAAGAGGATGATTTGTT+GGG | 0.476190 | 1_3:+28514450 | None:intergenic |
| CACACTTGAACAAATTCAAA+GGG | 0.482195 | 1_3:-28514898 | Msa0112910:CDS |
| GACTTACCATCTTGCAGCCA+TGG | 0.500283 | 1_3:+28515068 | None:intergenic |
| CAGTTACTATTACTCCATCA+AGG | 0.504204 | 1_3:-28514700 | Msa0112910:CDS |
| ATAGTAACTGTGAATGAAAG+TGG | 0.508232 | 1_3:+28514713 | None:intergenic |
| GGTGATAATCCAAAGAGAAA+AGG | 0.509436 | 1_3:-28514497 | Msa0112910:CDS |
| TTCTCATTATCAACTTCCAC+TGG | 0.509490 | 1_3:+28515127 | None:intergenic |
| GGGATTGCAAACTTAAGAGT+TGG | 0.509708 | 1_3:-28514878 | Msa0112910:CDS |
| ATACAAAGCTTAAAATCATA+GGG | 0.514147 | 1_3:+28512018 | None:intergenic |
| ATATTCCTTCAATTCCCAAA+TGG | 0.516176 | 1_3:-28517734 | Msa0112910:CDS |
| CAATTACCAGGTTATAAAGA+AGG | 0.517705 | 1_3:-28514533 | Msa0112910:intron |
| TGCAAATTTAAGAGTTGGTG+AGG | 0.518069 | 1_3:-28513305 | Msa0112910:CDS |
| CTCACCTGAGAATATTGGTT+GGG | 0.525860 | 1_3:+28517332 | None:intergenic |
| TTACCAACATATTGCTGCCA+TGG | 0.533213 | 1_3:+28513493 | None:intergenic |
| ACTACCCAACCAATATTCTC+AGG | 0.537077 | 1_3:-28517336 | Msa0112910:intron |
| GCACACTTGAACAAATTCAA+AGG | 0.541236 | 1_3:-28514899 | Msa0112910:CDS |
| CAGCCATGGGCGTAAGATTG+TGG | 0.541599 | 1_3:+28515082 | None:intergenic |
| CGCCCATGGCAGCAATATGT+TGG | 0.545868 | 1_3:-28513496 | Msa0112910:intron |
| GTTAAAAGAATACTTTCAAG+AGG | 0.549315 | 1_3:+28514437 | None:intergenic |
| TCAAAGAAATTAAAATCGCA+AGG | 0.552843 | 1_3:-28514665 | Msa0112910:intron |
| TGGATTATCACCACAAGAAG+AGG | 0.557132 | 1_3:+28514508 | None:intergenic |
| CAGAGGAGGCATGATTAAGA+AGG | 0.558194 | 1_3:-28515182 | Msa0112910:CDS |
| TACCAACATATTGCTGCCAT+GGG | 0.562632 | 1_3:+28513494 | None:intergenic |
| TACTTTGCAGATGGGGACAG+AGG | 0.562946 | 1_3:-28515199 | Msa0112910:intron |
| CATGGTTATAGGTTCTCTGG+AGG | 0.568382 | 1_3:-28512237 | Msa0112910:CDS |
| CAGTGGAGGCATGATTAAGA+AGG | 0.573799 | 1_3:-28513604 | Msa0112910:CDS |
| ACTTACCATCTTGCAGCCAT+GGG | 0.576629 | 1_3:+28515069 | None:intergenic |
| TACTTTGCAGGTAGGGACAG+TGG | 0.579327 | 1_3:-28513621 | Msa0112910:intron |
| TTACGCCCATGGCTGCAAGA+TGG | 0.581402 | 1_3:-28515074 | Msa0112910:intron |
| AATTACCAGGTTATAAAGAA+GGG | 0.583013 | 1_3:-28514532 | Msa0112910:intron |
| TGCAAACTTAAGAGTTGGTG+AGG | 0.587078 | 1_3:-28514873 | Msa0112910:CDS |
| ACAATAGAACAAGCAGCTAA+GGG | 0.588670 | 1_3:+28512105 | None:intergenic |
| GAGGATTCCCAAGAAGTATG+TGG | 0.591680 | 1_3:-28517786 | Msa0112910:CDS |
| GTATTCGCAGAATGTTCCAA+AGG | 0.599525 | 1_3:-28512352 | Msa0112910:intron |
| AAAGAAGGAGTTGAAGTGAG+TGG | 0.599535 | 1_3:-28517489 | Msa0112910:CDS |
| TTGCCACAATCTTACGCCCA+TGG | 0.607348 | 1_3:-28515085 | Msa0112910:CDS |
| ACTCACCTGAGAATATTGGT+TGG | 0.611304 | 1_3:+28517331 | None:intergenic |
| AGTTACTATTACTCCATCAA+GGG | 0.612733 | 1_3:-28514699 | Msa0112910:CDS |
| TGTGCTCTTGAAAAGTCACT+TGG | 0.616812 | 1_3:+28514917 | None:intergenic |
| TTGTCAAAATCTTACGCCCA+TGG | 0.624110 | 1_3:-28513510 | Msa0112910:CDS |
| CTTTCTGGAGTTGAAAATGG+GGG | 0.624916 | 1_3:-28512301 | Msa0112910:CDS |
| TTTGCAGATGGGGACAGAGG+AGG | 0.625560 | 1_3:-28515196 | Msa0112910:intron |
| AAAGAAGGGACCTCTTCTTG+TGG | 0.632268 | 1_3:-28514518 | Msa0112910:CDS |
| GAGTATCTCCAATCTCCACT+TGG | 0.650445 | 1_3:+28512190 | None:intergenic |
| ATTCATAAAAGAATGCCAAG+TGG | 0.661342 | 1_3:-28512205 | Msa0112910:CDS |
| TTTCTGGAGTTGAAAATGGG+GGG | 0.664246 | 1_3:-28512300 | Msa0112910:CDS |
| TTAAACAAACCAAACTGGAG+AGG | 0.666897 | 1_3:+28511913 | None:intergenic |
| ATATTATCCTATGAAAATCG+GGG | 0.671225 | 1_3:+28517925 | None:intergenic |
| ACTTTCTGGAGTTGAAAATG+GGG | 0.672431 | 1_3:-28512302 | Msa0112910:CDS |
| TTTGCAGGTAGGGACAGTGG+AGG | 0.713017 | 1_3:-28513618 | Msa0112910:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAATTATTTATTAAAT+TGG | + | chr1_3:28514360-28514379 | None:intergenic | 0.0% |
| !! | AAAAAATAAATAAATAAAAA+AGG | + | chr1_3:28515219-28515238 | None:intergenic | 0.0% |
| !!! | TTGTTTTTTATATATGATTA+GGG | - | chr1_3:28514201-28514220 | Msa0112910:intron | 10.0% |
| !!! | ATCATTTTATATTTATTTTG+AGG | + | chr1_3:28514452-28514471 | None:intergenic | 10.0% |
| !!! | TTTTATTTATTAAAGAATAG+TGG | + | chr1_3:28514885-28514904 | None:intergenic | 10.0% |
| !! | ATTCTTTAATAAATAAAATG+TGG | - | chr1_3:28514887-28514906 | Msa0112910:CDS | 10.0% |
| !! | ACTAATATTTAATCAATTAT+TGG | + | chr1_3:28515483-28515502 | None:intergenic | 10.0% |
| !!! | TTTTTAAAAAATAAACCAAA+AGG | - | chr1_3:28515639-28515658 | Msa0112910:intron | 10.0% |
| !!! | TTTTAAAAAATAAACCAAAA+GGG | - | chr1_3:28515640-28515659 | Msa0112910:intron | 10.0% |
| !!! | ATCATTTTATATTTATTTTG+GGG | + | chr1_3:28514452-28514471 | None:intergenic | 10.0% |
| !!! | CTATCATTTTATATTTATTT+TGG | + | chr1_3:28514454-28514473 | None:intergenic | 10.0% |
| !! | ATATTTAAAAAATGACTAAT+AGG | + | chr1_3:28515750-28515769 | None:intergenic | 10.0% |
| !!! | TTTTAATTTTTTAAGTTCTA+AGG | - | chr1_3:28517221-28517240 | Msa0112910:intron | 10.0% |
| !!! | TGTTCAACAAAAAATATTTT+GGG | - | chr1_3:28512142-28512161 | Msa0112910:CDS | 15.0% |
| !!! | ATATTTGGTTTCAAAAAAAT+TGG | - | chr1_3:28512180-28512199 | Msa0112910:CDS | 15.0% |
| !!! | TATTTGGTTTCAAAAAAATT+GGG | - | chr1_3:28512181-28512200 | Msa0112910:CDS | 15.0% |
| !!! | ATAGTTTATTTCTAAAGTAT+TGG | + | chr1_3:28512296-28512315 | None:intergenic | 15.0% |
| !! | CTTATAATATCAATAATAAG+TGG | + | chr1_3:28513689-28513708 | None:intergenic | 15.0% |
| !! | CACTTATTATTGATATTATA+AGG | - | chr1_3:28513687-28513706 | Msa0112910:intron | 15.0% |
| !!! | CTTGTTTTTTATATATGATT+AGG | - | chr1_3:28514200-28514219 | Msa0112910:intron | 15.0% |
| !!! | TTTTTTTTTAAGCAAAAGAA+GGG | + | chr1_3:28514253-28514272 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTAAGCAAAAGA+AGG | + | chr1_3:28514254-28514273 | None:intergenic | 15.0% |
| !!! | TTTTATATTTATTTTGAGGT+TGG | + | chr1_3:28514448-28514467 | None:intergenic | 15.0% |
| !! | TATTAACTAATACCAAAATT+AGG | + | chr1_3:28514833-28514852 | None:intergenic | 15.0% |
| !! | ATCAATTATTGGTAAATTAA+GGG | + | chr1_3:28515472-28515491 | None:intergenic | 15.0% |
| !! | AATCAATTATTGGTAAATTA+AGG | + | chr1_3:28515473-28515492 | None:intergenic | 15.0% |
| !! | TATAAAATGATAGAAACAAA+AGG | - | chr1_3:28514461-28514480 | Msa0112910:CDS | 15.0% |
| !! | ATTAAGCTTAATTAATGATT+TGG | - | chr1_3:28515768-28515787 | Msa0112910:intron | 15.0% |
| !!! | AGCATTTTTAATAACAAAAA+AGG | + | chr1_3:28516787-28516806 | None:intergenic | 15.0% |
| !! | AAATAAAAGTTTAGATAAGT+TGG | + | chr1_3:28516976-28516995 | None:intergenic | 15.0% |
| !! | ATCAATTATTGATAAATTCA+GGG | + | chr1_3:28517009-28517028 | None:intergenic | 15.0% |
| !! | AATCAATTATTGATAAATTC+AGG | + | chr1_3:28517010-28517029 | None:intergenic | 15.0% |
| !! | ACATTATTTCAAATTCATTA+GGG | + | chr1_3:28517107-28517126 | None:intergenic | 15.0% |
| !! | AACATTATTTCAAATTCATT+AGG | + | chr1_3:28517108-28517127 | None:intergenic | 15.0% |
| !! | TCAAATTATTGATAAGTTTA+AGG | - | chr1_3:28517192-28517211 | Msa0112910:intron | 15.0% |
| !! | TACGATTAATTACATAAAAT+AGG | - | chr1_3:28517389-28517408 | Msa0112910:CDS | 15.0% |
| !! | AATTATTATGATAGTATTCA+TGG | - | chr1_3:28517598-28517617 | Msa0112910:intron | 15.0% |
| !! | AATATTATCCTATGAAAATC+GGG | + | chr1_3:28511932-28511951 | None:intergenic | 20.0% |
| !! | CAATATTATCCTATGAAAAT+CGG | + | chr1_3:28511933-28511952 | None:intergenic | 20.0% |
| !!! | GTGTTCAACAAAAAATATTT+TGG | - | chr1_3:28512141-28512160 | Msa0112910:CDS | 20.0% |
| !!! | CTCTTAACTTTTAAATACAT+AGG | - | chr1_3:28512238-28512257 | Msa0112910:CDS | 20.0% |
| !!! | TTAACTTTTAAATACATAGG+TGG | - | chr1_3:28512241-28512260 | Msa0112910:CDS | 20.0% |
| !!! | TAACTTTTAAATACATAGGT+GGG | - | chr1_3:28512242-28512261 | Msa0112910:CDS | 20.0% |
| !! | TATTTCAAGGTTAAGATATT+TGG | - | chr1_3:28512268-28512287 | Msa0112910:CDS | 20.0% |
| !!! | TTCATCAACAGATTTTATAT+TGG | + | chr1_3:28512320-28512339 | None:intergenic | 20.0% |
| !! | GTTATATTATCAGTACAAAT+TGG | + | chr1_3:28513290-28513309 | None:intergenic | 20.0% |
| !! | TGAAAATGTTAAGAAAAATC+AGG | - | chr1_3:28513526-28513545 | Msa0112910:CDS | 20.0% |
| !!! | TTTTTTTTAAGCAAAAGAAG+GGG | + | chr1_3:28514252-28514271 | None:intergenic | 20.0% |
| !! | TAAAATGATAGAAACAAAGT+AGG | - | chr1_3:28514463-28514482 | Msa0112910:CDS | 20.0% |
| !! | AAAATGATAGAAACAAAGTA+GGG | - | chr1_3:28514464-28514483 | Msa0112910:CDS | 20.0% |
| !!! | TTTTGAATAACTATTCCTAT+TGG | - | chr1_3:28514494-28514513 | Msa0112910:CDS | 20.0% |
| !! | ATATTTAAAAAATGGCCAAT+AGG | + | chr1_3:28514512-28514531 | None:intergenic | 20.0% |
| !!! | ATTTTTGGAAACAATATTAG+TGG | + | chr1_3:28514856-28514875 | None:intergenic | 20.0% |
| !!! | GAATAGTGGTAATTTATTTT+TGG | + | chr1_3:28514871-28514890 | None:intergenic | 20.0% |
| !!! | CAACTTGTAAGTTATATTTT+TGG | + | chr1_3:28515085-28515104 | None:intergenic | 20.0% |
| !! | CAAAAATATAACTTACAAGT+TGG | - | chr1_3:28515083-28515102 | Msa0112910:CDS | 20.0% |
| !!! | TTTTATATTTATTTTGGGGT+TGG | + | chr1_3:28515684-28515703 | None:intergenic | 20.0% |
| !! | AAGTTATTAACGTTACAATT+TGG | + | chr1_3:28516033-28516052 | None:intergenic | 20.0% |
| !! | TTTAAGCTTAATTAATGATG+TGG | + | chr1_3:28516093-28516112 | None:intergenic | 20.0% |
| !!! | AAGTAGGAAATTTTTAATGA+TGG | - | chr1_3:28516203-28516222 | Msa0112910:intron | 20.0% |
| !!! | AGTAGGAAATTTTTAATGAT+GGG | - | chr1_3:28516204-28516223 | Msa0112910:intron | 20.0% |
| !! | GACAATGTAACATAAAAAAA+GGG | + | chr1_3:28516328-28516347 | None:intergenic | 20.0% |
| !! | TGACAATGTAACATAAAAAA+AGG | + | chr1_3:28516329-28516348 | None:intergenic | 20.0% |
| !!! | AATTAGTAGACATTTTTAGA+TGG | + | chr1_3:28516391-28516410 | None:intergenic | 20.0% |
| !!! | CTAAAAATGTCTACTAATTT+TGG | - | chr1_3:28516392-28516411 | Msa0112910:intron | 20.0% |
| !!! | AGATTAGTGGATTTTATTTT+TGG | + | chr1_3:28516444-28516463 | None:intergenic | 20.0% |
| !! | AACAAATTATTAGAGATTAG+TGG | + | chr1_3:28516457-28516476 | None:intergenic | 20.0% |
| !!! | CAATCTGTAAGTTATATTTT+TGG | + | chr1_3:28516653-28516672 | None:intergenic | 20.0% |
| !! | CAAAAATATAACTTACAGAT+TGG | - | chr1_3:28516651-28516670 | Msa0112910:intron | 20.0% |
| !! | TTAAAGAAATTCAAATCTCA+AGG | - | chr1_3:28516756-28516775 | Msa0112910:intron | 20.0% |
| !! | ACAAATTATTTCAAAGTTCT+AGG | - | chr1_3:28517149-28517168 | Msa0112910:intron | 20.0% |
| !! | CAAATTATTTCAAAGTTCTA+GGG | - | chr1_3:28517150-28517169 | Msa0112910:intron | 20.0% |
| !!! | TTTTATGTAATTAATCGTAC+CGG | + | chr1_3:28517388-28517407 | None:intergenic | 20.0% |
| !!! | TCATAATAATTCACTTTTAC+AGG | + | chr1_3:28517589-28517608 | None:intergenic | 20.0% |
| !! | ATACAAAGCTTAAAATCATA+GGG | + | chr1_3:28517838-28517857 | None:intergenic | 20.0% |
| !! | AATACAAAGCTTAAAATCAT+AGG | + | chr1_3:28517839-28517858 | None:intergenic | 20.0% |
| !! | ACTATGTTTCATTTGAATAT+AGG | - | chr1_3:28517874-28517893 | Msa0112910:intron | 20.0% |
| !!! | TTAAGTTTTAAACAACTCAA+AGG | + | chr1_3:28517915-28517934 | None:intergenic | 20.0% |
| ! | ATATTATCCTATGAAAATCG+GGG | + | chr1_3:28511931-28511950 | None:intergenic | 25.0% |
| ! | GCAAACACACATAAATAAAA+CGG | + | chr1_3:28512007-28512026 | None:intergenic | 25.0% |
| !!! | TTTTTTGTTGAACACCATTT+GGG | + | chr1_3:28512136-28512155 | None:intergenic | 25.0% |
| !!! | ATTTTTTGTTGAACACCATT+TGG | + | chr1_3:28512137-28512156 | None:intergenic | 25.0% |
| !!! | TCAACAAAAAATATTTTGGG+TGG | - | chr1_3:28512145-28512164 | Msa0112910:CDS | 25.0% |
| !!! | TGCAAAGTTTCTGAAATATA+TGG | - | chr1_3:28512211-28512230 | Msa0112910:CDS | 25.0% |
| !! | TAACTTCCTTTTCAATTTCA+CGG | - | chr1_3:28512550-28512569 | Msa0112910:intron | 25.0% |
| !!! | TTAGATTGTGGATTAGATTT+AGG | + | chr1_3:28512756-28512775 | None:intergenic | 25.0% |
| ! | TATAACAAGTAAGTCTATGT+TGG | - | chr1_3:28513304-28513323 | Msa0112910:CDS | 25.0% |
| ! | TTCTTTCAACAAGAATTCTA+TGG | + | chr1_3:28513391-28513410 | None:intergenic | 25.0% |
| ! | TGAAATTTGTAAGAGAAAAC+CGG | - | chr1_3:28513493-28513512 | Msa0112910:intron | 25.0% |
| !! | ACATTTTCATTATGTTCTAC+CGG | + | chr1_3:28513515-28513534 | None:intergenic | 25.0% |
| !!! | TGTTTGTTGGTTTTTCTTTT+TGG | - | chr1_3:28514118-28514137 | Msa0112910:intron | 25.0% |
| !!! | TTTAATTTTCTTGAGGGTTT+TGG | - | chr1_3:28514149-28514168 | Msa0112910:intron | 25.0% |
| !! | AAAAAAAATCAAAAGGGTGT+AGG | - | chr1_3:28514411-28514430 | Msa0112910:intron | 25.0% |
| ! | AAATGATAGAAACAAAGTAG+GGG | - | chr1_3:28514465-28514484 | Msa0112910:CDS | 25.0% |
| ! | GGCAATGTAACATAAAAAAA+GGG | + | chr1_3:28514753-28514772 | None:intergenic | 25.0% |
| ! | TGGCAATGTAACATAAAAAA+AGG | + | chr1_3:28514754-28514773 | None:intergenic | 25.0% |
| !! | CTAAAAATGTCTCCTAATTT+TGG | - | chr1_3:28514818-28514837 | Msa0112910:CDS | 25.0% |
| ! | TCAAAGAAATTAAAATCGCA+AGG | - | chr1_3:28515188-28515207 | Msa0112910:CDS | 25.0% |
| ! | TTCTTTATAACCTGGTAATT+GGG | + | chr1_3:28515321-28515340 | None:intergenic | 25.0% |
| ! | AATTACCAGGTTATAAAGAA+GGG | - | chr1_3:28515321-28515340 | Msa0112910:intron | 25.0% |
| ! | GTTAAAAGAATACTTTCAAG+AGG | + | chr1_3:28515419-28515438 | None:intergenic | 25.0% |
| ! | TAAAAAATAAACCAAAAGGG+TGG | - | chr1_3:28515643-28515662 | Msa0112910:intron | 25.0% |
| ! | AAAATGATAGAAACAAAAGG+AGG | - | chr1_3:28515700-28515719 | Msa0112910:intron | 25.0% |
| ! | AAATGATAGAAACAAAAGGA+GGG | - | chr1_3:28515701-28515720 | Msa0112910:intron | 25.0% |
| ! | GTAACCAACAAATAACTTAA+GGG | + | chr1_3:28516066-28516085 | None:intergenic | 25.0% |
| ! | TGTAACCAACAAATAACTTA+AGG | + | chr1_3:28516065-28516084 | None:intergenic | 25.0% |
| !!! | GTTATTTGTTGGTTACATTT+TGG | - | chr1_3:28515799-28515818 | Msa0112910:intron | 25.0% |
| ! | TTGTAACGTTAATAACTCAT+GGG | + | chr1_3:28515826-28515845 | None:intergenic | 25.0% |
| ! | GCTAACAAATACTAACTTAA+GGG | + | chr1_3:28515855-28515874 | None:intergenic | 25.0% |
| ! | ACTAATAGTGAGGATTTATT+TGG | + | chr1_3:28515877-28515896 | None:intergenic | 25.0% |
| ! | TGTAACCAACAAATAACTTA+AGG | - | chr1_3:28516065-28516084 | Msa0112910:intron | 25.0% |
| ! | GTAACCAACAAATAACTTAA+GGG | - | chr1_3:28516066-28516085 | Msa0112910:intron | 25.0% |
| ! | CACACTTGAACAAATTTAAA+GGG | - | chr1_3:28516523-28516542 | Msa0112910:intron | 25.0% |
| ! | GATTTGAATTTCTTTAAGCT+TGG | + | chr1_3:28516753-28516772 | None:intergenic | 25.0% |
| ! | AAGAATTTAAAGGAACTTCT+AGG | - | chr1_3:28516917-28516936 | Msa0112910:intron | 25.0% |
| !!! | TACTTTCAAGATGATTTGTT+GGG | + | chr1_3:28516948-28516967 | None:intergenic | 25.0% |
| !! | ATACTTTCAAGATGATTTGT+TGG | + | chr1_3:28516949-28516968 | None:intergenic | 25.0% |
| !! | ACATCAATCTTGAATGTTTT+AGG | + | chr1_3:28517352-28517371 | None:intergenic | 25.0% |
| ! | TTTATGTAATTAATCGTACC+GGG | + | chr1_3:28517387-28517406 | None:intergenic | 25.0% |
| ! | ATGATAGTATTCATGGTTAT+AGG | - | chr1_3:28517605-28517624 | Msa0112910:intron | 25.0% |
| ! | GTGTTTGATATTTCAATTGT+AGG | - | chr1_3:28517718-28517737 | Msa0112910:CDS | 25.0% |
| ! | AAAATATCCCCGATTTTCAT+AGG | - | chr1_3:28511921-28511940 | Msa0112910:three_prime_UTR | 30.0% |
| TTGGGAATTGAAGGAATATT+GGG | + | chr1_3:28512118-28512137 | None:intergenic | 30.0% | |
| TTTGGGAATTGAAGGAATAT+TGG | + | chr1_3:28512119-28512138 | None:intergenic | 30.0% | |
| ATATTCCTTCAATTCCCAAA+TGG | - | chr1_3:28512119-28512138 | Msa0112910:CDS | 30.0% | |
| GCTCAAAAGACAAGAAAATA+TGG | - | chr1_3:28512466-28512485 | Msa0112910:intron | 30.0% | |
| GAGAAAAATTAGTGTGGATT+TGG | - | chr1_3:28512492-28512511 | Msa0112910:intron | 30.0% | |
| ! | AATTCCTGATGATGAATATG+AGG | - | chr1_3:28512890-28512909 | Msa0112910:intron | 30.0% |
| ATTTGCATGGTAGAATCATA+TGG | - | chr1_3:28512937-28512956 | Msa0112910:intron | 30.0% | |
| AACTTTCGAATTAAGCTATC+TGG | - | chr1_3:28512990-28513009 | Msa0112910:intron | 30.0% | |
| ! | GAATTAAGCTATCTGGTTTA+TGG | - | chr1_3:28512997-28513016 | Msa0112910:intron | 30.0% |
| GCAAATAACTTCAATAATCC+TGG | + | chr1_3:28513137-28513156 | None:intergenic | 30.0% | |
| GATTATTGAAGTTATTTGCG+TGG | - | chr1_3:28513138-28513157 | Msa0112910:intron | 30.0% | |
| !! | ATCCTATTTGCTATTGCTAA+TGG | - | chr1_3:28513254-28513273 | Msa0112910:CDS | 30.0% |
| !! | TCCTATTTGCTATTGCTAAT+GGG | - | chr1_3:28513255-28513274 | Msa0112910:CDS | 30.0% |
| ! | TCTATGTTGGATAGATCTTT+TGG | - | chr1_3:28513317-28513336 | Msa0112910:CDS | 30.0% |
| AGAATTCTTGTTGAAAGAAC+AGG | - | chr1_3:28513392-28513411 | Msa0112910:intron | 30.0% | |
| TTATGCATTCTTTGTAGATG+TGG | - | chr1_3:28513415-28513434 | Msa0112910:intron | 30.0% | |
| TTACAAAAGCTACAAAAGTC+AGG | + | chr1_3:28513455-28513474 | None:intergenic | 30.0% | |
| TATTATAAGGTCTAGAGAGA+TGG | - | chr1_3:28513700-28513719 | Msa0112910:intron | 30.0% | |
| AGAAGATGCTATTAAGTTTG+TGG | - | chr1_3:28513739-28513758 | Msa0112910:intron | 30.0% | |
| GGATTATACTCAACAAACTA+TGG | - | chr1_3:28513919-28513938 | Msa0112910:intron | 30.0% | |
| AAGAAAAACCAACAAACAAG+AGG | + | chr1_3:28514116-28514135 | None:intergenic | 30.0% | |
| !!! | ATCCGCTTTTAATTTTCTTG+AGG | - | chr1_3:28514142-28514161 | Msa0112910:intron | 30.0% |
| !!! | TCCGCTTTTAATTTTCTTGA+GGG | - | chr1_3:28514143-28514162 | Msa0112910:intron | 30.0% |
| ACCCTCAAGAAAATTAAAAG+CGG | + | chr1_3:28514147-28514166 | None:intergenic | 30.0% | |
| TGAGTATATTACTTTGCAGA+TGG | - | chr1_3:28514645-28514664 | Msa0112910:intron | 30.0% | |
| GAGTATATTACTTTGCAGAT+GGG | - | chr1_3:28514646-28514665 | Msa0112910:intron | 30.0% | |
| AGTATATTACTTTGCAGATG+GGG | - | chr1_3:28514647-28514666 | Msa0112910:intron | 30.0% | |
| !!! | ACTGGTGAGCAAATTTTTTT+TGG | + | chr1_3:28514711-28514730 | None:intergenic | 30.0% |
| ! | AAAAAAAATTTGCTCACCAG+TGG | - | chr1_3:28514710-28514729 | Msa0112910:CDS | 30.0% |
| TCACCTATTTCAATTCATCA+TGG | + | chr1_3:28514914-28514933 | None:intergenic | 30.0% | |
| CACACTTGAACAAATTCAAA+GGG | - | chr1_3:28514955-28514974 | Msa0112910:intron | 30.0% | |
| ATAGTAACTGTGAATGAAAG+TGG | + | chr1_3:28515143-28515162 | None:intergenic | 30.0% | |
| AGTTACTATTACTCCATCAA+GGG | - | chr1_3:28515154-28515173 | Msa0112910:CDS | 30.0% | |
| GGGATTAAAGAAAAAGAAGT+TGG | + | chr1_3:28515301-28515320 | None:intergenic | 30.0% | |
| TTTCTTTAATCCCAATTACC+AGG | - | chr1_3:28515308-28515327 | Msa0112910:intron | 30.0% | |
| CTTCTTTATAACCTGGTAAT+TGG | + | chr1_3:28515322-28515341 | None:intergenic | 30.0% | |
| CAATTACCAGGTTATAAAGA+AGG | - | chr1_3:28515320-28515339 | Msa0112910:intron | 30.0% | |
| CCAAAGAGAAAAGGATTTAA+CGG | - | chr1_3:28515365-28515384 | Msa0112910:intron | 30.0% | |
| !! | TTTCAAGAGGATGATTTGTT+GGG | + | chr1_3:28515406-28515425 | None:intergenic | 30.0% |
| AATGATAGAAACAAAAGGAG+GGG | - | chr1_3:28515702-28515721 | Msa0112910:intron | 30.0% | |
| GTTGTAACGTTAATAACTCA+TGG | + | chr1_3:28515827-28515846 | None:intergenic | 30.0% | |
| GAGTTATTAACGTTACAACT+TGG | - | chr1_3:28515828-28515847 | Msa0112910:intron | 30.0% | |
| GGCTAACAAATACTAACTTA+AGG | + | chr1_3:28515856-28515875 | None:intergenic | 30.0% | |
| ! | CTTTTGCCAAAACGTTAAAT+AGG | - | chr1_3:28515897-28515916 | Msa0112910:intron | 30.0% |
| TTTGACGGTTGAGATTTATT+TGG | - | chr1_3:28515983-28516002 | Msa0112910:intron | 30.0% | |
| GTTGAGATTTATTTGGTTGA+CGG | - | chr1_3:28515990-28516009 | Msa0112910:intron | 30.0% | |
| !! | TTGCAAATGAACTCTAAAGT+AGG | - | chr1_3:28516187-28516206 | Msa0112910:intron | 30.0% |
| TGTACATGATGAATTGAAAC+AGG | - | chr1_3:28516476-28516495 | Msa0112910:intron | 30.0% | |
| TGTGCTCTTGAAAAATTACA+TGG | + | chr1_3:28516507-28516526 | None:intergenic | 30.0% | |
| GCACACTTGAACAAATTTAA+AGG | - | chr1_3:28516522-28516541 | Msa0112910:intron | 30.0% | |
| TTCCTTATAACCTGGTAATT+GGG | + | chr1_3:28516863-28516882 | None:intergenic | 30.0% | |
| AATTACCAGGTTATAAGGAA+GGG | - | chr1_3:28516863-28516882 | Msa0112910:intron | 30.0% | |
| !! | AAACTTTCTGGAGTTGAAAA+TGG | - | chr1_3:28517549-28517568 | Msa0112910:CDS | 30.0% |
| !! | AACTTTCTGGAGTTGAAAAT+GGG | - | chr1_3:28517550-28517569 | Msa0112910:CDS | 30.0% |
| ATTCATAAAAGAATGCCAAG+TGG | - | chr1_3:28517648-28517667 | Msa0112910:intron | 30.0% | |
| GCTTGTTCTATTGTTCTTTA+AGG | - | chr1_3:28517757-28517776 | Msa0112910:CDS | 30.0% | |
| !! | TTCTGAAATTCTTGTTGCAG+AGG | - | chr1_3:28512048-28512067 | Msa0112910:three_prime_UTR | 35.0% |
| AAGTTCTCCACATACTTCTT+GGG | + | chr1_3:28512077-28512096 | None:intergenic | 35.0% | |
| AAAGTTCTCCACATACTTCT+TGG | + | chr1_3:28512078-28512097 | None:intergenic | 35.0% | |
| !! | AGAAGTATGTGGAGAACTTT+TGG | - | chr1_3:28512078-28512097 | Msa0112910:three_prime_UTR | 35.0% |
| !! | ATATTTTGGGTGGAGAGTAA+TGG | - | chr1_3:28512155-28512174 | Msa0112910:CDS | 35.0% |
| TGGAGAGTAATGGTGATATT+TGG | - | chr1_3:28512165-28512184 | Msa0112910:CDS | 35.0% | |
| GCAACAGAAAAAGCTAAAGA+AGG | - | chr1_3:28512349-28512368 | Msa0112910:intron | 35.0% | |
| TGGCAAGAGAAAAATTAGTG+TGG | - | chr1_3:28512486-28512505 | Msa0112910:intron | 35.0% | |
| AAGAACTCACCTGAGAATAT+TGG | + | chr1_3:28512529-28512548 | None:intergenic | 35.0% | |
| TTCTAGCCGTGAAATTGAAA+AGG | + | chr1_3:28512559-28512578 | None:intergenic | 35.0% | |
| CAAGATAAAACAGGGTTAAG+CGG | + | chr1_3:28512699-28512718 | None:intergenic | 35.0% | |
| !! | GATTGTGGATTAGATTTAGG+TGG | + | chr1_3:28512753-28512772 | None:intergenic | 35.0% |
| !!! | GATTCAGTGGTTTTAGATTG+TGG | + | chr1_3:28512768-28512787 | None:intergenic | 35.0% |
| ! | TGCAAAAGTCTTTTGTTGCT+TGG | + | chr1_3:28512790-28512809 | None:intergenic | 35.0% |
| ! | ACAAAAGACTTTTGCACAAG+CGG | - | chr1_3:28512794-28512813 | Msa0112910:intron | 35.0% |
| TTACCTAAACCTTGCATCAA+GGG | - | chr1_3:28512849-28512868 | Msa0112910:intron | 35.0% | |
| ! | CGAAAGTTTTCGACAGTAAT+AGG | + | chr1_3:28512978-28512997 | None:intergenic | 35.0% |
| ! | TATGGAAAGATCTGAAACGA+TGG | - | chr1_3:28513015-28513034 | Msa0112910:intron | 35.0% |
| ! | ATGGAAAGATCTGAAACGAT+GGG | - | chr1_3:28513016-28513035 | Msa0112910:intron | 35.0% |
| ATAATACCCTTTCCCAATAG+AGG | + | chr1_3:28513048-28513067 | None:intergenic | 35.0% | |
| ATTGAGATTCCATGAGCTAA+TGG | + | chr1_3:28513114-28513133 | None:intergenic | 35.0% | |
| !! | TAGCTTGTTGCTGAATATTG+GGG | + | chr1_3:28513178-28513197 | None:intergenic | 35.0% |
| !! | GTAGCTTGTTGCTGAATATT+GGG | + | chr1_3:28513179-28513198 | None:intergenic | 35.0% |
| !! | AGTAGCTTGTTGCTGAATAT+TGG | + | chr1_3:28513180-28513199 | None:intergenic | 35.0% |
| ! | TTGGCTTATCTCAAGAGTAT+TGG | - | chr1_3:28513222-28513241 | Msa0112910:intron | 35.0% |
| !! | CCTATTTGCTATTGCTAATG+GGG | - | chr1_3:28513256-28513275 | Msa0112910:CDS | 35.0% |
| ! | TGTAGCTTTTGTAAGTGTAC+TGG | - | chr1_3:28513461-28513480 | Msa0112910:intron | 35.0% |
| ! | GTAGCTTTTGTAAGTGTACT+GGG | - | chr1_3:28513462-28513481 | Msa0112910:intron | 35.0% |
| CAGCAAAATCATTGTAGATG+AGG | - | chr1_3:28513661-28513680 | Msa0112910:intron | 35.0% | |
| TTTGCTGATATGCGTATCAT+TGG | - | chr1_3:28513869-28513888 | Msa0112910:intron | 35.0% | |
| !!! | TGGACTTTTTGAGTGATTCT+TGG | - | chr1_3:28513939-28513958 | Msa0112910:intron | 35.0% |
| AGTGATTCTTGGACTAACAT+GGG | - | chr1_3:28513950-28513969 | Msa0112910:intron | 35.0% | |
| TCTTGCTCTTCTTCTTTCTT+GGG | + | chr1_3:28514006-28514025 | None:intergenic | 35.0% | |
| TTCTTGCTCTTCTTCTTTCT+TGG | + | chr1_3:28514007-28514026 | None:intergenic | 35.0% | |
| ! | ACAAGAAGTACAAAGAGTGA+GGG | + | chr1_3:28514185-28514204 | None:intergenic | 35.0% |
| ! | AACAAGAAGTACAAAGAGTG+AGG | + | chr1_3:28514186-28514205 | None:intergenic | 35.0% |
| ! | AAATCAAAAGGGTGTAGGAA+AGG | - | chr1_3:28514416-28514435 | Msa0112910:intron | 35.0% |
| !! | CGTCAAATGAACTCTAAAAC+AGG | - | chr1_3:28514609-28514628 | Msa0112910:intron | 35.0% |
| TTCTCATTATCAACTTCCAC+TGG | + | chr1_3:28514729-28514748 | None:intergenic | 35.0% | |
| GGTCCATGATGAATTGAAAT+AGG | - | chr1_3:28514908-28514927 | Msa0112910:CDS | 35.0% | |
| GCACACTTGAACAAATTCAA+AGG | - | chr1_3:28514954-28514973 | Msa0112910:intron | 35.0% | |
| !!! | AGAAGATCTGTTTTGACTAC+TGG | - | chr1_3:28515044-28515063 | Msa0112910:intron | 35.0% |
| CAGTTACTATTACTCCATCA+AGG | - | chr1_3:28515153-28515172 | Msa0112910:CDS | 35.0% | |
| GGTGATAATCCAAAGAGAAA+AGG | - | chr1_3:28515356-28515375 | Msa0112910:intron | 35.0% | |
| ! | CCGTTAAATCCTTTTCTCTT+TGG | + | chr1_3:28515368-28515387 | None:intergenic | 35.0% |
| AAGGATTTAACGGAACTTCT+AGG | - | chr1_3:28515375-28515394 | Msa0112910:intron | 35.0% | |
| ! | CTTTCAAGAGGATGATTTGT+TGG | + | chr1_3:28515407-28515426 | None:intergenic | 35.0% |
| TGGTCCCTTAAGTTATTTGT+TGG | - | chr1_3:28515788-28515807 | Msa0112910:intron | 35.0% | |
| TTGGCAAAAGACTAATAGTG+AGG | + | chr1_3:28515887-28515906 | None:intergenic | 35.0% | |
| ! | CATGTGCCTATTTAACGTTT+TGG | + | chr1_3:28515906-28515925 | None:intergenic | 35.0% |
| TTGACGGAAGATGACTTAAA+GGG | - | chr1_3:28516006-28516025 | Msa0112910:intron | 35.0% | |
| TGGTCCCTTAAGTTATTTGT+TGG | + | chr1_3:28515788-28515807 | None:intergenic | 35.0% | |
| ! | TGATGGGTATATTACTTTGC+AGG | - | chr1_3:28516220-28516239 | Msa0112910:intron | 35.0% |
| GGTATATTACTTTGCAGGTA+GGG | - | chr1_3:28516225-28516244 | Msa0112910:intron | 35.0% | |
| CTCTCATTAACAACTTCAAC+TGG | + | chr1_3:28516289-28516308 | None:intergenic | 35.0% | |
| GGGATTGCAAATTTAAGAGT+TGG | - | chr1_3:28516543-28516562 | Msa0112910:intron | 35.0% | |
| !! | TGCAAATTTAAGAGTTGGTG+AGG | - | chr1_3:28516548-28516567 | Msa0112910:intron | 35.0% |
| AGTCACAAGAGATCTTCTAT+TGG | + | chr1_3:28516610-28516629 | None:intergenic | 35.0% | |
| ATAGTAACGGTGAATGAAAG+TGG | + | chr1_3:28516711-28516730 | None:intergenic | 35.0% | |
| CCTTGATGGAGTAATAGTAA+CGG | + | chr1_3:28515156-28515175 | None:intergenic | 35.0% | |
| CGTTACTATTACTCCATCAA+GGG | - | chr1_3:28516722-28516741 | Msa0112910:intron | 35.0% | |
| GGGATCAAAGAATAAGAAGT+TGG | + | chr1_3:28516843-28516862 | None:intergenic | 35.0% | |
| ATTCTTTGATCCCAATTACC+AGG | - | chr1_3:28516850-28516869 | Msa0112910:intron | 35.0% | |
| ATCCCAATTACCAGGTTATA+AGG | - | chr1_3:28515316-28515335 | Msa0112910:intron | 35.0% | |
| CTTCCTTATAACCTGGTAAT+TGG | + | chr1_3:28516864-28516883 | None:intergenic | 35.0% | |
| CAATTACCAGGTTATAAGGA+AGG | - | chr1_3:28516862-28516881 | Msa0112910:intron | 35.0% | |
| TGAATTATCACCACAAGAAG+AGG | + | chr1_3:28516890-28516909 | None:intergenic | 35.0% | |
| ACATTATCACCTTCTGAATC+TGG | + | chr1_3:28517322-28517341 | None:intergenic | 35.0% | |
| TGATGTGTATTCGAAATACC+CGG | - | chr1_3:28517366-28517385 | Msa0112910:CDS | 35.0% | |
| ! | CCTCTTTTCATAAACTCCTT+TGG | + | chr1_3:28517520-28517539 | None:intergenic | 35.0% |
| CCAAAGGAGTTTATGAAAAG+AGG | - | chr1_3:28517517-28517536 | Msa0112910:CDS | 35.0% | |
| AGGAAGTCATGAAAACTTTC+TGG | - | chr1_3:28517537-28517556 | Msa0112910:CDS | 35.0% | |
| !! | ACTTTCTGGAGTTGAAAATG+GGG | - | chr1_3:28517551-28517570 | Msa0112910:CDS | 35.0% |
| ATTCATGGTTATAGGTTCTC+TGG | - | chr1_3:28517613-28517632 | Msa0112910:intron | 35.0% | |
| ACAATAGAACAAGCAGCTAA+GGG | + | chr1_3:28517751-28517770 | None:intergenic | 35.0% | |
| AACAATAGAACAAGCAGCTA+AGG | + | chr1_3:28517752-28517771 | None:intergenic | 35.0% | |
| TTAAACAAACCAAACTGGAG+AGG | + | chr1_3:28517943-28517962 | None:intergenic | 35.0% | |
| GAACACCATTTGGGAATTGA+AGG | + | chr1_3:28512127-28512146 | None:intergenic | 40.0% | |
| CATAGGTGGGTCATATTTCA+AGG | - | chr1_3:28512255-28512274 | Msa0112910:CDS | 40.0% | |
| AAAGAAGGAGTTGAAGTGAG+TGG | - | chr1_3:28512364-28512383 | Msa0112910:intron | 40.0% | |
| ! | CTTGTCTTTTGAGCTTGAGT+AGG | + | chr1_3:28512424-28512443 | None:intergenic | 40.0% |
| ! | CTTGTCTTTTGAGCTTGAGT+AGG | + | chr1_3:28512424-28512443 | None:intergenic | 40.0% |
| ACTACCCAACCAATATTCTC+AGG | - | chr1_3:28512517-28512536 | Msa0112910:intron | 40.0% | |
| ! | CTCACCTGAGAATATTGGTT+GGG | + | chr1_3:28512524-28512543 | None:intergenic | 40.0% |
| ACTCACCTGAGAATATTGGT+TGG | + | chr1_3:28512525-28512544 | None:intergenic | 40.0% | |
| ! | CGCTTAACCCTGTTTTATCT+TGG | - | chr1_3:28512697-28512716 | Msa0112910:intron | 40.0% |
| !! | TGTGGATTAGATTTAGGTGG+TGG | + | chr1_3:28512750-28512769 | None:intergenic | 40.0% |
| !! | CTTTTGTTGCTTGGATTCAG+TGG | + | chr1_3:28512781-28512800 | None:intergenic | 40.0% |
| GTTTAGGTAACTGGATGAGA+GGG | + | chr1_3:28512839-28512858 | None:intergenic | 40.0% | |
| TGATGCAAGGTTTAGGTAAC+TGG | + | chr1_3:28512848-28512867 | None:intergenic | 40.0% | |
| GTTACCTAAACCTTGCATCA+AGG | - | chr1_3:28512848-28512867 | Msa0112910:intron | 40.0% | |
| TGAATATGAGGCAGGATTAG+AGG | - | chr1_3:28512902-28512921 | Msa0112910:intron | 40.0% | |
| GATTGCAAGCACAATTTGCA+TGG | - | chr1_3:28512924-28512943 | Msa0112910:intron | 40.0% | |
| GTAATAGGATCTGAACCCTT+GGG | + | chr1_3:28512963-28512982 | None:intergenic | 40.0% | |
| AGTAATAGGATCTGAACCCT+TGG | + | chr1_3:28512964-28512983 | None:intergenic | 40.0% | |
| ! | TGGAAAGATCTGAAACGATG+GGG | - | chr1_3:28513017-28513036 | Msa0112910:intron | 40.0% |
| AACAAGCTACTACTCAGGTT+TGG | - | chr1_3:28513189-28513208 | Msa0112910:intron | 40.0% | |
| CCCCATTAGCAATAGCAAAT+AGG | + | chr1_3:28513259-28513278 | None:intergenic | 40.0% | |
| !! | TTTGCTATTGCTAATGGGGT+AGG | - | chr1_3:28513260-28513279 | Msa0112910:CDS | 40.0% |
| ! | ATCTTTTGGCCATTACGCTA+GGG | - | chr1_3:28513331-28513350 | Msa0112910:CDS | 40.0% |
| CAACTAATACCCTAGCGTAA+TGG | + | chr1_3:28513343-28513362 | None:intergenic | 40.0% | |
| AGAGACATCTTCCATTTCTG+TGG | - | chr1_3:28513763-28513782 | Msa0112910:intron | 40.0% | |
| AGGAAGAGTTTCCACAGAAA+TGG | + | chr1_3:28513777-28513796 | None:intergenic | 40.0% | |
| CTCTGGCTGAGACATATAAT+GGG | - | chr1_3:28513828-28513847 | Msa0112910:intron | 40.0% | |
| CAGCAAAAGAATTGCTCTGT+TGG | + | chr1_3:28513856-28513875 | None:intergenic | 40.0% | |
| GAGTGATTCTTGGACTAACA+TGG | - | chr1_3:28513949-28513968 | Msa0112910:intron | 40.0% | |
| AGATCAACCTCTTCAACTTG+TGG | - | chr1_3:28513979-28513998 | Msa0112910:intron | 40.0% | |
| TGAAGCAAGCAAAGGTTTCA+AGG | - | chr1_3:28514036-28514055 | Msa0112910:intron | 40.0% | |
| ! | CAATCGCATTACTAGCTCTT+TGG | - | chr1_3:28514079-28514098 | Msa0112910:intron | 40.0% |
| ! | GTCTCTTTCCTCTTGTTTGT+TGG | - | chr1_3:28514105-28514124 | Msa0112910:intron | 40.0% |
| ! | AAGAAGTACAAAGAGTGAGG+GGG | + | chr1_3:28514183-28514202 | None:intergenic | 40.0% |
| ! | CAAGAAGTACAAAGAGTGAG+GGG | + | chr1_3:28514184-28514203 | None:intergenic | 40.0% |
| TATGATTAGGGTTATGCAGC+AGG | - | chr1_3:28514213-28514232 | Msa0112910:intron | 40.0% | |
| GATAGAAACAAAGTAGGGGA+AGG | - | chr1_3:28514469-28514488 | Msa0112910:CDS | 40.0% | |
| TGTGCTCTTGAAAAGTCACT+TGG | + | chr1_3:28514939-28514958 | None:intergenic | 40.0% | |
| GGGATTGCAAACTTAAGAGT+TGG | - | chr1_3:28514975-28514994 | Msa0112910:intron | 40.0% | |
| !! | TGCAAACTTAAGAGTTGGTG+AGG | - | chr1_3:28514980-28514999 | Msa0112910:intron | 40.0% |
| !!! | GATCTGTTTTGACTACTGGT+TGG | - | chr1_3:28515048-28515067 | Msa0112910:intron | 40.0% |
| TGGATTATCACCACAAGAAG+AGG | + | chr1_3:28515348-28515367 | None:intergenic | 40.0% | |
| TAGAAACAAAAGGAGGGGAA+AGG | - | chr1_3:28515707-28515726 | Msa0112910:intron | 40.0% | |
| AACCGTTAAGCCAATGTCTA+GGG | + | chr1_3:28515964-28515983 | None:intergenic | 40.0% | |
| AAACCGTTAAGCCAATGTCT+AGG | + | chr1_3:28515965-28515984 | None:intergenic | 40.0% | |
| !!! | CATTGGCTTAACGGTTTTGA+CGG | - | chr1_3:28515968-28515987 | Msa0112910:intron | 40.0% |
| GTTGACGGAAGATGACTTAA+AGG | - | chr1_3:28516005-28516024 | Msa0112910:intron | 40.0% | |
| GGGTATATTACTTTGCAGGT+AGG | - | chr1_3:28516224-28516243 | Msa0112910:intron | 40.0% | |
| TTGTCAAAATCTTACGCCCA+TGG | - | chr1_3:28516343-28516362 | Msa0112910:intron | 40.0% | |
| TACCAACATATTGCTGCCAT+GGG | + | chr1_3:28516362-28516381 | None:intergenic | 40.0% | |
| TTACCAACATATTGCTGCCA+TGG | + | chr1_3:28516363-28516382 | None:intergenic | 40.0% | |
| AGAAGATCTCTTGTGACTAC+TGG | - | chr1_3:28516612-28516631 | Msa0112910:intron | 40.0% | |
| CCGTTACTATTACTCCATCA+AGG | - | chr1_3:28516721-28516740 | Msa0112910:intron | 40.0% | |
| GTATTCGCAGAATGTTCCAA+AGG | - | chr1_3:28517501-28517520 | Msa0112910:CDS | 40.0% | |
| !! | CTTTCTGGAGTTGAAAATGG+GGG | - | chr1_3:28517552-28517571 | Msa0112910:CDS | 40.0% |
| !! | TTTCTGGAGTTGAAAATGGG+GGG | - | chr1_3:28517553-28517572 | Msa0112910:CDS | 40.0% |
| AAAGAATGCCAAGTGGAGAT+TGG | - | chr1_3:28517655-28517674 | Msa0112910:intron | 40.0% | |
| TTAAGAGTTCCTCTCCAGTT+TGG | - | chr1_3:28517931-28517950 | Msa0112910:CDS | 40.0% | |
| ! | GAGGATTCCCAAGAAGTATG+TGG | - | chr1_3:28512067-28512086 | Msa0112910:three_prime_UTR | 45.0% |
| TCGCACTACTTAAAATCGCC+TGG | + | chr1_3:28512607-28512626 | None:intergenic | 45.0% | |
| !! | ATGGCTTGGTTGGTGAATAG+CGG | + | chr1_3:28512657-28512676 | None:intergenic | 45.0% |
| GATAAAACAGGGTTAAGCGG+TGG | + | chr1_3:28512696-28512715 | None:intergenic | 45.0% | |
| GGCAAGGCCAAGATAAAACA+GGG | + | chr1_3:28512707-28512726 | None:intergenic | 45.0% | |
| AGGCAAGGCCAAGATAAAAC+AGG | + | chr1_3:28512708-28512727 | None:intergenic | 45.0% | |
| ! | GGATTAGATTTAGGTGGTGG+TGG | + | chr1_3:28512747-28512766 | None:intergenic | 45.0% |
| GGTTTAGGTAACTGGATGAG+AGG | + | chr1_3:28512840-28512859 | None:intergenic | 45.0% | |
| TCACCCTTGATGCAAGGTTT+AGG | + | chr1_3:28512855-28512874 | None:intergenic | 45.0% | |
| CTATCATCACCCTTGATGCA+AGG | + | chr1_3:28512861-28512880 | None:intergenic | 45.0% | |
| CCTGCCTCATATTCATCATC+AGG | + | chr1_3:28512897-28512916 | None:intergenic | 45.0% | |
| ! | CCTGATGATGAATATGAGGC+AGG | - | chr1_3:28512894-28512913 | Msa0112910:intron | 45.0% |
| TGGTAGAATCATATGGCCCA+AGG | - | chr1_3:28512944-28512963 | Msa0112910:intron | 45.0% | |
| GGTAGAATCATATGGCCCAA+GGG | - | chr1_3:28512945-28512964 | Msa0112910:intron | 45.0% | |
| ! | GGAAAGATCTGAAACGATGG+GGG | - | chr1_3:28513018-28513037 | Msa0112910:intron | 45.0% |
| ! | GAAAGATCTGAAACGATGGG+GGG | - | chr1_3:28513019-28513038 | Msa0112910:intron | 45.0% |
| GGGTTACCTCTATTGGGAAA+GGG | - | chr1_3:28513039-28513058 | Msa0112910:intron | 45.0% | |
| GAGTGAGATCCATTAGCTCA+TGG | - | chr1_3:28513102-28513121 | Msa0112910:intron | 45.0% | |
| AGCTCATGGAATCTCAATCC+AGG | - | chr1_3:28513116-28513135 | Msa0112910:intron | 45.0% | |
| GAAGTTATTTGCGTGGAGCA+AGG | - | chr1_3:28513145-28513164 | Msa0112910:intron | 45.0% | |
| TCAGCAACAAGCTACTACTC+AGG | - | chr1_3:28513184-28513203 | Msa0112910:intron | 45.0% | |
| CAGGTTTGGATTCGCATCTT+TGG | - | chr1_3:28513203-28513222 | Msa0112910:intron | 45.0% | |
| ! | GATCTTTTGGCCATTACGCT+AGG | - | chr1_3:28513330-28513349 | Msa0112910:CDS | 45.0% |
| TCTTCCTGTGCATATTGTGC+AGG | - | chr1_3:28513790-28513809 | Msa0112910:intron | 45.0% | |
| ATATGTCTCAGCCAGAGCTA+AGG | + | chr1_3:28513825-28513844 | None:intergenic | 45.0% | |
| GCTCTGGCTGAGACATATAA+TGG | - | chr1_3:28513827-28513846 | Msa0112910:intron | 45.0% | |
| ATATGCGTATCATTGGCCCT+TGG | - | chr1_3:28513876-28513895 | Msa0112910:intron | 45.0% | |
| GCAAGCAAAGGTTTCAAGGT+TGG | - | chr1_3:28514040-28514059 | Msa0112910:intron | 45.0% | |
| GCTAGTAATGCGATTGCGAA+CGG | + | chr1_3:28514075-28514094 | None:intergenic | 45.0% | |
| ! | TCGCATTACTAGCTCTTTGG+TGG | - | chr1_3:28514082-28514101 | Msa0112910:intron | 45.0% |
| ! | CGCATTACTAGCTCTTTGGT+GGG | - | chr1_3:28514083-28514102 | Msa0112910:intron | 45.0% |
| ! | AGAAGTACAAAGAGTGAGGG+GGG | + | chr1_3:28514182-28514201 | None:intergenic | 45.0% |
| ! | CAGAGGAGGCATGATTAAGA+AGG | - | chr1_3:28514671-28514690 | Msa0112910:CDS | 45.0% |
| ACTTACCATCTTGCAGCCAT+GGG | + | chr1_3:28514787-28514806 | None:intergenic | 45.0% | |
| GAGGTCCCTTCTTTATAACC+TGG | + | chr1_3:28515329-28515348 | None:intergenic | 45.0% | |
| AAAGAAGGGACCTCTTCTTG+TGG | - | chr1_3:28515335-28515354 | Msa0112910:intron | 45.0% | |
| AACCAAAAGGGTGGTAGCAA+AGG | - | chr1_3:28515652-28515671 | Msa0112910:intron | 45.0% | |
| TGTGTATCCACCCTAGACAT+TGG | - | chr1_3:28515951-28515970 | Msa0112910:intron | 45.0% | |
| !! | CACCCTAGACATTGGCTTAA+CGG | - | chr1_3:28515959-28515978 | Msa0112910:intron | 45.0% |
| ! | CAGTGGAGGCATGATTAAGA+AGG | - | chr1_3:28516249-28516268 | Msa0112910:intron | 45.0% |
| !! | AGTTGGTGAGGACAAGACTA+TGG | - | chr1_3:28516560-28516579 | Msa0112910:intron | 45.0% |
| GATCTCTTGTGACTACTGGT+TGG | - | chr1_3:28516616-28516635 | Msa0112910:intron | 45.0% | |
| CGTGTTTCTCCAGATTCAGA+AGG | - | chr1_3:28517310-28517329 | Msa0112910:intron | 45.0% | |
| CATGGTTATAGGTTCTCTGG+AGG | - | chr1_3:28517616-28517635 | Msa0112910:intron | 45.0% | |
| ! | GTTATAGGTTCTCTGGAGGT+TGG | - | chr1_3:28517620-28517639 | Msa0112910:intron | 45.0% |
| GAGTATCTCCAATCTCCACT+TGG | + | chr1_3:28517666-28517685 | None:intergenic | 45.0% | |
| !!! | TTTTAAAAAAAAAAATCAAA+AGG | - | chr1_3:28514404-28514423 | Msa0112910:intron | 5.0% |
| !! | TTTAAAAAAAAAAATCAAAA+GGG | - | chr1_3:28514405-28514424 | Msa0112910:intron | 5.0% |
| !! | ATCAAATAATATTTAAAAAA+TGG | + | chr1_3:28514520-28514539 | None:intergenic | 5.0% |
| !!! | AAACTTTTATTTTTTTAATT+TGG | - | chr1_3:28515445-28515464 | Msa0112910:intron | 5.0% |
| !!! | TATCATTTTATATTTATTTT+GGG | + | chr1_3:28514453-28514472 | None:intergenic | 5.0% |
| !! | ATAAACTTATTTAAAAAAAA+AGG | + | chr1_3:28517278-28517297 | None:intergenic | 5.0% |
| AAAACAGGGTTAAGCGGTGG+AGG | + | chr1_3:28512693-28512712 | None:intergenic | 50.0% | |
| !! | GATTTAGGTGGTGGTGGAAC+AGG | + | chr1_3:28512741-28512760 | None:intergenic | 50.0% |
| GATGGGGGGTTACCTCTATT+GGG | - | chr1_3:28513033-28513052 | Msa0112910:intron | 50.0% | |
| GGGGTTACCTCTATTGGGAA+AGG | - | chr1_3:28513038-28513057 | Msa0112910:intron | 50.0% | |
| CAAAGAGCCTGAACCTCAAG+AGG | - | chr1_3:28513586-28513605 | Msa0112910:CDS | 50.0% | |
| TCATGTTGTCCAGCCTCTTG+AGG | + | chr1_3:28513602-28513621 | None:intergenic | 50.0% | |
| TCAAGAGGCTGGACAACATG+AGG | - | chr1_3:28513601-28513620 | Msa0112910:CDS | 50.0% | |
| GCTATTGTGCAAGCTTCACG+AGG | - | chr1_3:28513638-28513657 | Msa0112910:intron | 50.0% | |
| TCCTGTGCATATTGTGCAGG+TGG | - | chr1_3:28513793-28513812 | Msa0112910:intron | 50.0% | |
| TCCACCTGCACAATATGCAC+AGG | + | chr1_3:28513797-28513816 | None:intergenic | 50.0% | |
| GTGTGATGCGGTGACTGATA+TGG | - | chr1_3:28513898-28513917 | Msa0112910:intron | 50.0% | |
| ! | CTTGGGACCACAAGTTGAAG+AGG | + | chr1_3:28513989-28514008 | None:intergenic | 50.0% |
| ! | CAGCAGTCTGAAGCAAGCAA+AGG | - | chr1_3:28514028-28514047 | Msa0112910:intron | 50.0% |
| ! | AGCAAAAGAAGGGGTGCAGA+GGG | + | chr1_3:28514243-28514262 | None:intergenic | 50.0% |
| ! | AAGCAAAAGAAGGGGTGCAG+AGG | + | chr1_3:28514244-28514263 | None:intergenic | 50.0% |
| TACTTTGCAGATGGGGACAG+AGG | - | chr1_3:28514654-28514673 | Msa0112910:intron | 50.0% | |
| TTGCCACAATCTTACGCCCA+TGG | - | chr1_3:28514768-28514787 | Msa0112910:CDS | 50.0% | |
| GACTTACCATCTTGCAGCCA+TGG | + | chr1_3:28514788-28514807 | None:intergenic | 50.0% | |
| GAGCTTGATTGCTCCCTTGA+TGG | + | chr1_3:28515170-28515189 | None:intergenic | 50.0% | |
| ! | CACCTTTGCTACCACCCTTT+TGG | + | chr1_3:28515657-28515676 | None:intergenic | 50.0% |
| CGTTAAGCCAATGTCTAGGG+TGG | + | chr1_3:28515961-28515980 | None:intergenic | 50.0% | |
| TACTTTGCAGGTAGGGACAG+TGG | - | chr1_3:28516232-28516251 | Msa0112910:intron | 50.0% | |
| AAGCTTGGTTGCTCCCTTGA+TGG | + | chr1_3:28516738-28516757 | None:intergenic | 50.0% | |
| GAGGTCCCTTCCTTATAACC+TGG | + | chr1_3:28516871-28516890 | None:intergenic | 50.0% | |
| AAGGAAGGGACCTCTTCTTG+TGG | - | chr1_3:28516877-28516896 | Msa0112910:intron | 50.0% | |
| TGAAAATGGGGGGACGATCA+TGG | - | chr1_3:28517563-28517582 | Msa0112910:CDS | 50.0% | |
| ACCATGTGCTCTCAGTTGCC+AGG | - | chr1_3:28512586-28512605 | Msa0112910:intron | 55.0% | |
| !! | GCTTGGTTGGTGAATAGCGG+TGG | + | chr1_3:28512654-28512673 | None:intergenic | 55.0% |
| !! | GGTGGTCATGATGGCTTGGT+TGG | + | chr1_3:28512667-28512686 | None:intergenic | 55.0% |
| GAACGGTGGTCATGATGGCT+TGG | + | chr1_3:28512671-28512690 | None:intergenic | 55.0% | |
| TGGAGGAACGGTGGTCATGA+TGG | + | chr1_3:28512676-28512695 | None:intergenic | 55.0% | |
| AGGGTTAAGCGGTGGAGGAA+CGG | + | chr1_3:28512688-28512707 | None:intergenic | 55.0% | |
| !! | ACAGGATCGGCTTGAAGGCA+AGG | + | chr1_3:28512723-28512742 | None:intergenic | 55.0% |
| !! | GTGGAACAGGATCGGCTTGA+AGG | + | chr1_3:28512728-28512747 | None:intergenic | 55.0% |
| !! | AGGTGGTGGTGGAACAGGAT+CGG | + | chr1_3:28512736-28512755 | None:intergenic | 55.0% |
| CGATGGGGGGTTACCTCTAT+TGG | - | chr1_3:28513032-28513051 | Msa0112910:intron | 55.0% | |
| TGTCCAGCCTCTTGAGGTTC+AGG | + | chr1_3:28513596-28513615 | None:intergenic | 55.0% | |
| GGTGGAAGACACCTTAGCTC+TGG | - | chr1_3:28513811-28513830 | Msa0112910:intron | 55.0% | |
| ! | CATTGGCCCTTGGTGTGATG+CGG | - | chr1_3:28513886-28513905 | Msa0112910:intron | 55.0% |
| CAGTCACCGCATCACACCAA+GGG | + | chr1_3:28513895-28513914 | None:intergenic | 55.0% | |
| TCAGTCACCGCATCACACCA+AGG | + | chr1_3:28513896-28513915 | None:intergenic | 55.0% | |
| ! | GCAAAAGAAGGGGTGCAGAG+GGG | + | chr1_3:28514242-28514261 | None:intergenic | 55.0% |
| TTTGCAGATGGGGACAGAGG+AGG | - | chr1_3:28514657-28514676 | Msa0112910:intron | 55.0% | |
| CAGCCATGGGCGTAAGATTG+TGG | + | chr1_3:28514774-28514793 | None:intergenic | 55.0% | |
| TTACGCCCATGGCTGCAAGA+TGG | - | chr1_3:28514779-28514798 | Msa0112910:CDS | 55.0% | |
| TTTGCAGGTAGGGACAGTGG+AGG | - | chr1_3:28516235-28516254 | Msa0112910:intron | 55.0% | |
| CGCCCATGGCAGCAATATGT+TGG | - | chr1_3:28516357-28516376 | Msa0112910:intron | 55.0% | |
| ! | GCCTGGCAACTGAGAGCACA+TGG | + | chr1_3:28512590-28512609 | None:intergenic | 60.0% |
| GTTAAGCGGTGGAGGAACGG+TGG | + | chr1_3:28512685-28512704 | None:intergenic | 60.0% | |
| GAGCCTGAACCTCAAGAGGC+TGG | - | chr1_3:28513590-28513609 | Msa0112910:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 28511911 | 28517964 | 28511911 | ID=Msa0112910;Name=Msa0112910 |
| chr1_3 | mRNA | 28511911 | 28517964 | 28511911 | ID=Msa0112910-mRNA-1;Parent=Msa0112910;Name=Msa0112910-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.37|0.33|1|1|1|9|187|495 |
| chr1_3 | exon | 28511911 | 28512364 | 28511911 | ID=Msa0112910-mRNA-1:exon:9410;Parent=Msa0112910-mRNA-1 |
| chr1_3 | exon | 28513252 | 28513377 | 28513252 | ID=Msa0112910-mRNA-1:exon:9409;Parent=Msa0112910-mRNA-1 |
| chr1_3 | exon | 28513497 | 28513633 | 28513497 | ID=Msa0112910-mRNA-1:exon:9408;Parent=Msa0112910-mRNA-1 |
| chr1_3 | exon | 28514450 | 28514545 | 28514450 | ID=Msa0112910-mRNA-1:exon:9407;Parent=Msa0112910-mRNA-1 |
| chr1_3 | exon | 28514666 | 28514945 | 28514666 | ID=Msa0112910-mRNA-1:exon:9406;Parent=Msa0112910-mRNA-1 |
| chr1_3 | exon | 28515075 | 28515211 | 28515075 | ID=Msa0112910-mRNA-1:exon:9405;Parent=Msa0112910-mRNA-1 |
| chr1_3 | exon | 28517337 | 28517615 | 28517337 | ID=Msa0112910-mRNA-1:exon:9404;Parent=Msa0112910-mRNA-1 |
| chr1_3 | exon | 28517699 | 28517807 | 28517699 | ID=Msa0112910-mRNA-1:exon:9403;Parent=Msa0112910-mRNA-1 |
| chr1_3 | exon | 28517908 | 28517964 | 28517908 | ID=Msa0112910-mRNA-1:exon:9402;Parent=Msa0112910-mRNA-1 |
| chr1_3 | CDS | 28517908 | 28517964 | 28517908 | ID=Msa0112910-mRNA-1:cds;Parent=Msa0112910-mRNA-1 |
| chr1_3 | CDS | 28517699 | 28517807 | 28517699 | ID=Msa0112910-mRNA-1:cds;Parent=Msa0112910-mRNA-1 |
| chr1_3 | CDS | 28517337 | 28517615 | 28517337 | ID=Msa0112910-mRNA-1:cds;Parent=Msa0112910-mRNA-1 |
| chr1_3 | CDS | 28515075 | 28515211 | 28515075 | ID=Msa0112910-mRNA-1:cds;Parent=Msa0112910-mRNA-1 |
| chr1_3 | CDS | 28514666 | 28514945 | 28514666 | ID=Msa0112910-mRNA-1:cds;Parent=Msa0112910-mRNA-1 |
| chr1_3 | CDS | 28514450 | 28514545 | 28514450 | ID=Msa0112910-mRNA-1:cds;Parent=Msa0112910-mRNA-1 |
| chr1_3 | CDS | 28513497 | 28513633 | 28513497 | ID=Msa0112910-mRNA-1:cds;Parent=Msa0112910-mRNA-1 |
| chr1_3 | CDS | 28513252 | 28513377 | 28513252 | ID=Msa0112910-mRNA-1:cds;Parent=Msa0112910-mRNA-1 |
| chr1_3 | CDS | 28512098 | 28512364 | 28512098 | ID=Msa0112910-mRNA-1:cds;Parent=Msa0112910-mRNA-1 |
| chr1_3 | three_prime_UTR | 28511911 | 28512097 | 28511911 | ID=Msa0112910-mRNA-1:three_prime_utr;Parent=Msa0112910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
