Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112920 | KEH40807.1 | 85.514 | 428 | 46 | 6 | 1 | 427 | 1 | 413 | 0.0 | 732 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112920 | A0A072VG97 | 85.514 | 428 | 46 | 6 | 1 | 427 | 1 | 413 | 0.0 | 732 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0112920 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112920 | MtrunA17_Chr1g0163231 | 87.000 | 300 | 26 | 3 | 1 | 300 | 1 | 287 | 0.0 | 529 |
| Msa0112920 | MtrunA17_Chr1g0171611 | 82.508 | 303 | 28 | 2 | 1 | 303 | 1 | 278 | 8.73e-174 | 487 |
| Msa0112920 | MtrunA17_Chr1g0163181 | 42.952 | 454 | 201 | 12 | 1 | 422 | 1 | 428 | 6.70e-108 | 325 |
| Msa0112920 | MtrunA17_Chr1g0163201 | 46.024 | 415 | 167 | 13 | 24 | 422 | 18 | 391 | 3.83e-104 | 315 |
| Msa0112920 | MtrunA17_Chr1g0163261 | 56.721 | 305 | 101 | 8 | 1 | 294 | 1 | 285 | 4.88e-103 | 308 |
| Msa0112920 | MtrunA17_Chr1g0163251 | 48.503 | 334 | 139 | 8 | 1 | 319 | 1 | 316 | 1.51e-94 | 290 |
| Msa0112920 | MtrunA17_Chr1g0163111 | 42.586 | 263 | 113 | 11 | 162 | 422 | 1 | 227 | 9.41e-51 | 171 |
| Msa0112920 | MtrunA17_Chr1g0163151 | 40.426 | 235 | 110 | 7 | 189 | 422 | 15 | 220 | 6.81e-45 | 155 |
| Msa0112920 | MtrunA17_Chr1g0163241 | 59.375 | 128 | 48 | 2 | 24 | 148 | 22 | 148 | 6.60e-44 | 151 |
| Msa0112920 | MtrunA17_Chr6g0476171 | 36.981 | 265 | 139 | 7 | 159 | 422 | 7 | 244 | 6.45e-41 | 145 |
| Msa0112920 | MtrunA17_Chr1g0163191 | 55.285 | 123 | 51 | 1 | 1 | 123 | 1 | 119 | 2.79e-40 | 141 |
| Msa0112920 | MtrunA17_Chr1g0162151 | 41.603 | 262 | 98 | 11 | 162 | 423 | 1 | 207 | 1.16e-39 | 141 |
| Msa0112920 | MtrunA17_Chr3g0131891 | 32.450 | 302 | 171 | 13 | 6 | 290 | 16 | 301 | 4.73e-31 | 121 |
| Msa0112920 | MtrunA17_Chr7g0233561 | 30.820 | 305 | 182 | 9 | 6 | 290 | 15 | 310 | 1.51e-30 | 120 |
| Msa0112920 | MtrunA17_Chr8g0390841 | 24.510 | 510 | 275 | 15 | 2 | 424 | 32 | 518 | 3.13e-30 | 122 |
| Msa0112920 | MtrunA17_Chr1g0163131 | 47.059 | 153 | 71 | 4 | 279 | 422 | 154 | 305 | 1.11e-29 | 117 |
| Msa0112920 | MtrunA17_Chr1g0163131 | 27.483 | 302 | 195 | 7 | 5 | 291 | 14 | 306 | 5.20e-27 | 110 |
| Msa0112920 | MtrunA17_Chr1g0162161 | 43.151 | 146 | 63 | 5 | 25 | 156 | 4 | 143 | 3.62e-29 | 111 |
| Msa0112920 | MtrunA17_Chr1g0163101 | 36.095 | 169 | 93 | 4 | 2 | 156 | 3 | 170 | 2.09e-27 | 107 |
| Msa0112920 | MtrunA17_Chr1g0163091 | 47.368 | 133 | 58 | 4 | 162 | 294 | 1 | 121 | 1.04e-25 | 102 |
| Msa0112920 | MtrunA17_Chr1g0208771 | 25.159 | 473 | 256 | 19 | 24 | 424 | 12 | 458 | 2.31e-25 | 107 |
| Msa0112920 | MtrunA17_Chr1g0163121 | 39.416 | 137 | 80 | 2 | 20 | 156 | 6 | 139 | 9.26e-25 | 99.4 |
| Msa0112920 | MtrunA17_Chr7g0233521 | 27.778 | 288 | 158 | 8 | 25 | 290 | 2 | 261 | 8.64e-24 | 100 |
| Msa0112920 | MtrunA17_Chr7g0233541 | 27.119 | 295 | 168 | 7 | 25 | 290 | 2 | 278 | 1.08e-22 | 97.4 |
| Msa0112920 | MtrunA17_Chr7g0233531 | 29.930 | 284 | 157 | 10 | 25 | 290 | 2 | 261 | 1.50e-22 | 96.7 |
| Msa0112920 | MtrunA17_Chr1g0163141 | 36.923 | 130 | 73 | 2 | 23 | 144 | 9 | 137 | 1.56e-22 | 94.4 |
| Msa0112920 | MtrunA17_Chr1g0163081 | 41.304 | 138 | 72 | 4 | 25 | 156 | 6 | 140 | 2.28e-22 | 92.8 |
| Msa0112920 | MtrunA17_Chr5g0419201 | 34.444 | 180 | 92 | 4 | 3 | 156 | 10 | 189 | 7.96e-22 | 92.4 |
| Msa0112920 | MtrunA17_Chr1g0163221 | 27.241 | 290 | 192 | 7 | 9 | 290 | 11 | 289 | 1.02e-21 | 95.9 |
| Msa0112920 | MtrunA17_Chr4g0067431 | 26.230 | 305 | 193 | 10 | 9 | 290 | 15 | 310 | 5.09e-21 | 93.2 |
| Msa0112920 | MtrunA17_Chr6g0476181 | 39.669 | 121 | 71 | 2 | 25 | 144 | 2 | 121 | 5.46e-21 | 89.4 |
| Msa0112920 | MtrunA17_Chr7g0233571 | 30.857 | 175 | 112 | 3 | 6 | 176 | 7 | 176 | 1.83e-20 | 89.7 |
| Msa0112920 | MtrunA17_Chr1g0163071 | 25.084 | 299 | 176 | 10 | 25 | 290 | 2 | 285 | 2.81e-19 | 88.2 |
| Msa0112920 | MtrunA17_Chr3g0103181 | 25.000 | 288 | 195 | 9 | 6 | 290 | 9 | 278 | 8.28e-19 | 86.3 |
| Msa0112920 | MtrunA17_Chr3g0103151 | 32.639 | 144 | 87 | 3 | 6 | 147 | 9 | 144 | 4.35e-18 | 81.3 |
| Msa0112920 | MtrunA17_Chr6g0467351 | 39.831 | 118 | 64 | 3 | 9 | 123 | 15 | 128 | 5.14e-18 | 82.8 |
| Msa0112920 | MtrunA17_Chr3g0103171 | 26.103 | 272 | 184 | 8 | 24 | 290 | 5 | 264 | 1.30e-17 | 82.4 |
| Msa0112920 | MtrunA17_Chr3g0103191 | 28.505 | 214 | 138 | 6 | 6 | 214 | 9 | 212 | 1.99e-17 | 81.6 |
| Msa0112920 | MtrunA17_Chr1g0163161 | 35.878 | 131 | 70 | 5 | 37 | 156 | 1 | 128 | 4.65e-15 | 71.6 |
| Msa0112920 | MtrunA17_Chr1g0163061 | 36.634 | 101 | 61 | 2 | 8 | 105 | 14 | 114 | 1.30e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112920 | AT3G18990.2 | 23.757 | 362 | 206 | 11 | 9 | 315 | 6 | 352 | 1.12e-12 | 69.7 |
| Msa0112920 | AT3G18990.1 | 23.547 | 344 | 198 | 10 | 9 | 296 | 6 | 340 | 5.00e-12 | 67.4 |
| Msa0112920 | AT1G49475.1 | 33.898 | 118 | 69 | 5 | 9 | 123 | 34 | 145 | 4.85e-11 | 62.0 |
Find 69 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTGCAGATGACCCTTTA+AGG | 0.106528 | 1_3:-28577891 | None:intergenic |
| GTGCTCAAAAGGAAATATTT+TGG | 0.171981 | 1_3:+28577108 | Msa0112920:CDS |
| AAAATCTTAACCTTAAAATA+TGG | 0.178478 | 1_3:-28577230 | None:intergenic |
| TCTTCTTATGATGATGATAT+TGG | 0.197327 | 1_3:+28578235 | Msa0112920:CDS |
| ATTATCAGTCAACAGGATTT+AGG | 0.220407 | 1_3:+28578968 | Msa0112920:CDS |
| ATATTTGGTTTAAGAGAAAT+TGG | 0.235240 | 1_3:+28577147 | Msa0112920:CDS |
| AGAAATTTGTGGAGAAATAT+TGG | 0.241294 | 1_3:+28577045 | Msa0112920:CDS |
| TTTGGAAGTCTAAGAATTAC+TGG | 0.251892 | 1_3:-28577083 | None:intergenic |
| GCTTTAGTATTCAAATATTT+AGG | 0.260785 | 1_3:+28577203 | Msa0112920:CDS |
| AGTCTAAGAATTACTGGATT+TGG | 0.299817 | 1_3:-28577077 | None:intergenic |
| TATTTGAATGAGAACCTTAA+AGG | 0.312071 | 1_3:+28577877 | Msa0112920:CDS |
| ATATTTCTCCACAAATTTCT+TGG | 0.318034 | 1_3:-28577042 | None:intergenic |
| ACTATCTTCAAGAACTCTTC+TGG | 0.329140 | 1_3:-28576787 | None:intergenic |
| AAGAAGCATAAAGAGCTTCA+TGG | 0.346703 | 1_3:+28578892 | Msa0112920:CDS |
| CTTCTTATGATGATGATATT+GGG | 0.358933 | 1_3:+28578236 | Msa0112920:CDS |
| TGGAGCGTGAAGGTGATATT+TGG | 0.370024 | 1_3:+28577132 | Msa0112920:CDS |
| GGGAAGAGAAGAGGCATTGA+AGG | 0.377729 | 1_3:+28578256 | Msa0112920:CDS |
| AACATCACCTTCACTTTCAT+AGG | 0.384516 | 1_3:-28577934 | None:intergenic |
| GAAGATTGCAAATTGAAGAT+TGG | 0.386030 | 1_3:+28579018 | Msa0112920:CDS |
| TCGAAATCATGAACTACATA+AGG | 0.397577 | 1_3:+28576810 | Msa0112920:CDS |
| TTTGGCTTGGGTAATAGTTA+TGG | 0.402099 | 1_3:-28578085 | None:intergenic |
| TATTTCTCCACAAATTTCTT+GGG | 0.405795 | 1_3:-28577041 | None:intergenic |
| TCATCTGCAAGCATTAGATT+TGG | 0.416468 | 1_3:+28577901 | Msa0112920:CDS |
| TTTGCAAAGTCTCTAAAAGA+TGG | 0.419454 | 1_3:+28577176 | Msa0112920:CDS |
| CATTGTGTTTCAGCAGACTT+AGG | 0.419879 | 1_3:+28578711 | Msa0112920:intron |
| GACAATTCAAGTTCAAAACT+TGG | 0.430631 | 1_3:-28577637 | None:intergenic |
| GTGACATATTATCAGTCAAC+AGG | 0.441169 | 1_3:+28578961 | Msa0112920:CDS |
| AAATTTGTGGAGTTGACAAA+TGG | 0.443876 | 1_3:+28578916 | Msa0112920:CDS |
| ACTTCCAAATGGTGCTCAAA+AGG | 0.444677 | 1_3:+28577097 | Msa0112920:CDS |
| AAATCTTAACCTTAAAATAT+GGG | 0.446492 | 1_3:-28577229 | None:intergenic |
| GAACAATGACAAGGTTATGA+AGG | 0.451012 | 1_3:+28578205 | Msa0112920:intron |
| ATTTGAATGAGAACCTTAAA+GGG | 0.452692 | 1_3:+28577878 | Msa0112920:CDS |
| AGAGCTTCATGGAAAATTTG+TGG | 0.455759 | 1_3:+28578903 | Msa0112920:CDS |
| GGCAAATGGCTTCCAACCAC+TGG | 0.462531 | 1_3:-28577992 | None:intergenic |
| AATTTGTGGAGTTGACAAAT+GGG | 0.465975 | 1_3:+28578917 | Msa0112920:CDS |
| TATTTGGTTTAAGAGAAATT+GGG | 0.488183 | 1_3:+28577148 | Msa0112920:CDS |
| TTACGCCCATGGCTATACTT+TGG | 0.489114 | 1_3:+28577666 | Msa0112920:CDS |
| AACAACTAGTACTCTAGTAG+TGG | 0.499577 | 1_3:-28579110 | None:intergenic |
| GAGGGTTCCCAAGAAATTTG+TGG | 0.503049 | 1_3:+28577034 | Msa0112920:intron |
| CGAAATCATGAACTACATAA+GGG | 0.505471 | 1_3:+28576811 | Msa0112920:CDS |
| ACAGGATTTAGGTTCTATGC+AGG | 0.511151 | 1_3:+28578979 | Msa0112920:CDS |
| GAGAGGAGGTATGATTAAGA+AGG | 0.513052 | 1_3:+28577537 | Msa0112920:CDS |
| TTCATTGATGAAAGTTGTGA+AGG | 0.513828 | 1_3:+28577293 | Msa0112920:CDS |
| TACTTTGCAGGTAGTAAGAG+AGG | 0.516159 | 1_3:+28577520 | Msa0112920:intron |
| TTTGTGGAGTTGACAAATGG+GGG | 0.523569 | 1_3:+28578919 | Msa0112920:CDS |
| GATTTAGGTTCTATGCAGGT+TGG | 0.523741 | 1_3:+28578983 | Msa0112920:CDS |
| GACTTACCAAAGTATAGCCA+TGG | 0.533080 | 1_3:-28577672 | None:intergenic |
| GTAATTCTTAGACTTCCAAA+TGG | 0.548786 | 1_3:+28577086 | Msa0112920:CDS |
| GAGGCATTGAAGGAAGTTCA+AGG | 0.552649 | 1_3:+28578266 | Msa0112920:CDS |
| ACACGAATCTCGATTGTGAT+CGG | 0.556178 | 1_3:-28578750 | None:intergenic |
| GACAATGTTACTAATAGTGC+TGG | 0.567424 | 1_3:+28577353 | Msa0112920:CDS |
| ATAGTTATGGTGAATGAAAG+TGG | 0.568370 | 1_3:-28578072 | None:intergenic |
| ACAACTAGTACTCTAGTAGT+GGG | 0.569352 | 1_3:-28579109 | None:intergenic |
| ATTTGTGGAGTTGACAAATG+GGG | 0.577541 | 1_3:+28578918 | Msa0112920:CDS |
| TACGCTCTTGAAAAGTCACT+TGG | 0.579292 | 1_3:-28577856 | None:intergenic |
| GATGATATTGGGAAGAGAAG+AGG | 0.582027 | 1_3:+28578247 | Msa0112920:CDS |
| TCGTGTGAATTCTACTTACC+CGG | 0.582737 | 1_3:+28578767 | Msa0112920:CDS |
| TTAGTATTCAAATATTTAGG+TGG | 0.586781 | 1_3:+28577206 | Msa0112920:CDS |
| ATAGTGCTGGCACATCTCAA+AGG | 0.602521 | 1_3:+28577366 | Msa0112920:CDS |
| CTTGCATTGTGACCAGTGGT+TGG | 0.607128 | 1_3:+28577980 | Msa0112920:CDS |
| AGTACATACTCGAAAGAACA+TGG | 0.608206 | 1_3:-28578294 | None:intergenic |
| TTGTCACAATCTTACGCCCA+TGG | 0.612713 | 1_3:+28577655 | Msa0112920:CDS |
| TGTGTTTCAGCAGACTTAGG+TGG | 0.616192 | 1_3:+28578714 | Msa0112920:intron |
| ATAACTATTACCCAAGCCAA+AGG | 0.622711 | 1_3:+28578087 | Msa0112920:CDS |
| TTTGCAGGTAGTAAGAGAGG+AGG | 0.644007 | 1_3:+28577523 | Msa0112920:intron |
| ACTTACCAAAGTATAGCCAT+GGG | 0.659069 | 1_3:-28577671 | None:intergenic |
| AGAACTTGCATTGTGACCAG+TGG | 0.689771 | 1_3:+28577976 | Msa0112920:CDS |
| CAACTAGTACTCTAGTAGTG+GGG | 0.703552 | 1_3:-28579108 | None:intergenic |
| GAACATGCCTATGAAAGTGA+AGG | 0.707159 | 1_3:+28577927 | Msa0112920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTAAATAAAGTAAGA+AGG | - | chr1_3:28578118-28578137 | None:intergenic | 10.0% |
| !!! | AGTTTTTAGATTTTTTAAAT+AGG | + | chr1_3:28578324-28578343 | Msa0112920:intron | 10.0% |
| !!! | CTTTTTAAAAAATTATAACT+AGG | + | chr1_3:28578380-28578399 | Msa0112920:intron | 10.0% |
| !!! | TTTTGAATTTATCATAATTT+AGG | + | chr1_3:28578456-28578475 | Msa0112920:intron | 10.0% |
| !! | ATAAATTATTTAAAAGTTCA+AGG | + | chr1_3:28578520-28578539 | Msa0112920:intron | 10.0% |
| !!! | TTTTTTTAAATAAAGTAAGA+AGG | - | chr1_3:28578118-28578137 | None:intergenic | 10.0% |
| !!! | AGTTTTTAGATTTTTTAAAT+AGG | + | chr1_3:28578324-28578343 | Msa0112920:intron | 10.0% |
| !!! | CTTTTTAAAAAATTATAACT+AGG | + | chr1_3:28578380-28578399 | Msa0112920:intron | 10.0% |
| !!! | TTTTGAATTTATCATAATTT+AGG | + | chr1_3:28578456-28578475 | Msa0112920:intron | 10.0% |
| !! | ATAAATTATTTAAAAGTTCA+AGG | + | chr1_3:28578520-28578539 | Msa0112920:intron | 10.0% |
| !! | ATTATTAACAAATGTATAGT+TGG | - | chr1_3:28576936-28576955 | None:intergenic | 15.0% |
| !! | ACAATAATCATTTATGAATA+AGG | - | chr1_3:28577006-28577025 | None:intergenic | 15.0% |
| !! | AAATCTTAACCTTAAAATAT+GGG | - | chr1_3:28577232-28577251 | None:intergenic | 15.0% |
| !! | AAAATCTTAACCTTAAAATA+TGG | - | chr1_3:28577233-28577252 | None:intergenic | 15.0% |
| !!! | TATTTTAAGGTTAAGATTTT+TGG | + | chr1_3:28577233-28577252 | Msa0112920:CDS | 15.0% |
| !!! | TTCATCAATGAATTTTATAT+TGG | - | chr1_3:28577285-28577304 | None:intergenic | 15.0% |
| !!! | GTTCAAATATTATTTTTTGA+AGG | + | chr1_3:28577718-28577737 | Msa0112920:intron | 15.0% |
| !!! | GTTCTAAATTATTAGTTATT+TGG | + | chr1_3:28577748-28577767 | Msa0112920:intron | 15.0% |
| !!! | TATAAGTTACTAGTAAATTT+TGG | + | chr1_3:28577788-28577807 | Msa0112920:intron | 15.0% |
| !!! | AACTTGTAAGTTATATTTTT+TGG | - | chr1_3:28578016-28578035 | None:intergenic | 15.0% |
| !! | AAAAAATATAACTTACAAGT+TGG | + | chr1_3:28578015-28578034 | Msa0112920:CDS | 15.0% |
| !! | CAATTGATATTAAACAAATT+TGG | - | chr1_3:28578167-28578186 | None:intergenic | 15.0% |
| !!! | TGAACTAGTTTTTTTTTAAT+TGG | - | chr1_3:28578547-28578566 | None:intergenic | 15.0% |
| !! | ATTATTAACAAATGTATAGT+TGG | - | chr1_3:28576936-28576955 | None:intergenic | 15.0% |
| !! | ACAATAATCATTTATGAATA+AGG | - | chr1_3:28577006-28577025 | None:intergenic | 15.0% |
| !! | AAATCTTAACCTTAAAATAT+GGG | - | chr1_3:28577232-28577251 | None:intergenic | 15.0% |
| !! | AAAATCTTAACCTTAAAATA+TGG | - | chr1_3:28577233-28577252 | None:intergenic | 15.0% |
| !!! | TATTTTAAGGTTAAGATTTT+TGG | + | chr1_3:28577233-28577252 | Msa0112920:CDS | 15.0% |
| !!! | TTCATCAATGAATTTTATAT+TGG | - | chr1_3:28577285-28577304 | None:intergenic | 15.0% |
| !!! | GTTCAAATATTATTTTTTGA+AGG | + | chr1_3:28577718-28577737 | Msa0112920:intron | 15.0% |
| !!! | GTTCTAAATTATTAGTTATT+TGG | + | chr1_3:28577748-28577767 | Msa0112920:intron | 15.0% |
| !!! | TATAAGTTACTAGTAAATTT+TGG | + | chr1_3:28577788-28577807 | Msa0112920:intron | 15.0% |
| !!! | AACTTGTAAGTTATATTTTT+TGG | - | chr1_3:28578016-28578035 | None:intergenic | 15.0% |
| !! | AAAAAATATAACTTACAAGT+TGG | + | chr1_3:28578015-28578034 | Msa0112920:CDS | 15.0% |
| !! | CAATTGATATTAAACAAATT+TGG | - | chr1_3:28578167-28578186 | None:intergenic | 15.0% |
| !!! | TGAACTAGTTTTTTTTTAAT+TGG | - | chr1_3:28578547-28578566 | None:intergenic | 15.0% |
| !!! | ATATTTGGTTTAAGAGAAAT+TGG | + | chr1_3:28577147-28577166 | Msa0112920:CDS | 20.0% |
| !!! | TATTTGGTTTAAGAGAAATT+GGG | + | chr1_3:28577148-28577167 | Msa0112920:CDS | 20.0% |
| !! | GCTTTAGTATTCAAATATTT+AGG | + | chr1_3:28577203-28577222 | Msa0112920:CDS | 20.0% |
| !! | TTAGTATTCAAATATTTAGG+TGG | + | chr1_3:28577206-28577225 | Msa0112920:CDS | 20.0% |
| !!! | TTGTTATTCTACCTTATATA+TGG | + | chr1_3:28577470-28577489 | Msa0112920:intron | 20.0% |
| !!! | ATCTATTTTAGCCATATATA+AGG | - | chr1_3:28577484-28577503 | None:intergenic | 20.0% |
| !!! | GTTTTTTTTTTTTACTTTGC+AGG | + | chr1_3:28577508-28577527 | Msa0112920:intron | 20.0% |
| !! | TCGTCAAAAAAAAAAAAACT+TGG | - | chr1_3:28577607-28577626 | None:intergenic | 20.0% |
| !!! | AAGTTATATTTTTTGGCAAA+TGG | - | chr1_3:28578009-28578028 | None:intergenic | 20.0% |
| !! | TTTAACATAATTAATCCTAC+CGG | - | chr1_3:28578789-28578808 | None:intergenic | 20.0% |
| !! | AGGATTAATTATGTTAAATG+TGG | + | chr1_3:28578791-28578810 | Msa0112920:intron | 20.0% |
| !!! | ATATTTGGTTTAAGAGAAAT+TGG | + | chr1_3:28577147-28577166 | Msa0112920:CDS | 20.0% |
| !!! | TATTTGGTTTAAGAGAAATT+GGG | + | chr1_3:28577148-28577167 | Msa0112920:CDS | 20.0% |
| !! | GCTTTAGTATTCAAATATTT+AGG | + | chr1_3:28577203-28577222 | Msa0112920:CDS | 20.0% |
| !! | TTAGTATTCAAATATTTAGG+TGG | + | chr1_3:28577206-28577225 | Msa0112920:CDS | 20.0% |
| !!! | TTGTTATTCTACCTTATATA+TGG | + | chr1_3:28577470-28577489 | Msa0112920:intron | 20.0% |
| !!! | ATCTATTTTAGCCATATATA+AGG | - | chr1_3:28577484-28577503 | None:intergenic | 20.0% |
| !!! | GTTTTTTTTTTTTACTTTGC+AGG | + | chr1_3:28577508-28577527 | Msa0112920:intron | 20.0% |
| !! | TCGTCAAAAAAAAAAAAACT+TGG | - | chr1_3:28577607-28577626 | None:intergenic | 20.0% |
| !!! | AAGTTATATTTTTTGGCAAA+TGG | - | chr1_3:28578009-28578028 | None:intergenic | 20.0% |
| !! | TTTAACATAATTAATCCTAC+CGG | - | chr1_3:28578789-28578808 | None:intergenic | 20.0% |
| !! | AGGATTAATTATGTTAAATG+TGG | + | chr1_3:28578791-28578810 | Msa0112920:intron | 20.0% |
| !! | GATTGTGATTTGTAATTGAA+AGG | - | chr1_3:28576914-28576933 | None:intergenic | 25.0% |
| ! | TATTTCTCCACAAATTTCTT+GGG | - | chr1_3:28577044-28577063 | None:intergenic | 25.0% |
| ! | ATATTTCTCCACAAATTTCT+TGG | - | chr1_3:28577045-28577064 | None:intergenic | 25.0% |
| ! | AGAAATTTGTGGAGAAATAT+TGG | + | chr1_3:28577045-28577064 | Msa0112920:CDS | 25.0% |
| !! | TGCTCAAAAGGAAATATTTT+GGG | + | chr1_3:28577109-28577128 | Msa0112920:CDS | 25.0% |
| ! | ATTATTCAGCAAAAAATCAC+AGG | + | chr1_3:28577410-28577429 | Msa0112920:CDS | 25.0% |
| ! | TAAACCTTGAATTGAAATAG+AGG | + | chr1_3:28577830-28577849 | Msa0112920:intron | 25.0% |
| ! | TATTTGAATGAGAACCTTAA+AGG | + | chr1_3:28577877-28577896 | Msa0112920:CDS | 25.0% |
| ! | ATTTGAATGAGAACCTTAAA+GGG | + | chr1_3:28577878-28577897 | Msa0112920:CDS | 25.0% |
| !! | TCTTCTTATGATGATGATAT+TGG | + | chr1_3:28578235-28578254 | Msa0112920:CDS | 25.0% |
| !! | CTTCTTATGATGATGATATT+GGG | + | chr1_3:28578236-28578255 | Msa0112920:CDS | 25.0% |
| !! | TAACTAGGTTTTCTAACATT+AGG | + | chr1_3:28578395-28578414 | Msa0112920:intron | 25.0% |
| ! | ATTTATAATTTAAGAGGGAG+AGG | - | chr1_3:28578506-28578525 | None:intergenic | 25.0% |
| ! | TTAACATAATTAATCCTACC+GGG | - | chr1_3:28578788-28578807 | None:intergenic | 25.0% |
| !! | GATTGTGATTTGTAATTGAA+AGG | - | chr1_3:28576914-28576933 | None:intergenic | 25.0% |
| ! | TATTTCTCCACAAATTTCTT+GGG | - | chr1_3:28577044-28577063 | None:intergenic | 25.0% |
| ! | ATATTTCTCCACAAATTTCT+TGG | - | chr1_3:28577045-28577064 | None:intergenic | 25.0% |
| ! | AGAAATTTGTGGAGAAATAT+TGG | + | chr1_3:28577045-28577064 | Msa0112920:CDS | 25.0% |
| !! | TGCTCAAAAGGAAATATTTT+GGG | + | chr1_3:28577109-28577128 | Msa0112920:CDS | 25.0% |
| ! | ATTATTCAGCAAAAAATCAC+AGG | + | chr1_3:28577410-28577429 | Msa0112920:CDS | 25.0% |
| ! | TAAACCTTGAATTGAAATAG+AGG | + | chr1_3:28577830-28577849 | Msa0112920:intron | 25.0% |
| ! | TATTTGAATGAGAACCTTAA+AGG | + | chr1_3:28577877-28577896 | Msa0112920:CDS | 25.0% |
| ! | ATTTGAATGAGAACCTTAAA+GGG | + | chr1_3:28577878-28577897 | Msa0112920:CDS | 25.0% |
| !! | TCTTCTTATGATGATGATAT+TGG | + | chr1_3:28578235-28578254 | Msa0112920:CDS | 25.0% |
| !! | CTTCTTATGATGATGATATT+GGG | + | chr1_3:28578236-28578255 | Msa0112920:CDS | 25.0% |
| !! | TAACTAGGTTTTCTAACATT+AGG | + | chr1_3:28578395-28578414 | Msa0112920:intron | 25.0% |
| ! | ATTTATAATTTAAGAGGGAG+AGG | - | chr1_3:28578506-28578525 | None:intergenic | 25.0% |
| ! | TTAACATAATTAATCCTACC+GGG | - | chr1_3:28578788-28578807 | None:intergenic | 25.0% |
| TCGAAATCATGAACTACATA+AGG | + | chr1_3:28576810-28576829 | Msa0112920:CDS | 30.0% | |
| CGAAATCATGAACTACATAA+GGG | + | chr1_3:28576811-28576830 | Msa0112920:CDS | 30.0% | |
| ATAAGGATATGTAATGCAAC+AGG | - | chr1_3:28576989-28577008 | None:intergenic | 30.0% | |
| AGTCTAAGAATTACTGGATT+TGG | - | chr1_3:28577080-28577099 | None:intergenic | 30.0% | |
| TTTGGAAGTCTAAGAATTAC+TGG | - | chr1_3:28577086-28577105 | None:intergenic | 30.0% | |
| GTAATTCTTAGACTTCCAAA+TGG | + | chr1_3:28577086-28577105 | Msa0112920:CDS | 30.0% | |
| ! | GTGCTCAAAAGGAAATATTT+TGG | + | chr1_3:28577108-28577127 | Msa0112920:CDS | 30.0% |
| !! | TCAAAAGGAAATATTTTGGG+TGG | + | chr1_3:28577112-28577131 | Msa0112920:CDS | 30.0% |
| ! | TTTGCAAAGTCTCTAAAAGA+TGG | + | chr1_3:28577176-28577195 | Msa0112920:CDS | 30.0% |
| !!! | GATTTTTGGTCACAATACAT+TGG | + | chr1_3:28577247-28577266 | Msa0112920:CDS | 30.0% |
| TTCATTGATGAAAGTTGTGA+AGG | + | chr1_3:28577293-28577312 | Msa0112920:CDS | 30.0% | |
| ACATCTCAAAGGAGAAAAAA+CGG | + | chr1_3:28577377-28577396 | Msa0112920:CDS | 30.0% | |
| ! | GACAATTCAAGTTCAAAACT+TGG | - | chr1_3:28577640-28577659 | None:intergenic | 30.0% |
| GTATCCTCTATTTCAATTCA+AGG | - | chr1_3:28577837-28577856 | None:intergenic | 30.0% | |
| ATAGTTATGGTGAATGAAAG+TGG | - | chr1_3:28578075-28578094 | None:intergenic | 30.0% | |
| AAGTAAGAAGGAAAAACCTT+TGG | - | chr1_3:28578106-28578125 | None:intergenic | 30.0% | |
| TTGTCATTGTTCAAAGGAAT+TGG | - | chr1_3:28578197-28578216 | None:intergenic | 30.0% | |
| AATTCCTTTGAACAATGACA+AGG | + | chr1_3:28578196-28578215 | Msa0112920:intron | 30.0% | |
| ATAACCTTGTCATTGTTCAA+AGG | - | chr1_3:28578203-28578222 | None:intergenic | 30.0% | |
| AAATTTGTGGAGTTGACAAA+TGG | + | chr1_3:28578916-28578935 | Msa0112920:CDS | 30.0% | |
| AATTTGTGGAGTTGACAAAT+GGG | + | chr1_3:28578917-28578936 | Msa0112920:CDS | 30.0% | |
| ATTATCAGTCAACAGGATTT+AGG | + | chr1_3:28578968-28578987 | Msa0112920:CDS | 30.0% | |
| GAAGATTGCAAATTGAAGAT+TGG | + | chr1_3:28579018-28579037 | Msa0112920:CDS | 30.0% | |
| TCGAAATCATGAACTACATA+AGG | + | chr1_3:28576810-28576829 | Msa0112920:CDS | 30.0% | |
| CGAAATCATGAACTACATAA+GGG | + | chr1_3:28576811-28576830 | Msa0112920:CDS | 30.0% | |
| ATAAGGATATGTAATGCAAC+AGG | - | chr1_3:28576989-28577008 | None:intergenic | 30.0% | |
| AGTCTAAGAATTACTGGATT+TGG | - | chr1_3:28577080-28577099 | None:intergenic | 30.0% | |
| TTTGGAAGTCTAAGAATTAC+TGG | - | chr1_3:28577086-28577105 | None:intergenic | 30.0% | |
| GTAATTCTTAGACTTCCAAA+TGG | + | chr1_3:28577086-28577105 | Msa0112920:CDS | 30.0% | |
| ! | GTGCTCAAAAGGAAATATTT+TGG | + | chr1_3:28577108-28577127 | Msa0112920:CDS | 30.0% |
| !! | TCAAAAGGAAATATTTTGGG+TGG | + | chr1_3:28577112-28577131 | Msa0112920:CDS | 30.0% |
| ! | TTTGCAAAGTCTCTAAAAGA+TGG | + | chr1_3:28577176-28577195 | Msa0112920:CDS | 30.0% |
| !!! | GATTTTTGGTCACAATACAT+TGG | + | chr1_3:28577247-28577266 | Msa0112920:CDS | 30.0% |
| TTCATTGATGAAAGTTGTGA+AGG | + | chr1_3:28577293-28577312 | Msa0112920:CDS | 30.0% | |
| ACATCTCAAAGGAGAAAAAA+CGG | + | chr1_3:28577377-28577396 | Msa0112920:CDS | 30.0% | |
| ! | GACAATTCAAGTTCAAAACT+TGG | - | chr1_3:28577640-28577659 | None:intergenic | 30.0% |
| GTATCCTCTATTTCAATTCA+AGG | - | chr1_3:28577837-28577856 | None:intergenic | 30.0% | |
| ATAGTTATGGTGAATGAAAG+TGG | - | chr1_3:28578075-28578094 | None:intergenic | 30.0% | |
| AAGTAAGAAGGAAAAACCTT+TGG | - | chr1_3:28578106-28578125 | None:intergenic | 30.0% | |
| TTGTCATTGTTCAAAGGAAT+TGG | - | chr1_3:28578197-28578216 | None:intergenic | 30.0% | |
| AATTCCTTTGAACAATGACA+AGG | + | chr1_3:28578196-28578215 | Msa0112920:intron | 30.0% | |
| ATAACCTTGTCATTGTTCAA+AGG | - | chr1_3:28578203-28578222 | None:intergenic | 30.0% | |
| AAATTTGTGGAGTTGACAAA+TGG | + | chr1_3:28578916-28578935 | Msa0112920:CDS | 30.0% | |
| AATTTGTGGAGTTGACAAAT+GGG | + | chr1_3:28578917-28578936 | Msa0112920:CDS | 30.0% | |
| ATTATCAGTCAACAGGATTT+AGG | + | chr1_3:28578968-28578987 | Msa0112920:CDS | 30.0% | |
| GAAGATTGCAAATTGAAGAT+TGG | + | chr1_3:28579018-28579037 | Msa0112920:CDS | 30.0% | |
| ACTATCTTCAAGAACTCTTC+TGG | - | chr1_3:28576790-28576809 | None:intergenic | 35.0% | |
| ATGATTATTGTCTGTTGCAG+AGG | + | chr1_3:28577015-28577034 | Msa0112920:intron | 35.0% | |
| TGATTATTGTCTGTTGCAGA+GGG | + | chr1_3:28577016-28577035 | Msa0112920:intron | 35.0% | |
| ! | ATTTCCTTTTGAGCACCATT+TGG | - | chr1_3:28577104-28577123 | None:intergenic | 35.0% |
| ! | TTTAGGTGGCCCATATTTTA+AGG | + | chr1_3:28577220-28577239 | Msa0112920:CDS | 35.0% |
| GACAATGTTACTAATAGTGC+TGG | + | chr1_3:28577353-28577372 | Msa0112920:CDS | 35.0% | |
| ACTTACCAAAGTATAGCCAT+GGG | - | chr1_3:28577674-28577693 | None:intergenic | 35.0% | |
| TCATCTGCAAGCATTAGATT+TGG | + | chr1_3:28577901-28577920 | Msa0112920:CDS | 35.0% | |
| AACATCACCTTCACTTTCAT+AGG | - | chr1_3:28577937-28577956 | None:intergenic | 35.0% | |
| !! | TTTGGCTTGGGTAATAGTTA+TGG | - | chr1_3:28578088-28578107 | None:intergenic | 35.0% |
| ATAACTATTACCCAAGCCAA+AGG | + | chr1_3:28578087-28578106 | Msa0112920:CDS | 35.0% | |
| GAACAATGACAAGGTTATGA+AGG | + | chr1_3:28578205-28578224 | Msa0112920:intron | 35.0% | |
| AGTACATACTCGAAAGAACA+TGG | - | chr1_3:28578297-28578316 | None:intergenic | 35.0% | |
| ! | AAGAAGCATAAAGAGCTTCA+TGG | + | chr1_3:28578892-28578911 | Msa0112920:CDS | 35.0% |
| AGAGCTTCATGGAAAATTTG+TGG | + | chr1_3:28578903-28578922 | Msa0112920:CDS | 35.0% | |
| ATTTGTGGAGTTGACAAATG+GGG | + | chr1_3:28578918-28578937 | Msa0112920:CDS | 35.0% | |
| GTGACATATTATCAGTCAAC+AGG | + | chr1_3:28578961-28578980 | Msa0112920:CDS | 35.0% | |
| ! | TGCAGGTTGGCAAAAATTTA+AGG | + | chr1_3:28578996-28579015 | Msa0112920:CDS | 35.0% |
| ACTATCTTCAAGAACTCTTC+TGG | - | chr1_3:28576790-28576809 | None:intergenic | 35.0% | |
| ATGATTATTGTCTGTTGCAG+AGG | + | chr1_3:28577015-28577034 | Msa0112920:intron | 35.0% | |
| TGATTATTGTCTGTTGCAGA+GGG | + | chr1_3:28577016-28577035 | Msa0112920:intron | 35.0% | |
| ! | ATTTCCTTTTGAGCACCATT+TGG | - | chr1_3:28577104-28577123 | None:intergenic | 35.0% |
| ! | TTTAGGTGGCCCATATTTTA+AGG | + | chr1_3:28577220-28577239 | Msa0112920:CDS | 35.0% |
| GACAATGTTACTAATAGTGC+TGG | + | chr1_3:28577353-28577372 | Msa0112920:CDS | 35.0% | |
| ACTTACCAAAGTATAGCCAT+GGG | - | chr1_3:28577674-28577693 | None:intergenic | 35.0% | |
| TCATCTGCAAGCATTAGATT+TGG | + | chr1_3:28577901-28577920 | Msa0112920:CDS | 35.0% | |
| AACATCACCTTCACTTTCAT+AGG | - | chr1_3:28577937-28577956 | None:intergenic | 35.0% | |
| !! | TTTGGCTTGGGTAATAGTTA+TGG | - | chr1_3:28578088-28578107 | None:intergenic | 35.0% |
| ATAACTATTACCCAAGCCAA+AGG | + | chr1_3:28578087-28578106 | Msa0112920:CDS | 35.0% | |
| GAACAATGACAAGGTTATGA+AGG | + | chr1_3:28578205-28578224 | Msa0112920:intron | 35.0% | |
| AGTACATACTCGAAAGAACA+TGG | - | chr1_3:28578297-28578316 | None:intergenic | 35.0% | |
| ! | AAGAAGCATAAAGAGCTTCA+TGG | + | chr1_3:28578892-28578911 | Msa0112920:CDS | 35.0% |
| AGAGCTTCATGGAAAATTTG+TGG | + | chr1_3:28578903-28578922 | Msa0112920:CDS | 35.0% | |
| ATTTGTGGAGTTGACAAATG+GGG | + | chr1_3:28578918-28578937 | Msa0112920:CDS | 35.0% | |
| GTGACATATTATCAGTCAAC+AGG | + | chr1_3:28578961-28578980 | Msa0112920:CDS | 35.0% | |
| ! | TGCAGGTTGGCAAAAATTTA+AGG | + | chr1_3:28578996-28579015 | Msa0112920:CDS | 35.0% |
| ACTTCCAAATGGTGCTCAAA+AGG | + | chr1_3:28577097-28577116 | Msa0112920:CDS | 40.0% | |
| TACTTTGCAGGTAGTAAGAG+AGG | + | chr1_3:28577520-28577539 | Msa0112920:intron | 40.0% | |
| ! | GAGAGGAGGTATGATTAAGA+AGG | + | chr1_3:28577537-28577556 | Msa0112920:CDS | 40.0% |
| GACTTACCAAAGTATAGCCA+TGG | - | chr1_3:28577675-28577694 | None:intergenic | 40.0% | |
| TACGCTCTTGAAAAGTCACT+TGG | - | chr1_3:28577859-28577878 | None:intergenic | 40.0% | |
| GAACATGCCTATGAAAGTGA+AGG | + | chr1_3:28577927-28577946 | Msa0112920:CDS | 40.0% | |
| ! | GAAGGAAAAACCTTTGGCTT+GGG | - | chr1_3:28578100-28578119 | None:intergenic | 40.0% |
| AGAAGGAAAAACCTTTGGCT+TGG | - | chr1_3:28578101-28578120 | None:intergenic | 40.0% | |
| GATGATATTGGGAAGAGAAG+AGG | + | chr1_3:28578247-28578266 | Msa0112920:CDS | 40.0% | |
| CATTGTGTTTCAGCAGACTT+AGG | + | chr1_3:28578711-28578730 | Msa0112920:intron | 40.0% | |
| ACACGAATCTCGATTGTGAT+CGG | - | chr1_3:28578753-28578772 | None:intergenic | 40.0% | |
| TCGTGTGAATTCTACTTACC+CGG | + | chr1_3:28578767-28578786 | Msa0112920:CDS | 40.0% | |
| TTTGTGGAGTTGACAAATGG+GGG | + | chr1_3:28578919-28578938 | Msa0112920:CDS | 40.0% | |
| TGACAAATGGGGGAAAATCA+TGG | + | chr1_3:28578929-28578948 | Msa0112920:CDS | 40.0% | |
| AAATGGGGGAAAATCATGGT+TGG | + | chr1_3:28578933-28578952 | Msa0112920:CDS | 40.0% | |
| ! | ACAGGATTTAGGTTCTATGC+AGG | + | chr1_3:28578979-28578998 | Msa0112920:CDS | 40.0% |
| ! | GATTTAGGTTCTATGCAGGT+TGG | + | chr1_3:28578983-28579002 | Msa0112920:CDS | 40.0% |
| ACTTCCAAATGGTGCTCAAA+AGG | + | chr1_3:28577097-28577116 | Msa0112920:CDS | 40.0% | |
| TACTTTGCAGGTAGTAAGAG+AGG | + | chr1_3:28577520-28577539 | Msa0112920:intron | 40.0% | |
| ! | GAGAGGAGGTATGATTAAGA+AGG | + | chr1_3:28577537-28577556 | Msa0112920:CDS | 40.0% |
| GACTTACCAAAGTATAGCCA+TGG | - | chr1_3:28577675-28577694 | None:intergenic | 40.0% | |
| TACGCTCTTGAAAAGTCACT+TGG | - | chr1_3:28577859-28577878 | None:intergenic | 40.0% | |
| GAACATGCCTATGAAAGTGA+AGG | + | chr1_3:28577927-28577946 | Msa0112920:CDS | 40.0% | |
| ! | GAAGGAAAAACCTTTGGCTT+GGG | - | chr1_3:28578100-28578119 | None:intergenic | 40.0% |
| AGAAGGAAAAACCTTTGGCT+TGG | - | chr1_3:28578101-28578120 | None:intergenic | 40.0% | |
| GATGATATTGGGAAGAGAAG+AGG | + | chr1_3:28578247-28578266 | Msa0112920:CDS | 40.0% | |
| CATTGTGTTTCAGCAGACTT+AGG | + | chr1_3:28578711-28578730 | Msa0112920:intron | 40.0% | |
| ACACGAATCTCGATTGTGAT+CGG | - | chr1_3:28578753-28578772 | None:intergenic | 40.0% | |
| TCGTGTGAATTCTACTTACC+CGG | + | chr1_3:28578767-28578786 | Msa0112920:CDS | 40.0% | |
| TTTGTGGAGTTGACAAATGG+GGG | + | chr1_3:28578919-28578938 | Msa0112920:CDS | 40.0% | |
| TGACAAATGGGGGAAAATCA+TGG | + | chr1_3:28578929-28578948 | Msa0112920:CDS | 40.0% | |
| AAATGGGGGAAAATCATGGT+TGG | + | chr1_3:28578933-28578952 | Msa0112920:CDS | 40.0% | |
| ! | ACAGGATTTAGGTTCTATGC+AGG | + | chr1_3:28578979-28578998 | Msa0112920:CDS | 40.0% |
| ! | GATTTAGGTTCTATGCAGGT+TGG | + | chr1_3:28578983-28579002 | Msa0112920:CDS | 40.0% |
| GAGGGTTCCCAAGAAATTTG+TGG | + | chr1_3:28577034-28577053 | Msa0112920:intron | 45.0% | |
| !! | ATATTTTGGGTGGAGCGTGA+AGG | + | chr1_3:28577122-28577141 | Msa0112920:CDS | 45.0% |
| TGGAGCGTGAAGGTGATATT+TGG | + | chr1_3:28577132-28577151 | Msa0112920:CDS | 45.0% | |
| !! | ATAGTGCTGGCACATCTCAA+AGG | + | chr1_3:28577366-28577385 | Msa0112920:CDS | 45.0% |
| TTTGCAGGTAGTAAGAGAGG+AGG | + | chr1_3:28577523-28577542 | Msa0112920:intron | 45.0% | |
| TTGTCACAATCTTACGCCCA+TGG | + | chr1_3:28577655-28577674 | Msa0112920:CDS | 45.0% | |
| TTACGCCCATGGCTATACTT+TGG | + | chr1_3:28577666-28577685 | Msa0112920:CDS | 45.0% | |
| TGCTTGCAGATGACCCTTTA+AGG | - | chr1_3:28577894-28577913 | None:intergenic | 45.0% | |
| AGAACTTGCATTGTGACCAG+TGG | + | chr1_3:28577976-28577995 | Msa0112920:CDS | 45.0% | |
| !! | GAGGCATTGAAGGAAGTTCA+AGG | + | chr1_3:28578266-28578285 | Msa0112920:CDS | 45.0% |
| TGTGTTTCAGCAGACTTAGG+TGG | + | chr1_3:28578714-28578733 | Msa0112920:intron | 45.0% | |
| GTGAATTCTACTTACCCGGT+AGG | + | chr1_3:28578771-28578790 | Msa0112920:intron | 45.0% | |
| GAGGGTTCCCAAGAAATTTG+TGG | + | chr1_3:28577034-28577053 | Msa0112920:intron | 45.0% | |
| !! | ATATTTTGGGTGGAGCGTGA+AGG | + | chr1_3:28577122-28577141 | Msa0112920:CDS | 45.0% |
| TGGAGCGTGAAGGTGATATT+TGG | + | chr1_3:28577132-28577151 | Msa0112920:CDS | 45.0% | |
| !! | ATAGTGCTGGCACATCTCAA+AGG | + | chr1_3:28577366-28577385 | Msa0112920:CDS | 45.0% |
| TTTGCAGGTAGTAAGAGAGG+AGG | + | chr1_3:28577523-28577542 | Msa0112920:intron | 45.0% | |
| TTGTCACAATCTTACGCCCA+TGG | + | chr1_3:28577655-28577674 | Msa0112920:CDS | 45.0% | |
| TTACGCCCATGGCTATACTT+TGG | + | chr1_3:28577666-28577685 | Msa0112920:CDS | 45.0% | |
| TGCTTGCAGATGACCCTTTA+AGG | - | chr1_3:28577894-28577913 | None:intergenic | 45.0% | |
| AGAACTTGCATTGTGACCAG+TGG | + | chr1_3:28577976-28577995 | Msa0112920:CDS | 45.0% | |
| !! | GAGGCATTGAAGGAAGTTCA+AGG | + | chr1_3:28578266-28578285 | Msa0112920:CDS | 45.0% |
| TGTGTTTCAGCAGACTTAGG+TGG | + | chr1_3:28578714-28578733 | Msa0112920:intron | 45.0% | |
| GTGAATTCTACTTACCCGGT+AGG | + | chr1_3:28578771-28578790 | Msa0112920:intron | 45.0% | |
| !! | AAATAATTTATAATTTAAGA+GGG | - | chr1_3:28578511-28578530 | None:intergenic | 5.0% |
| !! | TAAATAATTTATAATTTAAG+AGG | - | chr1_3:28578512-28578531 | None:intergenic | 5.0% |
| !! | AAATAATTTATAATTTAAGA+GGG | - | chr1_3:28578511-28578530 | None:intergenic | 5.0% |
| !! | TAAATAATTTATAATTTAAG+AGG | - | chr1_3:28578512-28578531 | None:intergenic | 5.0% |
| CTTGCATTGTGACCAGTGGT+TGG | + | chr1_3:28577980-28577999 | Msa0112920:CDS | 50.0% | |
| !! | GGGAAGAGAAGAGGCATTGA+AGG | + | chr1_3:28578256-28578275 | Msa0112920:CDS | 50.0% |
| CTTGCATTGTGACCAGTGGT+TGG | + | chr1_3:28577980-28577999 | Msa0112920:CDS | 50.0% | |
| !! | GGGAAGAGAAGAGGCATTGA+AGG | + | chr1_3:28578256-28578275 | Msa0112920:CDS | 50.0% |
| GGCAAATGGCTTCCAACCAC+TGG | - | chr1_3:28577995-28578014 | None:intergenic | 55.0% | |
| GGCAAATGGCTTCCAACCAC+TGG | - | chr1_3:28577995-28578014 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 28576772 | 28579119 | 28576772 | ID=Msa0112920;Name=Msa0112920 |
| chr1_3 | mRNA | 28576772 | 28579119 | 28576772 | ID=Msa0112920-mRNA-1;Parent=Msa0112920;Name=Msa0112920-mRNA-1;_AED=0.11;_eAED=0.12;_QI=0|0|0|1|1|1|7|0|428 |
| chr1_3 | exon | 28576772 | 28576840 | 28576772 | ID=Msa0112920-mRNA-1:exon:9376;Parent=Msa0112920-mRNA-1 |
| chr1_3 | exon | 28577035 | 28577431 | 28577035 | ID=Msa0112920-mRNA-1:exon:9377;Parent=Msa0112920-mRNA-1 |
| chr1_3 | exon | 28577530 | 28577687 | 28577530 | ID=Msa0112920-mRNA-1:exon:9378;Parent=Msa0112920-mRNA-1 |
| chr1_3 | exon | 28577850 | 28578108 | 28577850 | ID=Msa0112920-mRNA-1:exon:9379;Parent=Msa0112920-mRNA-1 |
| chr1_3 | exon | 28578218 | 28578307 | 28578218 | ID=Msa0112920-mRNA-1:exon:9380;Parent=Msa0112920-mRNA-1 |
| chr1_3 | exon | 28578724 | 28578788 | 28578724 | ID=Msa0112920-mRNA-1:exon:9381;Parent=Msa0112920-mRNA-1 |
| chr1_3 | exon | 28578871 | 28579119 | 28578871 | ID=Msa0112920-mRNA-1:exon:9382;Parent=Msa0112920-mRNA-1 |
| chr1_3 | CDS | 28576772 | 28576840 | 28576772 | ID=Msa0112920-mRNA-1:cds;Parent=Msa0112920-mRNA-1 |
| chr1_3 | CDS | 28577035 | 28577431 | 28577035 | ID=Msa0112920-mRNA-1:cds;Parent=Msa0112920-mRNA-1 |
| chr1_3 | CDS | 28577530 | 28577687 | 28577530 | ID=Msa0112920-mRNA-1:cds;Parent=Msa0112920-mRNA-1 |
| chr1_3 | CDS | 28577850 | 28578108 | 28577850 | ID=Msa0112920-mRNA-1:cds;Parent=Msa0112920-mRNA-1 |
| chr1_3 | CDS | 28578218 | 28578307 | 28578218 | ID=Msa0112920-mRNA-1:cds;Parent=Msa0112920-mRNA-1 |
| chr1_3 | CDS | 28578724 | 28578788 | 28578724 | ID=Msa0112920-mRNA-1:cds;Parent=Msa0112920-mRNA-1 |
| chr1_3 | CDS | 28578871 | 28579119 | 28578871 | ID=Msa0112920-mRNA-1:cds;Parent=Msa0112920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
