Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112930 | RHN78227.1 | 85.897 | 312 | 29 | 4 | 1 | 298 | 1 | 311 | 1.35e-171 | 489 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112930 | sp|Q84R27|Y3896_ARATH | 34.653 | 101 | 60 | 2 | 11 | 106 | 30 | 129 | 2.96e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112930 | A0A396JU70 | 85.897 | 312 | 29 | 4 | 1 | 298 | 1 | 311 | 6.47e-172 | 489 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0112930 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112930 | MtrunA17_Chr1g0163221 | 85.897 | 312 | 29 | 4 | 1 | 298 | 1 | 311 | 1.25e-175 | 489 |
| Msa0112930 | MtrunA17_Chr4g0067431 | 60.976 | 328 | 86 | 10 | 1 | 290 | 1 | 324 | 2.61e-126 | 363 |
| Msa0112930 | MtrunA17_Chr6g0467351 | 58.667 | 225 | 64 | 4 | 1 | 202 | 1 | 219 | 3.93e-84 | 253 |
| Msa0112930 | MtrunA17_Chr1g0163061 | 49.811 | 265 | 64 | 5 | 1 | 196 | 1 | 265 | 1.40e-60 | 194 |
| Msa0112930 | MtrunA17_Chr1g0163131 | 31.879 | 298 | 166 | 12 | 3 | 270 | 10 | 300 | 7.94e-28 | 109 |
| Msa0112930 | MtrunA17_Chr3g0103181 | 28.125 | 288 | 170 | 11 | 9 | 277 | 10 | 279 | 4.85e-24 | 99.0 |
| Msa0112930 | MtrunA17_Chr6g0467361 | 63.750 | 80 | 25 | 3 | 209 | 285 | 16 | 94 | 2.17e-23 | 92.0 |
| Msa0112930 | MtrunA17_Chr1g0208771 | 26.897 | 290 | 170 | 11 | 27 | 282 | 13 | 294 | 7.76e-23 | 97.8 |
| Msa0112930 | MtrunA17_Chr3g0131891 | 27.586 | 290 | 185 | 8 | 9 | 277 | 17 | 302 | 1.77e-22 | 95.5 |
| Msa0112930 | MtrunA17_Chr1g0163071 | 27.010 | 311 | 167 | 11 | 27 | 290 | 2 | 299 | 3.67e-21 | 91.7 |
| Msa0112930 | MtrunA17_Chr8g0390841 | 25.806 | 310 | 191 | 11 | 9 | 286 | 37 | 339 | 3.68e-21 | 93.6 |
| Msa0112930 | MtrunA17_Chr1g0163181 | 27.397 | 292 | 173 | 13 | 15 | 276 | 9 | 291 | 8.40e-21 | 92.0 |
| Msa0112930 | MtrunA17_Chr1g0163261 | 27.273 | 286 | 175 | 11 | 11 | 276 | 9 | 281 | 2.32e-20 | 89.4 |
| Msa0112930 | MtrunA17_Chr1g0163231 | 27.622 | 286 | 149 | 10 | 11 | 265 | 9 | 267 | 9.21e-20 | 87.4 |
| Msa0112930 | MtrunA17_Chr1g0163251 | 27.723 | 303 | 188 | 12 | 20 | 302 | 14 | 305 | 1.21e-19 | 88.2 |
| Msa0112930 | MtrunA17_Chr7g0233561 | 25.424 | 295 | 168 | 9 | 9 | 263 | 16 | 298 | 1.27e-19 | 87.4 |
| Msa0112930 | MtrunA17_Chr3g0103171 | 27.206 | 272 | 165 | 10 | 27 | 277 | 6 | 265 | 5.00e-19 | 84.7 |
| Msa0112930 | MtrunA17_Chr3g0103191 | 27.917 | 240 | 144 | 10 | 9 | 232 | 10 | 236 | 6.01e-19 | 84.3 |
| Msa0112930 | MtrunA17_Chr1g0163101 | 33.333 | 141 | 74 | 5 | 6 | 130 | 12 | 148 | 4.10e-18 | 80.5 |
| Msa0112930 | MtrunA17_Chr7g0233571 | 38.261 | 115 | 65 | 2 | 9 | 118 | 8 | 121 | 9.50e-18 | 80.5 |
| Msa0112930 | MtrunA17_Chr7g0233541 | 26.692 | 266 | 165 | 6 | 27 | 263 | 2 | 266 | 1.85e-17 | 80.9 |
| Msa0112930 | MtrunA17_Chr1g0163201 | 27.758 | 281 | 160 | 11 | 27 | 271 | 19 | 292 | 2.55e-17 | 81.6 |
| Msa0112930 | MtrunA17_Chr3g0103151 | 36.000 | 150 | 79 | 8 | 9 | 144 | 10 | 156 | 4.33e-17 | 77.0 |
| Msa0112930 | MtrunA17_Chr5g0419201 | 34.731 | 167 | 81 | 7 | 11 | 150 | 16 | 181 | 5.98e-17 | 77.4 |
| Msa0112930 | MtrunA17_Chr1g0163121 | 34.884 | 129 | 65 | 5 | 25 | 138 | 9 | 133 | 4.11e-16 | 73.9 |
| Msa0112930 | MtrunA17_Chr7g0233521 | 26.718 | 262 | 153 | 8 | 27 | 263 | 2 | 249 | 4.51e-16 | 76.6 |
| Msa0112930 | MtrunA17_Chr1g0154161 | 25.088 | 283 | 169 | 11 | 9 | 263 | 28 | 295 | 9.25e-16 | 76.6 |
| Msa0112930 | MtrunA17_Chr6g0476181 | 39.316 | 117 | 58 | 6 | 27 | 135 | 2 | 113 | 3.36e-15 | 72.0 |
| Msa0112930 | MtrunA17_Chr1g0163081 | 30.872 | 149 | 75 | 6 | 27 | 160 | 6 | 141 | 8.12e-15 | 70.5 |
| Msa0112930 | MtrunA17_Chr1g0171611 | 23.704 | 270 | 168 | 7 | 11 | 265 | 9 | 255 | 1.01e-14 | 73.2 |
| Msa0112930 | MtrunA17_Chr7g0233531 | 25.581 | 258 | 161 | 8 | 27 | 263 | 2 | 249 | 2.43e-14 | 72.0 |
| Msa0112930 | MtrunA17_Chr3g0077411 | 25.436 | 287 | 146 | 11 | 2 | 275 | 16 | 247 | 2.72e-13 | 70.1 |
| Msa0112930 | MtrunA17_Chr3g0077411 | 25.795 | 283 | 174 | 12 | 9 | 279 | 260 | 518 | 1.95e-11 | 64.3 |
| Msa0112930 | MtrunA17_Chr1g0162161 | 34.014 | 147 | 78 | 7 | 27 | 160 | 4 | 144 | 6.26e-13 | 65.5 |
| Msa0112930 | MtrunA17_Chr1g0163191 | 38.235 | 102 | 55 | 3 | 20 | 116 | 14 | 112 | 1.67e-12 | 64.3 |
| Msa0112930 | MtrunA17_Chr3g0103201 | 27.706 | 231 | 130 | 11 | 70 | 277 | 4 | 220 | 7.50e-12 | 63.9 |
| Msa0112930 | MtrunA17_Chr3g0077461 | 29.775 | 178 | 107 | 5 | 10 | 170 | 236 | 412 | 1.15e-11 | 65.1 |
| Msa0112930 | MtrunA17_Chr1g0154131 | 25.795 | 283 | 174 | 9 | 9 | 263 | 182 | 456 | 1.49e-11 | 64.7 |
| Msa0112930 | MtrunA17_Chr1g0163241 | 32.143 | 112 | 68 | 3 | 27 | 133 | 23 | 131 | 1.50e-11 | 62.0 |
| Msa0112930 | MtrunA17_Chr3g0077451 | 24.907 | 269 | 141 | 11 | 25 | 277 | 10 | 233 | 3.74e-11 | 62.0 |
| Msa0112930 | MtrunA17_Chr1g0154151 | 24.648 | 284 | 167 | 9 | 26 | 263 | 19 | 301 | 4.97e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112930 | AT3G18960.2 | 34.653 | 101 | 60 | 2 | 11 | 106 | 30 | 129 | 2.96e-13 | 67.8 |
| Msa0112930 | AT3G18960.1 | 34.653 | 101 | 60 | 2 | 11 | 106 | 30 | 129 | 3.01e-13 | 67.8 |
| Msa0112930 | AT1G49475.1 | 35.135 | 111 | 65 | 3 | 11 | 116 | 34 | 142 | 2.51e-12 | 65.1 |
| Msa0112930 | AT4G01580.1 | 32.673 | 101 | 62 | 2 | 11 | 106 | 30 | 129 | 1.20e-11 | 63.2 |
Find 34 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGGAAACCTTAGAGTAAT+TGG | 0.167691 | 1_3:-28596619 | None:intergenic |
| ATTTATCTTTGTCAACAAAA+AGG | 0.196489 | 1_3:-28597571 | None:intergenic |
| GAAGAGAATAATTTGAAATT+TGG | 0.198679 | 1_3:+28597656 | Msa0112930:CDS |
| TATAATTTACCTTCAAAATA+AGG | 0.255936 | 1_3:-28597767 | None:intergenic |
| CTTCGTCATCACGGGGTAAA+AGG | 0.257683 | 1_3:+28596890 | Msa0112930:CDS |
| AAGTAGTTGTGATGATATTA+AGG | 0.299219 | 1_3:+28597107 | Msa0112930:CDS |
| TTCTTACAAACTTTCATAGA+TGG | 0.310675 | 1_3:-28596928 | None:intergenic |
| GTCTTTAATGTGATTGTATT+CGG | 0.330391 | 1_3:+28596778 | Msa0112930:CDS |
| TAACAAACCCAATTACTCTA+AGG | 0.340216 | 1_3:+28596611 | Msa0112930:CDS |
| ATTTCAAATTATTCTCTTCA+CGG | 0.368199 | 1_3:-28597652 | None:intergenic |
| GAGAAAATAACAACTTGAAA+TGG | 0.395512 | 1_3:-28597722 | None:intergenic |
| TTTCTCTTTGGAAAAGGACT+TGG | 0.399841 | 1_3:+28597739 | Msa0112930:CDS |
| TGTGTCTTAACAAATTCATT+TGG | 0.404885 | 1_3:-28597517 | None:intergenic |
| CTTCCCTAGTTTCTCTTGAC+GGG | 0.422598 | 1_3:-28596825 | None:intergenic |
| TCTTCCCTAGTTTCTCTTGA+CGG | 0.433773 | 1_3:-28596826 | None:intergenic |
| TTGGAAACCTTAGAGTAATT+GGG | 0.442652 | 1_3:-28596618 | None:intergenic |
| TGAGAATCCTTCGTCATCAC+GGG | 0.459175 | 1_3:+28596882 | Msa0112930:CDS |
| TACTCTAAGGTTTCCAAACA+TGG | 0.467994 | 1_3:+28596624 | Msa0112930:CDS |
| TATATTTGATTAGTGTCCAT+CGG | 0.520813 | 1_3:+28597786 | Msa0112930:CDS |
| TTGAGAATCCTTCGTCATCA+CGG | 0.526374 | 1_3:+28596881 | Msa0112930:CDS |
| GTTAAGACACATGGACATGA+TGG | 0.530876 | 1_3:+28597529 | Msa0112930:CDS |
| AATACCCGTCAAGAGAAACT+AGG | 0.533719 | 1_3:+28596821 | Msa0112930:CDS |
| TTTGTGAAAAGGTATTGGAA+AGG | 0.553882 | 1_3:+28596586 | Msa0112930:CDS |
| CATATTAAATGAATTTCCGA+TGG | 0.570683 | 1_3:-28597802 | None:intergenic |
| AATCTGCACTAACTTGTGGT+TGG | 0.573287 | 1_3:+28597621 | Msa0112930:CDS |
| ATACCCGTCAAGAGAAACTA+GGG | 0.582374 | 1_3:+28596822 | Msa0112930:CDS |
| AAACAATCTGCACTAACTTG+TGG | 0.589005 | 1_3:+28597617 | Msa0112930:CDS |
| AATGAATTTGTTAAGACACA+TGG | 0.593241 | 1_3:+28597520 | Msa0112930:CDS |
| ATGTCTTCTCAAGAGAGTAA+TGG | 0.609709 | 1_3:+28596156 | Msa0112930:CDS |
| ATTACTCTCTTGAGAAGACA+TGG | 0.618980 | 1_3:-28596154 | None:intergenic |
| AGACACATGGACATGATGGA+AGG | 0.630448 | 1_3:+28597533 | Msa0112930:CDS |
| TCTAAGGTTTCCAAACATGG+TGG | 0.644869 | 1_3:+28596627 | Msa0112930:CDS |
| AAGCGTGAGCATGTGAACAA+TGG | 0.705898 | 1_3:+28596985 | Msa0112930:CDS |
| GAGAATCCTTCGTCATCACG+GGG | 0.717191 | 1_3:+28596883 | Msa0112930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTGCTACTAATTTTTTT+TGG | + | chr1_3:28597061-28597080 | Msa0112930:intron | 15.0% |
| !! | TATAATTTACCTTCAAAATA+AGG | - | chr1_3:28597770-28597789 | None:intergenic | 15.0% |
| !!! | TTTTTGCTACTAATTTTTTT+TGG | + | chr1_3:28597061-28597080 | Msa0112930:intron | 15.0% |
| !! | TATAATTTACCTTCAAAATA+AGG | - | chr1_3:28597770-28597789 | None:intergenic | 15.0% |
| !! | TTACATATTGTGAAAAATCA+AGG | - | chr1_3:28596257-28596276 | None:intergenic | 20.0% |
| !! | TAAATATGCATTGCAAAATT+TGG | + | chr1_3:28596274-28596293 | Msa0112930:intron | 20.0% |
| !! | AATAATGATTGTTCGAATAT+CGG | + | chr1_3:28596414-28596433 | Msa0112930:intron | 20.0% |
| !!! | TTTGAATGAATCACAATTTT+TGG | + | chr1_3:28596732-28596751 | Msa0112930:CDS | 20.0% |
| !!! | TGAATTCTTATTTTTTTAGC+AGG | + | chr1_3:28597084-28597103 | Msa0112930:intron | 20.0% |
| !!! | CTTTAAAAATACCTACATAA+TGG | + | chr1_3:28597365-28597384 | Msa0112930:intron | 20.0% |
| !! | AACTATATGTGAGTATTTAT+AGG | + | chr1_3:28597489-28597508 | Msa0112930:intron | 20.0% |
| !! | TTTATCTTTGTCAACAAAAA+GGG | - | chr1_3:28597573-28597592 | None:intergenic | 20.0% |
| !! | ATTTATCTTTGTCAACAAAA+AGG | - | chr1_3:28597574-28597593 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGACAAAGATAAA+TGG | + | chr1_3:28597573-28597592 | Msa0112930:CDS | 20.0% |
| !! | ATTTCAAATTATTCTCTTCA+CGG | - | chr1_3:28597655-28597674 | None:intergenic | 20.0% |
| !!! | GAAGAGAATAATTTGAAATT+TGG | + | chr1_3:28597656-28597675 | Msa0112930:CDS | 20.0% |
| !! | TTACATATTGTGAAAAATCA+AGG | - | chr1_3:28596257-28596276 | None:intergenic | 20.0% |
| !! | TAAATATGCATTGCAAAATT+TGG | + | chr1_3:28596274-28596293 | Msa0112930:intron | 20.0% |
| !! | AATAATGATTGTTCGAATAT+CGG | + | chr1_3:28596414-28596433 | Msa0112930:intron | 20.0% |
| !!! | TTTGAATGAATCACAATTTT+TGG | + | chr1_3:28596732-28596751 | Msa0112930:CDS | 20.0% |
| !!! | TGAATTCTTATTTTTTTAGC+AGG | + | chr1_3:28597084-28597103 | Msa0112930:intron | 20.0% |
| !!! | CTTTAAAAATACCTACATAA+TGG | + | chr1_3:28597365-28597384 | Msa0112930:intron | 20.0% |
| !! | AACTATATGTGAGTATTTAT+AGG | + | chr1_3:28597489-28597508 | Msa0112930:intron | 20.0% |
| !! | TTTATCTTTGTCAACAAAAA+GGG | - | chr1_3:28597573-28597592 | None:intergenic | 20.0% |
| !! | ATTTATCTTTGTCAACAAAA+AGG | - | chr1_3:28597574-28597593 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGACAAAGATAAA+TGG | + | chr1_3:28597573-28597592 | Msa0112930:CDS | 20.0% |
| !! | ATTTCAAATTATTCTCTTCA+CGG | - | chr1_3:28597655-28597674 | None:intergenic | 20.0% |
| !!! | GAAGAGAATAATTTGAAATT+TGG | + | chr1_3:28597656-28597675 | Msa0112930:CDS | 20.0% |
| !! | TACCTTTTCACAAAACTTAT+GGG | - | chr1_3:28596580-28596599 | None:intergenic | 25.0% |
| !! | ATACCTTTTCACAAAACTTA+TGG | - | chr1_3:28596581-28596600 | None:intergenic | 25.0% |
| !!! | TAAGTTTTGTGAAAAGGTAT+TGG | + | chr1_3:28596581-28596600 | Msa0112930:CDS | 25.0% |
| !! | TATGAAGTTATGTTTTGCAA+TGG | + | chr1_3:28596682-28596701 | Msa0112930:CDS | 25.0% |
| ! | GTCTTTAATGTGATTGTATT+CGG | + | chr1_3:28596778-28596797 | Msa0112930:CDS | 25.0% |
| ! | TTCTTACAAACTTTCATAGA+TGG | - | chr1_3:28596931-28596950 | None:intergenic | 25.0% |
| ! | AAGTAGTTGTGATGATATTA+AGG | + | chr1_3:28597107-28597126 | Msa0112930:CDS | 25.0% |
| ! | CCAATTATGGTATACTAATT+TGG | - | chr1_3:28597318-28597337 | None:intergenic | 25.0% |
| ! | CCAAATTAGTATACCATAAT+TGG | + | chr1_3:28597315-28597334 | Msa0112930:intron | 25.0% |
| ! | AATATAGCAAAGTCCAATTA+TGG | - | chr1_3:28597331-28597350 | None:intergenic | 25.0% |
| ! | TGTGTCTTAACAAATTCATT+TGG | - | chr1_3:28597520-28597539 | None:intergenic | 25.0% |
| !!! | AATGAATTTGTTAAGACACA+TGG | + | chr1_3:28597520-28597539 | Msa0112930:CDS | 25.0% |
| ! | GAGAAAATAACAACTTGAAA+TGG | - | chr1_3:28597725-28597744 | None:intergenic | 25.0% |
| !!! | TCAAGTTGTTATTTTCTCTT+TGG | + | chr1_3:28597727-28597746 | Msa0112930:CDS | 25.0% |
| !!! | TGTTATTTTCTCTTTGGAAA+AGG | + | chr1_3:28597733-28597752 | Msa0112930:CDS | 25.0% |
| ! | TATATTTGATTAGTGTCCAT+CGG | + | chr1_3:28597786-28597805 | Msa0112930:CDS | 25.0% |
| !! | TACCTTTTCACAAAACTTAT+GGG | - | chr1_3:28596580-28596599 | None:intergenic | 25.0% |
| !! | ATACCTTTTCACAAAACTTA+TGG | - | chr1_3:28596581-28596600 | None:intergenic | 25.0% |
| !!! | TAAGTTTTGTGAAAAGGTAT+TGG | + | chr1_3:28596581-28596600 | Msa0112930:CDS | 25.0% |
| !! | TATGAAGTTATGTTTTGCAA+TGG | + | chr1_3:28596682-28596701 | Msa0112930:CDS | 25.0% |
| ! | GTCTTTAATGTGATTGTATT+CGG | + | chr1_3:28596778-28596797 | Msa0112930:CDS | 25.0% |
| ! | TTCTTACAAACTTTCATAGA+TGG | - | chr1_3:28596931-28596950 | None:intergenic | 25.0% |
| ! | AAGTAGTTGTGATGATATTA+AGG | + | chr1_3:28597107-28597126 | Msa0112930:CDS | 25.0% |
| ! | CCAATTATGGTATACTAATT+TGG | - | chr1_3:28597318-28597337 | None:intergenic | 25.0% |
| ! | CCAAATTAGTATACCATAAT+TGG | + | chr1_3:28597315-28597334 | Msa0112930:intron | 25.0% |
| ! | AATATAGCAAAGTCCAATTA+TGG | - | chr1_3:28597331-28597350 | None:intergenic | 25.0% |
| ! | TGTGTCTTAACAAATTCATT+TGG | - | chr1_3:28597520-28597539 | None:intergenic | 25.0% |
| !!! | AATGAATTTGTTAAGACACA+TGG | + | chr1_3:28597520-28597539 | Msa0112930:CDS | 25.0% |
| ! | GAGAAAATAACAACTTGAAA+TGG | - | chr1_3:28597725-28597744 | None:intergenic | 25.0% |
| !!! | TCAAGTTGTTATTTTCTCTT+TGG | + | chr1_3:28597727-28597746 | Msa0112930:CDS | 25.0% |
| !!! | TGTTATTTTCTCTTTGGAAA+AGG | + | chr1_3:28597733-28597752 | Msa0112930:CDS | 25.0% |
| ! | TATATTTGATTAGTGTCCAT+CGG | + | chr1_3:28597786-28597805 | Msa0112930:CDS | 25.0% |
| !!! | TAATGGTGTCCACTTTTTTA+AGG | + | chr1_3:28596173-28596192 | Msa0112930:CDS | 30.0% |
| GACGAATAACCTTAAAAAAG+TGG | - | chr1_3:28596185-28596204 | None:intergenic | 30.0% | |
| ! | TACCAGTTTTTCTTCTTGAA+GGG | - | chr1_3:28596214-28596233 | None:intergenic | 30.0% |
| ! | TTACCAGTTTTTCTTCTTGA+AGG | - | chr1_3:28596215-28596234 | None:intergenic | 30.0% |
| !! | TTTGTGAAAAGGTATTGGAA+AGG | + | chr1_3:28596586-28596605 | Msa0112930:CDS | 30.0% |
| TAACAAACCCAATTACTCTA+AGG | + | chr1_3:28596611-28596630 | Msa0112930:CDS | 30.0% | |
| TTGGAAACCTTAGAGTAATT+GGG | - | chr1_3:28596621-28596640 | None:intergenic | 30.0% | |
| TTTGGAAACCTTAGAGTAAT+TGG | - | chr1_3:28596622-28596641 | None:intergenic | 30.0% | |
| !!! | TGGTGGAAAAGAAAGTTTTT+TGG | + | chr1_3:28596644-28596663 | Msa0112930:CDS | 30.0% |
| !!! | GGTGGAAAAGAAAGTTTTTT+GGG | + | chr1_3:28596645-28596664 | Msa0112930:CDS | 30.0% |
| ! | AAGTTATGTTTTGCAATGGT+TGG | + | chr1_3:28596686-28596705 | Msa0112930:CDS | 30.0% |
| !!! | CGAATTTTTTCTTCACTTTC+TGG | - | chr1_3:28597152-28597171 | None:intergenic | 30.0% |
| GAAAAAATTCGACTCTGATA+AGG | + | chr1_3:28597161-28597180 | Msa0112930:CDS | 30.0% | |
| ! | CTCTATCAATGTATGACTTT+TGG | - | chr1_3:28597206-28597225 | None:intergenic | 30.0% |
| !! | TGTGTTTTTGTGCTAAACAA+AGG | + | chr1_3:28597686-28597705 | Msa0112930:CDS | 30.0% |
| !!! | TTGGAAACTCCTTATTTTGA+AGG | + | chr1_3:28597758-28597777 | Msa0112930:CDS | 30.0% |
| !!! | TAATGGTGTCCACTTTTTTA+AGG | + | chr1_3:28596173-28596192 | Msa0112930:CDS | 30.0% |
| GACGAATAACCTTAAAAAAG+TGG | - | chr1_3:28596185-28596204 | None:intergenic | 30.0% | |
| ! | TACCAGTTTTTCTTCTTGAA+GGG | - | chr1_3:28596214-28596233 | None:intergenic | 30.0% |
| ! | TTACCAGTTTTTCTTCTTGA+AGG | - | chr1_3:28596215-28596234 | None:intergenic | 30.0% |
| !! | TTTGTGAAAAGGTATTGGAA+AGG | + | chr1_3:28596586-28596605 | Msa0112930:CDS | 30.0% |
| TAACAAACCCAATTACTCTA+AGG | + | chr1_3:28596611-28596630 | Msa0112930:CDS | 30.0% | |
| TTGGAAACCTTAGAGTAATT+GGG | - | chr1_3:28596621-28596640 | None:intergenic | 30.0% | |
| TTTGGAAACCTTAGAGTAAT+TGG | - | chr1_3:28596622-28596641 | None:intergenic | 30.0% | |
| !!! | TGGTGGAAAAGAAAGTTTTT+TGG | + | chr1_3:28596644-28596663 | Msa0112930:CDS | 30.0% |
| !!! | GGTGGAAAAGAAAGTTTTTT+GGG | + | chr1_3:28596645-28596664 | Msa0112930:CDS | 30.0% |
| ! | AAGTTATGTTTTGCAATGGT+TGG | + | chr1_3:28596686-28596705 | Msa0112930:CDS | 30.0% |
| !!! | CGAATTTTTTCTTCACTTTC+TGG | - | chr1_3:28597152-28597171 | None:intergenic | 30.0% |
| GAAAAAATTCGACTCTGATA+AGG | + | chr1_3:28597161-28597180 | Msa0112930:CDS | 30.0% | |
| ! | CTCTATCAATGTATGACTTT+TGG | - | chr1_3:28597206-28597225 | None:intergenic | 30.0% |
| !! | TGTGTTTTTGTGCTAAACAA+AGG | + | chr1_3:28597686-28597705 | Msa0112930:CDS | 30.0% |
| !!! | TTGGAAACTCCTTATTTTGA+AGG | + | chr1_3:28597758-28597777 | Msa0112930:CDS | 30.0% |
| ATGTCTTCTCAAGAGAGTAA+TGG | + | chr1_3:28596156-28596175 | Msa0112930:CDS | 35.0% | |
| TACCCTTCAAGAAGAAAAAC+TGG | + | chr1_3:28596209-28596228 | Msa0112930:CDS | 35.0% | |
| AATGATTGTTCGAATATCGG+TGG | + | chr1_3:28596417-28596436 | Msa0112930:intron | 35.0% | |
| !! | TGCCCATAAGTTTTGTGAAA+AGG | + | chr1_3:28596575-28596594 | Msa0112930:CDS | 35.0% |
| !! | TACTCTAAGGTTTCCAAACA+TGG | + | chr1_3:28596624-28596643 | Msa0112930:CDS | 35.0% |
| ! | ACTTTCTTTTCCACCATGTT+TGG | - | chr1_3:28596640-28596659 | None:intergenic | 35.0% |
| ATACATTGATAGAGATCGCT+TGG | + | chr1_3:28597212-28597231 | Msa0112930:intron | 35.0% | |
| CCAATCACAATCCATTATGT+AGG | - | chr1_3:28597379-28597398 | None:intergenic | 35.0% | |
| !! | CCTACATAATGGATTGTGAT+TGG | + | chr1_3:28597376-28597395 | Msa0112930:intron | 35.0% |
| AAACAATCTGCACTAACTTG+TGG | + | chr1_3:28597617-28597636 | Msa0112930:CDS | 35.0% | |
| ! | TTTCTCTTTGGAAAAGGACT+TGG | + | chr1_3:28597739-28597758 | Msa0112930:CDS | 35.0% |
| ATGTCTTCTCAAGAGAGTAA+TGG | + | chr1_3:28596156-28596175 | Msa0112930:CDS | 35.0% | |
| TACCCTTCAAGAAGAAAAAC+TGG | + | chr1_3:28596209-28596228 | Msa0112930:CDS | 35.0% | |
| AATGATTGTTCGAATATCGG+TGG | + | chr1_3:28596417-28596436 | Msa0112930:intron | 35.0% | |
| !! | TGCCCATAAGTTTTGTGAAA+AGG | + | chr1_3:28596575-28596594 | Msa0112930:CDS | 35.0% |
| !! | TACTCTAAGGTTTCCAAACA+TGG | + | chr1_3:28596624-28596643 | Msa0112930:CDS | 35.0% |
| ! | ACTTTCTTTTCCACCATGTT+TGG | - | chr1_3:28596640-28596659 | None:intergenic | 35.0% |
| ATACATTGATAGAGATCGCT+TGG | + | chr1_3:28597212-28597231 | Msa0112930:intron | 35.0% | |
| CCAATCACAATCCATTATGT+AGG | - | chr1_3:28597379-28597398 | None:intergenic | 35.0% | |
| !! | CCTACATAATGGATTGTGAT+TGG | + | chr1_3:28597376-28597395 | Msa0112930:intron | 35.0% |
| AAACAATCTGCACTAACTTG+TGG | + | chr1_3:28597617-28597636 | Msa0112930:CDS | 35.0% | |
| ! | TTTCTCTTTGGAAAAGGACT+TGG | + | chr1_3:28597739-28597758 | Msa0112930:CDS | 35.0% |
| ! | TCTAAGGTTTCCAAACATGG+TGG | + | chr1_3:28596627-28596646 | Msa0112930:CDS | 40.0% |
| AATACCCGTCAAGAGAAACT+AGG | + | chr1_3:28596821-28596840 | Msa0112930:CDS | 40.0% | |
| ATACCCGTCAAGAGAAACTA+GGG | + | chr1_3:28596822-28596841 | Msa0112930:CDS | 40.0% | |
| TCTTCCCTAGTTTCTCTTGA+CGG | - | chr1_3:28596829-28596848 | None:intergenic | 40.0% | |
| TTGAGAATCCTTCGTCATCA+CGG | + | chr1_3:28596881-28596900 | Msa0112930:CDS | 40.0% | |
| GTTAAGACACATGGACATGA+TGG | + | chr1_3:28597529-28597548 | Msa0112930:CDS | 40.0% | |
| ! | AATCTGCACTAACTTGTGGT+TGG | + | chr1_3:28597621-28597640 | Msa0112930:CDS | 40.0% |
| ! | TCTAAGGTTTCCAAACATGG+TGG | + | chr1_3:28596627-28596646 | Msa0112930:CDS | 40.0% |
| AATACCCGTCAAGAGAAACT+AGG | + | chr1_3:28596821-28596840 | Msa0112930:CDS | 40.0% | |
| ATACCCGTCAAGAGAAACTA+GGG | + | chr1_3:28596822-28596841 | Msa0112930:CDS | 40.0% | |
| TCTTCCCTAGTTTCTCTTGA+CGG | - | chr1_3:28596829-28596848 | None:intergenic | 40.0% | |
| TTGAGAATCCTTCGTCATCA+CGG | + | chr1_3:28596881-28596900 | Msa0112930:CDS | 40.0% | |
| GTTAAGACACATGGACATGA+TGG | + | chr1_3:28597529-28597548 | Msa0112930:CDS | 40.0% | |
| ! | AATCTGCACTAACTTGTGGT+TGG | + | chr1_3:28597621-28597640 | Msa0112930:CDS | 40.0% |
| CTTCCCTAGTTTCTCTTGAC+GGG | - | chr1_3:28596828-28596847 | None:intergenic | 45.0% | |
| TGAGAATCCTTCGTCATCAC+GGG | + | chr1_3:28596882-28596901 | Msa0112930:CDS | 45.0% | |
| AAGCGTGAGCATGTGAACAA+TGG | + | chr1_3:28596985-28597004 | Msa0112930:CDS | 45.0% | |
| GTGAGCATGTGAACAATGGT+TGG | + | chr1_3:28596989-28597008 | Msa0112930:intron | 45.0% | |
| ! | AGACACATGGACATGATGGA+AGG | + | chr1_3:28597533-28597552 | Msa0112930:CDS | 45.0% |
| CTTCCCTAGTTTCTCTTGAC+GGG | - | chr1_3:28596828-28596847 | None:intergenic | 45.0% | |
| TGAGAATCCTTCGTCATCAC+GGG | + | chr1_3:28596882-28596901 | Msa0112930:CDS | 45.0% | |
| AAGCGTGAGCATGTGAACAA+TGG | + | chr1_3:28596985-28597004 | Msa0112930:CDS | 45.0% | |
| GTGAGCATGTGAACAATGGT+TGG | + | chr1_3:28596989-28597008 | Msa0112930:intron | 45.0% | |
| ! | AGACACATGGACATGATGGA+AGG | + | chr1_3:28597533-28597552 | Msa0112930:CDS | 45.0% |
| GAGAATCCTTCGTCATCACG+GGG | + | chr1_3:28596883-28596902 | Msa0112930:CDS | 50.0% | |
| !! | CTTTTACCCCGTGATGACGA+AGG | - | chr1_3:28596892-28596911 | None:intergenic | 50.0% |
| CTTCGTCATCACGGGGTAAA+AGG | + | chr1_3:28596890-28596909 | Msa0112930:CDS | 50.0% | |
| GAGAATCCTTCGTCATCACG+GGG | + | chr1_3:28596883-28596902 | Msa0112930:CDS | 50.0% | |
| !! | CTTTTACCCCGTGATGACGA+AGG | - | chr1_3:28596892-28596911 | None:intergenic | 50.0% |
| CTTCGTCATCACGGGGTAAA+AGG | + | chr1_3:28596890-28596909 | Msa0112930:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 28596156 | 28597820 | 28596156 | ID=Msa0112930;Name=Msa0112930 |
| chr1_3 | mRNA | 28596156 | 28597820 | 28596156 | ID=Msa0112930-mRNA-1;Parent=Msa0112930;Name=Msa0112930-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|0.5|0.2|5|0|302 |
| chr1_3 | exon | 28596156 | 28596230 | 28596156 | ID=Msa0112930-mRNA-1:exon:9411;Parent=Msa0112930-mRNA-1 |
| chr1_3 | exon | 28596571 | 28596799 | 28596571 | ID=Msa0112930-mRNA-1:exon:9412;Parent=Msa0112930-mRNA-1 |
| chr1_3 | exon | 28596815 | 28597006 | 28596815 | ID=Msa0112930-mRNA-1:exon:9413;Parent=Msa0112930-mRNA-1 |
| chr1_3 | exon | 28597106 | 28597208 | 28597106 | ID=Msa0112930-mRNA-1:exon:9414;Parent=Msa0112930-mRNA-1 |
| chr1_3 | exon | 28597511 | 28597820 | 28597511 | ID=Msa0112930-mRNA-1:exon:9415;Parent=Msa0112930-mRNA-1 |
| chr1_3 | CDS | 28596156 | 28596230 | 28596156 | ID=Msa0112930-mRNA-1:cds;Parent=Msa0112930-mRNA-1 |
| chr1_3 | CDS | 28596571 | 28596799 | 28596571 | ID=Msa0112930-mRNA-1:cds;Parent=Msa0112930-mRNA-1 |
| chr1_3 | CDS | 28596815 | 28597006 | 28596815 | ID=Msa0112930-mRNA-1:cds;Parent=Msa0112930-mRNA-1 |
| chr1_3 | CDS | 28597106 | 28597208 | 28597106 | ID=Msa0112930-mRNA-1:cds;Parent=Msa0112930-mRNA-1 |
| chr1_3 | CDS | 28597511 | 28597820 | 28597511 | ID=Msa0112930-mRNA-1:cds;Parent=Msa0112930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
