Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112970 | A0A396JPU6 | 75.000 | 244 | 48 | 3 | 24 | 254 | 156 | 399 | 1.91e-121 | 361 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0112970 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112970 | MtrunA17_Chr1g0163201 | 75.000 | 244 | 48 | 3 | 24 | 254 | 156 | 399 | 3.67e-125 | 361 |
| Msa0112970 | MtrunA17_Chr1g0163181 | 66.914 | 269 | 54 | 2 | 23 | 256 | 170 | 438 | 1.29e-122 | 356 |
| Msa0112970 | MtrunA17_Chr1g0163151 | 70.721 | 222 | 59 | 1 | 33 | 248 | 1 | 222 | 9.85e-111 | 318 |
| Msa0112970 | MtrunA17_Chr1g0163111 | 65.106 | 235 | 59 | 4 | 33 | 249 | 1 | 230 | 7.09e-100 | 291 |
| Msa0112970 | MtrunA17_Chr1g0162151 | 41.096 | 219 | 111 | 5 | 33 | 246 | 1 | 206 | 9.38e-43 | 145 |
| Msa0112970 | MtrunA17_Chr6g0476171 | 36.667 | 240 | 131 | 6 | 29 | 247 | 6 | 245 | 9.92e-43 | 145 |
| Msa0112970 | MtrunA17_Chr6g0476171 | 35.862 | 145 | 71 | 6 | 1 | 144 | 121 | 244 | 1.37e-11 | 62.8 |
| Msa0112970 | MtrunA17_Chr1g0163261 | 47.183 | 142 | 66 | 1 | 23 | 155 | 151 | 292 | 3.21e-38 | 135 |
| Msa0112970 | MtrunA17_Chr1g0163251 | 40.828 | 169 | 82 | 3 | 23 | 186 | 152 | 307 | 3.96e-33 | 124 |
| Msa0112970 | MtrunA17_Chr1g0163091 | 41.259 | 143 | 78 | 2 | 33 | 170 | 1 | 142 | 7.18e-33 | 117 |
| Msa0112970 | MtrunA17_Chr1g0163231 | 45.455 | 132 | 65 | 5 | 23 | 148 | 151 | 281 | 1.95e-26 | 104 |
| Msa0112970 | MtrunA17_Chr1g0171611 | 46.212 | 132 | 65 | 5 | 23 | 148 | 138 | 269 | 9.92e-24 | 97.1 |
| Msa0112970 | MtrunA17_Chr1g0163131 | 50.617 | 81 | 34 | 2 | 175 | 249 | 228 | 308 | 2.71e-16 | 77.0 |
| Msa0112970 | MtrunA17_Chr5g0419211 | 34.409 | 93 | 59 | 2 | 68 | 159 | 11 | 102 | 6.62e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 71 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATATTAAGCAATGTATTT+TGG | 0.173369 | 1_3:+28659694 | Msa0112970:three_prime_UTR |
| AAATATCTTGGAGTTGAAAA+TGG | 0.201158 | 1_3:+28659431 | Msa0112970:CDS |
| TTAGCTGTGCTTCTTTATTA+AGG | 0.220445 | 1_3:+28659615 | Msa0112970:CDS |
| CATTAACATCTTCAGATCTT+AGG | 0.260861 | 1_3:-28658177 | None:intergenic |
| TTAATGGAACTGCAACAATA+AGG | 0.277244 | 1_3:+28658370 | Msa0112970:CDS |
| AGGCTGACACGATACTTCTT+AGG | 0.294304 | 1_3:-28659745 | None:intergenic |
| GCATAACACATTCAAGGTTT+TGG | 0.294441 | 1_3:+28659269 | Msa0112970:CDS |
| AGGCATGGTTCCTTTGTAGC+TGG | 0.320210 | 1_3:-28657276 | None:intergenic |
| ATAGTAACATTGAAAGAAAT+TGG | 0.322432 | 1_3:-28658540 | None:intergenic |
| AGAAAACCTAGTGATTTCTT+TGG | 0.323706 | 1_3:-28658588 | None:intergenic |
| CCTAGTGATTTCTTTGGCTT+TGG | 0.332979 | 1_3:-28658582 | None:intergenic |
| AATATCTTGGAGTTGAAAAT+GGG | 0.359463 | 1_3:+28659432 | Msa0112970:CDS |
| TGAAACAGAGGATACCTAAT+TGG | 0.359645 | 1_3:+28657025 | Msa0112970:intron |
| CGACGTTAAATTTCGATGAA+TGG | 0.363870 | 1_3:+28657127 | Msa0112970:five_prime_UTR |
| GTGTTTGATGTTTCAATTGT+TGG | 0.364550 | 1_3:+28659582 | Msa0112970:CDS |
| TAATGGAACTGCAACAATAA+GGG | 0.376410 | 1_3:+28658371 | Msa0112970:CDS |
| TAATAAAGAAGCACAGCTAA+TGG | 0.396679 | 1_3:-28659612 | None:intergenic |
| AGCAGCTCTGCAAGAGGCTA+AGG | 0.411495 | 1_3:+28656730 | Msa0112970:five_prime_UTR |
| AGAAGTATCGTGTCAGCCTT+TGG | 0.411525 | 1_3:+28659749 | Msa0112970:three_prime_UTR |
| GGGATATAATGAAAATATCT+TGG | 0.418536 | 1_3:+28659419 | Msa0112970:CDS |
| GTGGTGGATGGAAAATATTC+AGG | 0.420444 | 1_3:+28658460 | Msa0112970:CDS |
| AAAGAATGCAAAGTGGAGAT+TGG | 0.426567 | 1_3:+28659519 | Msa0112970:CDS |
| TGCTTAATATTGCACATGAA+AGG | 0.432606 | 1_3:-28659683 | None:intergenic |
| AGCTACAAAGGAACCATGCC+TGG | 0.433161 | 1_3:+28657278 | Msa0112970:CDS |
| ATAGTAATTGTGAATGAAAG+TGG | 0.438268 | 1_3:-28657249 | None:intergenic |
| ACCAAAGGAGTTTATGAAAA+GGG | 0.442898 | 1_3:+28659398 | Msa0112970:CDS |
| GCTTAATATTGCACATGAAA+GGG | 0.452634 | 1_3:-28659682 | None:intergenic |
| GATGAAGCATAACACATTCA+AGG | 0.455053 | 1_3:+28659263 | Msa0112970:CDS |
| GGCATGGTTCCTTTGTAGCT+GGG | 0.456521 | 1_3:-28657275 | None:intergenic |
| TGACATTATAACTTCAAAAG+AGG | 0.466279 | 1_3:-28658206 | None:intergenic |
| GTGTTATGCTTCATCACATC+AGG | 0.468230 | 1_3:-28659255 | None:intergenic |
| TACCAAAGGAGTTTATGAAA+AGG | 0.473211 | 1_3:+28659397 | Msa0112970:CDS |
| CAAAGTGGCCATGGTAAAGA+AGG | 0.488314 | 1_3:+28658144 | Msa0112970:CDS |
| CCATGCCTGGAGCAGTTTCA+AGG | 0.511461 | 1_3:+28657291 | Msa0112970:CDS |
| AAATACCTTGAAACTGCTCC+AGG | 0.519839 | 1_3:-28657296 | None:intergenic |
| ATATTTGTTTCTATGATTGT+TGG | 0.520904 | 1_3:+28659772 | Msa0112970:three_prime_UTR |
| TGGTTGGAAGTCGTTTGTGC+AGG | 0.521812 | 1_3:+28657173 | Msa0112970:five_prime_UTR |
| GTGACTGTTACTGAAGTGTT+AGG | 0.532912 | 1_3:+28656639 | Msa0112970:five_prime_UTR |
| CAATAAGGGTTGGTAATGAA+AGG | 0.551596 | 1_3:+28658385 | Msa0112970:CDS |
| AACACTTCAGTAACAGTCAC+AGG | 0.555579 | 1_3:-28656636 | None:intergenic |
| CCAAAGCCAAAGAAATCACT+AGG | 0.556666 | 1_3:+28658582 | Msa0112970:CDS |
| GTAAATTTGAGATGATTCGA+CGG | 0.557247 | 1_3:+28658514 | Msa0112970:CDS |
| TGTTCTCTTGAAAACTCACT+TGG | 0.561927 | 1_3:-28658336 | None:intergenic |
| TTTGGTGAAGAACAATGCCC+CGG | 0.564050 | 1_3:+28659287 | Msa0112970:CDS |
| GTATTTGCAGAGTGTACCAA+AGG | 0.570521 | 1_3:+28659383 | Msa0112970:intron |
| TACATGAAAGAGTTGTTGCA+AGG | 0.571480 | 1_3:+28657060 | Msa0112970:five_prime_UTR |
| AGTGGCTGCAAGTTTAGTAA+AGG | 0.571811 | 1_3:+28659480 | Msa0112970:CDS |
| AGGTAGTAACAAAGTGGCCA+TGG | 0.577811 | 1_3:+28658135 | Msa0112970:intron |
| CCTTGAAACTGCTCCAGGCA+TGG | 0.579128 | 1_3:-28657291 | None:intergenic |
| GGAACTGCAACAATAAGGGT+TGG | 0.581562 | 1_3:+28658375 | Msa0112970:CDS |
| GCTGCAAGTTTAGTAAAGGA+TGG | 0.582172 | 1_3:+28659484 | Msa0112970:CDS |
| CCAAAGGAGTTTATGAAAAG+GGG | 0.584375 | 1_3:+28659399 | Msa0112970:CDS |
| AATATTGTATGGGTGGTGGA+TGG | 0.587908 | 1_3:+28658448 | Msa0112970:CDS |
| AAGAGTAGCAGCTCTGCAAG+AGG | 0.595627 | 1_3:+28656724 | Msa0112970:five_prime_UTR |
| ATTTATGAAAGAATGCAAAG+TGG | 0.597056 | 1_3:+28659512 | Msa0112970:CDS |
| ACTTACAAAGAAATAGCCAT+TGG | 0.605595 | 1_3:-28658239 | None:intergenic |
| ATGTCACAATCTTACGCCAA+TGG | 0.605717 | 1_3:+28658223 | Msa0112970:CDS |
| GGTTGGTAATGAAAGGAGTG+TGG | 0.605745 | 1_3:+28658392 | Msa0112970:CDS |
| TACTATTATCCCAGCTACAA+AGG | 0.605894 | 1_3:+28657266 | Msa0112970:CDS |
| ACATGAAAGAGTTGTTGCAA+GGG | 0.610644 | 1_3:+28657061 | Msa0112970:five_prime_UTR |
| CAGGAACATAACTTGTAAGC+TGG | 0.612113 | 1_3:+28657192 | Msa0112970:five_prime_UTR |
| TGAAAATGGGGAGAAAGTCA+TGG | 0.631530 | 1_3:+28659445 | Msa0112970:CDS |
| ATATCTTGGAGTTGAAAATG+GGG | 0.639227 | 1_3:+28659433 | Msa0112970:CDS |
| AACGATTAGAAATGTTGATG+AGG | 0.639795 | 1_3:+28657089 | Msa0112970:five_prime_UTR |
| TCATAGAAACAAATATCCAA+AGG | 0.646736 | 1_3:-28659765 | None:intergenic |
| TCATGGTTCGTAAAAGTCAG+TGG | 0.652056 | 1_3:+28659462 | Msa0112970:CDS |
| GGAGTGTGGAAGTGAGTGTG+AGG | 0.659449 | 1_3:+28658406 | Msa0112970:CDS |
| TAGCTTTAAGCATTGCTCAG+AGG | 0.663605 | 1_3:+28656692 | Msa0112970:five_prime_UTR |
| CTTGGCAGGTAGTAACAAAG+TGG | 0.671173 | 1_3:+28658129 | Msa0112970:intron |
| GAAGTGTTAGGACCAGACAA+AGG | 0.713261 | 1_3:+28656651 | Msa0112970:five_prime_UTR |
| ATGTTGATGAGGACATGACA+TGG | 0.737782 | 1_3:+28657100 | Msa0112970:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAAAAATGTGATTTTTTT+TGG | + | chr1_3:28657987-28658006 | Msa0112970:intron | 10.0% |
| !!! | ACTTTTTAATATTTAGTAAT+TGG | + | chr1_3:28659054-28659073 | Msa0112970:intron | 10.0% |
| !! | AACCAAATACTTATATATTA+TGG | - | chr1_3:28657456-28657475 | None:intergenic | 15.0% |
| !!! | ATTTAATCAATTTTGTTAGT+TGG | + | chr1_3:28657734-28657753 | Msa0112970:intron | 15.0% |
| !!! | TTCTTTCTTTCTTTTTTATT+TGG | + | chr1_3:28658607-28658626 | Msa0112970:intron | 15.0% |
| !!! | TTTAGATTTTATTATTGTAG+AGG | + | chr1_3:28658854-28658873 | Msa0112970:intron | 15.0% |
| !!! | TTAGATTTTATTATTGTAGA+GGG | + | chr1_3:28658855-28658874 | Msa0112970:intron | 15.0% |
| !! | AAACTTATGAATGATTTATA+AGG | + | chr1_3:28658945-28658964 | Msa0112970:intron | 15.0% |
| !! | CTAACATATAATTTATAGTT+AGG | - | chr1_3:28659121-28659140 | None:intergenic | 15.0% |
| !!! | TTAAACATCTCTTAATTTTT+TGG | + | chr1_3:28659175-28659194 | Msa0112970:intron | 15.0% |
| !!! | TAAACATCTCTTAATTTTTT+GGG | + | chr1_3:28659176-28659195 | Msa0112970:intron | 15.0% |
| !!! | TTTTGGGTATTATAAAAATT+TGG | + | chr1_3:28659192-28659211 | Msa0112970:intron | 15.0% |
| !! | TCAATACATTTACTAAAATA+TGG | - | chr1_3:28660442-28660461 | None:intergenic | 15.0% |
| !! | ATTCATTAATCAAACGTATA+AGG | - | chr1_3:28656973-28656992 | None:intergenic | 20.0% |
| !!! | TATTCTTTTGAAATCCAATT+AGG | - | chr1_3:28657042-28657061 | None:intergenic | 20.0% |
| !!! | TCTTTCGTTATTATTGTTTT+TGG | + | chr1_3:28657318-28657337 | Msa0112970:intron | 20.0% |
| !! | CACCATAATATATAAGTATT+TGG | + | chr1_3:28657451-28657470 | Msa0112970:intron | 20.0% |
| !!! | AAAATGTGATTTTTTTTGGT+AGG | + | chr1_3:28657991-28658010 | Msa0112970:intron | 20.0% |
| !! | ATAGTAACATTGAAAGAAAT+TGG | - | chr1_3:28658543-28658562 | None:intergenic | 20.0% |
| !! | AAATATGATTTCAAATTCAC+AGG | - | chr1_3:28659021-28659040 | None:intergenic | 20.0% |
| !!! | AGGATTAGTTACATAAAATA+TGG | + | chr1_3:28659311-28659330 | Msa0112970:intron | 20.0% |
| !!! | CAATATTAAGCAATGTATTT+TGG | + | chr1_3:28659694-28659713 | Msa0112970:three_prime_UTR | 20.0% |
| !!! | ATATTTGTTTCTATGATTGT+TGG | + | chr1_3:28659772-28659791 | Msa0112970:three_prime_UTR | 20.0% |
| !! | ATAAAACTCAAATTTGTACA+TGG | + | chr1_3:28660265-28660284 | Msa0112970:intron | 20.0% |
| !!! | AGTAAATAGTTGAAACATTT+TGG | + | chr1_3:28660497-28660516 | Msa0112970:intron | 20.0% |
| !!! | TATGTTGTTTTAGTTGAGTT+TGG | + | chr1_3:28656909-28656928 | Msa0112970:intron | 25.0% |
| ! | ACCTTATTACAACATATAAG+CGG | - | chr1_3:28656945-28656964 | None:intergenic | 25.0% |
| ! | TATATGTTGTAATAAGGTTC+AGG | + | chr1_3:28656947-28656966 | Msa0112970:intron | 25.0% |
| ! | ATAGTAATTGTGAATGAAAG+TGG | - | chr1_3:28657252-28657271 | None:intergenic | 25.0% |
| ! | TCAATCATATATGTTCATCA+TGG | + | chr1_3:28657422-28657441 | Msa0112970:intron | 25.0% |
| !!! | GGTTTTAGTCATTCTAATAT+TGG | + | chr1_3:28657472-28657491 | Msa0112970:intron | 25.0% |
| ! | ATTATGCATGTATATACTAC+AGG | + | chr1_3:28657517-28657536 | Msa0112970:intron | 25.0% |
| ! | TTATGCATGTATATACTACA+GGG | + | chr1_3:28657518-28657537 | Msa0112970:intron | 25.0% |
| !!! | AGTTTTTTTCCAAGTACTAA+AGG | + | chr1_3:28657625-28657644 | Msa0112970:intron | 25.0% |
| ! | TATATATCACCTTTAGTACT+TGG | - | chr1_3:28657637-28657656 | None:intergenic | 25.0% |
| !! | ACTTTATGATGACATAGTTT+TGG | - | chr1_3:28657784-28657803 | None:intergenic | 25.0% |
| ! | AAATAGTTAATGCCTAAACT+TGG | + | chr1_3:28658111-28658130 | Msa0112970:intron | 25.0% |
| ! | TGACATTATAACTTCAAAAG+AGG | - | chr1_3:28658209-28658228 | None:intergenic | 25.0% |
| !! | GAACACTTGAAAGATTTTAA+TGG | + | chr1_3:28658354-28658373 | Msa0112970:CDS | 25.0% |
| ! | TACCCAGAAAAAATATTGTA+TGG | + | chr1_3:28658437-28658456 | Msa0112970:CDS | 25.0% |
| ! | ACCCAGAAAAAATATTGTAT+GGG | + | chr1_3:28658438-28658457 | Msa0112970:CDS | 25.0% |
| !!! | ACCCATACAATATTTTTTCT+GGG | - | chr1_3:28658442-28658461 | None:intergenic | 25.0% |
| !!! | TTTTTTTGTTATCCATGACA+AGG | + | chr1_3:28658720-28658739 | Msa0112970:intron | 25.0% |
| ! | CATGACAAGGTTATAAAAAA+GGG | + | chr1_3:28658733-28658752 | Msa0112970:intron | 25.0% |
| ! | ATGACAAGGTTATAAAAAAG+GGG | + | chr1_3:28658734-28658753 | Msa0112970:intron | 25.0% |
| ! | TGAATGATTTATAAGGTTCT+TGG | + | chr1_3:28658952-28658971 | Msa0112970:intron | 25.0% |
| !!! | GTTAGGTTTTAAACTAGAAA+AGG | - | chr1_3:28659104-28659123 | None:intergenic | 25.0% |
| !! | TTTTATGTAACTAATCCTAC+CGG | - | chr1_3:28659309-28659328 | None:intergenic | 25.0% |
| ! | GGGATATAATGAAAATATCT+TGG | + | chr1_3:28659419-28659438 | Msa0112970:CDS | 25.0% |
| ! | AAATATCTTGGAGTTGAAAA+TGG | + | chr1_3:28659431-28659450 | Msa0112970:CDS | 25.0% |
| ! | AATATCTTGGAGTTGAAAAT+GGG | + | chr1_3:28659432-28659451 | Msa0112970:CDS | 25.0% |
| ! | ATTTATGAAAGAATGCAAAG+TGG | + | chr1_3:28659512-28659531 | Msa0112970:CDS | 25.0% |
| ! | TCATAGAAACAAATATCCAA+AGG | - | chr1_3:28659768-28659787 | None:intergenic | 25.0% |
| !! | TTTAGGTTCTATGATATTTG+TGG | + | chr1_3:28659810-28659829 | Msa0112970:intron | 25.0% |
| !! | CGTGAAATTATTCATCTTTT+TGG | + | chr1_3:28659907-28659926 | Msa0112970:intron | 25.0% |
| !! | ATTTTCATCCAACAAAAATG+AGG | - | chr1_3:28659997-28660016 | None:intergenic | 25.0% |
| ! | ATTCTTCAAAAACAAAGACA+TGG | + | chr1_3:28660202-28660221 | Msa0112970:intron | 25.0% |
| ! | TATATTTGTTCAACTACCAA+AGG | + | chr1_3:28660318-28660337 | Msa0112970:intron | 25.0% |
| ! | TTTACTATAGAGGAAATATG+TGG | - | chr1_3:28660483-28660502 | None:intergenic | 25.0% |
| ! | GTTTCAACTATTTACTATAG+AGG | - | chr1_3:28660493-28660512 | None:intergenic | 25.0% |
| ! | ATGATGATTCACAATGAAAT+GGG | - | chr1_3:28660576-28660595 | None:intergenic | 25.0% |
| ! | TATGATGATTCACAATGAAA+TGG | - | chr1_3:28660577-28660596 | None:intergenic | 25.0% |
| ! | ATTTCATTGTGAATCATCAT+AGG | + | chr1_3:28660576-28660595 | Msa0112970:intron | 25.0% |
| ! | TTCTGAATTTTTCCTTTGTC+TGG | - | chr1_3:28656666-28656685 | None:intergenic | 30.0% |
| CATGACAGTCAAACATATTT+GGG | - | chr1_3:28656823-28656842 | None:intergenic | 30.0% | |
| TCATGACAGTCAAACATATT+TGG | - | chr1_3:28656824-28656843 | None:intergenic | 30.0% | |
| AACGATTAGAAATGTTGATG+AGG | + | chr1_3:28657089-28657108 | Msa0112970:five_prime_UTR | 30.0% | |
| !!! | TTTGGCTCAAATCACTTTTT+AGG | - | chr1_3:28657766-28657785 | None:intergenic | 30.0% |
| GAATGAAACATTCAATGACT+CGG | + | chr1_3:28657841-28657860 | Msa0112970:intron | 30.0% | |
| !!! | CTTTTAATTTGCCACAAAAG+TGG | - | chr1_3:28657925-28657944 | None:intergenic | 30.0% |
| CATTAACATCTTCAGATCTT+AGG | - | chr1_3:28658180-28658199 | None:intergenic | 30.0% | |
| ACTTACAAAGAAATAGCCAT+TGG | - | chr1_3:28658242-28658261 | None:intergenic | 30.0% | |
| TAAACCATTACTTGAAACAG+TGG | + | chr1_3:28658310-28658329 | Msa0112970:intron | 30.0% | |
| TTAATGGAACTGCAACAATA+AGG | + | chr1_3:28658370-28658389 | Msa0112970:CDS | 30.0% | |
| TAATGGAACTGCAACAATAA+GGG | + | chr1_3:28658371-28658390 | Msa0112970:CDS | 30.0% | |
| !!! | CACCCATACAATATTTTTTC+TGG | - | chr1_3:28658443-28658462 | None:intergenic | 30.0% |
| CAGAAAAAATATTGTATGGG+TGG | + | chr1_3:28658441-28658460 | Msa0112970:CDS | 30.0% | |
| AAAAAATATTGTATGGGTGG+TGG | + | chr1_3:28658444-28658463 | Msa0112970:CDS | 30.0% | |
| ! | GTAAATTTGAGATGATTCGA+CGG | + | chr1_3:28658514-28658533 | Msa0112970:CDS | 30.0% |
| AGAAAACCTAGTGATTTCTT+TGG | - | chr1_3:28658591-28658610 | None:intergenic | 30.0% | |
| !!! | CCTTTTTTATAACCTTGTCA+TGG | - | chr1_3:28658735-28658754 | None:intergenic | 30.0% |
| CCATGACAAGGTTATAAAAA+AGG | + | chr1_3:28658732-28658751 | Msa0112970:intron | 30.0% | |
| GTTGTAAAGAAGCAAAACAT+TGG | + | chr1_3:28658774-28658793 | Msa0112970:intron | 30.0% | |
| TTTATGTAACTAATCCTACC+GGG | - | chr1_3:28659308-28659327 | None:intergenic | 30.0% | |
| TACCAAAGGAGTTTATGAAA+AGG | + | chr1_3:28659397-28659416 | Msa0112970:CDS | 30.0% | |
| ACCAAAGGAGTTTATGAAAA+GGG | + | chr1_3:28659398-28659417 | Msa0112970:CDS | 30.0% | |
| ATATCTTGGAGTTGAAAATG+GGG | + | chr1_3:28659433-28659452 | Msa0112970:CDS | 30.0% | |
| GTGTTTGATGTTTCAATTGT+TGG | + | chr1_3:28659582-28659601 | Msa0112970:CDS | 30.0% | |
| ! | TAATAAAGAAGCACAGCTAA+TGG | - | chr1_3:28659615-28659634 | None:intergenic | 30.0% |
| TTAGCTGTGCTTCTTTATTA+AGG | + | chr1_3:28659615-28659634 | Msa0112970:CDS | 30.0% | |
| GCTTAATATTGCACATGAAA+GGG | - | chr1_3:28659685-28659704 | None:intergenic | 30.0% | |
| TGCTTAATATTGCACATGAA+AGG | - | chr1_3:28659686-28659705 | None:intergenic | 30.0% | |
| ! | GGTAATGTGCTTTAAACTTT+AGG | + | chr1_3:28659793-28659812 | Msa0112970:intron | 30.0% |
| TTGTGACTGTTCATCTATAA+TGG | - | chr1_3:28659939-28659958 | None:intergenic | 30.0% | |
| !! | TAAAGACAATATGACTTGCT+TGG | + | chr1_3:28660049-28660068 | Msa0112970:intron | 30.0% |
| !! | ACTTGTTTTCATTGTTCCTT+TGG | - | chr1_3:28660337-28660356 | None:intergenic | 30.0% |
| ACAATGAAAACAAGTCACTA+AGG | + | chr1_3:28660342-28660361 | Msa0112970:intron | 30.0% | |
| !! | GCAGAATTGATTTGCTTTAT+GGG | - | chr1_3:28660420-28660439 | None:intergenic | 30.0% |
| CATAGGATAATATTACTCAC+AGG | + | chr1_3:28660593-28660612 | Msa0112970:intron | 30.0% | |
| ATCCAAACTCGTTCCAAAAA+GGG | + | chr1_3:28656781-28656800 | Msa0112970:intron | 35.0% | |
| !! | GCTTTTGATTACACCCTTTT+TGG | - | chr1_3:28656797-28656816 | None:intergenic | 35.0% |
| ATGCAAAGAAGCAAATCAAC+TGG | - | chr1_3:28656888-28656907 | None:intergenic | 35.0% | |
| GCCGCTTATATGTTGTAATA+AGG | + | chr1_3:28656941-28656960 | Msa0112970:intron | 35.0% | |
| ! | TAAACCATGATCTGAAACAG+AGG | + | chr1_3:28657013-28657032 | Msa0112970:intron | 35.0% |
| TGAAACAGAGGATACCTAAT+TGG | + | chr1_3:28657025-28657044 | Msa0112970:intron | 35.0% | |
| TACATGAAAGAGTTGTTGCA+AGG | + | chr1_3:28657060-28657079 | Msa0112970:five_prime_UTR | 35.0% | |
| ACATGAAAGAGTTGTTGCAA+GGG | + | chr1_3:28657061-28657080 | Msa0112970:five_prime_UTR | 35.0% | |
| CGACGTTAAATTTCGATGAA+TGG | + | chr1_3:28657127-28657146 | Msa0112970:five_prime_UTR | 35.0% | |
| TACTATTATCCCAGCTACAA+AGG | + | chr1_3:28657266-28657285 | Msa0112970:CDS | 35.0% | |
| GTGATGATACACACACAAAT+AGG | + | chr1_3:28657888-28657907 | Msa0112970:intron | 35.0% | |
| !! | ACAAAGCAAATCCACTTTTG+TGG | + | chr1_3:28657911-28657930 | Msa0112970:intron | 35.0% |
| !! | TTTTCTAGCCTTCTTTACCA+TGG | - | chr1_3:28658155-28658174 | None:intergenic | 35.0% |
| ! | GTATCCACTGTTTCAAGTAA+TGG | - | chr1_3:28658317-28658336 | None:intergenic | 35.0% |
| TGTTCTCTTGAAAACTCACT+TGG | - | chr1_3:28658339-28658358 | None:intergenic | 35.0% | |
| !! | CAATAAGGGTTGGTAATGAA+AGG | + | chr1_3:28658385-28658404 | Msa0112970:CDS | 35.0% |
| TATAAAAAAGGGGTCTCTTG+TGG | + | chr1_3:28658744-28658763 | Msa0112970:intron | 35.0% | |
| GTAAAGAAGCAAAACATTGG+AGG | + | chr1_3:28658777-28658796 | Msa0112970:intron | 35.0% | |
| AAAACATTGGAGGAACATCT+AGG | + | chr1_3:28658787-28658806 | Msa0112970:intron | 35.0% | |
| !! | CAATACCCTTTACTTTTGGA+TGG | - | chr1_3:28658815-28658834 | None:intergenic | 35.0% |
| ! | AGAGCAATACCCTTTACTTT+TGG | - | chr1_3:28658819-28658838 | None:intergenic | 35.0% |
| AACTGAATGCTGGATAAGTT+AGG | - | chr1_3:28659080-28659099 | None:intergenic | 35.0% | |
| TAGAAAAGGAAACTGAATGC+TGG | - | chr1_3:28659090-28659109 | None:intergenic | 35.0% | |
| TTATGCCTGTATTGTACAGA+AGG | + | chr1_3:28659231-28659250 | Msa0112970:intron | 35.0% | |
| GATGAAGCATAACACATTCA+AGG | + | chr1_3:28659263-28659282 | Msa0112970:CDS | 35.0% | |
| ! | GCATAACACATTCAAGGTTT+TGG | + | chr1_3:28659269-28659288 | Msa0112970:CDS | 35.0% |
| TTATGTAACTAATCCTACCG+GGG | - | chr1_3:28659307-28659326 | None:intergenic | 35.0% | |
| CCAAAGGAGTTTATGAAAAG+GGG | + | chr1_3:28659399-28659418 | Msa0112970:CDS | 35.0% | |
| AAAGAATGCAAAGTGGAGAT+TGG | + | chr1_3:28659519-28659538 | Msa0112970:CDS | 35.0% | |
| !! | CTTGTCTTCCTCATTTTTGT+TGG | + | chr1_3:28659986-28660005 | Msa0112970:intron | 35.0% |
| CATTAATCAGTCATGCTACA+TGG | - | chr1_3:28660083-28660102 | None:intergenic | 35.0% | |
| !! | GGCAGAATTGATTTGCTTTA+TGG | - | chr1_3:28660421-28660440 | None:intergenic | 35.0% |
| AATGTATTGAAGAGACACAC+CGG | + | chr1_3:28660452-28660471 | Msa0112970:intron | 35.0% | |
| AACACTTCAGTAACAGTCAC+AGG | - | chr1_3:28656639-28656658 | None:intergenic | 40.0% | |
| ! | GTGACTGTTACTGAAGTGTT+AGG | + | chr1_3:28656639-28656658 | Msa0112970:five_prime_UTR | 40.0% |
| !! | TAGCTTTAAGCATTGCTCAG+AGG | + | chr1_3:28656692-28656711 | Msa0112970:five_prime_UTR | 40.0% |
| CATCCAAACTCGTTCCAAAA+AGG | + | chr1_3:28656780-28656799 | Msa0112970:intron | 40.0% | |
| GTATCCTCTGTTTCAGATCA+TGG | - | chr1_3:28657020-28657039 | None:intergenic | 40.0% | |
| ! | ATGTTGATGAGGACATGACA+TGG | + | chr1_3:28657100-28657119 | Msa0112970:five_prime_UTR | 40.0% |
| !! | TGAAATTTTGCTATGCGAGC+TGG | + | chr1_3:28657153-28657172 | Msa0112970:five_prime_UTR | 40.0% |
| ! | CAGGAACATAACTTGTAAGC+TGG | + | chr1_3:28657192-28657211 | Msa0112970:five_prime_UTR | 40.0% |
| AAATACCTTGAAACTGCTCC+AGG | - | chr1_3:28657299-28657318 | None:intergenic | 40.0% | |
| !! | CAAGCACTGAAACAGAACAA+TGG | + | chr1_3:28657567-28657586 | Msa0112970:intron | 40.0% |
| AGTTAATGCCTAAACTTGGC+AGG | + | chr1_3:28658115-28658134 | Msa0112970:intron | 40.0% | |
| TGTTACTACCTGCCAAGTTT+AGG | - | chr1_3:28658126-28658145 | None:intergenic | 40.0% | |
| ATGTCACAATCTTACGCCAA+TGG | + | chr1_3:28658223-28658242 | Msa0112970:CDS | 40.0% | |
| !! | AATATTGTATGGGTGGTGGA+TGG | + | chr1_3:28658448-28658467 | Msa0112970:CDS | 40.0% |
| !! | GTGGTGGATGGAAAATATTC+AGG | + | chr1_3:28658460-28658479 | Msa0112970:CDS | 40.0% |
| !!! | CTTTGGCTTTGGTTCGTTTT+TGG | - | chr1_3:28658574-28658593 | None:intergenic | 40.0% |
| ! | CCTAGTGATTTCTTTGGCTT+TGG | - | chr1_3:28658585-28658604 | None:intergenic | 40.0% |
| CCAAAGCCAAAGAAATCACT+AGG | + | chr1_3:28658582-28658601 | Msa0112970:CDS | 40.0% | |
| TAGGAGCCATCCAAAAGTAA+AGG | + | chr1_3:28658806-28658825 | Msa0112970:intron | 40.0% | |
| AGGAGCCATCCAAAAGTAAA+GGG | + | chr1_3:28658807-28658826 | Msa0112970:intron | 40.0% | |
| GTGTTATGCTTCATCACATC+AGG | - | chr1_3:28659258-28659277 | None:intergenic | 40.0% | |
| GTATTTGCAGAGTGTACCAA+AGG | + | chr1_3:28659383-28659402 | Msa0112970:intron | 40.0% | |
| ! | CCCCTTTTCATAAACTCCTT+TGG | - | chr1_3:28659402-28659421 | None:intergenic | 40.0% |
| TGAAAATGGGGAGAAAGTCA+TGG | + | chr1_3:28659445-28659464 | Msa0112970:CDS | 40.0% | |
| TCATGGTTCGTAAAAGTCAG+TGG | + | chr1_3:28659462-28659481 | Msa0112970:CDS | 40.0% | |
| AGTGGCTGCAAGTTTAGTAA+AGG | + | chr1_3:28659480-28659499 | Msa0112970:CDS | 40.0% | |
| GCTGCAAGTTTAGTAAAGGA+TGG | + | chr1_3:28659484-28659503 | Msa0112970:CDS | 40.0% | |
| ! | TTCACCATTGATGACAGCTT+GGG | - | chr1_3:28660179-28660198 | None:intergenic | 40.0% |
| ! | ATTCACCATTGATGACAGCT+TGG | - | chr1_3:28660180-28660199 | None:intergenic | 40.0% |
| CAAAGACATGGATGAAATCG+AGG | + | chr1_3:28660214-28660233 | Msa0112970:intron | 40.0% | |
| CTAAGGAAAACGTGTGACTT+TGG | + | chr1_3:28660359-28660378 | Msa0112970:intron | 40.0% | |
| ATGTATTGAAGAGACACACC+GGG | + | chr1_3:28660453-28660472 | Msa0112970:intron | 40.0% | |
| ! | GAAGTGTTAGGACCAGACAA+AGG | + | chr1_3:28656651-28656670 | Msa0112970:five_prime_UTR | 45.0% |
| !!! | CACCCTTTTTGGAACGAGTT+TGG | - | chr1_3:28656786-28656805 | None:intergenic | 45.0% |
| !! | ATTTTGCTATGCGAGCTGGT+TGG | + | chr1_3:28657157-28657176 | Msa0112970:five_prime_UTR | 45.0% |
| CTTGGCAGGTAGTAACAAAG+TGG | + | chr1_3:28658129-28658148 | Msa0112970:intron | 45.0% | |
| AGGTAGTAACAAAGTGGCCA+TGG | + | chr1_3:28658135-28658154 | Msa0112970:intron | 45.0% | |
| CAAAGTGGCCATGGTAAAGA+AGG | + | chr1_3:28658144-28658163 | Msa0112970:CDS | 45.0% | |
| GGAACTGCAACAATAAGGGT+TGG | + | chr1_3:28658375-28658394 | Msa0112970:CDS | 45.0% | |
| !! | GGTTGGTAATGAAAGGAGTG+TGG | + | chr1_3:28658392-28658411 | Msa0112970:CDS | 45.0% |
| CAGGACCTTCTGTACAATAC+AGG | - | chr1_3:28659239-28659258 | None:intergenic | 45.0% | |
| TTTGGTGAAGAACAATGCCC+CGG | + | chr1_3:28659287-28659306 | Msa0112970:CDS | 45.0% | |
| AGGCTGACACGATACTTCTT+AGG | - | chr1_3:28659748-28659767 | None:intergenic | 45.0% | |
| !! | AGAAGTATCGTGTCAGCCTT+TGG | + | chr1_3:28659749-28659768 | Msa0112970:three_prime_UTR | 45.0% |
| GCTTGGGTGTGGTATGTTTA+AGG | - | chr1_3:28660163-28660182 | None:intergenic | 45.0% | |
| GAGGAAATATGTGGAGAACC+CGG | - | chr1_3:28660474-28660493 | None:intergenic | 45.0% | |
| !! | AAAAATAATAAATACTTAAT+TGG | + | chr1_3:28658042-28658061 | Msa0112970:intron | 5.0% |
| !! | ATTATATATATTTCTTAATT+TGG | + | chr1_3:28658917-28658936 | Msa0112970:intron | 5.0% |
| AAGAGTAGCAGCTCTGCAAG+AGG | + | chr1_3:28656724-28656743 | Msa0112970:five_prime_UTR | 50.0% | |
| TGGTTGGAAGTCGTTTGTGC+AGG | + | chr1_3:28657173-28657192 | Msa0112970:five_prime_UTR | 50.0% | |
| GGCATGGTTCCTTTGTAGCT+GGG | - | chr1_3:28657278-28657297 | None:intergenic | 50.0% | |
| AGGCATGGTTCCTTTGTAGC+TGG | - | chr1_3:28657279-28657298 | None:intergenic | 50.0% | |
| AGCTACAAAGGAACCATGCC+TGG | + | chr1_3:28657278-28657297 | Msa0112970:CDS | 50.0% | |
| ! | CATTGATGACAGCTTGGGTG+TGG | - | chr1_3:28660174-28660193 | None:intergenic | 50.0% |
| CACACCCAAGCTGTCATCAA+TGG | + | chr1_3:28660172-28660191 | Msa0112970:intron | 50.0% | |
| AGCAGCTCTGCAAGAGGCTA+AGG | + | chr1_3:28656730-28656749 | Msa0112970:five_prime_UTR | 55.0% | |
| CCTTGAAACTGCTCCAGGCA+TGG | - | chr1_3:28657294-28657313 | None:intergenic | 55.0% | |
| CCATGCCTGGAGCAGTTTCA+AGG | + | chr1_3:28657291-28657310 | Msa0112970:CDS | 55.0% | |
| GGAGTGTGGAAGTGAGTGTG+AGG | + | chr1_3:28658406-28658425 | Msa0112970:CDS | 55.0% | |
| GTGAAGAACAATGCCCCGGT+AGG | + | chr1_3:28659291-28659310 | Msa0112970:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 28656633 | 28660673 | 28656633 | ID=Msa0112970;Name=Msa0112970 |
| chr1_3 | mRNA | 28656633 | 28660673 | 28656633 | ID=Msa0112970-mRNA-1;Parent=Msa0112970;Name=Msa0112970-mRNA-1;_AED=0.11;_eAED=0.11;_QI=341|0.5|0.71|1|0.66|0.42|7|222|257 |
| chr1_3 | exon | 28656633 | 28656772 | 28656633 | ID=Msa0112970-mRNA-1:exon:9416;Parent=Msa0112970-mRNA-1 |
| chr1_3 | exon | 28657033 | 28657312 | 28657033 | ID=Msa0112970-mRNA-1:exon:9417;Parent=Msa0112970-mRNA-1 |
| chr1_3 | exon | 28658137 | 28658255 | 28658137 | ID=Msa0112970-mRNA-1:exon:9418;Parent=Msa0112970-mRNA-1 |
| chr1_3 | exon | 28658330 | 28658603 | 28658330 | ID=Msa0112970-mRNA-1:exon:9419;Parent=Msa0112970-mRNA-1 |
| chr1_3 | exon | 28659250 | 28659308 | 28659250 | ID=Msa0112970-mRNA-1:exon:9420;Parent=Msa0112970-mRNA-1 |
| chr1_3 | exon | 28659393 | 28659798 | 28659393 | ID=Msa0112970-mRNA-1:exon:9421;Parent=Msa0112970-mRNA-1 |
| chr1_3 | exon | 28660615 | 28660673 | 28660615 | ID=Msa0112970-mRNA-1:exon:9422;Parent=Msa0112970-mRNA-1 |
| chr1_3 | five_prime_UTR | 28656633 | 28656772 | 28656633 | ID=Msa0112970-mRNA-1:five_prime_utr;Parent=Msa0112970-mRNA-1 |
| chr1_3 | five_prime_UTR | 28657033 | 28657233 | 28657033 | ID=Msa0112970-mRNA-1:five_prime_utr;Parent=Msa0112970-mRNA-1 |
| chr1_3 | CDS | 28657234 | 28657312 | 28657234 | ID=Msa0112970-mRNA-1:cds;Parent=Msa0112970-mRNA-1 |
| chr1_3 | CDS | 28658137 | 28658255 | 28658137 | ID=Msa0112970-mRNA-1:cds;Parent=Msa0112970-mRNA-1 |
| chr1_3 | CDS | 28658330 | 28658603 | 28658330 | ID=Msa0112970-mRNA-1:cds;Parent=Msa0112970-mRNA-1 |
| chr1_3 | CDS | 28659250 | 28659308 | 28659250 | ID=Msa0112970-mRNA-1:cds;Parent=Msa0112970-mRNA-1 |
| chr1_3 | CDS | 28659393 | 28659635 | 28659393 | ID=Msa0112970-mRNA-1:cds;Parent=Msa0112970-mRNA-1 |
| chr1_3 | three_prime_UTR | 28659636 | 28659798 | 28659636 | ID=Msa0112970-mRNA-1:three_prime_utr;Parent=Msa0112970-mRNA-1 |
| chr1_3 | three_prime_UTR | 28660615 | 28660673 | 28660615 | ID=Msa0112970-mRNA-1:three_prime_utr;Parent=Msa0112970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
