Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112980 | KEH26464.1 | 75.056 | 449 | 94 | 5 | 36 | 477 | 33 | 470 | 0.0 | 674 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112980 | sp|Q8L3W1|VRN1_ARATH | 23.659 | 317 | 209 | 10 | 37 | 325 | 22 | 333 | 1.74e-17 | 87.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112980 | A0A072U9K2 | 75.056 | 449 | 94 | 5 | 36 | 477 | 33 | 470 | 0.0 | 674 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0112980 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112980 | MtrunA17_Chr6g0476171 | 65.141 | 284 | 56 | 4 | 197 | 477 | 2 | 245 | 4.36e-122 | 357 |
| Msa0112980 | MtrunA17_Chr1g0163141 | 90.062 | 161 | 14 | 1 | 36 | 196 | 10 | 168 | 1.20e-94 | 285 |
| Msa0112980 | MtrunA17_Chr6g0476181 | 77.640 | 161 | 27 | 1 | 36 | 196 | 1 | 152 | 1.71e-81 | 250 |
| Msa0112980 | MtrunA17_Chr1g0163131 | 42.484 | 306 | 130 | 10 | 36 | 327 | 33 | 306 | 6.44e-67 | 218 |
| Msa0112980 | MtrunA17_Chr1g0163131 | 41.667 | 84 | 47 | 1 | 390 | 473 | 221 | 302 | 6.03e-13 | 69.7 |
| Msa0112980 | MtrunA17_Chr1g0163181 | 33.406 | 461 | 235 | 16 | 37 | 477 | 21 | 429 | 1.74e-66 | 221 |
| Msa0112980 | MtrunA17_Chr1g0163101 | 64.596 | 161 | 34 | 2 | 36 | 196 | 32 | 169 | 3.68e-65 | 209 |
| Msa0112980 | MtrunA17_Chr1g0162161 | 65.644 | 163 | 35 | 3 | 34 | 196 | 1 | 142 | 1.88e-64 | 206 |
| Msa0112980 | MtrunA17_Chr1g0163201 | 32.829 | 463 | 229 | 14 | 37 | 495 | 19 | 403 | 3.10e-58 | 198 |
| Msa0112980 | MtrunA17_Chr1g0163081 | 60.248 | 161 | 38 | 3 | 34 | 194 | 3 | 137 | 5.88e-55 | 181 |
| Msa0112980 | MtrunA17_Chr1g0163161 | 61.486 | 148 | 36 | 3 | 49 | 196 | 1 | 127 | 7.62e-52 | 172 |
| Msa0112980 | MtrunA17_Chr1g0163261 | 38.511 | 309 | 145 | 10 | 37 | 339 | 25 | 294 | 1.33e-51 | 177 |
| Msa0112980 | MtrunA17_Chr1g0163251 | 37.829 | 304 | 155 | 8 | 37 | 339 | 21 | 291 | 6.61e-50 | 176 |
| Msa0112980 | MtrunA17_Chr1g0163121 | 56.522 | 161 | 38 | 3 | 36 | 196 | 10 | 138 | 7.20e-50 | 167 |
| Msa0112980 | MtrunA17_Chr1g0163231 | 38.567 | 293 | 137 | 8 | 37 | 326 | 25 | 277 | 1.16e-49 | 172 |
| Msa0112980 | MtrunA17_Chr1g0171611 | 34.576 | 295 | 134 | 9 | 37 | 326 | 25 | 265 | 1.49e-40 | 147 |
| Msa0112980 | MtrunA17_Chr1g0163111 | 36.364 | 253 | 124 | 10 | 226 | 477 | 12 | 228 | 6.39e-38 | 139 |
| Msa0112980 | MtrunA17_Chr1g0163151 | 32.967 | 273 | 131 | 7 | 205 | 477 | 1 | 221 | 6.01e-35 | 130 |
| Msa0112980 | MtrunA17_Chr1g0162151 | 33.068 | 251 | 92 | 8 | 229 | 473 | 23 | 203 | 3.32e-30 | 117 |
| Msa0112980 | MtrunA17_Chr1g0208771 | 25.263 | 475 | 310 | 16 | 26 | 473 | 2 | 458 | 3.74e-28 | 117 |
| Msa0112980 | MtrunA17_Chr7g0233561 | 29.236 | 301 | 186 | 6 | 37 | 330 | 34 | 314 | 7.72e-28 | 114 |
| Msa0112980 | MtrunA17_Chr3g0131891 | 30.592 | 304 | 170 | 11 | 36 | 330 | 34 | 305 | 7.91e-28 | 114 |
| Msa0112980 | MtrunA17_Chr1g0163091 | 47.368 | 133 | 64 | 5 | 209 | 339 | 2 | 130 | 1.04e-27 | 108 |
| Msa0112980 | MtrunA17_Chr7g0233531 | 28.571 | 301 | 173 | 9 | 36 | 330 | 1 | 265 | 3.35e-26 | 108 |
| Msa0112980 | MtrunA17_Chr3g0103171 | 30.619 | 307 | 158 | 14 | 33 | 327 | 2 | 265 | 6.72e-26 | 106 |
| Msa0112980 | MtrunA17_Chr7g0233541 | 28.571 | 301 | 190 | 7 | 36 | 330 | 1 | 282 | 1.06e-25 | 107 |
| Msa0112980 | MtrunA17_Chr1g0163241 | 37.662 | 154 | 84 | 3 | 17 | 168 | 2 | 145 | 4.59e-25 | 101 |
| Msa0112980 | MtrunA17_Chr8g0390841 | 25.051 | 491 | 292 | 18 | 37 | 478 | 55 | 518 | 6.63e-25 | 108 |
| Msa0112980 | MtrunA17_Chr4g0067431 | 25.879 | 313 | 202 | 10 | 37 | 339 | 31 | 323 | 1.89e-23 | 101 |
| Msa0112980 | MtrunA17_Chr1g0163071 | 27.508 | 309 | 196 | 9 | 36 | 333 | 1 | 292 | 2.73e-23 | 100 |
| Msa0112980 | MtrunA17_Chr7g0233521 | 28.431 | 306 | 167 | 9 | 36 | 330 | 1 | 265 | 9.99e-23 | 98.2 |
| Msa0112980 | MtrunA17_Chr1g0163221 | 25.974 | 308 | 191 | 8 | 37 | 339 | 27 | 302 | 6.83e-21 | 94.4 |
| Msa0112980 | MtrunA17_Chr1g0163191 | 35.385 | 130 | 82 | 2 | 37 | 164 | 21 | 150 | 2.78e-18 | 82.0 |
| Msa0112980 | MtrunA17_Chr7g0233571 | 29.646 | 226 | 133 | 7 | 20 | 242 | 15 | 217 | 1.71e-17 | 81.6 |
| Msa0112980 | MtrunA17_Chr3g0103181 | 27.723 | 303 | 158 | 13 | 37 | 327 | 26 | 279 | 2.42e-17 | 82.4 |
| Msa0112980 | MtrunA17_Chr5g0419201 | 35.772 | 123 | 72 | 4 | 36 | 153 | 31 | 151 | 6.49e-17 | 79.0 |
| Msa0112980 | MtrunA17_Chr1g0154111 | 23.684 | 342 | 213 | 10 | 5 | 314 | 21 | 346 | 1.95e-16 | 82.4 |
| Msa0112980 | MtrunA17_Chr1g0154131 | 25.237 | 317 | 193 | 14 | 12 | 316 | 174 | 458 | 7.27e-16 | 80.1 |
| Msa0112980 | MtrunA17_Chr3g0103151 | 35.606 | 132 | 71 | 5 | 28 | 156 | 19 | 139 | 3.44e-14 | 70.5 |
| Msa0112980 | MtrunA17_Chr3g0103191 | 31.336 | 217 | 112 | 12 | 37 | 249 | 26 | 209 | 6.80e-14 | 71.6 |
| Msa0112980 | MtrunA17_Chr3g0103201 | 29.249 | 253 | 136 | 13 | 79 | 326 | 5 | 219 | 1.09e-13 | 70.5 |
| Msa0112980 | MtrunA17_Chr5g0419211 | 35.870 | 92 | 58 | 1 | 248 | 339 | 11 | 101 | 3.72e-13 | 65.9 |
| Msa0112980 | MtrunA17_Chr1g0154071 | 24.217 | 351 | 231 | 13 | 12 | 334 | 147 | 490 | 2.57e-12 | 68.9 |
| Msa0112980 | MtrunA17_Chr1g0154211 | 23.100 | 329 | 199 | 12 | 37 | 314 | 38 | 363 | 4.63e-12 | 67.8 |
| Msa0112980 | MtrunA17_Chr1g0163061 | 36.607 | 112 | 55 | 3 | 21 | 116 | 3 | 114 | 1.70e-11 | 64.7 |
| Msa0112980 | MtrunA17_Chr1g0154101 | 29.885 | 174 | 106 | 6 | 12 | 176 | 174 | 340 | 5.18e-11 | 65.5 |
| Msa0112980 | MtrunA17_Chr1g0154191 | 21.019 | 314 | 205 | 10 | 37 | 315 | 38 | 343 | 5.97e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0112980 | AT3G18990.1 | 23.659 | 317 | 209 | 10 | 37 | 325 | 22 | 333 | 1.77e-18 | 87.4 |
| Msa0112980 | AT3G18990.2 | 23.659 | 317 | 209 | 10 | 37 | 325 | 22 | 333 | 3.19e-18 | 87.0 |
Find 98 sgRNAs with CRISPR-Local
Find 283 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTTAAGTAGACTGTTTA+AGG | 0.057234 | 1_3:-28666259 | Msa0112980:intron |
| CTGACCCATTTGGAAGTTTA+AGG | 0.139491 | 1_3:+28665931 | None:intergenic |
| ATGGAATATGCGGGCAATTT+TGG | 0.164513 | 1_3:-28662872 | Msa0112980:CDS |
| GAATTTACATGAGATGTTTA+AGG | 0.185675 | 1_3:-28662698 | Msa0112980:CDS |
| TTTCTGCTCTGAATCATCTT+AGG | 0.264285 | 1_3:+28662059 | None:intergenic |
| TTTGGAAGTTTAAGGGATAT+TGG | 0.281020 | 1_3:+28665939 | None:intergenic |
| TGCAACGCGGTGATGGTATT+TGG | 0.284893 | 1_3:-28665890 | Msa0112980:CDS |
| TTTATTATCATTAATGGAAT+TGG | 0.304509 | 1_3:-28666355 | None:intergenic |
| AGTTTAAGGGATATTGGATT+TGG | 0.337634 | 1_3:+28665945 | None:intergenic |
| CTCCGGGCCTGGTTCCTTTG+TGG | 0.344484 | 1_3:+28664440 | None:intergenic |
| GGAATTTCGTAGAGAGGTAT+TGG | 0.365580 | 1_3:-28665977 | Msa0112980:CDS |
| TTATCACCTTCAACATGATA+TGG | 0.368518 | 1_3:+28665103 | None:intergenic |
| AAGAAGCATGGTATATTTAG+TGG | 0.374789 | 1_3:-28662542 | Msa0112980:CDS |
| GCTCCGAGCGATTCATCATT+TGG | 0.379893 | 1_3:-28666326 | Msa0112980:CDS |
| GGCCTGGTTCCTTTGTGGTT+GGG | 0.379936 | 1_3:+28664445 | None:intergenic |
| AATCTGACCCTCCTTTGTAT+TGG | 0.385935 | 1_3:+28665811 | None:intergenic |
| ATGGTATTTGGCTTCAGAAT+TGG | 0.387348 | 1_3:-28665878 | Msa0112980:CDS |
| TATAATGAACATCTCGACTA+TGG | 0.388378 | 1_3:-28662467 | Msa0112980:CDS |
| GGGCCTGGTTCCTTTGTGGT+TGG | 0.394485 | 1_3:+28664444 | None:intergenic |
| GGTCAGCATGCAAAATGAAT+TGG | 0.396575 | 1_3:-28665914 | Msa0112980:CDS |
| TCTTGATGAACCTTGAGAAT+TGG | 0.396663 | 1_3:+28662144 | None:intergenic |
| TGACCCATTTGGAAGTTTAA+GGG | 0.399923 | 1_3:+28665932 | None:intergenic |
| CCTTGAAACTTCTCCGGGCC+TGG | 0.411612 | 1_3:+28664429 | None:intergenic |
| GACAACACCAGTAAAAGATA+TGG | 0.416359 | 1_3:-28662891 | Msa0112980:CDS |
| AACCACAAAGGAACCAGGCC+CGG | 0.431169 | 1_3:-28664442 | Msa0112980:CDS |
| ATTCAGTGGAGTTGAGAGTA+GGG | 0.448522 | 1_3:-28662517 | Msa0112980:CDS |
| ATATCCCTTAAACTTCCAAA+TGG | 0.449227 | 1_3:-28665936 | Msa0112980:CDS |
| TGGAGACACTTGCTTGTTTG+AGG | 0.451137 | 1_3:-28662393 | Msa0112980:CDS |
| TTAGAAGTGTTGGTGAGGAC+AGG | 0.455257 | 1_3:-28664626 | Msa0112980:CDS |
| GCAATACCTTGAAACTTCTC+CGG | 0.461040 | 1_3:+28664423 | None:intergenic |
| TGCTTCTTCAACAGCTCACT+TGG | 0.461685 | 1_3:+28662557 | None:intergenic |
| ATAGTAATTGTGAATGAAAG+TGG | 0.468831 | 1_3:+28664471 | None:intergenic |
| TGATGAACCTTGAGAATTGG+AGG | 0.473528 | 1_3:+28662147 | None:intergenic |
| GACTATGGTTGGTTCACTAA+AGG | 0.474605 | 1_3:-28662452 | Msa0112980:CDS |
| TACCTCTCTACGAAATTCCT+TGG | 0.476007 | 1_3:+28665981 | None:intergenic |
| AAGGAACATGAGTTGAAAGT+TGG | 0.478819 | 1_3:-28664528 | Msa0112980:CDS |
| TGAGAGTAGGGGAAGGAACA+TGG | 0.483751 | 1_3:-28662505 | Msa0112980:CDS |
| TTATCGCCATATCATGTTGA+AGG | 0.488274 | 1_3:-28665109 | Msa0112980:CDS |
| TGGAGGAAGCATCATACCTT+AGG | 0.491721 | 1_3:+28662164 | None:intergenic |
| AGTGAAACTAGGACTCTCAT+TGG | 0.512039 | 1_3:+28665138 | None:intergenic |
| AGTAGCAATGCCATTTGAGT+TGG | 0.513443 | 1_3:+28665602 | None:intergenic |
| TTCGAAAACCAACTAGGTAT+CGG | 0.513588 | 1_3:+28664687 | None:intergenic |
| AGAGATTGCAAAGTAAAGAC+TGG | 0.515563 | 1_3:-28662413 | Msa0112980:CDS |
| AATTCAGTGGAGTTGAGAGT+AGG | 0.518002 | 1_3:-28662518 | Msa0112980:CDS |
| GTTGCTTACTGTTAATGTTG+TGG | 0.518922 | 1_3:+28662081 | None:intergenic |
| TAATGGAAACACAGGAGGCA+TGG | 0.520474 | 1_3:-28665218 | Msa0112980:CDS |
| TGTTGAAGGTGATAATAGAT+TGG | 0.520882 | 1_3:-28665095 | Msa0112980:intron |
| TATCCCTTAAACTTCCAAAT+GGG | 0.521322 | 1_3:-28665935 | Msa0112980:CDS |
| TGTGCAAAATCATGTGTTCA+AGG | 0.521657 | 1_3:-28662363 | Msa0112980:intron |
| TATTCTTTCGAAAACCAACT+AGG | 0.522446 | 1_3:+28664681 | None:intergenic |
| CCAGGCCCGGAGAAGTTTCA+AGG | 0.523708 | 1_3:-28664429 | Msa0112980:intron |
| CAATACCTTGAAACTTCTCC+GGG | 0.525380 | 1_3:+28664424 | None:intergenic |
| ACCACTTGTGCTCAATCACT+TGG | 0.526463 | 1_3:-28666291 | Msa0112980:CDS |
| TTCAGTGGAGTTGAGAGTAG+GGG | 0.529294 | 1_3:-28662516 | Msa0112980:CDS |
| TGAAACAGCCGATACCTAGT+TGG | 0.537742 | 1_3:-28664695 | Msa0112980:intron |
| AAGGCAACAATTAGAAGTGT+TGG | 0.542696 | 1_3:-28664636 | Msa0112980:CDS |
| AATGGAAACACAGGAGGCAT+GGG | 0.543418 | 1_3:-28665217 | Msa0112980:CDS |
| TACATGAATGAGTTATTGCA+AGG | 0.543984 | 1_3:-28664660 | Msa0112980:CDS |
| ATGAACATCTCGACTATGGT+TGG | 0.544359 | 1_3:-28662463 | Msa0112980:CDS |
| GTCAGCATGCAAAATGAATT+GGG | 0.544595 | 1_3:-28665913 | Msa0112980:CDS |
| GTGAAACTAGGACTCTCATT+GGG | 0.547777 | 1_3:+28665139 | None:intergenic |
| TATATTTAGTGGAAATTCAG+TGG | 0.549056 | 1_3:-28662531 | Msa0112980:CDS |
| AAACAGTCTACTTAAAGAGT+TGG | 0.551219 | 1_3:+28666263 | None:intergenic |
| ACCAAGTGATTGAGCACAAG+TGG | 0.555338 | 1_3:+28666290 | None:intergenic |
| ACTACTGCTGCTACACCTCA+AGG | 0.557213 | 1_3:-28665582 | Msa0112980:CDS |
| AGAATTGGAAGAGGTTTGCA+TGG | 0.557550 | 1_3:-28665863 | Msa0112980:CDS |
| ATCCCAACCACAAAGGAACC+AGG | 0.559337 | 1_3:-28664447 | Msa0112980:CDS |
| TAGAAGTGTTGGTGAGGACA+GGG | 0.562489 | 1_3:-28664625 | Msa0112980:CDS |
| TTTGGCTTCAGAATTGGAAG+AGG | 0.566576 | 1_3:-28665872 | Msa0112980:CDS |
| GATAATTTGACAGTGAAACT+AGG | 0.566923 | 1_3:+28665127 | None:intergenic |
| GTAAAAGATATGGAATATGC+GGG | 0.570556 | 1_3:-28662881 | Msa0112980:CDS |
| GATGCTTCCTCCAATTCTCA+AGG | 0.572727 | 1_3:-28662154 | Msa0112980:CDS |
| ATGGTTGGTTCACTAAAGGT+TGG | 0.573713 | 1_3:-28662448 | Msa0112980:CDS |
| AAAATCAGAAAGCAGTCCTA+AGG | 0.577450 | 1_3:-28662180 | Msa0112980:intron |
| TTGTGAATGTTAGTCCCTTG+AGG | 0.580089 | 1_3:+28665567 | None:intergenic |
| AATTGGGTGCAACGCGGTGA+TGG | 0.587564 | 1_3:-28665897 | Msa0112980:CDS |
| TGTGCTTGCAGATGATTCCA+AGG | 0.587783 | 1_3:-28665998 | Msa0112980:intron |
| GCAGAGGCTAATGGAAACAC+AGG | 0.596384 | 1_3:-28665226 | Msa0112980:intron |
| AACAATTAGAAGTGTTGGTG+AGG | 0.601806 | 1_3:-28664631 | Msa0112980:CDS |
| AGTAAAAGATATGGAATATG+CGG | 0.604042 | 1_3:-28662882 | Msa0112980:CDS |
| TTCCAAGGAATTTCGTAGAG+AGG | 0.604264 | 1_3:-28665983 | Msa0112980:CDS |
| TGATTAAAGATGATCGAGGA+AGG | 0.610178 | 1_3:+28662116 | None:intergenic |
| CCACCAAATGATGAATCGCT+CGG | 0.617040 | 1_3:+28666323 | None:intergenic |
| AGTGAGCTGTTGAAGAAGCA+TGG | 0.617628 | 1_3:-28662554 | Msa0112980:CDS |
| TTTGCATGGTCTCTCCGATG+TGG | 0.621761 | 1_3:-28665849 | Msa0112980:CDS |
| TACTATTATCCCAACCACAA+AGG | 0.624953 | 1_3:-28664454 | Msa0112980:CDS |
| CCGAGCGATTCATCATTTGG+TGG | 0.625693 | 1_3:-28666323 | Msa0112980:CDS |
| GTGTTGGTGAGGACAGGGCA+TGG | 0.626789 | 1_3:-28664620 | Msa0112980:CDS |
| GAATGAGTTATTGCAAGGGA+AGG | 0.643476 | 1_3:-28664655 | Msa0112980:CDS |
| GTGGAGTTGAGAGTAGGGGA+AGG | 0.647557 | 1_3:-28662512 | Msa0112980:CDS |
| CTACTGCTGCTACACCTCAA+GGG | 0.654975 | 1_3:-28665581 | Msa0112980:CDS |
| ACATGAATGAGTTATTGCAA+GGG | 0.661417 | 1_3:-28664659 | Msa0112980:CDS |
| AAACTAAAAGATCTCCACAT+CGG | 0.682646 | 1_3:+28665835 | None:intergenic |
| GAGGCTAATGGAAACACAGG+AGG | 0.702704 | 1_3:-28665223 | Msa0112980:CDS |
| TGGACATGTGCAGAAAACCA+AGG | 0.707757 | 1_3:-28662932 | Msa0112980:intron |
| TTGAGCACAAGTGGTTAACG+AGG | 0.726185 | 1_3:+28666299 | None:intergenic |
| GCTTTGATTAAAGATGATCG+AGG | 0.729435 | 1_3:+28662112 | None:intergenic |
| AAAATGAATTGGGTGCAACG+CGG | 0.811094 | 1_3:-28665903 | Msa0112980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTTTGTAATAAATTAATTA+AGG | + | chr1_3:28664694-28664713 | None:intergenic | 10.0% |
| !!! | TAAAATATACAAATTTTTCA+AGG | - | chr1_3:28665259-28665278 | Msa0112980:intron | 10.0% |
| !! | TAAACAGATGAATAAATAAA+AGG | + | chr1_3:28662930-28662949 | None:intergenic | 15.0% |
| !! | TTTATTTATTCATCTGTTTA+TGG | - | chr1_3:28662930-28662949 | Msa0112980:intron | 15.0% |
| !! | TTATTTATTCATCTGTTTAT+GGG | - | chr1_3:28662931-28662950 | Msa0112980:intron | 15.0% |
| !!! | CAAATGTGTAAAATATTTTA+AGG | - | chr1_3:28664125-28664144 | Msa0112980:intron | 15.0% |
| !!! | ATATTTTAAGGTTTAAATCT+TGG | - | chr1_3:28664137-28664156 | Msa0112980:intron | 15.0% |
| !!! | CTATTTTATTTTACAGTTAT+TGG | + | chr1_3:28665076-28665095 | None:intergenic | 15.0% |
| !!! | CTAAGATTAATTTTTATACA+TGG | - | chr1_3:28665318-28665337 | Msa0112980:intron | 15.0% |
| !! | AAAACCAATGAGTATAAATT+TGG | + | chr1_3:28662390-28662409 | None:intergenic | 20.0% |
| !!! | AATTTGTATGGATTAAAAAG+TGG | + | chr1_3:28663017-28663036 | None:intergenic | 20.0% |
| !!! | ATGTACTTATGTAATTTGTA+TGG | + | chr1_3:28663029-28663048 | None:intergenic | 20.0% |
| !! | AGAATATACGTAAATAAAGT+GGG | + | chr1_3:28663067-28663086 | None:intergenic | 20.0% |
| !! | AAGAATATACGTAAATAAAG+TGG | + | chr1_3:28663068-28663087 | None:intergenic | 20.0% |
| !! | TATTAAAAAGAGAGTCATTT+GGG | + | chr1_3:28663453-28663472 | None:intergenic | 20.0% |
| !! | TTAAGATTACTAGATCAAAA+AGG | - | chr1_3:28664199-28664218 | Msa0112980:intron | 20.0% |
| !!! | GAGAAAGAAGTTTATTTTAA+TGG | + | chr1_3:28664668-28664687 | None:intergenic | 20.0% |
| !!! | GATTTTAGTCATTCTAATAA+TGG | - | chr1_3:28665183-28665202 | Msa0112980:CDS | 20.0% |
| !! | AAAGAAAACAACATAGTTTA+AGG | + | chr1_3:28665666-28665685 | None:intergenic | 20.0% |
| ! | AAAACTAAGTTCAAATACCT+AGG | + | chr1_3:28662315-28662334 | None:intergenic | 25.0% |
| ! | CAATCCAAATTTATACTCAT+TGG | - | chr1_3:28662383-28662402 | Msa0112980:CDS | 25.0% |
| !!! | CTTTTAGTTTTCCAATACAA+AGG | - | chr1_3:28662592-28662611 | Msa0112980:intron | 25.0% |
| !! | CAAAATTTGAGATGAACTAA+GGG | + | chr1_3:28662978-28662997 | None:intergenic | 25.0% |
| ! | TATTACAGAAAAAGTAGTAC+AGG | + | chr1_3:28663352-28663371 | None:intergenic | 25.0% |
| ! | ATTAAAAAGAGAGTCATTTG+GGG | + | chr1_3:28663452-28663471 | None:intergenic | 25.0% |
| ! | CTATTAAAAAGAGAGTCATT+TGG | + | chr1_3:28663454-28663473 | None:intergenic | 25.0% |
| ! | ACTAACAGAAAACATATTCA+TGG | - | chr1_3:28663491-28663510 | Msa0112980:intron | 25.0% |
| ! | ATAGTAATTGTGAATGAAAG+TGG | + | chr1_3:28663946-28663965 | None:intergenic | 25.0% |
| !! | TTTGATTGATTGTAGTTTGT+TGG | + | chr1_3:28664109-28664128 | None:intergenic | 25.0% |
| ! | ATGTTAATGTTACTGTCATT+AGG | - | chr1_3:28664288-28664307 | Msa0112980:intron | 25.0% |
| ! | TGTTAATGTTACTGTCATTA+GGG | - | chr1_3:28664289-28664308 | Msa0112980:intron | 25.0% |
| !!! | ATTGTCATGTTTACCTTTTT+TGG | - | chr1_3:28664622-28664641 | Msa0112980:CDS | 25.0% |
| ! | GAGATATGAAAATCCAAAAA+AGG | + | chr1_3:28664638-28664657 | None:intergenic | 25.0% |
| ! | AATAGAAAAAATGACTGATG+TGG | - | chr1_3:28665091-28665110 | Msa0112980:intron | 25.0% |
| ! | TTAAACACACTATCATCTAT+TGG | + | chr1_3:28665118-28665137 | None:intergenic | 25.0% |
| !! | AATAGATGATAGTGTGTTTA+AGG | - | chr1_3:28665117-28665136 | Msa0112980:CDS | 25.0% |
| !! | ATAGATGATAGTGTGTTTAA+GGG | - | chr1_3:28665118-28665137 | Msa0112980:CDS | 25.0% |
| ! | AGTAAAAGATATGGAATATG+CGG | - | chr1_3:28665532-28665551 | Msa0112980:CDS | 25.0% |
| ! | GAATTTACATGAGATGTTTA+AGG | - | chr1_3:28665716-28665735 | Msa0112980:CDS | 25.0% |
| !! | TTTTATAACATCATCAGACA+AGG | - | chr1_3:28665740-28665759 | Msa0112980:CDS | 25.0% |
| ! | TTTGTTCATATATATGCAGT+TGG | - | chr1_3:28665826-28665845 | Msa0112980:CDS | 25.0% |
| ! | TATATTTAGTGGAAATTCAG+TGG | - | chr1_3:28665883-28665902 | Msa0112980:CDS | 25.0% |
| !!! | TTGCTTGTTTTGTCATTTTA+AGG | - | chr1_3:28666093-28666112 | Msa0112980:intron | 25.0% |
| !!! | TGCTTGTTTTGTCATTTTAA+GGG | - | chr1_3:28666094-28666113 | Msa0112980:intron | 25.0% |
| ! | TTTGTTTCATTTAAACCAAC+GGG | + | chr1_3:28666184-28666203 | None:intergenic | 25.0% |
| !! | CTTTGTTTCATTTAAACCAA+CGG | + | chr1_3:28666185-28666204 | None:intergenic | 25.0% |
| AAACAGTCTACTTAAAGAGT+TGG | + | chr1_3:28662154-28662173 | None:intergenic | 30.0% | |
| CTCTTTAAGTAGACTGTTTA+AGG | - | chr1_3:28662155-28662174 | Msa0112980:CDS | 30.0% | |
| AGCATGATCAAAACAGTATT+GGG | + | chr1_3:28662209-28662228 | None:intergenic | 30.0% | |
| AAGCATGATCAAAACAGTAT+TGG | + | chr1_3:28662210-28662229 | None:intergenic | 30.0% | |
| GTGTAATATTTCCACATATC+TGG | - | chr1_3:28662285-28662304 | Msa0112980:intron | 30.0% | |
| AGTTTAAGGGATATTGGATT+TGG | + | chr1_3:28662472-28662491 | None:intergenic | 30.0% | |
| TTTGGAAGTTTAAGGGATAT+TGG | + | chr1_3:28662478-28662497 | None:intergenic | 30.0% | |
| ATATCCCTTAAACTTCCAAA+TGG | - | chr1_3:28662478-28662497 | Msa0112980:CDS | 30.0% | |
| TATCCCTTAAACTTCCAAAT+GGG | - | chr1_3:28662479-28662498 | Msa0112980:CDS | 30.0% | |
| AAACTAAAAGATCTCCACAT+CGG | + | chr1_3:28662582-28662601 | None:intergenic | 30.0% | |
| !! | TTAGTTTTCCAATACAAAGG+AGG | - | chr1_3:28662595-28662614 | Msa0112980:intron | 30.0% |
| ! | TAGTTTTCCAATACAAAGGA+GGG | - | chr1_3:28662596-28662615 | Msa0112980:intron | 30.0% |
| !! | TTTGTATTTTCAGTGTCACT+AGG | + | chr1_3:28662769-28662788 | None:intergenic | 30.0% |
| AAAAAGAGAACCAACTCAAA+TGG | - | chr1_3:28662802-28662821 | Msa0112980:intron | 30.0% | |
| ! | CCAAAATTTGAGATGAACTA+AGG | + | chr1_3:28662979-28662998 | None:intergenic | 30.0% |
| ! | CCTTAGTTCATCTCAAATTT+TGG | - | chr1_3:28662976-28662995 | Msa0112980:intron | 30.0% |
| ! | AACTCTTTTCAGCATTTGAA+AGG | + | chr1_3:28663157-28663176 | None:intergenic | 30.0% |
| !!! | GAGTTTTTAAAGTTTTGCAG+AGG | - | chr1_3:28663172-28663191 | Msa0112980:intron | 30.0% |
| GATAATTTGACAGTGAAACT+AGG | + | chr1_3:28663290-28663309 | None:intergenic | 30.0% | |
| TTATCACCTTCAACATGATA+TGG | + | chr1_3:28663314-28663333 | None:intergenic | 30.0% | |
| TGTTGAAGGTGATAATAGAT+TGG | - | chr1_3:28663319-28663338 | Msa0112980:intron | 30.0% | |
| TCAATACATTCAGTTCCTAT+AGG | + | chr1_3:28663415-28663434 | None:intergenic | 30.0% | |
| TTGAAGATCAGAATAACTAG+CGG | - | chr1_3:28663583-28663602 | Msa0112980:intron | 30.0% | |
| TATTCTTTCGAAAACCAACT+AGG | + | chr1_3:28663736-28663755 | None:intergenic | 30.0% | |
| TACATGAATGAGTTATTGCA+AGG | - | chr1_3:28663754-28663773 | Msa0112980:intron | 30.0% | |
| ACATGAATGAGTTATTGCAA+GGG | - | chr1_3:28663755-28663774 | Msa0112980:intron | 30.0% | |
| ACGCAATAAAATAGAGCTTA+GGG | + | chr1_3:28664255-28664274 | None:intergenic | 30.0% | |
| AACGCAATAAAATAGAGCTT+AGG | + | chr1_3:28664256-28664275 | None:intergenic | 30.0% | |
| ! | TAAGCTCTATTTTATTGCGT+TGG | - | chr1_3:28664255-28664274 | Msa0112980:intron | 30.0% |
| ! | CGTTGAACAAGTATTTGTTA+CGG | + | chr1_3:28664354-28664373 | None:intergenic | 30.0% |
| CGTAACAAATACTTGTTCAA+CGG | - | chr1_3:28664352-28664371 | Msa0112980:intron | 30.0% | |
| AAACAACACTAATAAGTGGA+CGG | + | chr1_3:28664481-28664500 | None:intergenic | 30.0% | |
| ACACAAACAACACTAATAAG+TGG | + | chr1_3:28664485-28664504 | None:intergenic | 30.0% | |
| CTAAAAGTGATATATCTGCA+AGG | - | chr1_3:28665349-28665368 | Msa0112980:intron | 30.0% | |
| ! | GCATATTCCATATCTTTTAC+TGG | + | chr1_3:28665533-28665552 | None:intergenic | 30.0% |
| GTAAAAGATATGGAATATGC+GGG | - | chr1_3:28665533-28665552 | Msa0112980:CDS | 30.0% | |
| !! | ATTTTGGAGATGGAATTTCA+AGG | - | chr1_3:28665558-28665577 | Msa0112980:CDS | 30.0% |
| !! | CACAAAAACACATGGTTTTA+GGG | - | chr1_3:28665586-28665605 | Msa0112980:CDS | 30.0% |
| !!! | ACAAAAACACATGGTTTTAG+GGG | - | chr1_3:28665587-28665606 | Msa0112980:CDS | 30.0% |
| ! | AAGAAGCATGGTATATTTAG+TGG | - | chr1_3:28665872-28665891 | Msa0112980:CDS | 30.0% |
| TATAATGAACATCTCGACTA+TGG | - | chr1_3:28665947-28665966 | Msa0112980:CDS | 30.0% | |
| !!! | GCTTGTTTTGTCATTTTAAG+GGG | - | chr1_3:28666095-28666114 | Msa0112980:intron | 30.0% |
| TATTCTCTAATTACCAGACT+CGG | - | chr1_3:28666136-28666155 | Msa0112980:intron | 30.0% | |
| !! | CGTTGGTTTAAATGAAACAA+AGG | - | chr1_3:28666183-28666202 | Msa0112980:intron | 30.0% |
| ! | CATGATCAAAACAGTATTGG+GGG | + | chr1_3:28662207-28662226 | None:intergenic | 35.0% |
| GCATGATCAAAACAGTATTG+GGG | + | chr1_3:28662208-28662227 | None:intergenic | 35.0% | |
| GCTTTCTGTTGCAAAATGTT+TGG | - | chr1_3:28662226-28662245 | Msa0112980:intron | 35.0% | |
| CTGTTGCAAAATGTTTGGTA+TGG | - | chr1_3:28662231-28662250 | Msa0112980:intron | 35.0% | |
| TTACACATAGAGATAACCGA+AGG | + | chr1_3:28662271-28662290 | None:intergenic | 35.0% | |
| TGACCCATTTGGAAGTTTAA+GGG | + | chr1_3:28662485-28662504 | None:intergenic | 35.0% | |
| GTCAGCATGCAAAATGAATT+GGG | - | chr1_3:28662501-28662520 | Msa0112980:CDS | 35.0% | |
| ! | ATGGTATTTGGCTTCAGAAT+TGG | - | chr1_3:28662536-28662555 | Msa0112980:CDS | 35.0% |
| !! | TTGGTTCTCTTTTTCTTGAG+GGG | + | chr1_3:28662796-28662815 | None:intergenic | 35.0% |
| !! | GTTGGTTCTCTTTTTCTTGA+GGG | + | chr1_3:28662797-28662816 | None:intergenic | 35.0% |
| !! | AGTTGGTTCTCTTTTTCTTG+AGG | + | chr1_3:28662798-28662817 | None:intergenic | 35.0% |
| ! | TAAAGTTTTGCAGAGGCTAA+TGG | - | chr1_3:28663179-28663198 | Msa0112980:intron | 35.0% |
| TTATCGCCATATCATGTTGA+AGG | - | chr1_3:28663305-28663324 | Msa0112980:intron | 35.0% | |
| ! | AGAGGCTTTCATTTTCCTAT+AGG | - | chr1_3:28663397-28663416 | Msa0112980:intron | 35.0% |
| TTCGAAAACCAACTAGGTAT+CGG | + | chr1_3:28663730-28663749 | None:intergenic | 35.0% | |
| ! | AAGGCAACAATTAGAAGTGT+TGG | - | chr1_3:28663778-28663797 | Msa0112980:intron | 35.0% |
| !! | AACAATTAGAAGTGTTGGTG+AGG | - | chr1_3:28663783-28663802 | Msa0112980:intron | 35.0% |
| ! | CAAGAGCAGTTTTCTAATGA+GGG | - | chr1_3:28663843-28663862 | Msa0112980:intron | 35.0% |
| !! | AGGTTGGAAGTCATTTTCAA+AGG | - | chr1_3:28663867-28663886 | Msa0112980:intron | 35.0% |
| ! | AAGGAACATGAGTTGAAAGT+TGG | - | chr1_3:28663886-28663905 | Msa0112980:intron | 35.0% |
| TACTATTATCCCAACCACAA+AGG | - | chr1_3:28663960-28663979 | Msa0112980:intron | 35.0% | |
| GCAATAAAATAGAGCTTAGG+GGG | + | chr1_3:28664253-28664272 | None:intergenic | 35.0% | |
| CGCAATAAAATAGAGCTTAG+GGG | + | chr1_3:28664254-28664273 | None:intergenic | 35.0% | |
| ! | AGTATTTGTTACGGTTACGT+CGG | + | chr1_3:28664345-28664364 | None:intergenic | 35.0% |
| ACAAATACTTGTTCAACGGT+CGG | - | chr1_3:28664356-28664375 | Msa0112980:intron | 35.0% | |
| TGAGACAAATCAGTTTCACA+TGG | - | chr1_3:28664403-28664422 | Msa0112980:intron | 35.0% | |
| CAAATCAGTTTCACATGGTT+TGG | - | chr1_3:28664408-28664427 | Msa0112980:intron | 35.0% | |
| TTCTGTCAAAATGGAATGAG+CGG | - | chr1_3:28664446-28664465 | Msa0112980:CDS | 35.0% | |
| AACAACACTAATAAGTGGAC+GGG | + | chr1_3:28664480-28664499 | None:intergenic | 35.0% | |
| ACATACATTGAACAGTGTGT+AGG | + | chr1_3:28664569-28664588 | None:intergenic | 35.0% | |
| AGAGAGAAGAAACAAGAACA+GGG | - | chr1_3:28664746-28664765 | Msa0112980:intron | 35.0% | |
| !! | ACGAGGTTTTATGACAGTAA+GGG | + | chr1_3:28665009-28665028 | None:intergenic | 35.0% |
| ! | GTGTTGTCTCTGATTTTTCT+TGG | + | chr1_3:28665511-28665530 | None:intergenic | 35.0% |
| GACAACACCAGTAAAAGATA+TGG | - | chr1_3:28665523-28665542 | Msa0112980:intron | 35.0% | |
| ! | GCACAAAAACACATGGTTTT+AGG | - | chr1_3:28665585-28665604 | Msa0112980:CDS | 35.0% |
| CACACACATAGCTATATACA+TGG | + | chr1_3:28665790-28665809 | None:intergenic | 35.0% | |
| AGAGATTGCAAAGTAAAGAC+TGG | - | chr1_3:28666001-28666020 | Msa0112980:intron | 35.0% | |
| TGTGCAAAATCATGTGTTCA+AGG | - | chr1_3:28666051-28666070 | Msa0112980:intron | 35.0% | |
| !! | TTACCAGACTCGGTTTATTT+TGG | - | chr1_3:28666146-28666165 | Msa0112980:intron | 35.0% |
| ! | TTCTGATTTTCCAACCTTGT+CGG | + | chr1_3:28666224-28666243 | None:intergenic | 35.0% |
| AAAATCAGAAAGCAGTCCTA+AGG | - | chr1_3:28666234-28666253 | Msa0112980:intron | 35.0% | |
| TCTTGATGAACCTTGAGAAT+TGG | + | chr1_3:28666273-28666292 | None:intergenic | 35.0% | |
| TGATTAAAGATGATCGAGGA+AGG | + | chr1_3:28666301-28666320 | None:intergenic | 35.0% | |
| GCTTTGATTAAAGATGATCG+AGG | + | chr1_3:28666305-28666324 | None:intergenic | 35.0% | |
| GTTGCTTACTGTTAATGTTG+TGG | + | chr1_3:28666336-28666355 | None:intergenic | 35.0% | |
| !! | GGCAATACCATTTTTGCCTT+CGG | - | chr1_3:28662252-28662271 | Msa0112980:intron | 40.0% |
| GAGATAACCGAAGGCAAAAA+TGG | + | chr1_3:28662262-28662281 | None:intergenic | 40.0% | |
| TTCCAAGGAATTTCGTAGAG+AGG | - | chr1_3:28662431-28662450 | Msa0112980:CDS | 40.0% | |
| TACCTCTCTACGAAATTCCT+TGG | + | chr1_3:28662436-28662455 | None:intergenic | 40.0% | |
| ! | GGAATTTCGTAGAGAGGTAT+TGG | - | chr1_3:28662437-28662456 | Msa0112980:CDS | 40.0% |
| CTGACCCATTTGGAAGTTTA+AGG | + | chr1_3:28662486-28662505 | None:intergenic | 40.0% | |
| ! | ATTTTGCATGCTGACCCATT+TGG | + | chr1_3:28662496-28662515 | None:intergenic | 40.0% |
| GGTCAGCATGCAAAATGAAT+TGG | - | chr1_3:28662500-28662519 | Msa0112980:CDS | 40.0% | |
| AAAATGAATTGGGTGCAACG+CGG | - | chr1_3:28662511-28662530 | Msa0112980:CDS | 40.0% | |
| ! | TTTGGCTTCAGAATTGGAAG+AGG | - | chr1_3:28662542-28662561 | Msa0112980:CDS | 40.0% |
| AGAATTGGAAGAGGTTTGCA+TGG | - | chr1_3:28662551-28662570 | Msa0112980:CDS | 40.0% | |
| AATCTGACCCTCCTTTGTAT+TGG | + | chr1_3:28662606-28662625 | None:intergenic | 40.0% | |
| ! | AGTAGCAATGCCATTTGAGT+TGG | + | chr1_3:28662815-28662834 | None:intergenic | 40.0% |
| TTGTGAATGTTAGTCCCTTG+AGG | + | chr1_3:28662850-28662869 | None:intergenic | 40.0% | |
| TGCAACCCAGCAAAAAGTTT+CGG | - | chr1_3:28662888-28662907 | Msa0112980:CDS | 40.0% | |
| ! | CTTACCCGAAACTTTTTGCT+GGG | + | chr1_3:28662896-28662915 | None:intergenic | 40.0% |
| ! | ACTTACCCGAAACTTTTTGC+TGG | + | chr1_3:28662897-28662916 | None:intergenic | 40.0% |
| GTGAAACTAGGACTCTCATT+GGG | + | chr1_3:28663278-28663297 | None:intergenic | 40.0% | |
| AGTGAAACTAGGACTCTCAT+TGG | + | chr1_3:28663279-28663298 | None:intergenic | 40.0% | |
| AACTAGCGGAAGAGACATTT+AGG | - | chr1_3:28663597-28663616 | Msa0112980:intron | 40.0% | |
| ATTCATGCACGAAATGTGCA+AGG | + | chr1_3:28663668-28663687 | None:intergenic | 40.0% | |
| GAATGAGTTATTGCAAGGGA+AGG | - | chr1_3:28663759-28663778 | Msa0112980:intron | 40.0% | |
| ! | GCAAGAGCAGTTTTCTAATG+AGG | - | chr1_3:28663842-28663861 | Msa0112980:intron | 40.0% |
| CAATACCTTGAAACTTCTCC+GGG | + | chr1_3:28663993-28664012 | None:intergenic | 40.0% | |
| GCAATACCTTGAAACTTCTC+CGG | + | chr1_3:28663994-28664013 | None:intergenic | 40.0% | |
| ! | CAGTTTCACATGGTTTGGAA+CGG | - | chr1_3:28664413-28664432 | Msa0112980:intron | 40.0% |
| ATGTATGTGTGCCATCAAAC+AGG | - | chr1_3:28664581-28664600 | Msa0112980:CDS | 40.0% | |
| TGTATGTGTGCCATCAAACA+GGG | - | chr1_3:28664582-28664601 | Msa0112980:CDS | 40.0% | |
| ! | TTGTTTCTTCTCTCTGGTAG+TGG | + | chr1_3:28664741-28664760 | None:intergenic | 40.0% |
| ! | CTGTTCTTGTTTCTTCTCTC+TGG | + | chr1_3:28664747-28664766 | None:intergenic | 40.0% |
| CAGAGAGAAGAAACAAGAAC+AGG | - | chr1_3:28664745-28664764 | Msa0112980:intron | 40.0% | |
| GAGATGAGAGATATACAGAG+AGG | - | chr1_3:28664787-28664806 | Msa0112980:intron | 40.0% | |
| ! | GGTTCACGTTTTCTGATCTA+CGG | - | chr1_3:28664926-28664945 | Msa0112980:intron | 40.0% |
| ! | GTTCACGTTTTCTGATCTAC+GGG | - | chr1_3:28664927-28664946 | Msa0112980:intron | 40.0% |
| TTCTTTGGTGAGCAGTTGTT+GGG | - | chr1_3:28664952-28664971 | Msa0112980:intron | 40.0% | |
| !! | CGAGGTTTTATGACAGTAAG+GGG | + | chr1_3:28665008-28665027 | None:intergenic | 40.0% |
| !! | CACGAGGTTTTATGACAGTA+AGG | + | chr1_3:28665010-28665029 | None:intergenic | 40.0% |
| GTCATAAAACCTCGTGATGA+AGG | - | chr1_3:28665014-28665033 | Msa0112980:intron | 40.0% | |
| AACCTCGTGATGAAGGATAA+TGG | - | chr1_3:28665021-28665040 | Msa0112980:intron | 40.0% | |
| ! | TCGTGATGAAGGATAATGGT+GGG | - | chr1_3:28665025-28665044 | Msa0112980:intron | 40.0% |
| GTTGTGGGTAGTGTAAATTG+TGG | - | chr1_3:28665047-28665066 | Msa0112980:intron | 40.0% | |
| AGGGATCTACTGAAGAAGTT+GGG | + | chr1_3:28665452-28665471 | None:intergenic | 40.0% | |
| ACATGTCCACAAACTTCTCA+GGG | + | chr1_3:28665471-28665490 | None:intergenic | 40.0% | |
| ! | CTGATTTTTCTTGGACTCCT+TGG | + | chr1_3:28665502-28665521 | None:intergenic | 40.0% |
| ! | ATGGAATATGCGGGCAATTT+TGG | - | chr1_3:28665542-28665561 | Msa0112980:CDS | 40.0% |
| AATTCAGTGGAGTTGAGAGT+AGG | - | chr1_3:28665896-28665915 | Msa0112980:CDS | 40.0% | |
| ATTCAGTGGAGTTGAGAGTA+GGG | - | chr1_3:28665897-28665916 | Msa0112980:CDS | 40.0% | |
| ATGAACATCTCGACTATGGT+TGG | - | chr1_3:28665951-28665970 | Msa0112980:CDS | 40.0% | |
| ! | GACTATGGTTGGTTCACTAA+AGG | - | chr1_3:28665962-28665981 | Msa0112980:CDS | 40.0% |
| ! | ATGGTTGGTTCACTAAAGGT+TGG | - | chr1_3:28665966-28665985 | Msa0112980:CDS | 40.0% |
| GTTCCAAAATAAACCGAGTC+TGG | + | chr1_3:28666152-28666171 | None:intergenic | 40.0% | |
| TCACTAAGATACATCCGACA+AGG | - | chr1_3:28666207-28666226 | Msa0112980:intron | 40.0% | |
| TAAGATACATCCGACAAGGT+TGG | - | chr1_3:28666211-28666230 | Msa0112980:intron | 40.0% | |
| TGATGAACCTTGAGAATTGG+AGG | + | chr1_3:28666270-28666289 | None:intergenic | 40.0% | |
| CCACCAAATGATGAATCGCT+CGG | + | chr1_3:28662094-28662113 | None:intergenic | 45.0% | |
| TTGAGCACAAGTGGTTAACG+AGG | + | chr1_3:28662118-28662137 | None:intergenic | 45.0% | |
| ACCACTTGTGCTCAATCACT+TGG | - | chr1_3:28662123-28662142 | Msa0112980:CDS | 45.0% | |
| ACCAAGTGATTGAGCACAAG+TGG | + | chr1_3:28662127-28662146 | None:intergenic | 45.0% | |
| ! | TCCACATATCTGGTTTGCCT+AGG | - | chr1_3:28662295-28662314 | Msa0112980:intron | 45.0% |
| ACCTAGGCAAACCAGATATG+TGG | + | chr1_3:28662299-28662318 | None:intergenic | 45.0% | |
| TGTGCTTGCAGATGATTCCA+AGG | - | chr1_3:28662416-28662435 | Msa0112980:CDS | 45.0% | |
| GCAACCCAGCAAAAAGTTTC+GGG | - | chr1_3:28662889-28662908 | Msa0112980:CDS | 45.0% | |
| TAATGGAAACACAGGAGGCA+TGG | - | chr1_3:28663196-28663215 | Msa0112980:intron | 45.0% | |
| ! | AATGGAAACACAGGAGGCAT+GGG | - | chr1_3:28663197-28663216 | Msa0112980:intron | 45.0% |
| TTCGTACCTAACTGTGTGAG+AGG | - | chr1_3:28663379-28663398 | Msa0112980:intron | 45.0% | |
| TGAAAGCCTCTCACACAGTT+AGG | + | chr1_3:28663388-28663407 | None:intergenic | 45.0% | |
| !! | AACTAGGTATCGGCTGTTTC+AGG | + | chr1_3:28663720-28663739 | None:intergenic | 45.0% |
| TGAAACAGCCGATACCTAGT+TGG | - | chr1_3:28663719-28663738 | Msa0112980:intron | 45.0% | |
| !! | TTAGAAGTGTTGGTGAGGAC+AGG | - | chr1_3:28663788-28663807 | Msa0112980:intron | 45.0% |
| !! | TAGAAGTGTTGGTGAGGACA+GGG | - | chr1_3:28663789-28663808 | Msa0112980:intron | 45.0% |
| ! | AGCAGTTTTCTAATGAGGGC+AGG | - | chr1_3:28663847-28663866 | Msa0112980:intron | 45.0% |
| ! | GTTTTCTAATGAGGGCAGGT+TGG | - | chr1_3:28663851-28663870 | Msa0112980:intron | 45.0% |
| GTTACGGTTACGTCGGATTT+CGG | + | chr1_3:28664338-28664357 | None:intergenic | 45.0% | |
| CGAAAGCGGTTCTGTCAAAA+TGG | - | chr1_3:28664437-28664456 | Msa0112980:CDS | 45.0% | |
| TCAAGACACACCCTGTTTGA+TGG | + | chr1_3:28664595-28664614 | None:intergenic | 45.0% | |
| !! | TTCTTCTCTCTGGTAGTGGT+GGG | + | chr1_3:28664737-28664756 | None:intergenic | 45.0% |
| !! | TTTCTTCTCTCTGGTAGTGG+TGG | + | chr1_3:28664738-28664757 | None:intergenic | 45.0% |
| ! | TGACGGGTCTAACGGAATAA+CGG | + | chr1_3:28664873-28664892 | None:intergenic | 45.0% |
| GACCGTTTCAACGTCAGTTT+CGG | + | chr1_3:28664900-28664919 | None:intergenic | 45.0% | |
| GAAACTGACGTTGAAACGGT+CGG | - | chr1_3:28664899-28664918 | Msa0112980:intron | 45.0% | |
| AAACTGACGTTGAAACGGTC+GGG | - | chr1_3:28664900-28664919 | Msa0112980:intron | 45.0% | |
| TCTGATCTACGGGTGTTCTT+TGG | - | chr1_3:28664937-28664956 | Msa0112980:intron | 45.0% | |
| GTTCTTTGGTGAGCAGTTGT+TGG | - | chr1_3:28664951-28664970 | Msa0112980:intron | 45.0% | |
| CACCATTATCCTTCATCACG+AGG | + | chr1_3:28665026-28665045 | None:intergenic | 45.0% | |
| ! | CTCGTGATGAAGGATAATGG+TGG | - | chr1_3:28665024-28665043 | Msa0112980:intron | 45.0% |
| !! | TGAAGGATAATGGTGGGTTG+TGG | - | chr1_3:28665031-28665050 | Msa0112980:intron | 45.0% |
| !! | GAAGGATAATGGTGGGTTGT+GGG | - | chr1_3:28665032-28665051 | Msa0112980:intron | 45.0% |
| GGGATCTACTGAAGAAGTTG+GGG | + | chr1_3:28665451-28665470 | None:intergenic | 45.0% | |
| CAGGGATCTACTGAAGAAGT+TGG | + | chr1_3:28665453-28665472 | None:intergenic | 45.0% | |
| GTAGATCCCTGAGAAGTTTG+TGG | - | chr1_3:28665462-28665481 | Msa0112980:intron | 45.0% | |
| CACATGTCCACAAACTTCTC+AGG | + | chr1_3:28665472-28665491 | None:intergenic | 45.0% | |
| TGGACATGTGCAGAAAACCA+AGG | - | chr1_3:28665482-28665501 | Msa0112980:intron | 45.0% | |
| !! | TATGCGGGCAATTTTGGAGA+TGG | - | chr1_3:28665548-28665567 | Msa0112980:CDS | 45.0% |
| AGGAGCTGCACAAAAACACA+TGG | - | chr1_3:28665578-28665597 | Msa0112980:CDS | 45.0% | |
| TGCTTCTTCAACAGCTCACT+TGG | + | chr1_3:28665860-28665879 | None:intergenic | 45.0% | |
| AGTGAGCTGTTGAAGAAGCA+TGG | - | chr1_3:28665860-28665879 | Msa0112980:CDS | 45.0% | |
| TTCAGTGGAGTTGAGAGTAG+GGG | - | chr1_3:28665898-28665917 | Msa0112980:CDS | 45.0% | |
| TGGAGACACTTGCTTGTTTG+AGG | - | chr1_3:28666021-28666040 | Msa0112980:intron | 45.0% | |
| !! | TGGAGGAAGCATCATACCTT+AGG | + | chr1_3:28666253-28666272 | None:intergenic | 45.0% |
| GATGCTTCCTCCAATTCTCA+AGG | - | chr1_3:28666260-28666279 | Msa0112980:CDS | 45.0% | |
| GCTCCGAGCGATTCATCATT+TGG | - | chr1_3:28662088-28662107 | Msa0112980:CDS | 50.0% | |
| CCGAGCGATTCATCATTTGG+TGG | - | chr1_3:28662091-28662110 | Msa0112980:CDS | 50.0% | |
| ! | TGCAACGCGGTGATGGTATT+TGG | - | chr1_3:28662524-28662543 | Msa0112980:CDS | 50.0% |
| TTTGCATGGTCTCTCCGATG+TGG | - | chr1_3:28662565-28662584 | Msa0112980:CDS | 50.0% | |
| ACTACTGCTGCTACACCTCA+AGG | - | chr1_3:28662832-28662851 | Msa0112980:CDS | 50.0% | |
| CTACTGCTGCTACACCTCAA+GGG | - | chr1_3:28662833-28662852 | Msa0112980:CDS | 50.0% | |
| GCAGAGGCTAATGGAAACAC+AGG | - | chr1_3:28663188-28663207 | Msa0112980:intron | 50.0% | |
| GAGGCTAATGGAAACACAGG+AGG | - | chr1_3:28663191-28663210 | Msa0112980:intron | 50.0% | |
| !! | GTATCGGCTGTTTCAGGTCA+TGG | + | chr1_3:28663714-28663733 | None:intergenic | 50.0% |
| ATCCCAACCACAAAGGAACC+AGG | - | chr1_3:28663967-28663986 | Msa0112980:intron | 50.0% | |
| GTTCAACGGTCGGATGTGTA+CGG | - | chr1_3:28664366-28664385 | Msa0112980:intron | 50.0% | |
| TTCAACGGTCGGATGTGTAC+GGG | - | chr1_3:28664367-28664386 | Msa0112980:intron | 50.0% | |
| ! | TGGTTTGGAACGGACGAAAG+CGG | - | chr1_3:28664423-28664442 | Msa0112980:intron | 50.0% |
| !! | GGTCTAACGGAATAACGGGT+GGG | + | chr1_3:28664868-28664887 | None:intergenic | 50.0% |
| GACGGGTCTAACGGAATAAC+GGG | + | chr1_3:28664872-28664891 | None:intergenic | 50.0% | |
| GTTTCAACGTCAGTTTCGGC+GGG | + | chr1_3:28664896-28664915 | None:intergenic | 50.0% | |
| CGTTTCAACGTCAGTTTCGG+CGG | + | chr1_3:28664897-28664916 | None:intergenic | 50.0% | |
| CGCCGAAACTGACGTTGAAA+CGG | - | chr1_3:28664895-28664914 | Msa0112980:intron | 50.0% | |
| GTGTGTAGAGTGTGTGTTCG+TGG | - | chr1_3:28665142-28665161 | Msa0112980:CDS | 50.0% | |
| TGAGAGTAGGGGAAGGAACA+TGG | - | chr1_3:28665909-28665928 | Msa0112980:CDS | 50.0% | |
| TGGAACTGTGTTCTTCCCGT+TGG | - | chr1_3:28666166-28666185 | Msa0112980:intron | 50.0% | |
| AATTGGGTGCAACGCGGTGA+TGG | - | chr1_3:28662517-28662536 | Msa0112980:CDS | 55.0% | |
| GGCCTGGTTCCTTTGTGGTT+GGG | + | chr1_3:28663972-28663991 | None:intergenic | 55.0% | |
| AACCACAAAGGAACCAGGCC+CGG | - | chr1_3:28663972-28663991 | Msa0112980:intron | 55.0% | |
| TACAACCGAGCCAAACCACC+TGG | - | chr1_3:28664842-28664861 | Msa0112980:intron | 55.0% | |
| ! | GGGTCTAACGGAATAACGGG+TGG | + | chr1_3:28664869-28664888 | None:intergenic | 55.0% |
| GACGTTGAAACGGTCGGGAA+TGG | - | chr1_3:28664905-28664924 | Msa0112980:intron | 55.0% | |
| TGACAGTAAGGGGTGAGCAC+CGG | + | chr1_3:28664998-28665017 | None:intergenic | 55.0% | |
| GTGGAGTTGAGAGTAGGGGA+AGG | - | chr1_3:28665902-28665921 | Msa0112980:CDS | 55.0% | |
| ! | GTGTTGGTGAGGACAGGGCA+TGG | - | chr1_3:28663794-28663813 | Msa0112980:intron | 60.0% |
| GGGCCTGGTTCCTTTGTGGT+TGG | + | chr1_3:28663973-28663992 | None:intergenic | 60.0% | |
| CCTTGAAACTTCTCCGGGCC+TGG | + | chr1_3:28663988-28664007 | None:intergenic | 60.0% | |
| CCAGGCCCGGAGAAGTTTCA+AGG | - | chr1_3:28663985-28664004 | Msa0112980:intron | 60.0% | |
| TCTCAAACTTCACGCGCGCG+TGG | + | chr1_3:28664519-28664538 | None:intergenic | 60.0% | |
| !! | AACGGAATAACGGGTGGGCC+AGG | + | chr1_3:28664863-28664882 | None:intergenic | 60.0% |
| ACGTCAGTTTCGGCGGGTGA+CGG | + | chr1_3:28664890-28664909 | None:intergenic | 60.0% | |
| !! | AGTAAGGGGTGAGCACCGGT+CGG | + | chr1_3:28664994-28665013 | None:intergenic | 60.0% |
| CTCCGGGCCTGGTTCCTTTG+TGG | + | chr1_3:28663977-28663996 | None:intergenic | 65.0% | |
| ! | GTGGGCCAGGTGGTTTGGCT+CGG | + | chr1_3:28664850-28664869 | None:intergenic | 65.0% |
| AACGGGTGGGCCAGGTGGTT+TGG | + | chr1_3:28664855-28664874 | None:intergenic | 65.0% | |
| !! | GGAATAACGGGTGGGCCAGG+TGG | + | chr1_3:28664860-28664879 | None:intergenic | 65.0% |
| !! | TCGGCGGGTGACGGGTCTAA+CGG | + | chr1_3:28664881-28664900 | None:intergenic | 65.0% |
| CGTCAGTTTCGGCGGGTGAC+GGG | + | chr1_3:28664889-28664908 | None:intergenic | 65.0% | |
| ! | CGGTCGGTTACGGGCGGATT+CGG | + | chr1_3:28664978-28664997 | None:intergenic | 65.0% |
| CGAATCCGCCCGTAACCGAC+CGG | - | chr1_3:28664976-28664995 | Msa0112980:intron | 65.0% | |
| !! | GGTGAGCACCGGTCGGTTAC+GGG | + | chr1_3:28664987-28665006 | None:intergenic | 65.0% |
| !! | GGGTGAGCACCGGTCGGTTA+CGG | + | chr1_3:28664988-28665007 | None:intergenic | 65.0% |
| !! | GAGCACCGGTCGGTTACGGG+CGG | + | chr1_3:28664984-28665003 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 28662072 | 28666364 | 28662072 | ID=Msa0112980;Name=Msa0112980 |
| chr1_3 | mRNA | 28662072 | 28666364 | 28662072 | ID=Msa0112980-mRNA-1;Parent=Msa0112980;Name=Msa0112980-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0|0.75|1|1|8|0|513 |
| chr1_3 | exon | 28666260 | 28666364 | 28666260 | ID=Msa0112980-mRNA-1:exon:9446;Parent=Msa0112980-mRNA-1 |
| chr1_3 | exon | 28665526 | 28666009 | 28665526 | ID=Msa0112980-mRNA-1:exon:9445;Parent=Msa0112980-mRNA-1 |
| chr1_3 | exon | 28665096 | 28665244 | 28665096 | ID=Msa0112980-mRNA-1:exon:9444;Parent=Msa0112980-mRNA-1 |
| chr1_3 | exon | 28664430 | 28664709 | 28664430 | ID=Msa0112980-mRNA-1:exon:9443;Parent=Msa0112980-mRNA-1 |
| chr1_3 | exon | 28662828 | 28662941 | 28662828 | ID=Msa0112980-mRNA-1:exon:9442;Parent=Msa0112980-mRNA-1 |
| chr1_3 | exon | 28662675 | 28662733 | 28662675 | ID=Msa0112980-mRNA-1:exon:9441;Parent=Msa0112980-mRNA-1 |
| chr1_3 | exon | 28662364 | 28662591 | 28662364 | ID=Msa0112980-mRNA-1:exon:9440;Parent=Msa0112980-mRNA-1 |
| chr1_3 | exon | 28662072 | 28662194 | 28662072 | ID=Msa0112980-mRNA-1:exon:9439;Parent=Msa0112980-mRNA-1 |
| chr1_3 | CDS | 28666260 | 28666364 | 28666260 | ID=Msa0112980-mRNA-1:cds;Parent=Msa0112980-mRNA-1 |
| chr1_3 | CDS | 28665526 | 28666009 | 28665526 | ID=Msa0112980-mRNA-1:cds;Parent=Msa0112980-mRNA-1 |
| chr1_3 | CDS | 28665096 | 28665244 | 28665096 | ID=Msa0112980-mRNA-1:cds;Parent=Msa0112980-mRNA-1 |
| chr1_3 | CDS | 28664430 | 28664709 | 28664430 | ID=Msa0112980-mRNA-1:cds;Parent=Msa0112980-mRNA-1 |
| chr1_3 | CDS | 28662828 | 28662941 | 28662828 | ID=Msa0112980-mRNA-1:cds;Parent=Msa0112980-mRNA-1 |
| chr1_3 | CDS | 28662675 | 28662733 | 28662675 | ID=Msa0112980-mRNA-1:cds;Parent=Msa0112980-mRNA-1 |
| chr1_3 | CDS | 28662364 | 28662591 | 28662364 | ID=Msa0112980-mRNA-1:cds;Parent=Msa0112980-mRNA-1 |
| chr1_3 | CDS | 28662072 | 28662194 | 28662072 | ID=Msa0112980-mRNA-1:cds;Parent=Msa0112980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
