AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0113020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0113020 MtrunA17_Chr1g0163131 71.326 279 37 5 5 243 33 308 8.29e-127 375
Msa0113020 MtrunA17_Chr1g0163131 32.721 272 142 5 235 506 33 263 1.05e-32 127
Msa0113020 MtrunA17_Chr6g0476171 71.861 231 57 5 309 535 2 228 2.66e-102 310
Msa0113020 MtrunA17_Chr6g0476171 40.196 102 48 4 139 230 136 234 8.91e-12 65.5
Msa0113020 MtrunA17_Chr1g0163101 62.937 143 22 4 5 120 32 170 1.29e-46 162
Msa0113020 MtrunA17_Chr1g0163101 56.140 114 44 1 229 336 26 139 6.11e-38 138
Msa0113020 MtrunA17_Chr1g0162161 57.931 145 32 3 3 120 1 143 3.08e-45 157
Msa0113020 MtrunA17_Chr1g0162161 55.645 124 43 3 235 347 3 125 4.31e-38 138
Msa0113020 MtrunA17_Chr1g0163121 60.000 140 26 3 3 120 8 139 2.77e-43 151
Msa0113020 MtrunA17_Chr1g0163121 77.027 74 17 0 235 308 10 83 5.90e-35 129
Msa0113020 MtrunA17_Chr1g0163261 38.246 285 113 9 219 444 8 288 1.86e-41 152
Msa0113020 MtrunA17_Chr1g0163261 24.354 271 147 8 6 236 25 277 3.83e-12 67.4
Msa0113020 MtrunA17_Chr1g0163081 55.479 146 33 4 1 120 1 140 4.57e-40 143
Msa0113020 MtrunA17_Chr1g0163081 82.432 74 13 0 235 308 5 78 1.94e-36 133
Msa0113020 MtrunA17_Chr1g0163161 62.308 130 20 4 18 120 1 128 1.95e-38 138
Msa0113020 MtrunA17_Chr1g0163161 47.706 109 51 1 248 350 1 109 2.96e-26 104
Msa0113020 MtrunA17_Chr1g0163141 75.610 82 19 1 228 308 2 83 3.69e-37 136
Msa0113020 MtrunA17_Chr1g0163141 47.500 160 40 3 5 120 10 169 3.47e-32 122
Msa0113020 MtrunA17_Chr6g0476181 80.822 73 14 0 235 307 1 73 1.13e-36 134
Msa0113020 MtrunA17_Chr6g0476181 51.875 160 26 5 5 120 1 153 5.74e-35 129
Msa0113020 MtrunA17_Chr1g0163251 33.333 288 120 9 228 451 13 292 6.75e-35 136
Msa0113020 MtrunA17_Chr1g0163251 25.283 265 137 10 6 228 21 266 1.26e-12 70.1
Msa0113020 MtrunA17_Chr1g0163181 28.760 379 163 13 228 506 13 384 6.76e-34 134
Msa0113020 MtrunA17_Chr1g0163181 48.246 114 47 4 127 232 311 420 5.37e-24 105
Msa0113020 MtrunA17_Chr1g0163181 22.131 488 246 16 6 438 21 429 6.55e-18 86.7
Msa0113020 MtrunA17_Chr1g0171611 33.471 242 120 6 236 437 25 265 2.92e-31 123
Msa0113020 MtrunA17_Chr1g0163231 33.588 262 105 8 236 437 25 277 7.64e-31 122
Msa0113020 MtrunA17_Chr1g0163231 24.621 264 131 10 6 226 25 263 9.28e-14 72.4
Msa0113020 MtrunA17_Chr1g0163091 46.429 140 61 6 319 453 3 133 4.39e-25 102
Msa0113020 MtrunA17_Chr1g0163091 59.722 72 22 1 514 578 36 107 6.42e-19 84.3
Msa0113020 MtrunA17_Chr1g0162151 38.122 181 87 7 319 495 3 162 5.42e-23 97.8
Msa0113020 MtrunA17_Chr1g0162151 58.333 72 23 1 514 578 36 107 1.53e-17 82.0
Msa0113020 MtrunA17_Chr1g0162151 46.154 78 33 1 171 248 146 214 4.31e-13 68.9
Msa0113020 MtrunA17_Chr1g0163201 36.019 211 113 10 310 510 153 351 6.09e-21 95.5
Msa0113020 MtrunA17_Chr1g0163201 53.333 90 32 3 152 233 297 384 1.25e-19 91.7
Msa0113020 MtrunA17_Chr1g0163201 25.763 295 171 9 6 256 19 309 3.42e-15 77.8
Msa0113020 MtrunA17_Chr1g0163201 43.056 72 40 1 236 306 19 90 1.02e-12 70.1
Msa0113020 MtrunA17_Chr1g0163111 43.220 118 57 3 128 243 121 230 3.52e-20 89.7
Msa0113020 MtrunA17_Chr1g0163111 33.702 181 104 8 341 510 12 187 9.15e-18 82.8
Msa0113020 MtrunA17_Chr1g0163151 50.000 90 35 3 152 233 126 213 3.11e-19 87.0
Msa0113020 MtrunA17_Chr1g0163151 35.429 175 101 8 336 506 10 176 8.84e-17 79.7
Msa0113020 MtrunA17_Chr3g0077411 22.779 439 277 13 39 437 99 515 8.65e-19 89.7
Msa0113020 MtrunA17_Chr3g0103171 27.138 269 152 6 1 235 1 259 1.13e-16 80.5
Msa0113020 MtrunA17_Chr3g0131891 25.000 312 160 9 196 441 2 305 1.31e-16 81.3
Msa0113020 MtrunA17_Chr1g0163241 43.478 92 49 2 216 306 5 94 1.56e-16 77.4
Msa0113020 MtrunA17_Chr1g0163241 34.513 113 50 2 3 92 20 131 1.20e-11 63.5
Msa0113020 MtrunA17_Chr1g0163221 28.159 277 164 7 6 251 27 299 1.61e-16 81.6
Msa0113020 MtrunA17_Chr1g0163191 42.500 80 45 1 228 306 13 92 3.19e-15 73.6
Msa0113020 MtrunA17_Chr4g0067431 26.619 278 138 11 6 228 31 297 3.20e-15 77.0
Msa0113020 MtrunA17_Chr4g0067431 43.333 90 47 3 220 305 15 104 2.43e-12 68.6
Msa0113020 MtrunA17_Chr7g0233531 27.068 266 134 10 235 441 1 265 7.73e-15 75.1
Msa0113020 MtrunA17_Chr3g0077461 23.209 349 201 8 1 314 18 334 1.64e-14 76.3
Msa0113020 MtrunA17_Chr6g0467351 41.758 91 49 3 220 306 15 105 8.60e-14 71.2
Msa0113020 MtrunA17_Chr5g0419201 37.895 95 51 3 224 310 15 109 4.34e-13 68.2
Msa0113020 MtrunA17_Chr3g0103201 31.132 212 108 8 39 232 20 211 1.36e-12 67.4
Msa0113020 MtrunA17_Chr7g0233521 28.352 261 142 10 5 230 1 251 1.45e-12 68.6
Msa0113020 MtrunA17_Chr1g0163061 43.011 93 49 2 218 306 13 105 2.49e-12 67.8
Msa0113020 MtrunA17_Chr7g0233571 39.362 94 54 2 220 310 10 103 3.90e-12 66.2
Msa0113020 MtrunA17_Chr3g0077451 25.110 227 141 10 236 438 12 233 1.64e-11 64.7
Msa0113020 MtrunA17_Chr3g0103151 36.170 94 54 3 223 310 10 103 7.96e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 105 sgRNAs with CRISPR-Local

Find 876 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGATCAACATCTCGATTA+TGG 0.210215 1_3:+28688214 Msa0113020:CDS
TCTTCTTGTAATGATAATAT+TGG 0.220750 1_3:+28682096 Msa0113020:CDS
TGCAGGTTGGAGAAAGTTTC+AGG 0.242187 1_3:+28683176 Msa0113020:CDS
TATACTAGATGATGGTAAAT+TGG 0.271562 1_3:+28681755 Msa0113020:CDS
TTGAATTTGTCGTGTAAATT+CGG 0.303125 1_3:-28687983 None:intergenic
GATCTGAGTGCAAAATGTTT+TGG 0.333184 1_3:+28681645 Msa0113020:CDS
GAAGAATGCAAATTGAAGTT+TGG 0.337203 1_3:+28683198 Msa0113020:CDS
TATATTTAGTGGAAATTTAG+TGG 0.337369 1_3:+28688150 Msa0113020:CDS
CTCTGGGCATGGTTCCTTTG+TGG 0.340102 1_3:-28687740 None:intergenic
GGCATGGTTCCTTTGTGGTT+GGG 0.348842 1_3:-28687735 None:intergenic
GGTCTGAGTTCAAAATGAAT+TGG 0.350012 1_3:+28686385 Msa0113020:CDS
CTTCTTGTAATGATAATATT+GGG 0.353295 1_3:+28682097 Msa0113020:CDS
TACAACGCGGTGAGGATGTT+TGG 0.356017 1_3:+28686409 Msa0113020:CDS
AGCAGCCGCCATGCTCTATC+AGG 0.356686 1_3:+28682147 Msa0113020:CDS
TACCAAGCGAGCTGTTAAAA+AGG 0.361507 1_3:+28688122 Msa0113020:CDS
AAAAGGCATAATATATTTAG+TGG 0.367760 1_3:+28688139 Msa0113020:CDS
AATCGGACCCTCCTTTGTAT+TGG 0.370634 1_3:-28681722 None:intergenic
GGGCATGGTTCCTTTGTGGT+TGG 0.373028 1_3:-28687736 None:intergenic
TGTTTACTCAAGAACTCATT+TGG 0.374164 1_3:-28683060 None:intergenic
TTATAACCTTCAATGTGATA+TGG 0.376198 1_3:-28687104 None:intergenic
AATCTGACCCTCCTTTGTAT+TGG 0.385935 1_3:-28686488 None:intergenic
ATGATCAACATCTCGATTAT+GGG 0.386338 1_3:+28688215 Msa0113020:CDS
TACAATGCTTGTTTGAATCA+TGG 0.387500 1_3:-28681812 None:intergenic
TTGAAGGGACCGCAAGGATA+AGG 0.390516 1_3:+28689056 Msa0113020:CDS
GAAATACCTTGAAAATGCTC+TGG 0.394859 1_3:-28687757 None:intergenic
CCTTGCGGTCCCTTCAAACT+TGG 0.400828 1_3:-28689050 None:intergenic
AGGATGTTTGGCTTCAGAAT+TGG 0.404471 1_3:+28686421 Msa0113020:CDS
CGCAACAATTGTCAATTTGA+AGG 0.407258 1_3:+28689221 Msa0113020:CDS
CATTGAAGGTTATAATAGAT+TGG 0.414338 1_3:+28687112 Msa0113020:CDS
GTGTTATGTTTCATTACATC+AGG 0.428980 1_3:-28682698 None:intergenic
TGAAGGGACCGCAAGGATAA+GGG 0.442720 1_3:+28689057 Msa0113020:CDS
AGATTTACATGGAAAATTTG+TGG 0.454668 1_3:+28683086 Msa0113020:CDS
TTAGAAGTGTTGGTGAGGAC+AGG 0.455257 1_3:+28687554 Msa0113020:CDS
GTCTGAGTTCAAAATGAATT+GGG 0.455385 1_3:+28686386 Msa0113020:CDS
TATGTCATTATACTAGATGA+TGG 0.456009 1_3:+28681747 Msa0113020:CDS
TACTTGTCCACAAAATTCCT+TGG 0.459394 1_3:-28681578 None:intergenic
TTATCGCCATATCACATTGA+AGG 0.463256 1_3:+28687098 Msa0113020:CDS
TAAAAGAAACTGTGGAGGCC+GGG 0.469744 1_3:+28686980 Msa0113020:CDS
GAATTTACACGACAAATTCA+AGG 0.470517 1_3:+28687985 Msa0113020:CDS
AAGGAACATGACTTGAAAGT+TGG 0.470859 1_3:+28687652 Msa0113020:CDS
TGTCTCTCTACGAATTTCCT+TGG 0.471061 1_3:-28686318 None:intergenic
ACTAATTCTGCCACACCTCA+TGG 0.474711 1_3:+28681894 Msa0113020:CDS
AGAAGAAGGAACATGGTTTG+TGG 0.477415 1_3:+28688183 Msa0113020:CDS
GTGGAGTTGAAAGTAGAAGA+AGG 0.483404 1_3:+28688169 Msa0113020:CDS
CTGCATAAAATCTACTGCCT+TGG 0.484079 1_3:-28683158 None:intergenic
GAATACTCGACCAAGTTTGA+AGG 0.491828 1_3:+28689040 Msa0113020:CDS
CTAAAAGAAACTGTGGAGGC+CGG 0.494656 1_3:+28686979 Msa0113020:CDS
TGAAACAGATAATACCTAGA+TGG 0.494737 1_3:+28687485 Msa0113020:intron
TTTGTGGAGTTGAAAGTTGG+TGG 0.507850 1_3:+28683102 Msa0113020:CDS
GATAATTTGACGGTGAAACT+AGG 0.514346 1_3:-28687080 None:intergenic
ACATCGCTTAGACTTCCAAA+TGG 0.515725 1_3:+28686363 Msa0113020:CDS
CTTCAAATTGACAATTGTTG+CGG 0.515737 1_3:-28689220 None:intergenic
AGTAAACATGAAGATTTACA+TGG 0.517051 1_3:+28683075 Msa0113020:CDS
GCAACCAAGCAAAATGTCTC+AGG 0.523287 1_3:+28681936 Msa0113020:CDS
GGAAATTCGTAGAGAGACAT+TGG 0.530097 1_3:+28686322 Msa0113020:CDS
AAATTTGTGGAGTTGAAAGT+TGG 0.530932 1_3:+28683099 Msa0113020:CDS
TTTGGAAGTCTAAGCGATGT+TGG 0.531226 1_3:-28686360 None:intergenic
TGGTTGGAATTTATTTGTGA+AGG 0.536306 1_3:+28689129 Msa0113020:CDS
CGCAAGGATAAGGGTTGGCA+AGG 0.539397 1_3:+28689066 Msa0113020:CDS
GCACAAATTATCATCCCAAT+GGG 0.541386 1_3:+28687054 Msa0113020:CDS
TTTGTGGACAAGTATTGGAA+AGG 0.542062 1_3:+28681587 Msa0113020:CDS
TATTCTTTCGAAAATAGAGT+TGG 0.544644 1_3:-28689022 None:intergenic
TGAAAGTAGAAGAAGGAACA+TGG 0.550721 1_3:+28688176 Msa0113020:CDS
TGATCAACATCTCGATTATG+GGG 0.551034 1_3:+28688216 Msa0113020:CDS
TGCACAAATTATCATCCCAA+TGG 0.551525 1_3:+28687053 Msa0113020:CDS
ATTTCTTAGCTTTCTTACCC+CGG 0.551754 1_3:-28686998 None:intergenic
AAATACCTTGAAAATGCTCT+GGG 0.553188 1_3:-28687756 None:intergenic
CATCGCTTAGACTTCCAAAT+GGG 0.555762 1_3:+28686364 Msa0113020:CDS
TGAAAGTTGGTGGAAAGTCG+TGG 0.557106 1_3:+28683112 Msa0113020:CDS
AAAAGAAACTGTGGAGGCCG+GGG 0.560094 1_3:+28686981 Msa0113020:CDS
CCTTGAAAATGCTCTGGGCA+TGG 0.560212 1_3:-28687751 None:intergenic
CATGTTTCTATAGATTCAGA+AGG 0.561733 1_3:+28682674 Msa0113020:intron
TAGAAGTGTTGGTGAGGACA+GGG 0.562489 1_3:+28687555 Msa0113020:CDS
CTAATTCTGCCACACCTCAT+GGG 0.562653 1_3:+28681895 Msa0113020:CDS
CTCACCAACACTTCTAATTG+TGG 0.571224 1_3:-28687548 None:intergenic
AAGGCCACAATTAGAAGTGT+TGG 0.571434 1_3:+28687544 Msa0113020:CDS
GTGAAACTAGGACTCCCATT+GGG 0.575881 1_3:-28687068 None:intergenic
GGTGAAACTAGGACTCCCAT+TGG 0.578470 1_3:-28687069 None:intergenic
AGACGTTCTGTTATGAACAC+TGG 0.580436 1_3:+28689109 Msa0113020:CDS
CCTCACAAGGTTATGATGGA+AGG 0.580542 1_3:+28682070 Msa0113020:intron
TGTATCTGCAGATGATTCCA+AGG 0.583709 1_3:+28681561 Msa0113020:CDS
TTTGCGCTCTCTCTCAGATG+TGG 0.586381 1_3:+28686450 Msa0113020:CDS
TGTGCTTGCAGATGATTCCA+AGG 0.587783 1_3:+28686301 Msa0113020:intron
AAATTGAATTATTATCTCCA+AGG 0.594943 1_3:+28683141 Msa0113020:CDS
GTGATATGGCGATAATTTGA+CGG 0.598386 1_3:-28687090 None:intergenic
TTTGGCTTCAGAATTGGAAG+CGG 0.599388 1_3:+28686427 Msa0113020:CDS
GGGTTGGCAAGGATAGAACT+TGG 0.601325 1_3:+28689077 Msa0113020:CDS
CACAATTAGAAGTGTTGGTG+AGG 0.602624 1_3:+28687549 Msa0113020:CDS
CTTGCCAACCCTTATCCTTG+CGG 0.603879 1_3:-28689065 None:intergenic
AATACTCGACCAAGTTTGAA+GGG 0.608534 1_3:+28689041 Msa0113020:CDS
TGGCAAGGATAGAACTTGGA+AGG 0.610262 1_3:+28689081 Msa0113020:CDS
TACTATTATCCCAACCACAA+AGG 0.624953 1_3:+28687726 Msa0113020:CDS
AGAAGGAACATGGTTTGTGG+AGG 0.627154 1_3:+28688186 Msa0113020:CDS
GTTCTGTTATGAACACTGGT+TGG 0.630502 1_3:+28689113 Msa0113020:CDS
GGGACCGCAAGGATAAGGGT+TGG 0.632227 1_3:+28689061 Msa0113020:CDS
GAGGAGTACCTGATAGAGCA+TGG 0.633104 1_3:-28682155 None:intergenic
CCAAGTTTGAAGGGACCGCA+AGG 0.642863 1_3:+28689050 Msa0113020:CDS
GAATGAGTTATTGCAACAGA+AGG 0.647927 1_3:+28687525 Msa0113020:CDS
GTGTTGGTGAGGACAGGGCA+TGG 0.648324 1_3:+28687560 Msa0113020:CDS
GCAGAGGCTAAAAGAAACTG+TGG 0.652399 1_3:+28686972 Msa0113020:intron
GATCAACATCTCGATTATGG+GGG 0.666353 1_3:+28688217 Msa0113020:CDS
GAATTGGGTACAACGCGGTG+AGG 0.673958 1_3:+28686401 Msa0113020:CDS
GAGGCTAAAAGAAACTGTGG+AGG 0.695999 1_3:+28686975 Msa0113020:intron
AAAATGAATTGGGTACAACG+CGG 0.771281 1_3:+28686396 Msa0113020:CDS
GAGTACCTGATAGAGCATGG+CGG 0.813629 1_3:-28682152 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTGAAAAAAAATGTTATT+TGG + chr1_3:28682011-28682030 Msa0113020:intron 10.0%
!! AATAAAAAAAAGTTCATTTA+AGG - chr1_3:28682198-28682217 None:intergenic 10.0%
!! TGAATAAAAAATAATAATAG+AGG - chr1_3:28682221-28682240 None:intergenic 10.0%
!!! TTTAAATAGAAATTTTGTAT+TGG - chr1_3:28682934-28682953 None:intergenic 10.0%
!! TCGTATTAAAAAAAAAAAAA+AGG + chr1_3:28685747-28685766 Msa0113020:intron 10.0%
!!! ATTTTTAGTTTCAAAATTTT+AGG - chr1_3:28685786-28685805 None:intergenic 10.0%
!! TGTTAATAAATTTATTCAAT+AGG - chr1_3:28687264-28687283 None:intergenic 10.0%
!!! TTTATGTATATTTTAATTAC+TGG + chr1_3:28687390-28687409 Msa0113020:intron 10.0%
!! TATTGAAAAAAAATGTTATT+TGG + chr1_3:28682011-28682030 Msa0113020:intron 10.0%
!! AATAAAAAAAAGTTCATTTA+AGG - chr1_3:28682198-28682217 None:intergenic 10.0%
!! TGAATAAAAAATAATAATAG+AGG - chr1_3:28682221-28682240 None:intergenic 10.0%
!!! TTTAAATAGAAATTTTGTAT+TGG - chr1_3:28682934-28682953 None:intergenic 10.0%
!! TCGTATTAAAAAAAAAAAAA+AGG + chr1_3:28685747-28685766 Msa0113020:intron 10.0%
!!! ATTTTTAGTTTCAAAATTTT+AGG - chr1_3:28685786-28685805 None:intergenic 10.0%
!! TGTTAATAAATTTATTCAAT+AGG - chr1_3:28687264-28687283 None:intergenic 10.0%
!!! TTTATGTATATTTTAATTAC+TGG + chr1_3:28687390-28687409 Msa0113020:intron 10.0%
!!! TTTGAAAATTTTAGAGATAT+TGG - chr1_3:28681623-28681642 None:intergenic 15.0%
!!! ATATCTCTAAAATTTTCAAA+TGG + chr1_3:28681623-28681642 Msa0113020:CDS 15.0%
!! TAGTATAATGACATAAAAAT+CGG - chr1_3:28681742-28681761 None:intergenic 15.0%
!! TTTAATCTAGAGAAATAATA+AGG - chr1_3:28682415-28682434 None:intergenic 15.0%
!! TTAAATGTCTCTAAATAATT+TGG + chr1_3:28682557-28682576 Msa0113020:intron 15.0%
!! ATTACTTATTATGTAAAATG+TGG + chr1_3:28682757-28682776 Msa0113020:intron 15.0%
!! ATATGCAGATATATAAATAT+AGG + chr1_3:28682787-28682806 Msa0113020:intron 15.0%
!! ATTAAATTGTTGAAATTGTT+AGG - chr1_3:28684848-28684867 None:intergenic 15.0%
!! AACAATTTCAACAATTTAAT+TGG + chr1_3:28684848-28684867 Msa0113020:intron 15.0%
!!! TTATTGCTTAAATACATTTT+GGG - chr1_3:28684917-28684936 None:intergenic 15.0%
!!! TTTATTGCTTAAATACATTT+TGG - chr1_3:28684918-28684937 None:intergenic 15.0%
!! ACTATAGATTAAAATTTGAA+AGG + chr1_3:28684981-28685000 Msa0113020:intron 15.0%
!! CTATAGATTAAAATTTGAAA+GGG + chr1_3:28684982-28685001 Msa0113020:intron 15.0%
!! TAACATGAAAAATACTTATT+TGG + chr1_3:28685017-28685036 Msa0113020:intron 15.0%
!!! AAAATTTTAGGTAGAAAAAT+AGG - chr1_3:28685774-28685793 None:intergenic 15.0%
!! TTTATTATCATTAATGGAAT+TGG + chr1_3:28685823-28685842 Msa0113020:intron 15.0%
!!! AGATTTTCATGTTATTATAT+TGG + chr1_3:28686506-28686525 Msa0113020:CDS 15.0%
!!! AAATTGACAAAAATGTTTTT+AGG + chr1_3:28686800-28686819 Msa0113020:intron 15.0%
!!! TTTTTTTATACGTAAATACA+AGG - chr1_3:28686878-28686897 None:intergenic 15.0%
!! ATAGTAATTGTGAATAAAAA+TGG - chr1_3:28687712-28687731 None:intergenic 15.0%
!!! TTTGAAAATTTTAGAGATAT+TGG - chr1_3:28681623-28681642 None:intergenic 15.0%
!!! ATATCTCTAAAATTTTCAAA+TGG + chr1_3:28681623-28681642 Msa0113020:CDS 15.0%
!! TAGTATAATGACATAAAAAT+CGG - chr1_3:28681742-28681761 None:intergenic 15.0%
!! TTTAATCTAGAGAAATAATA+AGG - chr1_3:28682415-28682434 None:intergenic 15.0%
!! TTAAATGTCTCTAAATAATT+TGG + chr1_3:28682557-28682576 Msa0113020:intron 15.0%
!! ATTACTTATTATGTAAAATG+TGG + chr1_3:28682757-28682776 Msa0113020:intron 15.0%
!! ATATGCAGATATATAAATAT+AGG + chr1_3:28682787-28682806 Msa0113020:intron 15.0%
!! ATTAAATTGTTGAAATTGTT+AGG - chr1_3:28684848-28684867 None:intergenic 15.0%
!! AACAATTTCAACAATTTAAT+TGG + chr1_3:28684848-28684867 Msa0113020:intron 15.0%
!!! TTATTGCTTAAATACATTTT+GGG - chr1_3:28684917-28684936 None:intergenic 15.0%
!!! TTTATTGCTTAAATACATTT+TGG - chr1_3:28684918-28684937 None:intergenic 15.0%
!! ACTATAGATTAAAATTTGAA+AGG + chr1_3:28684981-28685000 Msa0113020:intron 15.0%
!! CTATAGATTAAAATTTGAAA+GGG + chr1_3:28684982-28685001 Msa0113020:intron 15.0%
!! TAACATGAAAAATACTTATT+TGG + chr1_3:28685017-28685036 Msa0113020:intron 15.0%
!!! AAAATTTTAGGTAGAAAAAT+AGG - chr1_3:28685774-28685793 None:intergenic 15.0%
!! TTTATTATCATTAATGGAAT+TGG + chr1_3:28685823-28685842 Msa0113020:intron 15.0%
!!! AGATTTTCATGTTATTATAT+TGG + chr1_3:28686506-28686525 Msa0113020:CDS 15.0%
!!! AAATTGACAAAAATGTTTTT+AGG + chr1_3:28686800-28686819 Msa0113020:intron 15.0%
!!! TTTTTTTATACGTAAATACA+AGG - chr1_3:28686878-28686897 None:intergenic 15.0%
!! ATAGTAATTGTGAATAAAAA+TGG - chr1_3:28687712-28687731 None:intergenic 15.0%
!! TCTTCTTGTAATGATAATAT+TGG + chr1_3:28682096-28682115 Msa0113020:CDS 20.0%
!! CTTCTTGTAATGATAATATT+GGG + chr1_3:28682097-28682116 Msa0113020:CDS 20.0%
!! AGGAAAGAGAAAAATTAATT+TGG + chr1_3:28682307-28682326 Msa0113020:intron 20.0%
!! CGAGAAATATGAAATTAAAA+TGG - chr1_3:28682380-28682399 None:intergenic 20.0%
!!! TTGATAACATAATCCTATAT+GGG - chr1_3:28682995-28683014 None:intergenic 20.0%
!!! TTTGATAACATAATCCTATA+TGG - chr1_3:28682996-28683015 None:intergenic 20.0%
!! AAATTGAATTATTATCTCCA+AGG + chr1_3:28683141-28683160 Msa0113020:CDS 20.0%
!! TAACATATCTAAGGAAATAT+CGG - chr1_3:28683639-28683658 None:intergenic 20.0%
!! TTCCTTAGATATGTTATTAT+CGG + chr1_3:28683643-28683662 Msa0113020:intron 20.0%
!!! CATTATCTAAGTTCATTTTA+CGG - chr1_3:28683711-28683730 None:intergenic 20.0%
!! GTATACATTCATTATGTTAT+AGG - chr1_3:28683751-28683770 None:intergenic 20.0%
!!! AATTCTAGACACTTTTAATT+TGG + chr1_3:28684469-28684488 Msa0113020:intron 20.0%
!! TTAAAAAAAAGACATTGCAA+AGG - chr1_3:28684563-28684582 None:intergenic 20.0%
!!! TCAAAAACATTAGACATTTT+GGG + chr1_3:28685164-28685183 Msa0113020:intron 20.0%
!!! TATAATTGCTTTGTTTTCTT+AGG + chr1_3:28685660-28685679 Msa0113020:intron 20.0%
!! AGGTCAATATATAAGAAATT+GGG - chr1_3:28685712-28685731 None:intergenic 20.0%
!! AAGGTCAATATATAAGAAAT+TGG - chr1_3:28685713-28685732 None:intergenic 20.0%
!! TAAAAATAAACAACCATGTA+CGG + chr1_3:28685799-28685818 Msa0113020:intron 20.0%
!! TACGGATTTATTATCATTAA+TGG + chr1_3:28685817-28685836 Msa0113020:intron 20.0%
!!! TTGTTTGTTAGAAACTAAAA+CGG + chr1_3:28686200-28686219 Msa0113020:intron 20.0%
!! CATTACTAGTTAAAATTCAT+TGG + chr1_3:28686268-28686287 Msa0113020:intron 20.0%
!! TATTTACAAGAGAAACATTT+GGG - chr1_3:28687239-28687258 None:intergenic 20.0%
!! ATTAACAGAAAACATATTCA+AGG + chr1_3:28687277-28687296 Msa0113020:intron 20.0%
!!! ATCATGTGTAACAAATTTTA+AGG + chr1_3:28687840-28687859 Msa0113020:intron 20.0%
!! ATTCAACATATCTATAAACA+AGG - chr1_3:28688059-28688078 None:intergenic 20.0%
!!! AAAAGGCATAATATATTTAG+TGG + chr1_3:28688139-28688158 Msa0113020:CDS 20.0%
!! TATATTTAGTGGAAATTTAG+TGG + chr1_3:28688150-28688169 Msa0113020:CDS 20.0%
!! ATTATCAAAATTATGTGTTC+AGG + chr1_3:28688596-28688615 Msa0113020:intron 20.0%
!! TTATCAAAATTATGTGTTCA+GGG + chr1_3:28688597-28688616 Msa0113020:intron 20.0%
!!! TCGAAATTGTCTAATAATTT+TGG + chr1_3:28688954-28688973 Msa0113020:intron 20.0%
!! TCTTCTTGTAATGATAATAT+TGG + chr1_3:28682096-28682115 Msa0113020:CDS 20.0%
!! CTTCTTGTAATGATAATATT+GGG + chr1_3:28682097-28682116 Msa0113020:CDS 20.0%
!! AGGAAAGAGAAAAATTAATT+TGG + chr1_3:28682307-28682326 Msa0113020:intron 20.0%
!! CGAGAAATATGAAATTAAAA+TGG - chr1_3:28682380-28682399 None:intergenic 20.0%
!!! TTGATAACATAATCCTATAT+GGG - chr1_3:28682995-28683014 None:intergenic 20.0%
!!! TTTGATAACATAATCCTATA+TGG - chr1_3:28682996-28683015 None:intergenic 20.0%
!! AAATTGAATTATTATCTCCA+AGG + chr1_3:28683141-28683160 Msa0113020:CDS 20.0%
!! TAACATATCTAAGGAAATAT+CGG - chr1_3:28683639-28683658 None:intergenic 20.0%
!! TTCCTTAGATATGTTATTAT+CGG + chr1_3:28683643-28683662 Msa0113020:intron 20.0%
!!! CATTATCTAAGTTCATTTTA+CGG - chr1_3:28683711-28683730 None:intergenic 20.0%
!! GTATACATTCATTATGTTAT+AGG - chr1_3:28683751-28683770 None:intergenic 20.0%
!!! AATTCTAGACACTTTTAATT+TGG + chr1_3:28684469-28684488 Msa0113020:intron 20.0%
!! TTAAAAAAAAGACATTGCAA+AGG - chr1_3:28684563-28684582 None:intergenic 20.0%
!!! TCAAAAACATTAGACATTTT+GGG + chr1_3:28685164-28685183 Msa0113020:intron 20.0%
!!! TATAATTGCTTTGTTTTCTT+AGG + chr1_3:28685660-28685679 Msa0113020:intron 20.0%
!! AGGTCAATATATAAGAAATT+GGG - chr1_3:28685712-28685731 None:intergenic 20.0%
!! AAGGTCAATATATAAGAAAT+TGG - chr1_3:28685713-28685732 None:intergenic 20.0%
!! TAAAAATAAACAACCATGTA+CGG + chr1_3:28685799-28685818 Msa0113020:intron 20.0%
!! TACGGATTTATTATCATTAA+TGG + chr1_3:28685817-28685836 Msa0113020:intron 20.0%
!!! TTGTTTGTTAGAAACTAAAA+CGG + chr1_3:28686200-28686219 Msa0113020:intron 20.0%
!! CATTACTAGTTAAAATTCAT+TGG + chr1_3:28686268-28686287 Msa0113020:intron 20.0%
!! TATTTACAAGAGAAACATTT+GGG - chr1_3:28687239-28687258 None:intergenic 20.0%
!! ATTAACAGAAAACATATTCA+AGG + chr1_3:28687277-28687296 Msa0113020:intron 20.0%
!!! ATCATGTGTAACAAATTTTA+AGG + chr1_3:28687840-28687859 Msa0113020:intron 20.0%
!! ATTCAACATATCTATAAACA+AGG - chr1_3:28688059-28688078 None:intergenic 20.0%
!!! AAAAGGCATAATATATTTAG+TGG + chr1_3:28688139-28688158 Msa0113020:CDS 20.0%
!! TATATTTAGTGGAAATTTAG+TGG + chr1_3:28688150-28688169 Msa0113020:CDS 20.0%
!! ATTATCAAAATTATGTGTTC+AGG + chr1_3:28688596-28688615 Msa0113020:intron 20.0%
!! TTATCAAAATTATGTGTTCA+GGG + chr1_3:28688597-28688616 Msa0113020:intron 20.0%
!!! TCGAAATTGTCTAATAATTT+TGG + chr1_3:28688954-28688973 Msa0113020:intron 20.0%
!!! AAAATGTTTTGGATACAACT+TGG + chr1_3:28681656-28681675 Msa0113020:CDS 25.0%
!!! CTTTTAGTTTTCCAATACAA+AGG + chr1_3:28681711-28681730 Msa0113020:intron 25.0%
! TATGTCATTATACTAGATGA+TGG + chr1_3:28681747-28681766 Msa0113020:CDS 25.0%
!! TATACTAGATGATGGTAAAT+TGG + chr1_3:28681755-28681774 Msa0113020:CDS 25.0%
! AAGTGTTAACAATTAACCTA+AGG + chr1_3:28682485-28682504 Msa0113020:intron 25.0%
! TTATCTTAACATGTATCCTT+AGG - chr1_3:28682504-28682523 None:intergenic 25.0%
! AATGTCTCTAAATAATTTGG+TGG + chr1_3:28682560-28682579 Msa0113020:intron 25.0%
! GAATCTATAGAAACATGAAA+TGG - chr1_3:28682671-28682690 None:intergenic 25.0%
! TACATAATAAGTAATCCTAC+CGG - chr1_3:28682752-28682771 None:intergenic 25.0%
! GCAGATATATAAATATAGGA+CGG + chr1_3:28682791-28682810 Msa0113020:intron 25.0%
! CAGATATATAAATATAGGAC+GGG + chr1_3:28682792-28682811 Msa0113020:intron 25.0%
! AGTAAACATGAAGATTTACA+TGG + chr1_3:28683075-28683094 Msa0113020:CDS 25.0%
! AGATTTACATGGAAAATTTG+TGG + chr1_3:28683086-28683105 Msa0113020:CDS 25.0%
!! AGTGTTTTACTAAACATCTA+GGG - chr1_3:28683482-28683501 None:intergenic 25.0%
!! AAGTGTTTTACTAAACATCT+AGG - chr1_3:28683483-28683502 None:intergenic 25.0%
! AACATATCTAAGGAAATATC+GGG - chr1_3:28683638-28683657 None:intergenic 25.0%
! AACCGATAATAACATATCTA+AGG - chr1_3:28683648-28683667 None:intergenic 25.0%
!! ATGTTATTATCGGTTATGTA+TGG + chr1_3:28683653-28683672 Msa0113020:intron 25.0%
!! TGTTATTATCGGTTATGTAT+GGG + chr1_3:28683654-28683673 Msa0113020:intron 25.0%
! TGTCATGAATATGTATGTTT+CGG + chr1_3:28683907-28683926 Msa0113020:intron 25.0%
!! TTTACGTACCTTACAATTTT+TGG + chr1_3:28684525-28684544 Msa0113020:intron 25.0%
!! TTACGTACCTTACAATTTTT+GGG + chr1_3:28684526-28684545 Msa0113020:intron 25.0%
! CAGTTGACAAGATAATATAA+AGG - chr1_3:28684590-28684609 None:intergenic 25.0%
! AAGTTTGACTAAAAAAGTTC+GGG - chr1_3:28684674-28684693 None:intergenic 25.0%
! GAAGTTTGACTAAAAAAGTT+CGG - chr1_3:28684675-28684694 None:intergenic 25.0%
! GTTGAGTTAAGATTCATTAA+CGG + chr1_3:28684870-28684889 Msa0113020:intron 25.0%
!!! AATGTTTTTGAGAAAATGCT+TGG - chr1_3:28685155-28685174 None:intergenic 25.0%
!! CTCAAAAACATTAGACATTT+TGG + chr1_3:28685163-28685182 Msa0113020:intron 25.0%
!! TTTGGGTCTAAAATATAAAC+TGG + chr1_3:28685181-28685200 Msa0113020:intron 25.0%
! AATGATGAATGTGAATTGAA+GGG - chr1_3:28685230-28685249 None:intergenic 25.0%
! AAATGATGAATGTGAATTGA+AGG - chr1_3:28685231-28685250 None:intergenic 25.0%
! AATCGAAAGAATGAATGAAA+AGG - chr1_3:28685395-28685414 None:intergenic 25.0%
! TAATTGTGTATCACACTATT+TGG + chr1_3:28685455-28685474 Msa0113020:intron 25.0%
! AGATAGCATAAACTGAAAAT+GGG - chr1_3:28685516-28685535 None:intergenic 25.0%
! AAGATAGCATAAACTGAAAA+TGG - chr1_3:28685517-28685536 None:intergenic 25.0%
! AAAATTGACAACAGTGTTAT+TGG + chr1_3:28685557-28685576 Msa0113020:intron 25.0%
! AATGATAATAAATCCGTACA+TGG - chr1_3:28685815-28685834 None:intergenic 25.0%
! TCATTATTCATACTTGCTTT+AGG + chr1_3:28686023-28686042 Msa0113020:intron 25.0%
!!! CTTTTAGTTTTCCAATACAA+AGG + chr1_3:28681711-28681730 Msa0113020:intron 25.0%
!! TTGATTTTCTTTTTCTTGAG+GGG - chr1_3:28686669-28686688 None:intergenic 25.0%
!!! GTTGATTTTCTTTTTCTTGA+GGG - chr1_3:28686670-28686689 None:intergenic 25.0%
!!! AGTTGATTTTCTTTTTCTTG+AGG - chr1_3:28686671-28686690 None:intergenic 25.0%
! AATTTGGATGCATTAAAAAG+TGG - chr1_3:28686834-28686853 None:intergenic 25.0%
! AAGCATGTACTATTGTAATT+TGG - chr1_3:28686850-28686869 None:intergenic 25.0%
!!! TAGTTTTTAAAGTTTTGCAG+AGG + chr1_3:28686956-28686975 Msa0113020:intron 25.0%
! AATGCACAAAAACTAAAGAT+AGG + chr1_3:28687018-28687037 Msa0113020:CDS 25.0%
! TTATAACCTTCAATGTGATA+TGG - chr1_3:28687107-28687126 None:intergenic 25.0%
! CATTGAAGGTTATAATAGAT+TGG + chr1_3:28687112-28687131 Msa0113020:CDS 25.0%
! TATTGCTGGAAAAAAAGTAA+AGG - chr1_3:28687145-28687164 None:intergenic 25.0%
! ATTTACAAGAGAAACATTTG+GGG - chr1_3:28687238-28687257 None:intergenic 25.0%
! CTATTTACAAGAGAAACATT+TGG - chr1_3:28687240-28687259 None:intergenic 25.0%
! TTAAGTATATGTAATGTGCA+TGG - chr1_3:28687426-28687445 None:intergenic 25.0%
!!! TATTCTTTTGAAAACCATCT+AGG - chr1_3:28687502-28687521 None:intergenic 25.0%
! AGTAGTATGTTTACATTACA+TGG - chr1_3:28687882-28687901 None:intergenic 25.0%
! TTGAATTTGTCGTGTAAATT+CGG - chr1_3:28687986-28688005 None:intergenic 25.0%
!! TTTTGTAACATCATTAGACA+AGG + chr1_3:28688009-28688028 Msa0113020:CDS 25.0%
! TTTGTTCTTATATATGCAGT+TGG + chr1_3:28688093-28688112 Msa0113020:intron 25.0%
!! TTTTTACAATCACTCACAAT+TGG + chr1_3:28688416-28688435 Msa0113020:intron 25.0%
!! TTTATATTTTCAGAGGCAAA+GGG - chr1_3:28688708-28688727 None:intergenic 25.0%
!! CTTCATGTTTATATTTTCAG+AGG - chr1_3:28688715-28688734 None:intergenic 25.0%
! GAATAACATAACTACTTTAG+AGG + chr1_3:28688847-28688866 Msa0113020:intron 25.0%
! TATTCTTTCGAAAATAGAGT+TGG - chr1_3:28689025-28689044 None:intergenic 25.0%
!!! AAAATGTTTTGGATACAACT+TGG + chr1_3:28681656-28681675 Msa0113020:CDS 25.0%
!!! CTTTTAGTTTTCCAATACAA+AGG + chr1_3:28681711-28681730 Msa0113020:intron 25.0%
! TATGTCATTATACTAGATGA+TGG + chr1_3:28681747-28681766 Msa0113020:CDS 25.0%
!! TATACTAGATGATGGTAAAT+TGG + chr1_3:28681755-28681774 Msa0113020:CDS 25.0%
! AAGTGTTAACAATTAACCTA+AGG + chr1_3:28682485-28682504 Msa0113020:intron 25.0%
! TTATCTTAACATGTATCCTT+AGG - chr1_3:28682504-28682523 None:intergenic 25.0%
! AATGTCTCTAAATAATTTGG+TGG + chr1_3:28682560-28682579 Msa0113020:intron 25.0%
! GAATCTATAGAAACATGAAA+TGG - chr1_3:28682671-28682690 None:intergenic 25.0%
! TACATAATAAGTAATCCTAC+CGG - chr1_3:28682752-28682771 None:intergenic 25.0%
! GCAGATATATAAATATAGGA+CGG + chr1_3:28682791-28682810 Msa0113020:intron 25.0%
! CAGATATATAAATATAGGAC+GGG + chr1_3:28682792-28682811 Msa0113020:intron 25.0%
! AGTAAACATGAAGATTTACA+TGG + chr1_3:28683075-28683094 Msa0113020:CDS 25.0%
! AGATTTACATGGAAAATTTG+TGG + chr1_3:28683086-28683105 Msa0113020:CDS 25.0%
!! AGTGTTTTACTAAACATCTA+GGG - chr1_3:28683482-28683501 None:intergenic 25.0%
!! AAGTGTTTTACTAAACATCT+AGG - chr1_3:28683483-28683502 None:intergenic 25.0%
! AACATATCTAAGGAAATATC+GGG - chr1_3:28683638-28683657 None:intergenic 25.0%
! AACCGATAATAACATATCTA+AGG - chr1_3:28683648-28683667 None:intergenic 25.0%
!! ATGTTATTATCGGTTATGTA+TGG + chr1_3:28683653-28683672 Msa0113020:intron 25.0%
!! TGTTATTATCGGTTATGTAT+GGG + chr1_3:28683654-28683673 Msa0113020:intron 25.0%
! TGTCATGAATATGTATGTTT+CGG + chr1_3:28683907-28683926 Msa0113020:intron 25.0%
!! TTTACGTACCTTACAATTTT+TGG + chr1_3:28684525-28684544 Msa0113020:intron 25.0%
!! TTACGTACCTTACAATTTTT+GGG + chr1_3:28684526-28684545 Msa0113020:intron 25.0%
! CAGTTGACAAGATAATATAA+AGG - chr1_3:28684590-28684609 None:intergenic 25.0%
! AAGTTTGACTAAAAAAGTTC+GGG - chr1_3:28684674-28684693 None:intergenic 25.0%
! GAAGTTTGACTAAAAAAGTT+CGG - chr1_3:28684675-28684694 None:intergenic 25.0%
! GTTGAGTTAAGATTCATTAA+CGG + chr1_3:28684870-28684889 Msa0113020:intron 25.0%
!!! AATGTTTTTGAGAAAATGCT+TGG - chr1_3:28685155-28685174 None:intergenic 25.0%
!! CTCAAAAACATTAGACATTT+TGG + chr1_3:28685163-28685182 Msa0113020:intron 25.0%
!! TTTGGGTCTAAAATATAAAC+TGG + chr1_3:28685181-28685200 Msa0113020:intron 25.0%
! AATGATGAATGTGAATTGAA+GGG - chr1_3:28685230-28685249 None:intergenic 25.0%
! AAATGATGAATGTGAATTGA+AGG - chr1_3:28685231-28685250 None:intergenic 25.0%
! AATCGAAAGAATGAATGAAA+AGG - chr1_3:28685395-28685414 None:intergenic 25.0%
! TAATTGTGTATCACACTATT+TGG + chr1_3:28685455-28685474 Msa0113020:intron 25.0%
! AGATAGCATAAACTGAAAAT+GGG - chr1_3:28685516-28685535 None:intergenic 25.0%
! AAGATAGCATAAACTGAAAA+TGG - chr1_3:28685517-28685536 None:intergenic 25.0%
! AAAATTGACAACAGTGTTAT+TGG + chr1_3:28685557-28685576 Msa0113020:intron 25.0%
! AATGATAATAAATCCGTACA+TGG - chr1_3:28685815-28685834 None:intergenic 25.0%
! TCATTATTCATACTTGCTTT+AGG + chr1_3:28686023-28686042 Msa0113020:intron 25.0%
!!! CTTTTAGTTTTCCAATACAA+AGG + chr1_3:28681711-28681730 Msa0113020:intron 25.0%
!! TTGATTTTCTTTTTCTTGAG+GGG - chr1_3:28686669-28686688 None:intergenic 25.0%
!!! GTTGATTTTCTTTTTCTTGA+GGG - chr1_3:28686670-28686689 None:intergenic 25.0%
!!! AGTTGATTTTCTTTTTCTTG+AGG - chr1_3:28686671-28686690 None:intergenic 25.0%
! AATTTGGATGCATTAAAAAG+TGG - chr1_3:28686834-28686853 None:intergenic 25.0%
! AAGCATGTACTATTGTAATT+TGG - chr1_3:28686850-28686869 None:intergenic 25.0%
!!! TAGTTTTTAAAGTTTTGCAG+AGG + chr1_3:28686956-28686975 Msa0113020:intron 25.0%
! AATGCACAAAAACTAAAGAT+AGG + chr1_3:28687018-28687037 Msa0113020:CDS 25.0%
! TTATAACCTTCAATGTGATA+TGG - chr1_3:28687107-28687126 None:intergenic 25.0%
! CATTGAAGGTTATAATAGAT+TGG + chr1_3:28687112-28687131 Msa0113020:CDS 25.0%
! TATTGCTGGAAAAAAAGTAA+AGG - chr1_3:28687145-28687164 None:intergenic 25.0%
! ATTTACAAGAGAAACATTTG+GGG - chr1_3:28687238-28687257 None:intergenic 25.0%
! CTATTTACAAGAGAAACATT+TGG - chr1_3:28687240-28687259 None:intergenic 25.0%
! TTAAGTATATGTAATGTGCA+TGG - chr1_3:28687426-28687445 None:intergenic 25.0%
!!! TATTCTTTTGAAAACCATCT+AGG - chr1_3:28687502-28687521 None:intergenic 25.0%
! AGTAGTATGTTTACATTACA+TGG - chr1_3:28687882-28687901 None:intergenic 25.0%
! TTGAATTTGTCGTGTAAATT+CGG - chr1_3:28687986-28688005 None:intergenic 25.0%
!! TTTTGTAACATCATTAGACA+AGG + chr1_3:28688009-28688028 Msa0113020:CDS 25.0%
! TTTGTTCTTATATATGCAGT+TGG + chr1_3:28688093-28688112 Msa0113020:intron 25.0%
!! TTTTTACAATCACTCACAAT+TGG + chr1_3:28688416-28688435 Msa0113020:intron 25.0%
!! TTTATATTTTCAGAGGCAAA+GGG - chr1_3:28688708-28688727 None:intergenic 25.0%
!! CTTCATGTTTATATTTTCAG+AGG - chr1_3:28688715-28688734 None:intergenic 25.0%
! GAATAACATAACTACTTTAG+AGG + chr1_3:28688847-28688866 Msa0113020:intron 25.0%
! TATTCTTTCGAAAATAGAGT+TGG - chr1_3:28689025-28689044 None:intergenic 25.0%
! ATGATGTTTGGTTTCTTGAT+TGG + chr1_3:28681681-28681700 Msa0113020:intron 30.0%
!! TTAGTTTTCCAATACAAAGG+AGG + chr1_3:28681714-28681733 Msa0113020:intron 30.0%
! TAGTTTTCCAATACAAAGGA+GGG + chr1_3:28681715-28681734 Msa0113020:intron 30.0%
TACAATGCTTGTTTGAATCA+TGG - chr1_3:28681815-28681834 None:intergenic 30.0%
! ATATTAACTTTTGTCCCATG+AGG - chr1_3:28681912-28681931 None:intergenic 30.0%
! CTTTTTCTTTCTTGCTTTCT+TGG + chr1_3:28681973-28681992 Msa0113020:intron 30.0%
GGTCAATTTAAAGAAGTTAG+AGG - chr1_3:28682177-28682196 None:intergenic 30.0%
! TGATCACCTTATTTCTTTAG+AGG + chr1_3:28682247-28682266 Msa0113020:intron 30.0%
CAAACTTGAATGACAGAAAA+AGG + chr1_3:28682287-28682306 Msa0113020:intron 30.0%
! CATGTTTCTATAGATTCAGA+AGG + chr1_3:28682674-28682693 Msa0113020:intron 30.0%
GTGTTATGTTTCATTACATC+AGG - chr1_3:28682701-28682720 None:intergenic 30.0%
CAAGAAAAAGTTACTACTCT+TGG - chr1_3:28682856-28682875 None:intergenic 30.0%
!! CAAGAGTAGTAACTTTTTCT+TGG + chr1_3:28682854-28682873 Msa0113020:intron 30.0%
CATGATAGATAAACCCATAT+AGG + chr1_3:28682979-28682998 Msa0113020:intron 30.0%
TGTTTACTCAAGAACTCATT+TGG - chr1_3:28683063-28683082 None:intergenic 30.0%
AAATTTGTGGAGTTGAAAGT+TGG + chr1_3:28683099-28683118 Msa0113020:CDS 30.0%
GAAGAATGCAAATTGAAGTT+TGG + chr1_3:28683198-28683217 Msa0113020:CDS 30.0%
TTGATACAACGTTTGCAAAA+CGG + chr1_3:28683313-28683332 Msa0113020:intron 30.0%
! TTTAGAGCTTCTGAAAATCA+CGG + chr1_3:28683345-28683364 Msa0113020:intron 30.0%
! ATTTCTTTGTTTCGTTCTTG+AGG + chr1_3:28683455-28683474 Msa0113020:intron 30.0%
! TTTCTTTGTTTCGTTCTTGA+GGG + chr1_3:28683456-28683475 Msa0113020:intron 30.0%
! GTTATGTATGGGATTGTTTT+CGG + chr1_3:28683665-28683684 Msa0113020:intron 30.0%
AGGTTCGTATAATTCAACAA+AGG - chr1_3:28684011-28684030 None:intergenic 30.0%
TGAATTATACGAACCTATGA+CGG + chr1_3:28684015-28684034 Msa0113020:intron 30.0%
GTTGTATGAGTTTCATTAGA+CGG + chr1_3:28684326-28684345 Msa0113020:intron 30.0%
AATACGAAACAACATAAGTC+GGG - chr1_3:28684404-28684423 None:intergenic 30.0%
CAATACGAAACAACATAAGT+CGG - chr1_3:28684405-28684424 None:intergenic 30.0%
! AGAGCGTTAAAAACTGATAT+TGG - chr1_3:28684442-28684461 None:intergenic 30.0%
! TACGTACCTTACAATTTTTG+GGG + chr1_3:28684527-28684546 Msa0113020:intron 30.0%
TTGAAACCCCAAAAATTGTA+AGG - chr1_3:28684536-28684555 None:intergenic 30.0%
GAAGTCAGAAAAAATAGCTT+GGG - chr1_3:28684783-28684802 None:intergenic 30.0%
TGAAGTCAGAAAAAATAGCT+TGG - chr1_3:28684784-28684803 None:intergenic 30.0%
AACACAAACAAAAAGTGATC+TGG + chr1_3:28685045-28685064 Msa0113020:intron 30.0%
AATTGAAGGGATTGTATTGT+GGG - chr1_3:28685217-28685236 None:intergenic 30.0%
! CATACATTGTTTCTCACAAA+TGG + chr1_3:28685616-28685635 Msa0113020:intron 30.0%
!!! GCTTTGTTTTCTTAGGTATT+TGG + chr1_3:28685667-28685686 Msa0113020:intron 30.0%
! TGTTTTCTTAGGTATTTGGA+TGG + chr1_3:28685671-28685690 Msa0113020:intron 30.0%
! GTTTTCTTAGGTATTTGGAT+GGG + chr1_3:28685672-28685691 Msa0113020:intron 30.0%
! TTTTCTTAGGTATTTGGATG+GGG + chr1_3:28685673-28685692 Msa0113020:intron 30.0%
! TGTTTAAGGTTTGTAGACAA+AGG + chr1_3:28685920-28685939 Msa0113020:intron 30.0%
GTGCAATAATAGAGCAAAAA+TGG - chr1_3:28685996-28686015 None:intergenic 30.0%
! ATGAAGTTTGCTTAATCAGT+TGG + chr1_3:28686153-28686172 Msa0113020:intron 30.0%
GTCTGAGTTCAAAATGAATT+GGG + chr1_3:28686386-28686405 Msa0113020:CDS 30.0%
!! TTAGTTTTCCAATACAAAGG+AGG + chr1_3:28681714-28681733 Msa0113020:intron 30.0%
! TAGTTTTCCAATACAAAGGA+GGG + chr1_3:28681715-28681734 Msa0113020:intron 30.0%
TATATTGGATGACAGTAGTT+TGG + chr1_3:28686521-28686540 Msa0113020:intron 30.0%
CAATGATGAACAAGAAACTA+AGG + chr1_3:28686569-28686588 Msa0113020:intron 30.0%
!! AGAGGCTTTCATTTTTCTAT+AGG + chr1_3:28687183-28687202 Msa0113020:intron 30.0%
ATCTAGGTATTATCTGTTTC+AGG - chr1_3:28687486-28687505 None:intergenic 30.0%
TGAAACAGATAATACCTAGA+TGG + chr1_3:28687485-28687504 Msa0113020:intron 30.0%
!! TGGTTGAAAGTCATTTTCAA+AGG + chr1_3:28687633-28687652 Msa0113020:intron 30.0%
AAATACCTTGAAAATGCTCT+GGG - chr1_3:28687759-28687778 None:intergenic 30.0%
ATGTTTACATTACATGGACA+AGG - chr1_3:28687876-28687895 None:intergenic 30.0%
GAATTTACACGACAAATTCA+AGG + chr1_3:28687985-28688004 Msa0113020:CDS 30.0%
TATGATCAACATCTCGATTA+TGG + chr1_3:28688214-28688233 Msa0113020:CDS 30.0%
ATGATCAACATCTCGATTAT+GGG + chr1_3:28688215-28688234 Msa0113020:CDS 30.0%
ATGAATGCAAAGTGAAGATT+AGG + chr1_3:28688548-28688567 Msa0113020:intron 30.0%
!!! TGAGTGCTTTTAGAATTTTC+AGG + chr1_3:28688673-28688692 Msa0113020:intron 30.0%
! GTTTATATTTTCAGAGGCAA+AGG - chr1_3:28688709-28688728 None:intergenic 30.0%
GAAGAAAATAAACTGAATGG+TGG - chr1_3:28688785-28688804 None:intergenic 30.0%
!! CATTCAGTTTATTTTCTTCC+CGG + chr1_3:28688786-28688805 Msa0113020:intron 30.0%
!!! AAATTTGGACAGTTTTAGGT+TGG - chr1_3:28688820-28688839 None:intergenic 30.0%
TGTTATTCACACGTGAAATT+TGG - chr1_3:28688835-28688854 None:intergenic 30.0%
CGACTTTGATGTAAAAGTTT+GGG - chr1_3:28688885-28688904 None:intergenic 30.0%
! CCAAACTTTTACATCAAAGT+CGG + chr1_3:28688883-28688902 Msa0113020:intron 30.0%
! TTAGAATGACTTGGATAACA+AGG - chr1_3:28688911-28688930 None:intergenic 30.0%
!! ATAGCTTTGTTAGAATGACT+TGG - chr1_3:28688920-28688939 None:intergenic 30.0%
TGGTTGGAATTTATTTGTGA+AGG + chr1_3:28689129-28689148 Msa0113020:CDS 30.0%
! ATGATGTTTGGTTTCTTGAT+TGG + chr1_3:28681681-28681700 Msa0113020:intron 30.0%
!! TTAGTTTTCCAATACAAAGG+AGG + chr1_3:28681714-28681733 Msa0113020:intron 30.0%
! TAGTTTTCCAATACAAAGGA+GGG + chr1_3:28681715-28681734 Msa0113020:intron 30.0%
TACAATGCTTGTTTGAATCA+TGG - chr1_3:28681815-28681834 None:intergenic 30.0%
! ATATTAACTTTTGTCCCATG+AGG - chr1_3:28681912-28681931 None:intergenic 30.0%
! CTTTTTCTTTCTTGCTTTCT+TGG + chr1_3:28681973-28681992 Msa0113020:intron 30.0%
GGTCAATTTAAAGAAGTTAG+AGG - chr1_3:28682177-28682196 None:intergenic 30.0%
! TGATCACCTTATTTCTTTAG+AGG + chr1_3:28682247-28682266 Msa0113020:intron 30.0%
CAAACTTGAATGACAGAAAA+AGG + chr1_3:28682287-28682306 Msa0113020:intron 30.0%
! CATGTTTCTATAGATTCAGA+AGG + chr1_3:28682674-28682693 Msa0113020:intron 30.0%
GTGTTATGTTTCATTACATC+AGG - chr1_3:28682701-28682720 None:intergenic 30.0%
CAAGAAAAAGTTACTACTCT+TGG - chr1_3:28682856-28682875 None:intergenic 30.0%
!! CAAGAGTAGTAACTTTTTCT+TGG + chr1_3:28682854-28682873 Msa0113020:intron 30.0%
CATGATAGATAAACCCATAT+AGG + chr1_3:28682979-28682998 Msa0113020:intron 30.0%
TGTTTACTCAAGAACTCATT+TGG - chr1_3:28683063-28683082 None:intergenic 30.0%
AAATTTGTGGAGTTGAAAGT+TGG + chr1_3:28683099-28683118 Msa0113020:CDS 30.0%
GAAGAATGCAAATTGAAGTT+TGG + chr1_3:28683198-28683217 Msa0113020:CDS 30.0%
TTGATACAACGTTTGCAAAA+CGG + chr1_3:28683313-28683332 Msa0113020:intron 30.0%
! TTTAGAGCTTCTGAAAATCA+CGG + chr1_3:28683345-28683364 Msa0113020:intron 30.0%
! ATTTCTTTGTTTCGTTCTTG+AGG + chr1_3:28683455-28683474 Msa0113020:intron 30.0%
! TTTCTTTGTTTCGTTCTTGA+GGG + chr1_3:28683456-28683475 Msa0113020:intron 30.0%
! GTTATGTATGGGATTGTTTT+CGG + chr1_3:28683665-28683684 Msa0113020:intron 30.0%
AGGTTCGTATAATTCAACAA+AGG - chr1_3:28684011-28684030 None:intergenic 30.0%
TGAATTATACGAACCTATGA+CGG + chr1_3:28684015-28684034 Msa0113020:intron 30.0%
GTTGTATGAGTTTCATTAGA+CGG + chr1_3:28684326-28684345 Msa0113020:intron 30.0%
AATACGAAACAACATAAGTC+GGG - chr1_3:28684404-28684423 None:intergenic 30.0%
CAATACGAAACAACATAAGT+CGG - chr1_3:28684405-28684424 None:intergenic 30.0%
! AGAGCGTTAAAAACTGATAT+TGG - chr1_3:28684442-28684461 None:intergenic 30.0%
! TACGTACCTTACAATTTTTG+GGG + chr1_3:28684527-28684546 Msa0113020:intron 30.0%
TTGAAACCCCAAAAATTGTA+AGG - chr1_3:28684536-28684555 None:intergenic 30.0%
GAAGTCAGAAAAAATAGCTT+GGG - chr1_3:28684783-28684802 None:intergenic 30.0%
TGAAGTCAGAAAAAATAGCT+TGG - chr1_3:28684784-28684803 None:intergenic 30.0%
AACACAAACAAAAAGTGATC+TGG + chr1_3:28685045-28685064 Msa0113020:intron 30.0%
AATTGAAGGGATTGTATTGT+GGG - chr1_3:28685217-28685236 None:intergenic 30.0%
! CATACATTGTTTCTCACAAA+TGG + chr1_3:28685616-28685635 Msa0113020:intron 30.0%
!!! GCTTTGTTTTCTTAGGTATT+TGG + chr1_3:28685667-28685686 Msa0113020:intron 30.0%
! TGTTTTCTTAGGTATTTGGA+TGG + chr1_3:28685671-28685690 Msa0113020:intron 30.0%
! GTTTTCTTAGGTATTTGGAT+GGG + chr1_3:28685672-28685691 Msa0113020:intron 30.0%
! TTTTCTTAGGTATTTGGATG+GGG + chr1_3:28685673-28685692 Msa0113020:intron 30.0%
! TGTTTAAGGTTTGTAGACAA+AGG + chr1_3:28685920-28685939 Msa0113020:intron 30.0%
GTGCAATAATAGAGCAAAAA+TGG - chr1_3:28685996-28686015 None:intergenic 30.0%
! ATGAAGTTTGCTTAATCAGT+TGG + chr1_3:28686153-28686172 Msa0113020:intron 30.0%
GTCTGAGTTCAAAATGAATT+GGG + chr1_3:28686386-28686405 Msa0113020:CDS 30.0%
!! TTAGTTTTCCAATACAAAGG+AGG + chr1_3:28681714-28681733 Msa0113020:intron 30.0%
! TAGTTTTCCAATACAAAGGA+GGG + chr1_3:28681715-28681734 Msa0113020:intron 30.0%
TATATTGGATGACAGTAGTT+TGG + chr1_3:28686521-28686540 Msa0113020:intron 30.0%
CAATGATGAACAAGAAACTA+AGG + chr1_3:28686569-28686588 Msa0113020:intron 30.0%
!! AGAGGCTTTCATTTTTCTAT+AGG + chr1_3:28687183-28687202 Msa0113020:intron 30.0%
ATCTAGGTATTATCTGTTTC+AGG - chr1_3:28687486-28687505 None:intergenic 30.0%
TGAAACAGATAATACCTAGA+TGG + chr1_3:28687485-28687504 Msa0113020:intron 30.0%
!! TGGTTGAAAGTCATTTTCAA+AGG + chr1_3:28687633-28687652 Msa0113020:intron 30.0%
AAATACCTTGAAAATGCTCT+GGG - chr1_3:28687759-28687778 None:intergenic 30.0%
ATGTTTACATTACATGGACA+AGG - chr1_3:28687876-28687895 None:intergenic 30.0%
GAATTTACACGACAAATTCA+AGG + chr1_3:28687985-28688004 Msa0113020:CDS 30.0%
TATGATCAACATCTCGATTA+TGG + chr1_3:28688214-28688233 Msa0113020:CDS 30.0%
ATGATCAACATCTCGATTAT+GGG + chr1_3:28688215-28688234 Msa0113020:CDS 30.0%
ATGAATGCAAAGTGAAGATT+AGG + chr1_3:28688548-28688567 Msa0113020:intron 30.0%
!!! TGAGTGCTTTTAGAATTTTC+AGG + chr1_3:28688673-28688692 Msa0113020:intron 30.0%
! GTTTATATTTTCAGAGGCAA+AGG - chr1_3:28688709-28688728 None:intergenic 30.0%
GAAGAAAATAAACTGAATGG+TGG - chr1_3:28688785-28688804 None:intergenic 30.0%
!! CATTCAGTTTATTTTCTTCC+CGG + chr1_3:28688786-28688805 Msa0113020:intron 30.0%
!!! AAATTTGGACAGTTTTAGGT+TGG - chr1_3:28688820-28688839 None:intergenic 30.0%
TGTTATTCACACGTGAAATT+TGG - chr1_3:28688835-28688854 None:intergenic 30.0%
CGACTTTGATGTAAAAGTTT+GGG - chr1_3:28688885-28688904 None:intergenic 30.0%
! CCAAACTTTTACATCAAAGT+CGG + chr1_3:28688883-28688902 Msa0113020:intron 30.0%
! TTAGAATGACTTGGATAACA+AGG - chr1_3:28688911-28688930 None:intergenic 30.0%
!! ATAGCTTTGTTAGAATGACT+TGG - chr1_3:28688920-28688939 None:intergenic 30.0%
TGGTTGGAATTTATTTGTGA+AGG + chr1_3:28689129-28689148 Msa0113020:CDS 30.0%
! GATGATTCCAAGGAATTTTG+TGG + chr1_3:28681571-28681590 Msa0113020:CDS 35.0%
TACTTGTCCACAAAATTCCT+TGG - chr1_3:28681581-28681600 None:intergenic 35.0%
! GGAATTTTGTGGACAAGTAT+TGG + chr1_3:28681582-28681601 Msa0113020:CDS 35.0%
!! TTTGTGGACAAGTATTGGAA+AGG + chr1_3:28681587-28681606 Msa0113020:CDS 35.0%
! GATCTGAGTGCAAAATGTTT+TGG + chr1_3:28681645-28681664 Msa0113020:CDS 35.0%
!! TACAACTTGGTGATGATGTT+TGG + chr1_3:28681669-28681688 Msa0113020:intron 35.0%
! CACTCTCCTCTAAAGAAATA+AGG - chr1_3:28682256-28682275 None:intergenic 35.0%
! TCTGTCATTCAAGTTTGTGT+GGG - chr1_3:28682284-28682303 None:intergenic 35.0%
! TTCTGTCATTCAAGTTTGTG+TGG - chr1_3:28682285-28682304 None:intergenic 35.0%
ACCAGCAAACAAAAATTCAC+AGG + chr1_3:28682338-28682357 Msa0113020:intron 35.0%
!! ACCTGTGAATTTTTGTTTGC+TGG - chr1_3:28682342-28682361 None:intergenic 35.0%
TGTTGTGAATTCATCATAGC+CGG + chr1_3:28682730-28682749 Msa0113020:intron 35.0%
! GTGCTTTTGTATGTTGCAAA+CGG + chr1_3:28683395-28683414 Msa0113020:intron 35.0%
! TGCTTTTGTATGTTGCAAAC+GGG + chr1_3:28683396-28683415 Msa0113020:intron 35.0%
TTTAACGCTCTTGTACCAAA+CGG + chr1_3:28683530-28683549 Msa0113020:intron 35.0%
! TTCATTTTACGGAAAGTCTC+GGG - chr1_3:28683700-28683719 None:intergenic 35.0%
! GTTCATTTTACGGAAAGTCT+CGG - chr1_3:28683701-28683720 None:intergenic 35.0%
TTGATGCGTTTAACGTATCT+CGG + chr1_3:28683932-28683951 Msa0113020:intron 35.0%
CTATATATTACGTGTCATGG+CGG - chr1_3:28683982-28684001 None:intergenic 35.0%
TGCCTATATATTACGTGTCA+TGG - chr1_3:28683985-28684004 None:intergenic 35.0%
AACCTGAACAAAGAAGGAAA+GGG - chr1_3:28684183-28684202 None:intergenic 35.0%
! TTTTCTCCTTACCTTTGACA+CGG - chr1_3:28684216-28684235 None:intergenic 35.0%
CAAAGGTAAGGAGAAAACTA+CGG + chr1_3:28684219-28684238 Msa0113020:intron 35.0%
TTGGCCGTTACAATTATACT+TGG + chr1_3:28684488-28684507 Msa0113020:intron 35.0%
CCAGCCAAGTATAATTGTAA+CGG - chr1_3:28684495-28684514 None:intergenic 35.0%
TCAGAAAAAATAGCTTGGGT+GGG - chr1_3:28684779-28684798 None:intergenic 35.0%
GAATTGAAGGGATTGTATTG+TGG - chr1_3:28685218-28685237 None:intergenic 35.0%
TCAATGTCGAGTGTATACTA+TGG + chr1_3:28685264-28685283 Msa0113020:intron 35.0%
ACTCACAAAGTTGAATGGTT+TGG - chr1_3:28685323-28685342 None:intergenic 35.0%
TTGCAACTCACAAAGTTGAA+TGG - chr1_3:28685328-28685347 None:intergenic 35.0%
TACGAAGCAAACTTCATTCA+AGG - chr1_3:28685732-28685751 None:intergenic 35.0%
ACCATCATGAAAACAGTGTT+GGG - chr1_3:28685960-28685979 None:intergenic 35.0%
AACCATCATGAAAACAGTGT+TGG - chr1_3:28685961-28685980 None:intergenic 35.0%
! ATTTTGAACTCAGACCCATT+TGG - chr1_3:28686381-28686400 None:intergenic 35.0%
GGTCTGAGTTCAAAATGAAT+TGG + chr1_3:28686385-28686404 Msa0113020:CDS 35.0%
AAAATGAATTGGGTACAACG+CGG + chr1_3:28686396-28686415 Msa0113020:CDS 35.0%
! ATTTCTTAGCTTTCTTACCC+CGG - chr1_3:28687001-28687020 None:intergenic 35.0%
TGCACAAATTATCATCCCAA+TGG + chr1_3:28687053-28687072 Msa0113020:CDS 35.0%
GCACAAATTATCATCCCAAT+GGG + chr1_3:28687054-28687073 Msa0113020:CDS 35.0%
GATAATTTGACGGTGAAACT+AGG - chr1_3:28687083-28687102 None:intergenic 35.0%
GTGATATGGCGATAATTTGA+CGG - chr1_3:28687093-28687112 None:intergenic 35.0%
TTATCGCCATATCACATTGA+AGG + chr1_3:28687098-28687117 Msa0113020:CDS 35.0%
CAGTTAGGTACAAATATTGC+TGG - chr1_3:28687159-28687178 None:intergenic 35.0%
TTTGTACCTAACTGTGTAAG+AGG + chr1_3:28687165-28687184 Msa0113020:intron 35.0%
! GTATTATCTGTTTCAGGTCA+TGG - chr1_3:28687480-28687499 None:intergenic 35.0%
GAATGAGTTATTGCAACAGA+AGG + chr1_3:28687525-28687544 Msa0113020:CDS 35.0%
!! CAAGAGCAGTTTTATAATGC+AGG + chr1_3:28687609-28687628 Msa0113020:CDS 35.0%
!! AGCAGTTTTATAATGCAGGT+TGG + chr1_3:28687613-28687632 Msa0113020:intron 35.0%
AAGGAACATGACTTGAAAGT+TGG + chr1_3:28687652-28687671 Msa0113020:CDS 35.0%
TACTATTATCCCAACCACAA+AGG + chr1_3:28687726-28687745 Msa0113020:CDS 35.0%
GAAATACCTTGAAAATGCTC+TGG - chr1_3:28687760-28687779 None:intergenic 35.0%
TGAAAGTAGAAGAAGGAACA+TGG + chr1_3:28688176-28688195 Msa0113020:CDS 35.0%
TGATCAACATCTCGATTATG+GGG + chr1_3:28688216-28688235 Msa0113020:CDS 35.0%
AGAGAATGCAATGTGAAGAT+TGG + chr1_3:28688267-28688286 Msa0113020:intron 35.0%
TGTGCAAAATCATGTGTTCA+AGG + chr1_3:28688317-28688336 Msa0113020:intron 35.0%
CAAACGTTCTTCTAAACATC+TGG - chr1_3:28688354-28688373 None:intergenic 35.0%
AGCACTCATATTCTATACAG+TGG - chr1_3:28688661-28688680 None:intergenic 35.0%
CGGGAAGAAAATAAACTGAA+TGG - chr1_3:28688788-28688807 None:intergenic 35.0%
! CGTGAAATTTGGACAGTTTT+AGG - chr1_3:28688824-28688843 None:intergenic 35.0%
CCGACTTTGATGTAAAAGTT+TGG - chr1_3:28688886-28688905 None:intergenic 35.0%
AATACTCGACCAAGTTTGAA+GGG + chr1_3:28689041-28689060 Msa0113020:CDS 35.0%
! GATGATTCCAAGGAATTTTG+TGG + chr1_3:28681571-28681590 Msa0113020:CDS 35.0%
TACTTGTCCACAAAATTCCT+TGG - chr1_3:28681581-28681600 None:intergenic 35.0%
! GGAATTTTGTGGACAAGTAT+TGG + chr1_3:28681582-28681601 Msa0113020:CDS 35.0%
!! TTTGTGGACAAGTATTGGAA+AGG + chr1_3:28681587-28681606 Msa0113020:CDS 35.0%
! GATCTGAGTGCAAAATGTTT+TGG + chr1_3:28681645-28681664 Msa0113020:CDS 35.0%
!! TACAACTTGGTGATGATGTT+TGG + chr1_3:28681669-28681688 Msa0113020:intron 35.0%
! CACTCTCCTCTAAAGAAATA+AGG - chr1_3:28682256-28682275 None:intergenic 35.0%
! TCTGTCATTCAAGTTTGTGT+GGG - chr1_3:28682284-28682303 None:intergenic 35.0%
! TTCTGTCATTCAAGTTTGTG+TGG - chr1_3:28682285-28682304 None:intergenic 35.0%
ACCAGCAAACAAAAATTCAC+AGG + chr1_3:28682338-28682357 Msa0113020:intron 35.0%
!! ACCTGTGAATTTTTGTTTGC+TGG - chr1_3:28682342-28682361 None:intergenic 35.0%
TGTTGTGAATTCATCATAGC+CGG + chr1_3:28682730-28682749 Msa0113020:intron 35.0%
! GTGCTTTTGTATGTTGCAAA+CGG + chr1_3:28683395-28683414 Msa0113020:intron 35.0%
! TGCTTTTGTATGTTGCAAAC+GGG + chr1_3:28683396-28683415 Msa0113020:intron 35.0%
TTTAACGCTCTTGTACCAAA+CGG + chr1_3:28683530-28683549 Msa0113020:intron 35.0%
! TTCATTTTACGGAAAGTCTC+GGG - chr1_3:28683700-28683719 None:intergenic 35.0%
! GTTCATTTTACGGAAAGTCT+CGG - chr1_3:28683701-28683720 None:intergenic 35.0%
TTGATGCGTTTAACGTATCT+CGG + chr1_3:28683932-28683951 Msa0113020:intron 35.0%
CTATATATTACGTGTCATGG+CGG - chr1_3:28683982-28684001 None:intergenic 35.0%
TGCCTATATATTACGTGTCA+TGG - chr1_3:28683985-28684004 None:intergenic 35.0%
AACCTGAACAAAGAAGGAAA+GGG - chr1_3:28684183-28684202 None:intergenic 35.0%
! TTTTCTCCTTACCTTTGACA+CGG - chr1_3:28684216-28684235 None:intergenic 35.0%
CAAAGGTAAGGAGAAAACTA+CGG + chr1_3:28684219-28684238 Msa0113020:intron 35.0%
TTGGCCGTTACAATTATACT+TGG + chr1_3:28684488-28684507 Msa0113020:intron 35.0%
CCAGCCAAGTATAATTGTAA+CGG - chr1_3:28684495-28684514 None:intergenic 35.0%
TCAGAAAAAATAGCTTGGGT+GGG - chr1_3:28684779-28684798 None:intergenic 35.0%
GAATTGAAGGGATTGTATTG+TGG - chr1_3:28685218-28685237 None:intergenic 35.0%
TCAATGTCGAGTGTATACTA+TGG + chr1_3:28685264-28685283 Msa0113020:intron 35.0%
ACTCACAAAGTTGAATGGTT+TGG - chr1_3:28685323-28685342 None:intergenic 35.0%
TTGCAACTCACAAAGTTGAA+TGG - chr1_3:28685328-28685347 None:intergenic 35.0%
TACGAAGCAAACTTCATTCA+AGG - chr1_3:28685732-28685751 None:intergenic 35.0%
ACCATCATGAAAACAGTGTT+GGG - chr1_3:28685960-28685979 None:intergenic 35.0%
AACCATCATGAAAACAGTGT+TGG - chr1_3:28685961-28685980 None:intergenic 35.0%
! ATTTTGAACTCAGACCCATT+TGG - chr1_3:28686381-28686400 None:intergenic 35.0%
GGTCTGAGTTCAAAATGAAT+TGG + chr1_3:28686385-28686404 Msa0113020:CDS 35.0%
AAAATGAATTGGGTACAACG+CGG + chr1_3:28686396-28686415 Msa0113020:CDS 35.0%
! ATTTCTTAGCTTTCTTACCC+CGG - chr1_3:28687001-28687020 None:intergenic 35.0%
TGCACAAATTATCATCCCAA+TGG + chr1_3:28687053-28687072 Msa0113020:CDS 35.0%
GCACAAATTATCATCCCAAT+GGG + chr1_3:28687054-28687073 Msa0113020:CDS 35.0%
GATAATTTGACGGTGAAACT+AGG - chr1_3:28687083-28687102 None:intergenic 35.0%
GTGATATGGCGATAATTTGA+CGG - chr1_3:28687093-28687112 None:intergenic 35.0%
TTATCGCCATATCACATTGA+AGG + chr1_3:28687098-28687117 Msa0113020:CDS 35.0%
CAGTTAGGTACAAATATTGC+TGG - chr1_3:28687159-28687178 None:intergenic 35.0%
TTTGTACCTAACTGTGTAAG+AGG + chr1_3:28687165-28687184 Msa0113020:intron 35.0%
! GTATTATCTGTTTCAGGTCA+TGG - chr1_3:28687480-28687499 None:intergenic 35.0%
GAATGAGTTATTGCAACAGA+AGG + chr1_3:28687525-28687544 Msa0113020:CDS 35.0%
!! CAAGAGCAGTTTTATAATGC+AGG + chr1_3:28687609-28687628 Msa0113020:CDS 35.0%
!! AGCAGTTTTATAATGCAGGT+TGG + chr1_3:28687613-28687632 Msa0113020:intron 35.0%
AAGGAACATGACTTGAAAGT+TGG + chr1_3:28687652-28687671 Msa0113020:CDS 35.0%
TACTATTATCCCAACCACAA+AGG + chr1_3:28687726-28687745 Msa0113020:CDS 35.0%
GAAATACCTTGAAAATGCTC+TGG - chr1_3:28687760-28687779 None:intergenic 35.0%
TGAAAGTAGAAGAAGGAACA+TGG + chr1_3:28688176-28688195 Msa0113020:CDS 35.0%
TGATCAACATCTCGATTATG+GGG + chr1_3:28688216-28688235 Msa0113020:CDS 35.0%
AGAGAATGCAATGTGAAGAT+TGG + chr1_3:28688267-28688286 Msa0113020:intron 35.0%
TGTGCAAAATCATGTGTTCA+AGG + chr1_3:28688317-28688336 Msa0113020:intron 35.0%
CAAACGTTCTTCTAAACATC+TGG - chr1_3:28688354-28688373 None:intergenic 35.0%
AGCACTCATATTCTATACAG+TGG - chr1_3:28688661-28688680 None:intergenic 35.0%
CGGGAAGAAAATAAACTGAA+TGG - chr1_3:28688788-28688807 None:intergenic 35.0%
! CGTGAAATTTGGACAGTTTT+AGG - chr1_3:28688824-28688843 None:intergenic 35.0%
CCGACTTTGATGTAAAAGTT+TGG - chr1_3:28688886-28688905 None:intergenic 35.0%
AATACTCGACCAAGTTTGAA+GGG + chr1_3:28689041-28689060 Msa0113020:CDS 35.0%
TGTATCTGCAGATGATTCCA+AGG + chr1_3:28681561-28681580 Msa0113020:CDS 40.0%
! GTTACCTGAGACATTTTGCT+TGG - chr1_3:28681943-28681962 None:intergenic 40.0%
TTCCATCATAACCTTGTGAG+GGG - chr1_3:28682071-28682090 None:intergenic 40.0%
CTTCCATCATAACCTTGTGA+GGG - chr1_3:28682072-28682091 None:intergenic 40.0%
! GGGAAGAGAAAACTTTTTGC+TGG + chr1_3:28682117-28682136 Msa0113020:CDS 40.0%
TTTGTGGAGTTGAAAGTTGG+TGG + chr1_3:28683102-28683121 Msa0113020:CDS 40.0%
CTGCATAAAATCTACTGCCT+TGG - chr1_3:28683161-28683180 None:intergenic 40.0%
! CAAGGCAGTAGATTTTATGC+AGG + chr1_3:28683159-28683178 Msa0113020:CDS 40.0%
! GCAGTAGATTTTATGCAGGT+TGG + chr1_3:28683163-28683182 Msa0113020:CDS 40.0%
! ACATACAAAAGCACGTTTGC+AGG - chr1_3:28683389-28683408 None:intergenic 40.0%
TTAACGCTCTTGTACCAAAC+GGG + chr1_3:28683531-28683550 Msa0113020:intron 40.0%
ATCTTGTCCTGTTTCCCAAA+CGG - chr1_3:28683583-28683602 None:intergenic 40.0%
AAGCAAGACTCAAGTTATGC+CGG + chr1_3:28683845-28683864 Msa0113020:intron 40.0%
TTCATGACACGATCCTAAAC+CGG - chr1_3:28683896-28683915 None:intergenic 40.0%
GAGATACGTTAAACGCATCA+AGG - chr1_3:28683933-28683952 None:intergenic 40.0%
TTTAACGTATCTCGGTAACG+CGG + chr1_3:28683940-28683959 Msa0113020:intron 40.0%
CGCCATGACACGTAATATAT+AGG + chr1_3:28683980-28683999 Msa0113020:intron 40.0%
GTGACTACAATACAACCTGA+CGG - chr1_3:28684086-28684105 None:intergenic 40.0%
ATCCCTTTCCTTCTTTGTTC+AGG + chr1_3:28684178-28684197 Msa0113020:intron 40.0%
GAACCTGAACAAAGAAGGAA+AGG - chr1_3:28684184-28684203 None:intergenic 40.0%
TTTCTCCTTACCTTTGACAC+GGG - chr1_3:28684215-28684234 None:intergenic 40.0%
CAAGCTATGAGACATAAAGC+TGG - chr1_3:28684266-28684285 None:intergenic 40.0%
CCGTTACAATTATACTTGGC+TGG + chr1_3:28684492-28684511 Msa0113020:intron 40.0%
GTCAGAAAAAATAGCTTGGG+TGG - chr1_3:28684780-28684799 None:intergenic 40.0%
TAGGTTAGATGTCGATGTTG+AGG - chr1_3:28684829-28684848 None:intergenic 40.0%
AAACAGTCCACTTGAAGAGT+TGG - chr1_3:28685905-28685924 None:intergenic 40.0%
!! CTCTTCAAGTGGACTGTTTA+AGG + chr1_3:28685906-28685925 Msa0113020:intron 40.0%
! CATCATGAAAACAGTGTTGG+GGG - chr1_3:28685958-28685977 None:intergenic 40.0%
CCATCATGAAAACAGTGTTG+GGG - chr1_3:28685959-28685978 None:intergenic 40.0%
TCATGTATTAGTGCTATGCC+TGG + chr1_3:28686111-28686130 Msa0113020:intron 40.0%
! CACATTTTTGAACCAAAGCC+AGG - chr1_3:28686132-28686151 None:intergenic 40.0%
!! CTGGCTTTGGTTCAAAAATG+TGG + chr1_3:28686130-28686149 Msa0113020:intron 40.0%
TGTCTCTCTACGAATTTCCT+TGG - chr1_3:28686321-28686340 None:intergenic 40.0%
GGAAATTCGTAGAGAGACAT+TGG + chr1_3:28686322-28686341 Msa0113020:CDS 40.0%
TTTGGAAGTCTAAGCGATGT+TGG - chr1_3:28686363-28686382 None:intergenic 40.0%
ACATCGCTTAGACTTCCAAA+TGG + chr1_3:28686363-28686382 Msa0113020:CDS 40.0%
CATCGCTTAGACTTCCAAAT+GGG + chr1_3:28686364-28686383 Msa0113020:CDS 40.0%
! AGGATGTTTGGCTTCAGAAT+TGG + chr1_3:28686421-28686440 Msa0113020:CDS 40.0%
! TTTGGCTTCAGAATTGGAAG+CGG + chr1_3:28686427-28686446 Msa0113020:CDS 40.0%
AATCTGACCCTCCTTTGTAT+TGG - chr1_3:28686491-28686510 None:intergenic 40.0%
CGATGATTATGATTGCGTTG+AGG + chr1_3:28686614-28686633 Msa0113020:intron 40.0%
!!! TGCGTTGAGGTTTTGAATGA+CGG + chr1_3:28686627-28686646 Msa0113020:intron 40.0%
TTGTCAATGTTTGTCCCTTG+AGG - chr1_3:28686726-28686745 None:intergenic 40.0%
TGAAAGCCTCTTACACAGTT+AGG - chr1_3:28687174-28687193 None:intergenic 40.0%
! AAGGCCACAATTAGAAGTGT+TGG + chr1_3:28687544-28687563 Msa0113020:CDS 40.0%
CTCACCAACACTTCTAATTG+TGG - chr1_3:28687551-28687570 None:intergenic 40.0%
!! CACAATTAGAAGTGTTGGTG+AGG + chr1_3:28687549-28687568 Msa0113020:CDS 40.0%
TACCAAGCGAGCTGTTAAAA+AGG + chr1_3:28688122-28688141 Msa0113020:CDS 40.0%
GTGGAGTTGAAAGTAGAAGA+AGG + chr1_3:28688169-28688188 Msa0113020:CDS 40.0%
AGAAGAAGGAACATGGTTTG+TGG + chr1_3:28688183-28688202 Msa0113020:CDS 40.0%
GATCAACATCTCGATTATGG+GGG + chr1_3:28688217-28688236 Msa0113020:CDS 40.0%
!! TAGAACTTCTACTCTGAGAC+AGG + chr1_3:28688447-28688466 Msa0113020:intron 40.0%
GGTTTATGAGCTCATCAAGA+GGG - chr1_3:28688749-28688768 None:intergenic 40.0%
! AATGGTGGAGATGTATGCAT+GGG - chr1_3:28688770-28688789 None:intergenic 40.0%
GTATGCACTGTTTCGATTCA+TGG - chr1_3:28689003-28689022 None:intergenic 40.0%
GAATACTCGACCAAGTTTGA+AGG + chr1_3:28689040-28689059 Msa0113020:CDS 40.0%
AGACGTTCTGTTATGAACAC+TGG + chr1_3:28689109-28689128 Msa0113020:CDS 40.0%
GTTCTGTTATGAACACTGGT+TGG + chr1_3:28689113-28689132 Msa0113020:CDS 40.0%
TGTATCTGCAGATGATTCCA+AGG + chr1_3:28681561-28681580 Msa0113020:CDS 40.0%
! GTTACCTGAGACATTTTGCT+TGG - chr1_3:28681943-28681962 None:intergenic 40.0%
TTCCATCATAACCTTGTGAG+GGG - chr1_3:28682071-28682090 None:intergenic 40.0%
CTTCCATCATAACCTTGTGA+GGG - chr1_3:28682072-28682091 None:intergenic 40.0%
! GGGAAGAGAAAACTTTTTGC+TGG + chr1_3:28682117-28682136 Msa0113020:CDS 40.0%
TTTGTGGAGTTGAAAGTTGG+TGG + chr1_3:28683102-28683121 Msa0113020:CDS 40.0%
CTGCATAAAATCTACTGCCT+TGG - chr1_3:28683161-28683180 None:intergenic 40.0%
! CAAGGCAGTAGATTTTATGC+AGG + chr1_3:28683159-28683178 Msa0113020:CDS 40.0%
! GCAGTAGATTTTATGCAGGT+TGG + chr1_3:28683163-28683182 Msa0113020:CDS 40.0%
! ACATACAAAAGCACGTTTGC+AGG - chr1_3:28683389-28683408 None:intergenic 40.0%
TTAACGCTCTTGTACCAAAC+GGG + chr1_3:28683531-28683550 Msa0113020:intron 40.0%
ATCTTGTCCTGTTTCCCAAA+CGG - chr1_3:28683583-28683602 None:intergenic 40.0%
AAGCAAGACTCAAGTTATGC+CGG + chr1_3:28683845-28683864 Msa0113020:intron 40.0%
TTCATGACACGATCCTAAAC+CGG - chr1_3:28683896-28683915 None:intergenic 40.0%
GAGATACGTTAAACGCATCA+AGG - chr1_3:28683933-28683952 None:intergenic 40.0%
TTTAACGTATCTCGGTAACG+CGG + chr1_3:28683940-28683959 Msa0113020:intron 40.0%
CGCCATGACACGTAATATAT+AGG + chr1_3:28683980-28683999 Msa0113020:intron 40.0%
GTGACTACAATACAACCTGA+CGG - chr1_3:28684086-28684105 None:intergenic 40.0%
ATCCCTTTCCTTCTTTGTTC+AGG + chr1_3:28684178-28684197 Msa0113020:intron 40.0%
GAACCTGAACAAAGAAGGAA+AGG - chr1_3:28684184-28684203 None:intergenic 40.0%
TTTCTCCTTACCTTTGACAC+GGG - chr1_3:28684215-28684234 None:intergenic 40.0%
CAAGCTATGAGACATAAAGC+TGG - chr1_3:28684266-28684285 None:intergenic 40.0%
CCGTTACAATTATACTTGGC+TGG + chr1_3:28684492-28684511 Msa0113020:intron 40.0%
GTCAGAAAAAATAGCTTGGG+TGG - chr1_3:28684780-28684799 None:intergenic 40.0%
TAGGTTAGATGTCGATGTTG+AGG - chr1_3:28684829-28684848 None:intergenic 40.0%
AAACAGTCCACTTGAAGAGT+TGG - chr1_3:28685905-28685924 None:intergenic 40.0%
!! CTCTTCAAGTGGACTGTTTA+AGG + chr1_3:28685906-28685925 Msa0113020:intron 40.0%
! CATCATGAAAACAGTGTTGG+GGG - chr1_3:28685958-28685977 None:intergenic 40.0%
CCATCATGAAAACAGTGTTG+GGG - chr1_3:28685959-28685978 None:intergenic 40.0%
TCATGTATTAGTGCTATGCC+TGG + chr1_3:28686111-28686130 Msa0113020:intron 40.0%
! CACATTTTTGAACCAAAGCC+AGG - chr1_3:28686132-28686151 None:intergenic 40.0%
!! CTGGCTTTGGTTCAAAAATG+TGG + chr1_3:28686130-28686149 Msa0113020:intron 40.0%
TGTCTCTCTACGAATTTCCT+TGG - chr1_3:28686321-28686340 None:intergenic 40.0%
GGAAATTCGTAGAGAGACAT+TGG + chr1_3:28686322-28686341 Msa0113020:CDS 40.0%
TTTGGAAGTCTAAGCGATGT+TGG - chr1_3:28686363-28686382 None:intergenic 40.0%
ACATCGCTTAGACTTCCAAA+TGG + chr1_3:28686363-28686382 Msa0113020:CDS 40.0%
CATCGCTTAGACTTCCAAAT+GGG + chr1_3:28686364-28686383 Msa0113020:CDS 40.0%
! AGGATGTTTGGCTTCAGAAT+TGG + chr1_3:28686421-28686440 Msa0113020:CDS 40.0%
! TTTGGCTTCAGAATTGGAAG+CGG + chr1_3:28686427-28686446 Msa0113020:CDS 40.0%
AATCTGACCCTCCTTTGTAT+TGG - chr1_3:28686491-28686510 None:intergenic 40.0%
CGATGATTATGATTGCGTTG+AGG + chr1_3:28686614-28686633 Msa0113020:intron 40.0%
!!! TGCGTTGAGGTTTTGAATGA+CGG + chr1_3:28686627-28686646 Msa0113020:intron 40.0%
TTGTCAATGTTTGTCCCTTG+AGG - chr1_3:28686726-28686745 None:intergenic 40.0%
TGAAAGCCTCTTACACAGTT+AGG - chr1_3:28687174-28687193 None:intergenic 40.0%
! AAGGCCACAATTAGAAGTGT+TGG + chr1_3:28687544-28687563 Msa0113020:CDS 40.0%
CTCACCAACACTTCTAATTG+TGG - chr1_3:28687551-28687570 None:intergenic 40.0%
!! CACAATTAGAAGTGTTGGTG+AGG + chr1_3:28687549-28687568 Msa0113020:CDS 40.0%
TACCAAGCGAGCTGTTAAAA+AGG + chr1_3:28688122-28688141 Msa0113020:CDS 40.0%
GTGGAGTTGAAAGTAGAAGA+AGG + chr1_3:28688169-28688188 Msa0113020:CDS 40.0%
AGAAGAAGGAACATGGTTTG+TGG + chr1_3:28688183-28688202 Msa0113020:CDS 40.0%
GATCAACATCTCGATTATGG+GGG + chr1_3:28688217-28688236 Msa0113020:CDS 40.0%
!! TAGAACTTCTACTCTGAGAC+AGG + chr1_3:28688447-28688466 Msa0113020:intron 40.0%
GGTTTATGAGCTCATCAAGA+GGG - chr1_3:28688749-28688768 None:intergenic 40.0%
! AATGGTGGAGATGTATGCAT+GGG - chr1_3:28688770-28688789 None:intergenic 40.0%
GTATGCACTGTTTCGATTCA+TGG - chr1_3:28689003-28689022 None:intergenic 40.0%
GAATACTCGACCAAGTTTGA+AGG + chr1_3:28689040-28689059 Msa0113020:CDS 40.0%
AGACGTTCTGTTATGAACAC+TGG + chr1_3:28689109-28689128 Msa0113020:CDS 40.0%
GTTCTGTTATGAACACTGGT+TGG + chr1_3:28689113-28689132 Msa0113020:CDS 40.0%
AATCGGACCCTCCTTTGTAT+TGG - chr1_3:28681725-28681744 None:intergenic 45.0%
ACTAATTCTGCCACACCTCA+TGG + chr1_3:28681894-28681913 Msa0113020:CDS 45.0%
CTAATTCTGCCACACCTCAT+GGG + chr1_3:28681895-28681914 Msa0113020:CDS 45.0%
! AACTTTTGTCCCATGAGGTG+TGG - chr1_3:28681907-28681926 None:intergenic 45.0%
GCAACCAAGCAAAATGTCTC+AGG + chr1_3:28681936-28681955 Msa0113020:CDS 45.0%
TCCATCATAACCTTGTGAGG+GGG - chr1_3:28682070-28682089 None:intergenic 45.0%
CCTTCCATCATAACCTTGTG+AGG - chr1_3:28682073-28682092 None:intergenic 45.0%
! CCTCACAAGGTTATGATGGA+AGG + chr1_3:28682070-28682089 Msa0113020:intron 45.0%
GTGAATTCATCATAGCCGGT+AGG + chr1_3:28682734-28682753 Msa0113020:intron 45.0%
!! TGAAAGTTGGTGGAAAGTCG+TGG + chr1_3:28683112-28683131 Msa0113020:CDS 45.0%
! TGCAGGTTGGAGAAAGTTTC+AGG + chr1_3:28683176-28683195 Msa0113020:CDS 45.0%
! AAATCACGGCAAGAGTGCAT+CGG + chr1_3:28683359-28683378 Msa0113020:intron 45.0%
TAACGCTCTTGTACCAAACG+GGG + chr1_3:28683532-28683551 Msa0113020:intron 45.0%
TCTTGTCCTGTTTCCCAAAC+GGG - chr1_3:28683582-28683601 None:intergenic 45.0%
AACAGGACAAGATTCGCAAG+AGG + chr1_3:28683590-28683609 Msa0113020:intron 45.0%
ACAGGACAAGATTCGCAAGA+GGG + chr1_3:28683591-28683610 Msa0113020:intron 45.0%
! ATTTTACGGAAAGTCTCGGG+TGG - chr1_3:28683697-28683716 None:intergenic 45.0%
AGTTATGCCGGCAATGATCT+AGG + chr1_3:28683857-28683876 Msa0113020:intron 45.0%
TTTAGCATGCACTTCCGTCT+AGG + chr1_3:28684039-28684058 Msa0113020:intron 45.0%
TGTGGTCATGCTTACCTAGA+CGG - chr1_3:28684056-28684075 None:intergenic 45.0%
CAGGTTGTATTGTAGTCACG+TGG + chr1_3:28684087-28684106 Msa0113020:intron 45.0%
TCTACCTAACCCTAGGTTGT+CGG - chr1_3:28684136-28684155 None:intergenic 45.0%
AGTGAGTTCTACCTAACCCT+AGG - chr1_3:28684143-28684162 None:intergenic 45.0%
CCTGTGAACCTGAACAAAGA+AGG - chr1_3:28684189-28684208 None:intergenic 45.0%
! CCTTCTTTGTTCAGGTTCAC+AGG + chr1_3:28684186-28684205 Msa0113020:intron 45.0%
! ACGGATTGATCGTGCTATCT+TGG + chr1_3:28684238-28684257 Msa0113020:intron 45.0%
! TATACTTGGCTGGTTAGCAG+AGG + chr1_3:28684502-28684521 Msa0113020:intron 45.0%
GTCTGAACTCTGATTCACAG+TGG - chr1_3:28684807-28684826 None:intergenic 45.0%
TCGAGTGTATACTATGGACG+TGG + chr1_3:28685270-28685289 Msa0113020:intron 45.0%
CGAGTGTATACTATGGACGT+GGG + chr1_3:28685271-28685290 Msa0113020:intron 45.0%
TCTTAGGTATTTGGATGGGG+AGG + chr1_3:28685676-28685695 Msa0113020:intron 45.0%
CTCCTGAGTGATTCGTCATT+TGG + chr1_3:28685853-28685872 Msa0113020:intron 45.0%
CTGAGTGATTCGTCATTTGG+CGG + chr1_3:28685856-28685875 Msa0113020:intron 45.0%
GGTCATACCAACTCTTCAAG+TGG + chr1_3:28685895-28685914 Msa0113020:intron 45.0%
! CCCCAACACTGTTTTCATGA+TGG + chr1_3:28685956-28685975 Msa0113020:intron 45.0%
ATTAGTGCTATGCCTGGCTT+TGG + chr1_3:28686117-28686136 Msa0113020:intron 45.0%
TGTGCTTGCAGATGATTCCA+AGG + chr1_3:28686301-28686320 Msa0113020:intron 45.0%
! CTTTTTCTTGAGGGGTTGTC+TGG - chr1_3:28686661-28686680 None:intergenic 45.0%
GCATCCTCGCAAAAAGTTTC+AGG + chr1_3:28686765-28686784 Msa0113020:intron 45.0%
! CTTGCCTGAAACTTTTTGCG+AGG - chr1_3:28686772-28686791 None:intergenic 45.0%
GCAGAGGCTAAAAGAAACTG+TGG + chr1_3:28686972-28686991 Msa0113020:intron 45.0%
GAGGCTAAAAGAAACTGTGG+AGG + chr1_3:28686975-28686994 Msa0113020:intron 45.0%
CTAAAAGAAACTGTGGAGGC+CGG + chr1_3:28686979-28686998 Msa0113020:CDS 45.0%
TAAAAGAAACTGTGGAGGCC+GGG + chr1_3:28686980-28686999 Msa0113020:CDS 45.0%
GTGAAACTAGGACTCCCATT+GGG - chr1_3:28687071-28687090 None:intergenic 45.0%
!! TTAGAAGTGTTGGTGAGGAC+AGG + chr1_3:28687554-28687573 Msa0113020:CDS 45.0%
!! TAGAAGTGTTGGTGAGGACA+GGG + chr1_3:28687555-28687574 Msa0113020:CDS 45.0%
! TGCCTTTTTAACAGCTCGCT+TGG - chr1_3:28688127-28688146 None:intergenic 45.0%
! AGAAGGAACATGGTTTGTGG+AGG + chr1_3:28688186-28688205 Msa0113020:CDS 45.0%
CGATTATGGGGGTTCACTAA+AGG + chr1_3:28688228-28688247 Msa0113020:CDS 45.0%
TATGGGGGTTCACTAAAGGT+TGG + chr1_3:28688232-28688251 Msa0113020:intron 45.0%
GGGTTTATGAGCTCATCAAG+AGG - chr1_3:28688750-28688769 None:intergenic 45.0%
! GAATGGTGGAGATGTATGCA+TGG - chr1_3:28688771-28688790 None:intergenic 45.0%
!! GTTTATTTTCTTCCCGGACC+AGG + chr1_3:28688792-28688811 Msa0113020:intron 45.0%
!!! TTTTAGGTTGGAACCTGGTC+CGG - chr1_3:28688808-28688827 None:intergenic 45.0%
!!! GACAGTTTTAGGTTGGAACC+TGG - chr1_3:28688813-28688832 None:intergenic 45.0%
TGGCAAGGATAGAACTTGGA+AGG + chr1_3:28689081-28689100 Msa0113020:CDS 45.0%
AATCGGACCCTCCTTTGTAT+TGG - chr1_3:28681725-28681744 None:intergenic 45.0%
ACTAATTCTGCCACACCTCA+TGG + chr1_3:28681894-28681913 Msa0113020:CDS 45.0%
CTAATTCTGCCACACCTCAT+GGG + chr1_3:28681895-28681914 Msa0113020:CDS 45.0%
! AACTTTTGTCCCATGAGGTG+TGG - chr1_3:28681907-28681926 None:intergenic 45.0%
GCAACCAAGCAAAATGTCTC+AGG + chr1_3:28681936-28681955 Msa0113020:CDS 45.0%
TCCATCATAACCTTGTGAGG+GGG - chr1_3:28682070-28682089 None:intergenic 45.0%
CCTTCCATCATAACCTTGTG+AGG - chr1_3:28682073-28682092 None:intergenic 45.0%
! CCTCACAAGGTTATGATGGA+AGG + chr1_3:28682070-28682089 Msa0113020:intron 45.0%
GTGAATTCATCATAGCCGGT+AGG + chr1_3:28682734-28682753 Msa0113020:intron 45.0%
!! TGAAAGTTGGTGGAAAGTCG+TGG + chr1_3:28683112-28683131 Msa0113020:CDS 45.0%
! TGCAGGTTGGAGAAAGTTTC+AGG + chr1_3:28683176-28683195 Msa0113020:CDS 45.0%
! AAATCACGGCAAGAGTGCAT+CGG + chr1_3:28683359-28683378 Msa0113020:intron 45.0%
TAACGCTCTTGTACCAAACG+GGG + chr1_3:28683532-28683551 Msa0113020:intron 45.0%
TCTTGTCCTGTTTCCCAAAC+GGG - chr1_3:28683582-28683601 None:intergenic 45.0%
AACAGGACAAGATTCGCAAG+AGG + chr1_3:28683590-28683609 Msa0113020:intron 45.0%
ACAGGACAAGATTCGCAAGA+GGG + chr1_3:28683591-28683610 Msa0113020:intron 45.0%
! ATTTTACGGAAAGTCTCGGG+TGG - chr1_3:28683697-28683716 None:intergenic 45.0%
AGTTATGCCGGCAATGATCT+AGG + chr1_3:28683857-28683876 Msa0113020:intron 45.0%
TTTAGCATGCACTTCCGTCT+AGG + chr1_3:28684039-28684058 Msa0113020:intron 45.0%
TGTGGTCATGCTTACCTAGA+CGG - chr1_3:28684056-28684075 None:intergenic 45.0%
CAGGTTGTATTGTAGTCACG+TGG + chr1_3:28684087-28684106 Msa0113020:intron 45.0%
TCTACCTAACCCTAGGTTGT+CGG - chr1_3:28684136-28684155 None:intergenic 45.0%
AGTGAGTTCTACCTAACCCT+AGG - chr1_3:28684143-28684162 None:intergenic 45.0%
CCTGTGAACCTGAACAAAGA+AGG - chr1_3:28684189-28684208 None:intergenic 45.0%
! CCTTCTTTGTTCAGGTTCAC+AGG + chr1_3:28684186-28684205 Msa0113020:intron 45.0%
! ACGGATTGATCGTGCTATCT+TGG + chr1_3:28684238-28684257 Msa0113020:intron 45.0%
! TATACTTGGCTGGTTAGCAG+AGG + chr1_3:28684502-28684521 Msa0113020:intron 45.0%
GTCTGAACTCTGATTCACAG+TGG - chr1_3:28684807-28684826 None:intergenic 45.0%
TCGAGTGTATACTATGGACG+TGG + chr1_3:28685270-28685289 Msa0113020:intron 45.0%
CGAGTGTATACTATGGACGT+GGG + chr1_3:28685271-28685290 Msa0113020:intron 45.0%
TCTTAGGTATTTGGATGGGG+AGG + chr1_3:28685676-28685695 Msa0113020:intron 45.0%
CTCCTGAGTGATTCGTCATT+TGG + chr1_3:28685853-28685872 Msa0113020:intron 45.0%
CTGAGTGATTCGTCATTTGG+CGG + chr1_3:28685856-28685875 Msa0113020:intron 45.0%
GGTCATACCAACTCTTCAAG+TGG + chr1_3:28685895-28685914 Msa0113020:intron 45.0%
! CCCCAACACTGTTTTCATGA+TGG + chr1_3:28685956-28685975 Msa0113020:intron 45.0%
ATTAGTGCTATGCCTGGCTT+TGG + chr1_3:28686117-28686136 Msa0113020:intron 45.0%
TGTGCTTGCAGATGATTCCA+AGG + chr1_3:28686301-28686320 Msa0113020:intron 45.0%
! CTTTTTCTTGAGGGGTTGTC+TGG - chr1_3:28686661-28686680 None:intergenic 45.0%
GCATCCTCGCAAAAAGTTTC+AGG + chr1_3:28686765-28686784 Msa0113020:intron 45.0%
! CTTGCCTGAAACTTTTTGCG+AGG - chr1_3:28686772-28686791 None:intergenic 45.0%
GCAGAGGCTAAAAGAAACTG+TGG + chr1_3:28686972-28686991 Msa0113020:intron 45.0%
GAGGCTAAAAGAAACTGTGG+AGG + chr1_3:28686975-28686994 Msa0113020:intron 45.0%
CTAAAAGAAACTGTGGAGGC+CGG + chr1_3:28686979-28686998 Msa0113020:CDS 45.0%
TAAAAGAAACTGTGGAGGCC+GGG + chr1_3:28686980-28686999 Msa0113020:CDS 45.0%
GTGAAACTAGGACTCCCATT+GGG - chr1_3:28687071-28687090 None:intergenic 45.0%
!! TTAGAAGTGTTGGTGAGGAC+AGG + chr1_3:28687554-28687573 Msa0113020:CDS 45.0%
!! TAGAAGTGTTGGTGAGGACA+GGG + chr1_3:28687555-28687574 Msa0113020:CDS 45.0%
! TGCCTTTTTAACAGCTCGCT+TGG - chr1_3:28688127-28688146 None:intergenic 45.0%
! AGAAGGAACATGGTTTGTGG+AGG + chr1_3:28688186-28688205 Msa0113020:CDS 45.0%
CGATTATGGGGGTTCACTAA+AGG + chr1_3:28688228-28688247 Msa0113020:CDS 45.0%
TATGGGGGTTCACTAAAGGT+TGG + chr1_3:28688232-28688251 Msa0113020:intron 45.0%
GGGTTTATGAGCTCATCAAG+AGG - chr1_3:28688750-28688769 None:intergenic 45.0%
! GAATGGTGGAGATGTATGCA+TGG - chr1_3:28688771-28688790 None:intergenic 45.0%
!! GTTTATTTTCTTCCCGGACC+AGG + chr1_3:28688792-28688811 Msa0113020:intron 45.0%
!!! TTTTAGGTTGGAACCTGGTC+CGG - chr1_3:28688808-28688827 None:intergenic 45.0%
!!! GACAGTTTTAGGTTGGAACC+TGG - chr1_3:28688813-28688832 None:intergenic 45.0%
TGGCAAGGATAGAACTTGGA+AGG + chr1_3:28689081-28689100 Msa0113020:CDS 45.0%
!!! TATTTTATAAAATAAAAATG+AGG - chr1_3:28682586-28682605 None:intergenic 5.0%
!! TTTGAAAAAATAAATTAATT+GGG - chr1_3:28684621-28684640 None:intergenic 5.0%
!!! TTTTGAAAAAATAAATTAAT+TGG - chr1_3:28684622-28684641 None:intergenic 5.0%
!!! TATTTTATAAAATAAAAATG+AGG - chr1_3:28682586-28682605 None:intergenic 5.0%
!! TTTGAAAAAATAAATTAATT+GGG - chr1_3:28684621-28684640 None:intergenic 5.0%
!!! TTTTGAAAAAATAAATTAAT+TGG - chr1_3:28684622-28684641 None:intergenic 5.0%
TTCCTTAGAACCCCCTCACA+AGG + chr1_3:28682057-28682076 Msa0113020:intron 50.0%
AACCTTGTGAGGGGGTTCTA+AGG - chr1_3:28682062-28682081 None:intergenic 50.0%
ACCCCCTCACAAGGTTATGA+TGG + chr1_3:28682066-28682085 Msa0113020:intron 50.0%
GAGTACCTGATAGAGCATGG+CGG - chr1_3:28682155-28682174 None:intergenic 50.0%
!! GAGGAGTACCTGATAGAGCA+TGG - chr1_3:28682158-28682177 None:intergenic 50.0%
! AATCACGGCAAGAGTGCATC+GGG + chr1_3:28683360-28683379 Msa0113020:intron 50.0%
CTCTTGTACCAAACGGGGTT+AGG + chr1_3:28683537-28683556 Msa0113020:intron 50.0%
TGTACCAAACGGGGTTAGGT+TGG + chr1_3:28683541-28683560 Msa0113020:intron 50.0%
GTACCAAACGGGGTTAGGTT+GGG + chr1_3:28683542-28683561 Msa0113020:intron 50.0%
!! GGGTTAGGTTGGGATCTCAA+GGG + chr1_3:28683552-28683571 Msa0113020:intron 50.0%
!! GGTTAGGTTGGGATCTCAAG+GGG + chr1_3:28683553-28683572 Msa0113020:intron 50.0%
ATCTCAAGGGGTTTCCCGTT+TGG + chr1_3:28683565-28683584 Msa0113020:intron 50.0%
TCTCAAGGGGTTTCCCGTTT+GGG + chr1_3:28683566-28683585 Msa0113020:intron 50.0%
CAGGACAAGATTCGCAAGAG+GGG + chr1_3:28683592-28683611 Msa0113020:intron 50.0%
ACGATCCTAAACCGGACGAT+CGG - chr1_3:28683888-28683907 None:intergenic 50.0%
TTACGTGTCATGGCGGTCAA+GGG - chr1_3:28683975-28683994 None:intergenic 50.0%
ATTACGTGTCATGGCGGTCA+AGG - chr1_3:28683976-28683995 None:intergenic 50.0%
GTGCATGCTAAAGCCGTCAT+AGG - chr1_3:28684031-28684050 None:intergenic 50.0%
CGGTAACCTCGGGAAACATA+CGG - chr1_3:28684116-28684135 None:intergenic 50.0%
GTTACCGACAACCTAGGGTT+AGG + chr1_3:28684129-28684148 Msa0113020:intron 50.0%
GGGTTAGGTAGAACTCACTG+AGG + chr1_3:28684144-28684163 Msa0113020:intron 50.0%
TCACAGGTTTCCCGTGTCAA+AGG + chr1_3:28684202-28684221 Msa0113020:intron 50.0%
GGTTTCCCGTGTCAAAGGTA+AGG + chr1_3:28684207-28684226 Msa0113020:intron 50.0%
TGGACGTGGGAGTGAATCTA+AGG + chr1_3:28685284-28685303 Msa0113020:intron 50.0%
GGACGTGGGAGTGAATCTAA+GGG + chr1_3:28685285-28685304 Msa0113020:intron 50.0%
CGCCAAATGACGAATCACTC+AGG - chr1_3:28685858-28685877 None:intergenic 50.0%
TACAACGCGGTGAGGATGTT+TGG + chr1_3:28686409-28686428 Msa0113020:CDS 50.0%
TTTGCGCTCTCTCTCAGATG+TGG + chr1_3:28686450-28686469 Msa0113020:CDS 50.0%
AAAAGAAACTGTGGAGGCCG+GGG + chr1_3:28686981-28687000 Msa0113020:CDS 50.0%
GGTGAAACTAGGACTCCCAT+TGG - chr1_3:28687072-28687091 None:intergenic 50.0%
GGCATGGTTCCTTTGTGGTT+GGG - chr1_3:28687738-28687757 None:intergenic 50.0%
! CCTTGAAAATGCTCTGGGCA+TGG - chr1_3:28687754-28687773 None:intergenic 50.0%
!! CCATGCCCAGAGCATTTTCA+AGG + chr1_3:28687751-28687770 Msa0113020:CDS 50.0%
!! TTTAGGTTGGAACCTGGTCC+GGG - chr1_3:28688807-28688826 None:intergenic 50.0%
TTGAAGGGACCGCAAGGATA+AGG + chr1_3:28689056-28689075 Msa0113020:CDS 50.0%
TGAAGGGACCGCAAGGATAA+GGG + chr1_3:28689057-28689076 Msa0113020:CDS 50.0%
CTTGCCAACCCTTATCCTTG+CGG - chr1_3:28689068-28689087 None:intergenic 50.0%
! GGGTTGGCAAGGATAGAACT+TGG + chr1_3:28689077-28689096 Msa0113020:CDS 50.0%
TTCCTTAGAACCCCCTCACA+AGG + chr1_3:28682057-28682076 Msa0113020:intron 50.0%
AACCTTGTGAGGGGGTTCTA+AGG - chr1_3:28682062-28682081 None:intergenic 50.0%
ACCCCCTCACAAGGTTATGA+TGG + chr1_3:28682066-28682085 Msa0113020:intron 50.0%
GAGTACCTGATAGAGCATGG+CGG - chr1_3:28682155-28682174 None:intergenic 50.0%
!! GAGGAGTACCTGATAGAGCA+TGG - chr1_3:28682158-28682177 None:intergenic 50.0%
! AATCACGGCAAGAGTGCATC+GGG + chr1_3:28683360-28683379 Msa0113020:intron 50.0%
CTCTTGTACCAAACGGGGTT+AGG + chr1_3:28683537-28683556 Msa0113020:intron 50.0%
TGTACCAAACGGGGTTAGGT+TGG + chr1_3:28683541-28683560 Msa0113020:intron 50.0%
GTACCAAACGGGGTTAGGTT+GGG + chr1_3:28683542-28683561 Msa0113020:intron 50.0%
!! GGGTTAGGTTGGGATCTCAA+GGG + chr1_3:28683552-28683571 Msa0113020:intron 50.0%
!! GGTTAGGTTGGGATCTCAAG+GGG + chr1_3:28683553-28683572 Msa0113020:intron 50.0%
ATCTCAAGGGGTTTCCCGTT+TGG + chr1_3:28683565-28683584 Msa0113020:intron 50.0%
TCTCAAGGGGTTTCCCGTTT+GGG + chr1_3:28683566-28683585 Msa0113020:intron 50.0%
CAGGACAAGATTCGCAAGAG+GGG + chr1_3:28683592-28683611 Msa0113020:intron 50.0%
ACGATCCTAAACCGGACGAT+CGG - chr1_3:28683888-28683907 None:intergenic 50.0%
TTACGTGTCATGGCGGTCAA+GGG - chr1_3:28683975-28683994 None:intergenic 50.0%
ATTACGTGTCATGGCGGTCA+AGG - chr1_3:28683976-28683995 None:intergenic 50.0%
GTGCATGCTAAAGCCGTCAT+AGG - chr1_3:28684031-28684050 None:intergenic 50.0%
CGGTAACCTCGGGAAACATA+CGG - chr1_3:28684116-28684135 None:intergenic 50.0%
GTTACCGACAACCTAGGGTT+AGG + chr1_3:28684129-28684148 Msa0113020:intron 50.0%
GGGTTAGGTAGAACTCACTG+AGG + chr1_3:28684144-28684163 Msa0113020:intron 50.0%
TCACAGGTTTCCCGTGTCAA+AGG + chr1_3:28684202-28684221 Msa0113020:intron 50.0%
GGTTTCCCGTGTCAAAGGTA+AGG + chr1_3:28684207-28684226 Msa0113020:intron 50.0%
TGGACGTGGGAGTGAATCTA+AGG + chr1_3:28685284-28685303 Msa0113020:intron 50.0%
GGACGTGGGAGTGAATCTAA+GGG + chr1_3:28685285-28685304 Msa0113020:intron 50.0%
CGCCAAATGACGAATCACTC+AGG - chr1_3:28685858-28685877 None:intergenic 50.0%
TACAACGCGGTGAGGATGTT+TGG + chr1_3:28686409-28686428 Msa0113020:CDS 50.0%
TTTGCGCTCTCTCTCAGATG+TGG + chr1_3:28686450-28686469 Msa0113020:CDS 50.0%
AAAAGAAACTGTGGAGGCCG+GGG + chr1_3:28686981-28687000 Msa0113020:CDS 50.0%
GGTGAAACTAGGACTCCCAT+TGG - chr1_3:28687072-28687091 None:intergenic 50.0%
GGCATGGTTCCTTTGTGGTT+GGG - chr1_3:28687738-28687757 None:intergenic 50.0%
! CCTTGAAAATGCTCTGGGCA+TGG - chr1_3:28687754-28687773 None:intergenic 50.0%
!! CCATGCCCAGAGCATTTTCA+AGG + chr1_3:28687751-28687770 Msa0113020:CDS 50.0%
!! TTTAGGTTGGAACCTGGTCC+GGG - chr1_3:28688807-28688826 None:intergenic 50.0%
TTGAAGGGACCGCAAGGATA+AGG + chr1_3:28689056-28689075 Msa0113020:CDS 50.0%
TGAAGGGACCGCAAGGATAA+GGG + chr1_3:28689057-28689076 Msa0113020:CDS 50.0%
CTTGCCAACCCTTATCCTTG+CGG - chr1_3:28689068-28689087 None:intergenic 50.0%
! GGGTTGGCAAGGATAGAACT+TGG + chr1_3:28689077-28689096 Msa0113020:CDS 50.0%
GATCCCAACCTAACCCCGTT+TGG - chr1_3:28683548-28683567 None:intergenic 55.0%
!! GGGGTTAGGTTGGGATCTCA+AGG + chr1_3:28683551-28683570 Msa0113020:intron 55.0%
GGGTTTCCCGTTTGGGAAAC+AGG + chr1_3:28683573-28683592 Msa0113020:intron 55.0%
GGGGAGACCTAGATCATTGC+CGG - chr1_3:28683867-28683886 None:intergenic 55.0%
GATCCTAAACCGGACGATCG+GGG - chr1_3:28683886-28683905 None:intergenic 55.0%
CGATCCTAAACCGGACGATC+GGG - chr1_3:28683887-28683906 None:intergenic 55.0%
TATCTCGGTAACGCGGTCCT+AGG + chr1_3:28683947-28683966 Msa0113020:intron 55.0%
TGACCACACACGTAACCGTC+AGG + chr1_3:28684068-28684087 Msa0113020:intron 55.0%
CAACCTGACGGTTACGTGTG+TGG - chr1_3:28684074-28684093 None:intergenic 55.0%
TGGTGACCGTATGTTTCCCG+AGG + chr1_3:28684107-28684126 Msa0113020:intron 55.0%
CCTAGGTTGTCGGTAACCTC+GGG - chr1_3:28684126-28684145 None:intergenic 55.0%
CCCTAGGTTGTCGGTAACCT+CGG - chr1_3:28684127-28684146 None:intergenic 55.0%
CCGAGGTTACCGACAACCTA+GGG + chr1_3:28684124-28684143 Msa0113020:intron 55.0%
GGCGGAGCTCGTTAATCACT+TGG + chr1_3:28685874-28685893 Msa0113020:intron 55.0%
GAATTGGGTACAACGCGGTG+AGG + chr1_3:28686401-28686420 Msa0113020:CDS 55.0%
ACTGCTGCTGCTACACCTCA+AGG + chr1_3:28686708-28686727 Msa0113020:intron 55.0%
CTGCTGCTGCTACACCTCAA+GGG + chr1_3:28686709-28686728 Msa0113020:intron 55.0%
GGGCATGGTTCCTTTGTGGT+TGG - chr1_3:28687739-28687758 None:intergenic 55.0%
CTCTGGGCATGGTTCCTTTG+TGG - chr1_3:28687743-28687762 None:intergenic 55.0%
CCTTGCGGTCCCTTCAAACT+TGG - chr1_3:28689053-28689072 None:intergenic 55.0%
CCAAGTTTGAAGGGACCGCA+AGG + chr1_3:28689050-28689069 Msa0113020:CDS 55.0%
! CGCAAGGATAAGGGTTGGCA+AGG + chr1_3:28689066-28689085 Msa0113020:CDS 55.0%
GATCCCAACCTAACCCCGTT+TGG - chr1_3:28683548-28683567 None:intergenic 55.0%
!! GGGGTTAGGTTGGGATCTCA+AGG + chr1_3:28683551-28683570 Msa0113020:intron 55.0%
GGGTTTCCCGTTTGGGAAAC+AGG + chr1_3:28683573-28683592 Msa0113020:intron 55.0%
GGGGAGACCTAGATCATTGC+CGG - chr1_3:28683867-28683886 None:intergenic 55.0%
GATCCTAAACCGGACGATCG+GGG - chr1_3:28683886-28683905 None:intergenic 55.0%
CGATCCTAAACCGGACGATC+GGG - chr1_3:28683887-28683906 None:intergenic 55.0%
TATCTCGGTAACGCGGTCCT+AGG + chr1_3:28683947-28683966 Msa0113020:intron 55.0%
TGACCACACACGTAACCGTC+AGG + chr1_3:28684068-28684087 Msa0113020:intron 55.0%
CAACCTGACGGTTACGTGTG+TGG - chr1_3:28684074-28684093 None:intergenic 55.0%
TGGTGACCGTATGTTTCCCG+AGG + chr1_3:28684107-28684126 Msa0113020:intron 55.0%
CCTAGGTTGTCGGTAACCTC+GGG - chr1_3:28684126-28684145 None:intergenic 55.0%
CCCTAGGTTGTCGGTAACCT+CGG - chr1_3:28684127-28684146 None:intergenic 55.0%
CCGAGGTTACCGACAACCTA+GGG + chr1_3:28684124-28684143 Msa0113020:intron 55.0%
GGCGGAGCTCGTTAATCACT+TGG + chr1_3:28685874-28685893 Msa0113020:intron 55.0%
GAATTGGGTACAACGCGGTG+AGG + chr1_3:28686401-28686420 Msa0113020:CDS 55.0%
ACTGCTGCTGCTACACCTCA+AGG + chr1_3:28686708-28686727 Msa0113020:intron 55.0%
CTGCTGCTGCTACACCTCAA+GGG + chr1_3:28686709-28686728 Msa0113020:intron 55.0%
GGGCATGGTTCCTTTGTGGT+TGG - chr1_3:28687739-28687758 None:intergenic 55.0%
CTCTGGGCATGGTTCCTTTG+TGG - chr1_3:28687743-28687762 None:intergenic 55.0%
CCTTGCGGTCCCTTCAAACT+TGG - chr1_3:28689053-28689072 None:intergenic 55.0%
CCAAGTTTGAAGGGACCGCA+AGG + chr1_3:28689050-28689069 Msa0113020:CDS 55.0%
! CGCAAGGATAAGGGTTGGCA+AGG + chr1_3:28689066-28689085 Msa0113020:CDS 55.0%
AGCAGCCGCCATGCTCTATC+AGG + chr1_3:28682147-28682166 Msa0113020:CDS 60.0%
AGGGGCCCGCATGTTACTGA+GGG + chr1_3:28683610-28683629 Msa0113020:intron 60.0%
GGGCTCCCTCAGTAACATGC+GGG - chr1_3:28683618-28683637 None:intergenic 60.0%
CGGGCTCCCTCAGTAACATG+CGG - chr1_3:28683619-28683638 None:intergenic 60.0%
TCTAGGTCTCCCCGATCGTC+CGG + chr1_3:28683874-28683893 Msa0113020:intron 60.0%
TCTCCCCGATCGTCCGGTTT+AGG + chr1_3:28683880-28683899 Msa0113020:intron 60.0%
CATGGCGGTCAAGGGAACCT+AGG - chr1_3:28683967-28683986 None:intergenic 60.0%
CCCGAGGTTACCGACAACCT+AGG + chr1_3:28684123-28684142 Msa0113020:intron 60.0%
! GTGTTGGTGAGGACAGGGCA+TGG + chr1_3:28687560-28687579 Msa0113020:CDS 60.0%
GGGACCGCAAGGATAAGGGT+TGG + chr1_3:28689061-28689080 Msa0113020:CDS 60.0%
AGCAGCCGCCATGCTCTATC+AGG + chr1_3:28682147-28682166 Msa0113020:CDS 60.0%
AGGGGCCCGCATGTTACTGA+GGG + chr1_3:28683610-28683629 Msa0113020:intron 60.0%
GGGCTCCCTCAGTAACATGC+GGG - chr1_3:28683618-28683637 None:intergenic 60.0%
CGGGCTCCCTCAGTAACATG+CGG - chr1_3:28683619-28683638 None:intergenic 60.0%
TCTAGGTCTCCCCGATCGTC+CGG + chr1_3:28683874-28683893 Msa0113020:intron 60.0%
TCTCCCCGATCGTCCGGTTT+AGG + chr1_3:28683880-28683899 Msa0113020:intron 60.0%
CATGGCGGTCAAGGGAACCT+AGG - chr1_3:28683967-28683986 None:intergenic 60.0%
CCCGAGGTTACCGACAACCT+AGG + chr1_3:28684123-28684142 Msa0113020:intron 60.0%
! GTGTTGGTGAGGACAGGGCA+TGG + chr1_3:28687560-28687579 Msa0113020:CDS 60.0%
GGGACCGCAAGGATAAGGGT+TGG + chr1_3:28689061-28689080 Msa0113020:CDS 60.0%
GAGGGGCCCGCATGTTACTG+AGG + chr1_3:28683609-28683628 Msa0113020:intron 65.0%
GAGGGGCCCGCATGTTACTG+AGG + chr1_3:28683609-28683628 Msa0113020:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 28681560 28689240 28681560 ID=Msa0113020;Name=Msa0113020
chr1_3 mRNA 28681560 28689240 28681560 ID=Msa0113020-mRNA-1;Parent=Msa0113020;Name=Msa0113020-mRNA-1;_AED=0.18;_eAED=0.19;_QI=0|0|0|1|0.27|0.33|12|0|591
chr1_3 exon 28681560 28681677 28681560 ID=Msa0113020-mRNA-1:exon:9423;Parent=Msa0113020-mRNA-1
chr1_3 exon 28681718 28681957 28681718 ID=Msa0113020-mRNA-1:exon:9424;Parent=Msa0113020-mRNA-1
chr1_3 exon 28682079 28682168 28682079 ID=Msa0113020-mRNA-1:exon:9425;Parent=Msa0113020-mRNA-1
chr1_3 exon 28682687 28682733 28682687 ID=Msa0113020-mRNA-1:exon:9426;Parent=Msa0113020-mRNA-1
chr1_3 exon 28683054 28683260 28683054 ID=Msa0113020-mRNA-1:exon:9427;Parent=Msa0113020-mRNA-1
chr1_3 exon 28686312 28686534 28686312 ID=Msa0113020-mRNA-1:exon:9428;Parent=Msa0113020-mRNA-1
chr1_3 exon 28686976 28687133 28686976 ID=Msa0113020-mRNA-1:exon:9429;Parent=Msa0113020-mRNA-1
chr1_3 exon 28687493 28687630 28687493 ID=Msa0113020-mRNA-1:exon:9430;Parent=Msa0113020-mRNA-1
chr1_3 exon 28687643 28687772 28687643 ID=Msa0113020-mRNA-1:exon:9431;Parent=Msa0113020-mRNA-1
chr1_3 exon 28687969 28688030 28687969 ID=Msa0113020-mRNA-1:exon:9432;Parent=Msa0113020-mRNA-1
chr1_3 exon 28688112 28688249 28688112 ID=Msa0113020-mRNA-1:exon:9433;Parent=Msa0113020-mRNA-1
chr1_3 exon 28689016 28689240 28689016 ID=Msa0113020-mRNA-1:exon:9434;Parent=Msa0113020-mRNA-1
chr1_3 CDS 28681560 28681677 28681560 ID=Msa0113020-mRNA-1:cds;Parent=Msa0113020-mRNA-1
chr1_3 CDS 28681718 28681957 28681718 ID=Msa0113020-mRNA-1:cds;Parent=Msa0113020-mRNA-1
chr1_3 CDS 28682079 28682168 28682079 ID=Msa0113020-mRNA-1:cds;Parent=Msa0113020-mRNA-1
chr1_3 CDS 28682687 28682733 28682687 ID=Msa0113020-mRNA-1:cds;Parent=Msa0113020-mRNA-1
chr1_3 CDS 28683054 28683260 28683054 ID=Msa0113020-mRNA-1:cds;Parent=Msa0113020-mRNA-1
chr1_3 CDS 28686312 28686534 28686312 ID=Msa0113020-mRNA-1:cds;Parent=Msa0113020-mRNA-1
chr1_3 CDS 28686976 28687133 28686976 ID=Msa0113020-mRNA-1:cds;Parent=Msa0113020-mRNA-1
chr1_3 CDS 28687493 28687630 28687493 ID=Msa0113020-mRNA-1:cds;Parent=Msa0113020-mRNA-1
chr1_3 CDS 28687643 28687772 28687643 ID=Msa0113020-mRNA-1:cds;Parent=Msa0113020-mRNA-1
chr1_3 CDS 28687969 28688030 28687969 ID=Msa0113020-mRNA-1:cds;Parent=Msa0113020-mRNA-1
chr1_3 CDS 28688112 28688249 28688112 ID=Msa0113020-mRNA-1:cds;Parent=Msa0113020-mRNA-1
chr1_3 CDS 28689016 28689240 28689016 ID=Msa0113020-mRNA-1:cds;Parent=Msa0113020-mRNA-1
Gene Sequence

>Msa0113020

ATGTATCTGCAGATGATTCCAAGGAATTTTGTGGACAAGTATTGGAAAGGAGTGTCAAATCCAATATCTCTAAAATTTTCAAATGGATCTGAGTGCAAAATGTTTTGGATACAACTTGTTTTCCAATACAAAGGAGGGTCCGATTTTTATGTCATTATACTAGATGATGGTAAATTGGAAATAGACTATTCAAGTATGCAATACAACGATGACCATGATTCAAACAAGCATTGTAAACTTGAAGAGAGTGATGATGATGATGATGATTGTGTTGAGATTTTGAATGATATTGCTACTAATTCTGCCACACCTCATGGGACAAAAGTTAATATGAATGCAACCAAGCAAAATGTCTCAGGTTATGATGGAAGGATTTCTTCTTGTAATGATAATATTGGGAAGAGAAAACTTTTTGCTGGAACTTCTAGCAGCCGCCATGCTCTATCAGATTCAGAAGGTCCTGATGTAATGAAACATAACACGTTCGAGCTTGTTCGTGTACCAAATGAGTTCTTGAGTAAACATGAAGATTTACATGGAAAATTTGTGGAGTTGAAAGTTGGTGGAAAGTCGTGGTTTGTAAAATTGAATTATTATCTCCAAGGCAGTAGATTTTATGCAGGTTGGAGAAAGTTTCAGGAAGAATGCAAATTGAAGTTTGGAGATATTTGTTTGTTTGAATTAATTGATGAGAAAAAATGTATGATTCCAAGGAAATTCGTAGAGAGACATTGGAAAGATGTATCAAATCCAACATCGCTTAGACTTCCAAATGGGTCTGAGTTCAAAATGAATTGGGTACAACGCGGTGAGGATGTTTGGCTTCAGAATTGGAAGCGGTTTGCGCTCTCTCTCAGATGTGGAGATCTTTTAGTTTTCCAATACAAAGGAGGGTCAGATTTTCATGTTATTATATTGGATGACAAGGCTAAAAGAAACTGTGGAGGCCGGGGTAAGAAAGCTAAGAAATGCACAAAAACTAAAGATAGGAATGAGAAAAGTTGCACAAATTATCATCCCAATGGGAGTCCTAGTTTCACCGTCAAATTATCGCCATATCACATTGAAGGTTATAATAGATTGATAATACCTAGATGGTTTTCAAAAGAATACATGAATGAGTTATTGCAACAGAAGGCCACAATTAGAAGTGTTGGTGAGGACAGGGCATGGTACATGACGTTAAACTTTGATAAAAGCAAGAGCAGTTTTATAATGCAGTCATTTTCAAAGGAACATGACTTGAAAGTTGGTGATGTATGTAAATTTGAGATGACTCAACGCGAACCATTTTTATTCACAATTACTATTATCCCAACCACAAAGGAACCATGCCCAGAGCATTTTCAAGCAGATTCTGTAAGTCCGAATTTACACGACAAATTCAAGGTTTTTGTAACATCATTAGACAAGTTGGTTGTACTACCAAGCGAGCTGTTAAAAAGGCATAATATATTTAGTGGAAATTTAGTGGAGTTGAAAGTAGAAGAAGGAACATGGTTTGTGGAGGTGAATTATGATCAACATCTCGATTATGGGGGTTCACTAAAGTGCATACCAACTCTATTTTCGAAAGAATACTCGACCAAGTTTGAAGGGACCGCAAGGATAAGGGTTGGCAAGGATAGAACTTGGAAGGTAAATAGACGTTCTGTTATGAACACTGGTTGGAATTTATTTGTGAAGGAAAATAACTTGCAAGTTGTTGATGTGCGTAAGTTTGAGATTACTCATGAGATGATGTATATCGCGAGTCCGCAACAATTGTCAATTTGA
Protein sequence

>Msa0113020

MYLQMIPRNFVDKYWKGVSNPISLKFSNGSECKMFWIQLVFQYKGGSDFYVIILDDGKLEIDYSSMQYNDDHDSNKHCKLEESDDDDDDCVEILNDIATNSATPHGTKVNMNATKQNVSGYDGRISSCNDNIGKRKLFAGTSSSRHALSDSEGPDVMKHNTFELVRVPNEFLSKHEDLHGKFVELKVGGKSWFVKLNYYLQGSRFYAGWRKFQEECKLKFGDICLFELIDEKKCMIPRKFVERHWKDVSNPTSLRLPNGSEFKMNWVQRGEDVWLQNWKRFALSLRCGDLLVFQYKGGSDFHVIILDDKAKRNCGGRGKKAKKCTKTKDRNEKSCTNYHPNGSPSFTVKLSPYHIEGYNRLIIPRWFSKEYMNELLQQKATIRSVGEDRAWYMTLNFDKSKSSFIMQSFSKEHDLKVGDVCKFEMTQREPFLFTITIIPTTKEPCPEHFQADSVSPNLHDKFKVFVTSLDKLVVLPSELLKRHNIFSGNLVELKVEEGTWFVEVNYDQHLDYGGSLKCIPTLFSKEYSTKFEGTARIRVGKDRTWKVNRRSVMNTGWNLFVKENNLQVVDVRKFEITHEMMYIASPQQLSI*