AlfalfaGEDB | Msa0115170

M. sativa cultivar zhongmu-4 / Msa0115170

KEGG: K11426
GO: -
PFAM: PF00856.31

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0115170	XP_024638206.1	89.809	314	25	1	1	307	1	314	0.0	571

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0115170	sp\|Q9FG08\|ATXR4_ARATH	60.490	286	107	1	28	307	40	325	3.66e-122	355

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0115170	A0A396JSM6	89.809	314	25	1	1	307	1	314	0.0	571

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TFs/TRs:

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Gene ID	Type	Classification
Msa0115170	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0115170	MtrunA17_Chr1g0176091	89.809	314	25	1	1	307	1	314	0.0	571

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0115170	AT5G06620.1	60.490	286	107	1	28	307	40	325	3.72e-123	355
Msa0115170	AT5G06620.2	52.174	161	71	1	29	183	41	201	2.26e-51	170

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Find 110 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGAGATGAGAGGTTA+GGG	0.376781	1_3:-33938389	None:intergenic
AACAGAATGCAAAAGAAAGT+AGG	0.563014	1_3:-33943178	None:intergenic
AACATCGATGTACCATTGTT+TGG	0.388168	1_3:-33940697	None:intergenic
AACCTCTTTCAAAGGAACCG+AGG	0.646967	1_3:+33939845	Msa0115170:intron
AACCTTCATCAATGTCACGG+AGG	0.727757	1_3:-33941172	None:intergenic
AAGAGGGGTTCAACTTGCTA+AGG	0.581272	1_3:+33940519	Msa0115170:CDS
AAGAGTAGCAGACGGGGTGT+GGG	0.459751	1_3:-33938353	None:intergenic
AAGTCAAATTTCATAAATAT+AGG	0.397407	1_3:+33943269	Msa0115170:three_prime_UTR
AATATTAAGTGGTTGGATAC+GGG	0.495400	1_3:+33943015	Msa0115170:three_prime_UTR
AATCATCTCAGGTGTCAAAT+TGG	0.363128	1_3:-33939957	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTAATGTAGTTGAACTGAAA+TGG	+	chr1_3:33938125-33938144	Msa0115170:exon	30.0%
TTATCAAAATCCGTCCAATT+TGG	-	chr1_3:33938609-33938628	None:intergenic	30.0%
TTAGAGAAAAACTCACATAC+CGG	-	chr1_3:33938638-33938657	None:intergenic	30.0%
TTAAAGATTGTTGAAACCCA+TGG	-	chr1_3:33938679-33938698	None:intergenic	30.0%
AAACAGATAAGTGAACTTAG+GGG	-	chr1_3:33938816-33938835	None:intergenic	30.0%
GTAAACAGATAAGTGAACTT+AGG	-	chr1_3:33938818-33938837	None:intergenic	30.0%
CTTATCTGTTTACTAGTGTA+AGG	+	chr1_3:33938825-33938844	Msa0115170:intron	30.0%
AAATTTCAAACCACCAAAAC+AGG	-	chr1_3:33938976-33938995	None:intergenic	30.0%
TATACAAACTCACAATGATG+AGG	+	chr1_3:33939003-33939022	Msa0115170:intron	30.0%
ATACAAACTCACAATGATGA+GGG	+	chr1_3:33939004-33939023	Msa0115170:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	33938085	33943356	33938085	ID=Msa0115170;Name=Msa0115170
chr1_3	mRNA	33938085	33943356	33938085	ID=Msa0115170-mRNA-1;Parent=Msa0115170;Name=Msa0115170-mRNA-1;_AED=0.12;_eAED=0.12;_QI=59\|1\|1\|1\|1\|1\|7\|373\|307
chr1_3	exon	33938085	33938440	33938085	ID=Msa0115170-mRNA-1:exon:10602;Parent=Msa0115170-mRNA-1
chr1_3	exon	33938582	33938637	33938582	ID=Msa0115170-mRNA-1:exon:10603;Parent=Msa0115170-mRNA-1
chr1_3	exon	33939859	33939985	33939859	ID=Msa0115170-mRNA-1:exon:10604;Parent=Msa0115170-mRNA-1
chr1_3	exon	33940515	33940584	33940515	ID=Msa0115170-mRNA-1:exon:10605;Parent=Msa0115170-mRNA-1
chr1_3	exon	33940691	33940873	33940691	ID=Msa0115170-mRNA-1:exon:10606;Parent=Msa0115170-mRNA-1
chr1_3	exon	33941120	33941191	33941120	ID=Msa0115170-mRNA-1:exon:10607;Parent=Msa0115170-mRNA-1
chr1_3	exon	33942865	33943356	33942865	ID=Msa0115170-mRNA-1:exon:10608;Parent=Msa0115170-mRNA-1
chr1_3	five_prime_UTR	33938085	33938143	33938085	ID=Msa0115170-mRNA-1:five_prime_utr;Parent=Msa0115170-mRNA-1
chr1_3	CDS	33938144	33938440	33938144	ID=Msa0115170-mRNA-1:cds;Parent=Msa0115170-mRNA-1
chr1_3	CDS	33938582	33938637	33938582	ID=Msa0115170-mRNA-1:cds;Parent=Msa0115170-mRNA-1
chr1_3	CDS	33939859	33939985	33939859	ID=Msa0115170-mRNA-1:cds;Parent=Msa0115170-mRNA-1
chr1_3	CDS	33940515	33940584	33940515	ID=Msa0115170-mRNA-1:cds;Parent=Msa0115170-mRNA-1
chr1_3	CDS	33940691	33940873	33940691	ID=Msa0115170-mRNA-1:cds;Parent=Msa0115170-mRNA-1
chr1_3	CDS	33941120	33941191	33941120	ID=Msa0115170-mRNA-1:cds;Parent=Msa0115170-mRNA-1
chr1_3	CDS	33942865	33942983	33942865	ID=Msa0115170-mRNA-1:cds;Parent=Msa0115170-mRNA-1
chr1_3	three_prime_UTR	33942984	33943356	33942984	ID=Msa0115170-mRNA-1:three_prime_utr;Parent=Msa0115170-mRNA-1

Gene Sequence

>Msa0115170

ATGGCAGTGTCACATTCACTTCTCCGTTTAGCTTCTTCCCGCTTCACTAAACCACTTCACATCTTCTCATTCTCCACTTCTTCACCACCTCCGATTCGAGTCTCTCTCACCGACTCCGTAGGTCGCGCCGTCTTCGCAACTCGCCCAATCCCTACCGGCGATCTCATCCACACCGCCGAACCCGCCGTCTGCCACCCTTCCCCTTCCGCCCCACACCCCGTCTGCTACTCTTGCCTCGCCAGACTCCCTAACCTCTCATCTCCCTTTTGTTCCCTCCCTTGCCACAAACGCAGTCAGGAATACCACGATGTTCAGATGAGACCAAATTGGACGGATTTTGATAATTATTGCCGGAACCGAGGTTTAAAATTTCCCTTGCTGGTAAAGCGGTTGGCTTGCATGATCATATCAGGAGTTGCCAGAAGTGATAGTCTTGACATACTTCAACCTGCCAATTTGACACCTGAGATGATTTTAGAGATGGAAGAGGGGTTCAACTTGCTAAGGAATGCCTTCACAAAGGCACTTATTGCAGATGAACAAATTGCTTTTTTAACCAAACAATGGTACATCGATGTTTTGGCACGAATTCGAATCAATGCATTTCGCATTGAGTTGGCTGGTGGTGGATCATATGAAGATCTTCTTTCTTCAGCATTTGCATCTGTAGAAGCTGAAGCTGCTGTTGGAAATGCTGTCTATATTCTTCCTTCCTTCTATAATCATGACTGTGATCCCAATGCACACATTATATGGATAGATAATGCAGTGGCAAAATTGAAGGCCCTCCGTGACATTGATGAAGGTGAAGAACTCAGAATCTGCTATATTGATGCCAGTCTGGACCGTGATGCTCGGCGAGAACTATTGTTTCAAGGTTTCGGTTTTCAATGCAATTGTAGTAGGTGCTTGCATGGTGATTAG

Protein sequence

>Msa0115170

MAVSHSLLRLASSRFTKPLHIFSFSTSSPPPIRVSLTDSVGRAVFATRPIPTGDLIHTAEPAVCHPSPSAPHPVCYSCLARLPNLSSPFCSLPCHKRSQEYHDVQMRPNWTDFDNYCRNRGLKFPLLVKRLACMIISGVARSDSLDILQPANLTPEMILEMEEGFNLLRNAFTKALIADEQIAFLTKQWYIDVLARIRINAFRIELAGGGSYEDLLSSAFASVEAEAAVGNAVYILPSFYNHDCDPNAHIIWIDNAVAKLKALRDIDEGEELRICYIDASLDRDARRELLFQGFGFQCNCSRCLHGD*