Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115170 | XP_024638206.1 | 89.809 | 314 | 25 | 1 | 1 | 307 | 1 | 314 | 0.0 | 571 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115170 | sp|Q9FG08|ATXR4_ARATH | 60.490 | 286 | 107 | 1 | 28 | 307 | 40 | 325 | 3.66e-122 | 355 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115170 | A0A396JSM6 | 89.809 | 314 | 25 | 1 | 1 | 307 | 1 | 314 | 0.0 | 571 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0115170 | TR | SET |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115170 | MtrunA17_Chr1g0176091 | 89.809 | 314 | 25 | 1 | 1 | 307 | 1 | 314 | 0.0 | 571 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115170 | AT5G06620.1 | 60.490 | 286 | 107 | 1 | 28 | 307 | 40 | 325 | 3.72e-123 | 355 |
| Msa0115170 | AT5G06620.2 | 52.174 | 161 | 71 | 1 | 29 | 183 | 41 | 201 | 2.26e-51 | 170 |
Find 110 sgRNAs with CRISPR-Local
Find 379 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTAAAACTGCTCAAATTT+TGG | 0.153628 | 1_3:+33943043 | Msa0115170:three_prime_UTR |
| ATCCCAATGCACACATTATA+TGG | 0.261658 | 1_3:+33941120 | Msa0115170:CDS |
| GAACTATTGTTTCAAGGTTT+CGG | 0.305204 | 1_3:+33942921 | Msa0115170:CDS |
| TTATCAAAATCCGTCCAATT+TGG | 0.325952 | 1_3:-33938606 | None:intergenic |
| AGATGAGAGGTTAGGGAGTC+TGG | 0.327883 | 1_3:-33938382 | None:intergenic |
| AGGGTGGCAGACGGCGGGTT+CGG | 0.353679 | 1_3:-33938319 | None:intergenic |
| ACAATGGTACATCGATGTTT+TGG | 0.357468 | 1_3:+33940701 | Msa0115170:CDS |
| AGGTTTAAAATTTCCCTTGC+TGG | 0.358994 | 1_3:+33939865 | Msa0115170:CDS |
| AATCATCTCAGGTGTCAAAT+TGG | 0.363128 | 1_3:-33939957 | None:intergenic |
| CACCTACCTGACTGCGTTTG+TGG | 0.364163 | 1_3:-33938425 | None:intergenic |
| CAAGAGTAGCAGACGGGGTG+TGG | 0.371551 | 1_3:-33938354 | None:intergenic |
| GACGGGGTGTGGGGCGGAAG+GGG | 0.373805 | 1_3:-33938343 | None:intergenic |
| AAAAGGGAGATGAGAGGTTA+GGG | 0.376781 | 1_3:-33938389 | None:intergenic |
| CAAAAGGGAGATGAGAGGTT+AGG | 0.379381 | 1_3:-33938390 | None:intergenic |
| CAATATTAAGTGGTTGGATA+CGG | 0.384467 | 1_3:+33943014 | Msa0115170:three_prime_UTR |
| CTGCTATATTGATGCCAGTC+TGG | 0.385411 | 1_3:+33942881 | Msa0115170:CDS |
| AACATCGATGTACCATTGTT+TGG | 0.388168 | 1_3:-33940697 | None:intergenic |
| CGCATTGAGTTGGCTGGTGG+TGG | 0.393454 | 1_3:+33940747 | Msa0115170:CDS |
| AAGTCAAATTTCATAAATAT+AGG | 0.397407 | 1_3:+33943269 | Msa0115170:three_prime_UTR |
| TTGCTATACTTAATTTATCA+TGG | 0.398136 | 1_3:-33943143 | None:intergenic |
| GGGTGTGGGGCGGAAGGGGA+AGG | 0.399069 | 1_3:-33938339 | None:intergenic |
| ATGAGATCGCCGGTAGGGAT+TGG | 0.413001 | 1_3:-33938288 | None:intergenic |
| TTGGCTTGCATGATCATATC+AGG | 0.415237 | 1_3:+33939896 | Msa0115170:CDS |
| TATGTCAAGACTATCACTTC+TGG | 0.421083 | 1_3:-33939924 | None:intergenic |
| CGGCGAGAACTATTGTTTCA+AGG | 0.421958 | 1_3:+33942915 | Msa0115170:CDS |
| GTGAAGTGGTTTAGTGAAGC+GGG | 0.429539 | 1_3:-33938181 | None:intergenic |
| AGGGGAAGGGTGGCAGACGG+CGG | 0.431779 | 1_3:-33938325 | None:intergenic |
| GTGGGGCGGAAGGGGAAGGG+TGG | 0.436664 | 1_3:-33938335 | None:intergenic |
| TGAGATCGCCGGTAGGGATT+GGG | 0.441194 | 1_3:-33938287 | None:intergenic |
| TAGATACCATGACCCACTTT+CGG | 0.441846 | 1_3:+33943086 | Msa0115170:three_prime_UTR |
| ATCCATATAATGTGTGCATT+GGG | 0.443622 | 1_3:-33941122 | None:intergenic |
| ACCACAGTCATGATTATAGA+AGG | 0.444164 | 1_3:-33940853 | None:intergenic |
| CTCACCTCTAAAATCATCTC+AGG | 0.450152 | 1_3:-33939968 | None:intergenic |
| CAGACGGGGTGTGGGGCGGA+AGG | 0.455456 | 1_3:-33938345 | None:intergenic |
| AAGAGTAGCAGACGGGGTGT+GGG | 0.459751 | 1_3:-33938353 | None:intergenic |
| TATCCATATAATGTGTGCAT+TGG | 0.459802 | 1_3:-33941123 | None:intergenic |
| TCCCTTGCTGGTAAAGCGGT+TGG | 0.461639 | 1_3:+33939877 | Msa0115170:CDS |
| AGCATTCAATATATATTTCG+TGG | 0.461655 | 1_3:+33943120 | Msa0115170:three_prime_UTR |
| ATGTTCAGATGAGACCAAAT+TGG | 0.462577 | 1_3:+33938592 | Msa0115170:CDS |
| CTAGGATTTGCAATATTAAG+TGG | 0.464936 | 1_3:+33943004 | Msa0115170:three_prime_UTR |
| GTGGCAAGGGAGGGAACAAA+AGG | 0.469540 | 1_3:-33938406 | None:intergenic |
| CCCTTGCCACAAACGCAGTC+AGG | 0.470308 | 1_3:+33938419 | Msa0115170:CDS |
| CCTGACTGCGTTTGTGGCAA+GGG | 0.478899 | 1_3:-33938419 | None:intergenic |
| TAATGCAGTGGCAAAATTGA+AGG | 0.480874 | 1_3:+33941148 | Msa0115170:CDS |
| CAATGCATTTCGCATTGAGT+TGG | 0.481923 | 1_3:+33940737 | Msa0115170:CDS |
| AGACGGGGTGTGGGGCGGAA+GGG | 0.484220 | 1_3:-33938344 | None:intergenic |
| GGGGAAGGGTGGCAGACGGC+GGG | 0.487201 | 1_3:-33938324 | None:intergenic |
| ATCTCAGGTGTCAAATTGGC+AGG | 0.490131 | 1_3:-33939953 | None:intergenic |
| GTAATGTAGTTGAACTGAAA+TGG | 0.494966 | 1_3:+33938125 | Msa0115170:exon |
| AATATTAAGTGGTTGGATAC+GGG | 0.495400 | 1_3:+33943015 | Msa0115170:three_prime_UTR |
| GATTTGCAATATTAAGTGGT+TGG | 0.497852 | 1_3:+33943008 | Msa0115170:three_prime_UTR |
| GGTGTGGGGCGGAAGGGGAA+GGG | 0.499733 | 1_3:-33938338 | None:intergenic |
| GCCCTCCGTGACATTGATGA+AGG | 0.515818 | 1_3:+33941170 | Msa0115170:CDS |
| CCGAGCATCACGGTCCAGAC+TGG | 0.516174 | 1_3:-33942895 | None:intergenic |
| AGAGTAGCAGACGGGGTGTG+GGG | 0.520042 | 1_3:-33938352 | None:intergenic |
| TGCGAAGACGGCGCGACCTA+CGG | 0.522245 | 1_3:-33938259 | None:intergenic |
| GATTGGGCGAGTTGCGAAGA+CGG | 0.524161 | 1_3:-33938271 | None:intergenic |
| GCATTTCGCATTGAGTTGGC+TGG | 0.527315 | 1_3:+33940741 | Msa0115170:CDS |
| ACCTGACTGCGTTTGTGGCA+AGG | 0.528948 | 1_3:-33938420 | None:intergenic |
| GTAGAAGCTGAAGCTGCTGT+TGG | 0.529262 | 1_3:+33940807 | Msa0115170:CDS |
| TGCAATAAGTGCCTTTGTGA+AGG | 0.535808 | 1_3:-33940546 | None:intergenic |
| CCAGTCTGGACCGTGATGCT+CGG | 0.542110 | 1_3:+33942895 | Msa0115170:CDS |
| GTAGCAGACGGGGTGTGGGG+CGG | 0.547318 | 1_3:-33938349 | None:intergenic |
| GCGAGGCAAGAGTAGCAGAC+GGG | 0.551713 | 1_3:-33938360 | None:intergenic |
| GACTGCGTTTGTGGCAAGGG+AGG | 0.552126 | 1_3:-33938416 | None:intergenic |
| GTGGCAGACGGCGGGTTCGG+CGG | 0.556828 | 1_3:-33938316 | None:intergenic |
| AATCGGAGGTGGTGAAGAAG+TGG | 0.557461 | 1_3:-33938217 | None:intergenic |
| TGAAGCGGGAAGAAGCTAAA+CGG | 0.561812 | 1_3:-33938167 | None:intergenic |
| AACAGAATGCAAAAGAAAGT+AGG | 0.563014 | 1_3:-33943178 | None:intergenic |
| GGAAGGGGAAGGGTGGCAGA+CGG | 0.563765 | 1_3:-33938328 | None:intergenic |
| AGAGAGACTCGAATCGGAGG+TGG | 0.568166 | 1_3:-33938228 | None:intergenic |
| AGACGGCGGGTTCGGCGGTG+TGG | 0.568637 | 1_3:-33938311 | None:intergenic |
| AGCCAACCGCTTTACCAGCA+AGG | 0.574266 | 1_3:-33939879 | None:intergenic |
| GGCGGTGTGGATGAGATCGC+CGG | 0.575258 | 1_3:-33938298 | None:intergenic |
| GCCAACCGCTTTACCAGCAA+GGG | 0.575332 | 1_3:-33939878 | None:intergenic |
| CTTGTGTGTATAACCGAAAG+TGG | 0.576483 | 1_3:-33943099 | None:intergenic |
| TGTGAAGTGGTTTAGTGAAG+CGG | 0.577170 | 1_3:-33938182 | None:intergenic |
| GGGAACAAAAGGGAGATGAG+AGG | 0.577370 | 1_3:-33938395 | None:intergenic |
| AAGAGGGGTTCAACTTGCTA+AGG | 0.581272 | 1_3:+33940519 | Msa0115170:CDS |
| GCAACTCGCCCAATCCCTAC+CGG | 0.589143 | 1_3:+33938279 | Msa0115170:CDS |
| TCGGTGAGAGAGACTCGAAT+CGG | 0.592931 | 1_3:-33938234 | None:intergenic |
| GGCGAGGCAAGAGTAGCAGA+CGG | 0.594126 | 1_3:-33938361 | None:intergenic |
| AATTTCCCTTGCTGGTAAAG+CGG | 0.596787 | 1_3:+33939873 | Msa0115170:CDS |
| TGTGGATGAGATCGCCGGTA+GGG | 0.599682 | 1_3:-33938293 | None:intergenic |
| CAGTCATGATTATAGAAGGA+AGG | 0.603362 | 1_3:-33940849 | None:intergenic |
| ACTGCGTTTGTGGCAAGGGA+GGG | 0.605495 | 1_3:-33938415 | None:intergenic |
| AATTGTAGTAGGTGCTTGCA+TGG | 0.611543 | 1_3:+33942954 | Msa0115170:CDS |
| GAGAATGAGAAGATGTGAAG+TGG | 0.613144 | 1_3:-33938195 | None:intergenic |
| ACCTTCATCAATGTCACGGA+GGG | 0.613577 | 1_3:-33941171 | None:intergenic |
| TGGCAAGGGAGGGAACAAAA+GGG | 0.619033 | 1_3:-33938405 | None:intergenic |
| ATAGTTCTCGCCGAGCATCA+CGG | 0.623750 | 1_3:-33942905 | None:intergenic |
| GACGGCGCGACCTACGGAGT+CGG | 0.623769 | 1_3:-33938253 | None:intergenic |
| GTGTGGATGAGATCGCCGGT+AGG | 0.628025 | 1_3:-33938294 | None:intergenic |
| GTGAGAGAGACTCGAATCGG+AGG | 0.630122 | 1_3:-33938231 | None:intergenic |
| TTTCGCATTGAGTTGGCTGG+TGG | 0.638184 | 1_3:+33940744 | Msa0115170:CDS |
| ATGATCATGCAATTCAAGTG+TGG | 0.638581 | 1_3:-33943227 | None:intergenic |
| GTATAACCGAAAGTGGGTCA+TGG | 0.638808 | 1_3:-33943092 | None:intergenic |
| AGAGGTTAGGGAGTCTGGCG+AGG | 0.638913 | 1_3:-33938377 | None:intergenic |
| TCAGATGAGACCAAATTGGA+CGG | 0.643990 | 1_3:+33938596 | Msa0115170:CDS |
| ACAAACCTTCATCAATGTCA+CGG | 0.645369 | 1_3:-33941175 | None:intergenic |
| AACCTCTTTCAAAGGAACCG+AGG | 0.646967 | 1_3:+33939845 | Msa0115170:intron |
| CGAGGCAAGAGTAGCAGACG+GGG | 0.650002 | 1_3:-33938359 | None:intergenic |
| GTCTCTCTCACCGACTCCGT+AGG | 0.654378 | 1_3:+33938243 | Msa0115170:CDS |
| TCAACTACATTACACGAACA+AGG | 0.668735 | 1_3:-33938115 | None:intergenic |
| TCCTTCTATAATCATGACTG+TGG | 0.674418 | 1_3:+33940852 | Msa0115170:CDS |
| GCTAAGGAATGCCTTCACAA+AGG | 0.678500 | 1_3:+33940535 | Msa0115170:CDS |
| TATATGGATAGATAATGCAG+TGG | 0.693112 | 1_3:+33941136 | Msa0115170:CDS |
| AACCTTCATCAATGTCACGG+AGG | 0.727757 | 1_3:-33941172 | None:intergenic |
| TTGTGTGTATAACCGAAAGT+GGG | 0.733675 | 1_3:-33943098 | None:intergenic |
| TTGGTCTCATCTGAACATCG+TGG | 0.734725 | 1_3:-33938587 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGATCTTTATTTATTTAT+AGG | + | chr1_3:33938560-33938579 | Msa0115170:intron | 10.0% |
| !!! | TGATGATTCATTTTATTTTT+TGG | - | chr1_3:33938785-33938804 | None:intergenic | 15.0% |
| !!! | TTTTATTACTTAAAGTACAA+GGG | - | chr1_3:33939484-33939503 | None:intergenic | 15.0% |
| !!! | ATTTTATTACTTAAAGTACA+AGG | - | chr1_3:33939485-33939504 | None:intergenic | 15.0% |
| !! | GAAAACATATATTAATTGAA+GGG | - | chr1_3:33940146-33940165 | None:intergenic | 15.0% |
| !!! | TTTTTCCCTTTTAATTTTTT+AGG | + | chr1_3:33941225-33941244 | Msa0115170:intron | 15.0% |
| !!! | GCAATTAATTTTTTTTTTGA+AGG | + | chr1_3:33941330-33941349 | Msa0115170:intron | 15.0% |
| !!! | ATTAAGAAAAAGGTTTTAAA+AGG | - | chr1_3:33941544-33941563 | None:intergenic | 15.0% |
| !! | CAATTTAACTATTAAGAAAA+AGG | - | chr1_3:33941554-33941573 | None:intergenic | 15.0% |
| !!! | TCTTTCTTATTTTTATCTAT+TGG | + | chr1_3:33942083-33942102 | Msa0115170:intron | 15.0% |
| !! | GAAAGAAAAATAAATTTAAC+TGG | + | chr1_3:33942161-33942180 | Msa0115170:intron | 15.0% |
| !! | ATTAGATACTATAAGAATTT+AGG | - | chr1_3:33942244-33942263 | None:intergenic | 15.0% |
| !! | GAATAATAACATTCTATAAT+TGG | - | chr1_3:33942514-33942533 | None:intergenic | 15.0% |
| !! | AAAAAATTGACTGAAAATTA+AGG | - | chr1_3:33942587-33942606 | None:intergenic | 15.0% |
| !! | ATAAAATGTAGAACTTAATT+AGG | + | chr1_3:33942642-33942661 | Msa0115170:intron | 15.0% |
| !! | AAGTCAAATTTCATAAATAT+AGG | + | chr1_3:33943269-33943288 | Msa0115170:three_prime_UTR | 15.0% |
| !!! | ATTTTTTGGTTCAAGAATTA+TGG | - | chr1_3:33938771-33938790 | None:intergenic | 20.0% |
| !! | AAACATAAAAACACTAACAA+GGG | - | chr1_3:33938947-33938966 | None:intergenic | 20.0% |
| !! | AAAACATAAAAACACTAACA+AGG | - | chr1_3:33938948-33938967 | None:intergenic | 20.0% |
| !!! | TATTAATTGAAGGGTATTTT+AGG | - | chr1_3:33940137-33940156 | None:intergenic | 20.0% |
| !! | GGAAAACATATATTAATTGA+AGG | - | chr1_3:33940147-33940166 | None:intergenic | 20.0% |
| !!! | TTTTTACTTATAATCAACAC+TGG | + | chr1_3:33940278-33940297 | Msa0115170:intron | 20.0% |
| !! | TTCAATTAGAACATCAATAA+TGG | - | chr1_3:33940428-33940447 | None:intergenic | 20.0% |
| !!! | ATTGAAGTTTGATAAAGTTT+TGG | + | chr1_3:33940442-33940461 | Msa0115170:intron | 20.0% |
| !!! | TTTAAGTTTTAACCAAACAA+TGG | + | chr1_3:33940685-33940704 | Msa0115170:intron | 20.0% |
| !! | TGATTGATGTTATAAAAGAT+GGG | - | chr1_3:33941497-33941516 | None:intergenic | 20.0% |
| !! | ATGATTGATGTTATAAAAGA+TGG | - | chr1_3:33941498-33941517 | None:intergenic | 20.0% |
| !! | AAATTACTAAATCTTGTACT+TGG | + | chr1_3:33942218-33942237 | Msa0115170:intron | 20.0% |
| !! | TAACTCATTAATCAAACAAA+TGG | + | chr1_3:33942409-33942428 | Msa0115170:intron | 20.0% |
| !!! | ATTTTTCTCTAAAAGATTCT+AGG | + | chr1_3:33942986-33943005 | Msa0115170:three_prime_UTR | 20.0% |
| !! | TTGCTATACTTAATTTATCA+TGG | - | chr1_3:33943146-33943165 | None:intergenic | 20.0% |
| ! | TGCAAATACTTACTTATTCT+CGG | + | chr1_3:33938535-33938554 | Msa0115170:intron | 25.0% |
| !! | ATGACACTAATTTTTCTCTT+TGG | + | chr1_3:33938715-33938734 | Msa0115170:intron | 25.0% |
| ! | AAGCAGTTTAATATGTTCTA+TGG | + | chr1_3:33938744-33938763 | Msa0115170:intron | 25.0% |
| ! | TAAACAGATAAGTGAACTTA+GGG | - | chr1_3:33938817-33938836 | None:intergenic | 25.0% |
| ! | TGAAAATATAGCTCTTCAAT+CGG | - | chr1_3:33938917-33938936 | None:intergenic | 25.0% |
| ! | AAACAACACTTTATTCACTT+TGG | + | chr1_3:33939229-33939248 | Msa0115170:intron | 25.0% |
| !!! | GAATTTTCTAATTTAGCTTG+TGG | + | chr1_3:33939285-33939304 | Msa0115170:intron | 25.0% |
| !! | AAGGAACAAAGTAATTTTCA+AGG | + | chr1_3:33939330-33939349 | Msa0115170:intron | 25.0% |
| !! | CTTTTGTTAAAAACAAGGTA+AGG | - | chr1_3:33939658-33939677 | None:intergenic | 25.0% |
| !!! | TACCTTGTTTTTAACAAAAG+AGG | + | chr1_3:33939658-33939677 | Msa0115170:intron | 25.0% |
| ! | GAATAAAAGAGTCATTGAAA+AGG | - | chr1_3:33940168-33940187 | None:intergenic | 25.0% |
| ! | AACAAAATGATCCTAAAAGA+AGG | - | chr1_3:33940592-33940611 | None:intergenic | 25.0% |
| ! | TACTTAATTTCTCCTAAACA+TGG | - | chr1_3:33941010-33941029 | None:intergenic | 25.0% |
| ! | AAATGAACAATCTCACTTAT+TGG | + | chr1_3:33941089-33941108 | Msa0115170:intron | 25.0% |
| !!! | TCCCTTTTAATTTTTTAGGA+TGG | + | chr1_3:33941229-33941248 | Msa0115170:intron | 25.0% |
| ! | GCCATCCTAAAAAATTAAAA+GGG | - | chr1_3:33941233-33941252 | None:intergenic | 25.0% |
| ! | AGCCATCCTAAAAAATTAAA+AGG | - | chr1_3:33941234-33941253 | None:intergenic | 25.0% |
| !!! | TCATTGAATACACTACTTTT+TGG | - | chr1_3:33941260-33941279 | None:intergenic | 25.0% |
| !! | TTGGTGATAAAACATGATAT+AGG | - | chr1_3:33941388-33941407 | None:intergenic | 25.0% |
| ! | TCTACTCAAATTTATTGAGA+AGG | + | chr1_3:33941877-33941896 | Msa0115170:intron | 25.0% |
| ! | AAGAAAGAAAACAAGACAAT+GGG | - | chr1_3:33942071-33942090 | None:intergenic | 25.0% |
| ! | TAAGAAAGAAAACAAGACAA+TGG | - | chr1_3:33942072-33942091 | None:intergenic | 25.0% |
| ! | AGATTTAGTAATTTCTTCTG+AGG | - | chr1_3:33942212-33942231 | None:intergenic | 25.0% |
| ! | TCATTCATGCAATATATTAG+TGG | - | chr1_3:33942357-33942376 | None:intergenic | 25.0% |
| ! | AATTGGATGATTACATACAT+TGG | - | chr1_3:33942497-33942516 | None:intergenic | 25.0% |
| !! | AGTTGATCAATGATAGTTTT+AGG | - | chr1_3:33942821-33942840 | None:intergenic | 25.0% |
| !! | ATGTAAAACTGCTCAAATTT+TGG | + | chr1_3:33943043-33943062 | Msa0115170:three_prime_UTR | 25.0% |
| !! | TGTAAAACTGCTCAAATTTT+GGG | + | chr1_3:33943044-33943063 | Msa0115170:three_prime_UTR | 25.0% |
| ! | AGCATTCAATATATATTTCG+TGG | + | chr1_3:33943120-33943139 | Msa0115170:three_prime_UTR | 25.0% |
| !! | TTCTTTTGCATTCTGTTTTA+TGG | + | chr1_3:33943184-33943203 | Msa0115170:three_prime_UTR | 25.0% |
| !! | TTTTATGGTTAAACATCACT+AGG | + | chr1_3:33943199-33943218 | Msa0115170:three_prime_UTR | 25.0% |
| !!! | GATCATTTTTTTTACTGAAG+AGG | + | chr1_3:33943244-33943263 | Msa0115170:three_prime_UTR | 25.0% |
| GTAATGTAGTTGAACTGAAA+TGG | + | chr1_3:33938125-33938144 | Msa0115170:exon | 30.0% | |
| TTATCAAAATCCGTCCAATT+TGG | - | chr1_3:33938609-33938628 | None:intergenic | 30.0% | |
| !! | CGGATTTTGATAATTATTGC+CGG | + | chr1_3:33938616-33938635 | Msa0115170:CDS | 30.0% |
| TTAGAGAAAAACTCACATAC+CGG | - | chr1_3:33938638-33938657 | None:intergenic | 30.0% | |
| TTAAAGATTGTTGAAACCCA+TGG | - | chr1_3:33938679-33938698 | None:intergenic | 30.0% | |
| AAACAGATAAGTGAACTTAG+GGG | - | chr1_3:33938816-33938835 | None:intergenic | 30.0% | |
| GTAAACAGATAAGTGAACTT+AGG | - | chr1_3:33938818-33938837 | None:intergenic | 30.0% | |
| CTTATCTGTTTACTAGTGTA+AGG | + | chr1_3:33938825-33938844 | Msa0115170:intron | 30.0% | |
| ! | TATGTTTTCATGACCTGTTT+TGG | + | chr1_3:33938960-33938979 | Msa0115170:intron | 30.0% |
| AAATTTCAAACCACCAAAAC+AGG | - | chr1_3:33938976-33938995 | None:intergenic | 30.0% | |
| TATACAAACTCACAATGATG+AGG | + | chr1_3:33939003-33939022 | Msa0115170:intron | 30.0% | |
| ATACAAACTCACAATGATGA+GGG | + | chr1_3:33939004-33939023 | Msa0115170:intron | 30.0% | |
| CAAAATTGTGTCTCAGATAA+AGG | + | chr1_3:33939371-33939390 | Msa0115170:intron | 30.0% | |
| ! | GGTTGGTTATAAACAGAATT+GGG | + | chr1_3:33939405-33939424 | Msa0115170:intron | 30.0% |
| !! | AAGTTGAATGCTTTGTTTGT+TGG | + | chr1_3:33939448-33939467 | Msa0115170:intron | 30.0% |
| !! | AGTTGAATGCTTTGTTTGTT+GGG | + | chr1_3:33939449-33939468 | Msa0115170:intron | 30.0% |
| ATCATGTATAGCCCTAAAAA+AGG | + | chr1_3:33939558-33939577 | Msa0115170:intron | 30.0% | |
| TCATGTATAGCCCTAAAAAA+GGG | + | chr1_3:33939559-33939578 | Msa0115170:intron | 30.0% | |
| ! | AGCCTCTTTTGTTAAAAACA+AGG | - | chr1_3:33939663-33939682 | None:intergenic | 30.0% |
| ATTATGTATAGCCCTATGAT+AGG | + | chr1_3:33939696-33939715 | Msa0115170:intron | 30.0% | |
| ! | GTTTCAGTGATTTGTCATTA+GGG | - | chr1_3:33939743-33939762 | None:intergenic | 30.0% |
| ! | TGTTTCAGTGATTTGTCATT+AGG | - | chr1_3:33939744-33939763 | None:intergenic | 30.0% |
| AATTACCTAACCTCTTTCAA+AGG | + | chr1_3:33939837-33939856 | Msa0115170:intron | 30.0% | |
| AATGACAATAATCAGTTGAC+AGG | + | chr1_3:33940009-33940028 | Msa0115170:intron | 30.0% | |
| GTTAGTTGTGTACATTTGAA+TGG | + | chr1_3:33940057-33940076 | Msa0115170:intron | 30.0% | |
| !!! | ATTGAAGGGTATTTTAGGAT+AGG | - | chr1_3:33940132-33940151 | None:intergenic | 30.0% |
| TTACTTATAATCAACACTGG+AGG | + | chr1_3:33940281-33940300 | Msa0115170:intron | 30.0% | |
| !!! | TTTCATCTACCCTTTTTTCT+TGG | + | chr1_3:33940333-33940352 | Msa0115170:intron | 30.0% |
| !! | GCATAACATCATTTTTCAGA+TGG | + | chr1_3:33940496-33940515 | Msa0115170:intron | 30.0% |
| !! | ATCATTTTTCAGATGGAAGA+GGG | + | chr1_3:33940503-33940522 | Msa0115170:intron | 30.0% |
| ! | ATTGCTTGTATCCTTCTTTT+AGG | + | chr1_3:33940578-33940597 | Msa0115170:intron | 30.0% |
| TGTTGAGAGATTACTTATCA+TGG | + | chr1_3:33940659-33940678 | Msa0115170:intron | 30.0% | |
| AATATTTGCCTTCCATGTTT+AGG | + | chr1_3:33940995-33941014 | Msa0115170:intron | 30.0% | |
| TAATTTCTCCTAAACATGGA+AGG | - | chr1_3:33941006-33941025 | None:intergenic | 30.0% | |
| AAAAATGACAAGGTTTAGAG+AGG | - | chr1_3:33941060-33941079 | None:intergenic | 30.0% | |
| ATCCATATAATGTGTGCATT+GGG | - | chr1_3:33941125-33941144 | None:intergenic | 30.0% | |
| TATCCATATAATGTGTGCAT+TGG | - | chr1_3:33941126-33941145 | None:intergenic | 30.0% | |
| TATATGGATAGATAATGCAG+TGG | + | chr1_3:33941136-33941155 | Msa0115170:CDS | 30.0% | |
| AATACATCAAAATGAGTAGC+AGG | - | chr1_3:33941293-33941312 | None:intergenic | 30.0% | |
| ! | GATGTTATAAAAGATGGGTT+GGG | - | chr1_3:33941492-33941511 | None:intergenic | 30.0% |
| TGATGTTATAAAAGATGGGT+TGG | - | chr1_3:33941493-33941512 | None:intergenic | 30.0% | |
| TGGATGCAATTTCAAGAAAA+TGG | - | chr1_3:33941720-33941739 | None:intergenic | 30.0% | |
| AAGATTATGTCAACCTTTCT+TGG | - | chr1_3:33941740-33941759 | None:intergenic | 30.0% | |
| !! | ACTCTTCTGAAACAAAATCA+GGG | - | chr1_3:33941972-33941991 | None:intergenic | 30.0% |
| !! | AACTCTTCTGAAACAAAATC+AGG | - | chr1_3:33941973-33941992 | None:intergenic | 30.0% |
| AGAAAGAAAACAAGACAATG+GGG | - | chr1_3:33942070-33942089 | None:intergenic | 30.0% | |
| GGAATTAAAAGTTAGCTGTA+AGG | + | chr1_3:33942430-33942449 | Msa0115170:intron | 30.0% | |
| ACATACATTGGTATATTGCA+TGG | - | chr1_3:33942485-33942504 | None:intergenic | 30.0% | |
| GTGTTCTTGCTAAATAATGT+TGG | + | chr1_3:33942546-33942565 | Msa0115170:intron | 30.0% | |
| CTATAAGAGAATGACTATGA+AGG | - | chr1_3:33942617-33942636 | None:intergenic | 30.0% | |
| GCACAAATGTAAGAAAATGA+AGG | - | chr1_3:33942732-33942751 | None:intergenic | 30.0% | |
| TTTCTTACATTTGTGCTAGA+AGG | + | chr1_3:33942736-33942755 | Msa0115170:intron | 30.0% | |
| GAACTATTGTTTCAAGGTTT+CGG | + | chr1_3:33942921-33942940 | Msa0115170:CDS | 30.0% | |
| ! | GTTTTCAATGCAATTGTAGT+AGG | + | chr1_3:33942943-33942962 | Msa0115170:CDS | 30.0% |
| CTAGGATTTGCAATATTAAG+TGG | + | chr1_3:33943004-33943023 | Msa0115170:three_prime_UTR | 30.0% | |
| GATTTGCAATATTAAGTGGT+TGG | + | chr1_3:33943008-33943027 | Msa0115170:three_prime_UTR | 30.0% | |
| CAATATTAAGTGGTTGGATA+CGG | + | chr1_3:33943014-33943033 | Msa0115170:three_prime_UTR | 30.0% | |
| AATATTAAGTGGTTGGATAC+GGG | + | chr1_3:33943015-33943034 | Msa0115170:three_prime_UTR | 30.0% | |
| AACAGAATGCAAAAGAAAGT+AGG | - | chr1_3:33943181-33943200 | None:intergenic | 30.0% | |
| TCAACTACATTACACGAACA+AGG | - | chr1_3:33938118-33938137 | None:intergenic | 35.0% | |
| ATGTTCAGATGAGACCAAAT+TGG | + | chr1_3:33938592-33938611 | Msa0115170:CDS | 35.0% | |
| ATTAGCATCTTCAATTGCCA+TGG | + | chr1_3:33938659-33938678 | Msa0115170:intron | 35.0% | |
| TTAGCATCTTCAATTGCCAT+GGG | + | chr1_3:33938660-33938679 | Msa0115170:intron | 35.0% | |
| TGTTTACTAGTGTAAGGTCT+GGG | + | chr1_3:33938831-33938850 | Msa0115170:intron | 35.0% | |
| TGAATCAGACTTATTGTTGG+AGG | - | chr1_3:33938867-33938886 | None:intergenic | 35.0% | |
| GTCTGAATCAGACTTATTGT+TGG | - | chr1_3:33938870-33938889 | None:intergenic | 35.0% | |
| TACAAACTCACAATGATGAG+GGG | + | chr1_3:33939005-33939024 | Msa0115170:intron | 35.0% | |
| TAAAGTTGTTGTCATGTGAC+TGG | + | chr1_3:33939046-33939065 | Msa0115170:intron | 35.0% | |
| AGCCTCTTGTGTAAAAAACA+GGG | + | chr1_3:33939096-33939115 | Msa0115170:intron | 35.0% | |
| TCTTGTGTAAAAAACAGGGA+GGG | + | chr1_3:33939100-33939119 | Msa0115170:intron | 35.0% | |
| !! | CTTTATTCACTTTGGTTCTC+TGG | + | chr1_3:33939237-33939256 | Msa0115170:intron | 35.0% |
| TCAAATGCAAGTAGTCAAAG+AGG | + | chr1_3:33939260-33939279 | Msa0115170:intron | 35.0% | |
| CAAATGCAAGTAGTCAAAGA+GGG | + | chr1_3:33939261-33939280 | Msa0115170:intron | 35.0% | |
| !! | TAATTTAGCTTGTGGTGATG+TGG | + | chr1_3:33939293-33939312 | Msa0115170:intron | 35.0% |
| !! | TCTGAGACACAATTTTGACA+AGG | - | chr1_3:33939368-33939387 | None:intergenic | 35.0% |
| TCAGATAAAGGTCTCATCAT+GGG | + | chr1_3:33939383-33939402 | Msa0115170:intron | 35.0% | |
| !! | GGGTTGGTTATAAACAGAAT+TGG | + | chr1_3:33939404-33939423 | Msa0115170:intron | 35.0% |
| ACCAGAAATTGCCTATCATA+GGG | - | chr1_3:33939710-33939729 | None:intergenic | 35.0% | |
| ! | AGGTTAGGTAATTGTCACTT+AGG | - | chr1_3:33939830-33939849 | None:intergenic | 35.0% |
| ! | GCAAGGGAAATTTTAAACCT+CGG | - | chr1_3:33939865-33939884 | None:intergenic | 35.0% |
| ! | AGGTTTAAAATTTCCCTTGC+TGG | + | chr1_3:33939865-33939884 | Msa0115170:CDS | 35.0% |
| TATGTCAAGACTATCACTTC+TGG | - | chr1_3:33939927-33939946 | None:intergenic | 35.0% | |
| AATCATCTCAGGTGTCAAAT+TGG | - | chr1_3:33939960-33939979 | None:intergenic | 35.0% | |
| ATTGAACAACTTCTCACGAA+GGG | + | chr1_3:33940190-33940209 | Msa0115170:intron | 35.0% | |
| AGCTTTCCTTCGAAAACTAA+CGG | - | chr1_3:33940370-33940389 | None:intergenic | 35.0% | |
| !! | CATCATTTTTCAGATGGAAG+AGG | + | chr1_3:33940502-33940521 | Msa0115170:intron | 35.0% |
| !! | TCATTTTTCAGATGGAAGAG+GGG | + | chr1_3:33940504-33940523 | Msa0115170:intron | 35.0% |
| AACATCGATGTACCATTGTT+TGG | - | chr1_3:33940700-33940719 | None:intergenic | 35.0% | |
| ! | ACAATGGTACATCGATGTTT+TGG | + | chr1_3:33940701-33940720 | Msa0115170:CDS | 35.0% |
| CAGTCATGATTATAGAAGGA+AGG | - | chr1_3:33940852-33940871 | None:intergenic | 35.0% | |
| TCCTTCTATAATCATGACTG+TGG | + | chr1_3:33940852-33940871 | Msa0115170:CDS | 35.0% | |
| ACCACAGTCATGATTATAGA+AGG | - | chr1_3:33940856-33940875 | None:intergenic | 35.0% | |
| ! | TCTATGCGTGTGTAATTTTC+TGG | - | chr1_3:33941034-33941053 | None:intergenic | 35.0% |
| TCTCAGGGTTAAAAATGACA+AGG | - | chr1_3:33941070-33941089 | None:intergenic | 35.0% | |
| GTGAGATTGTTCATTTCTCA+GGG | - | chr1_3:33941085-33941104 | None:intergenic | 35.0% | |
| AGTGAGATTGTTCATTTCTC+AGG | - | chr1_3:33941086-33941105 | None:intergenic | 35.0% | |
| ATCCCAATGCACACATTATA+TGG | + | chr1_3:33941120-33941139 | Msa0115170:CDS | 35.0% | |
| TAATGCAGTGGCAAAATTGA+AGG | + | chr1_3:33941148-33941167 | Msa0115170:CDS | 35.0% | |
| ACAAACCTTCATCAATGTCA+CGG | - | chr1_3:33941178-33941197 | None:intergenic | 35.0% | |
| AGGAAGTTTCTGCAACTTAA+TGG | + | chr1_3:33941350-33941369 | Msa0115170:intron | 35.0% | |
| AGTTTCTGCAACTTAATGGA+AGG | + | chr1_3:33941354-33941373 | Msa0115170:intron | 35.0% | |
| ! | CATGTTTTATCACCAAGATC+TGG | + | chr1_3:33941392-33941411 | Msa0115170:intron | 35.0% |
| ! | AACCTTTTCAATCCAGGTTA+TGG | - | chr1_3:33941419-33941438 | None:intergenic | 35.0% |
| ATTGAAAAGGTTGCTGTCTT+AGG | + | chr1_3:33941427-33941446 | Msa0115170:intron | 35.0% | |
| !! | TAAAAGATGGGTTGGGAAAA+AGG | - | chr1_3:33941485-33941504 | None:intergenic | 35.0% |
| ! | TTGAAGCCTATAGTGTTGTT+TGG | + | chr1_3:33941591-33941610 | Msa0115170:intron | 35.0% |
| CATGTACCAAACAACACTAT+AGG | - | chr1_3:33941600-33941619 | None:intergenic | 35.0% | |
| CTTGAAATTGCATCCAAGAA+AGG | + | chr1_3:33941724-33941743 | Msa0115170:intron | 35.0% | |
| GAAACCATTTGTTTATCCCT+TGG | + | chr1_3:33941799-33941818 | Msa0115170:intron | 35.0% | |
| ATCACCAAGGGATAAACAAA+TGG | - | chr1_3:33941806-33941825 | None:intergenic | 35.0% | |
| CAGATTTGAATGACTTACCA+TGG | + | chr1_3:33942030-33942049 | Msa0115170:intron | 35.0% | |
| ! | GAATGACTTACCATGGATTT+TGG | + | chr1_3:33942037-33942056 | Msa0115170:intron | 35.0% |
| !!! | ACTTACCATGGATTTTGGTT+TGG | + | chr1_3:33942042-33942061 | Msa0115170:intron | 35.0% |
| GAAAGAAAACAAGACAATGG+GGG | - | chr1_3:33942069-33942088 | None:intergenic | 35.0% | |
| GTATTACCGAGTCTTAGATA+AGG | + | chr1_3:33942105-33942124 | Msa0115170:intron | 35.0% | |
| ! | GTATCTAATTTCCTCGCTTT+TGG | + | chr1_3:33942255-33942274 | Msa0115170:intron | 35.0% |
| TATAAGATAGCAGACCTAGA+TGG | + | chr1_3:33942768-33942787 | Msa0115170:intron | 35.0% | |
| AACCATCTTTGGTAAATTGC+AGG | + | chr1_3:33942843-33942862 | Msa0115170:intron | 35.0% | |
| TTGTGTGTATAACCGAAAGT+GGG | - | chr1_3:33943101-33943120 | None:intergenic | 35.0% | |
| ATGATCATGCAATTCAAGTG+TGG | - | chr1_3:33943230-33943249 | None:intergenic | 35.0% | |
| TGTGAAGTGGTTTAGTGAAG+CGG | - | chr1_3:33938185-33938204 | None:intergenic | 40.0% | |
| GAGAATGAGAAGATGTGAAG+TGG | - | chr1_3:33938198-33938217 | None:intergenic | 40.0% | |
| AAAAGGGAGATGAGAGGTTA+GGG | - | chr1_3:33938392-33938411 | None:intergenic | 40.0% | |
| TTGATACCTGACTTCACTTC+TGG | + | chr1_3:33938455-33938474 | Msa0115170:intron | 40.0% | |
| TCAGATGAGACCAAATTGGA+CGG | + | chr1_3:33938596-33938615 | Msa0115170:CDS | 40.0% | |
| ! | AGTGTCATTAATCATGCGAG+AGG | - | chr1_3:33938703-33938722 | None:intergenic | 40.0% |
| CTGTTTACTAGTGTAAGGTC+TGG | + | chr1_3:33938830-33938849 | Msa0115170:intron | 40.0% | |
| !! | GTTTTCATGACCTGTTTTGG+TGG | + | chr1_3:33938963-33938982 | Msa0115170:intron | 40.0% |
| CAGCCTCTTGTGTAAAAAAC+AGG | + | chr1_3:33939095-33939114 | Msa0115170:intron | 40.0% | |
| !!! | CTCCCTGTTTTTTACACAAG+AGG | - | chr1_3:33939101-33939120 | None:intergenic | 40.0% |
| CTCTTGTGTAAAAAACAGGG+AGG | + | chr1_3:33939099-33939118 | Msa0115170:intron | 40.0% | |
| TGTAAAAAACAGGGAGGGTA+AGG | + | chr1_3:33939105-33939124 | Msa0115170:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | + | chr1_3:33939131-33939150 | Msa0115170:intron | 40.0% | |
| CTCAGATAAAGGTCTCATCA+TGG | + | chr1_3:33939382-33939401 | Msa0115170:intron | 40.0% | |
| CAGATAAAGGTCTCATCATG+GGG | + | chr1_3:33939384-33939403 | Msa0115170:intron | 40.0% | |
| GTGTACAATACACCAATGGT+GGG | - | chr1_3:33939633-33939652 | None:intergenic | 40.0% | |
| TGTGTACAATACACCAATGG+TGG | - | chr1_3:33939634-33939653 | None:intergenic | 40.0% | |
| ! | TAACAAAAGAGGCTGTTTCC+AGG | + | chr1_3:33939669-33939688 | Msa0115170:intron | 40.0% |
| ! | AACAAAAGAGGCTGTTTCCA+GGG | + | chr1_3:33939670-33939689 | Msa0115170:intron | 40.0% |
| GGGCTATACATAATAATCCC+TGG | - | chr1_3:33939690-33939709 | None:intergenic | 40.0% | |
| GACCAGAAATTGCCTATCAT+AGG | - | chr1_3:33939711-33939730 | None:intergenic | 40.0% | |
| !! | ATGATAGGCAATTTCTGGTC+TGG | + | chr1_3:33939711-33939730 | Msa0115170:intron | 40.0% |
| AATTTCCCTTGCTGGTAAAG+CGG | + | chr1_3:33939873-33939892 | Msa0115170:CDS | 40.0% | |
| !! | TTGGCTTGCATGATCATATC+AGG | + | chr1_3:33939896-33939915 | Msa0115170:CDS | 40.0% |
| ! | GACACCTGAGATGATTTTAG+AGG | + | chr1_3:33939964-33939983 | Msa0115170:CDS | 40.0% |
| !! | CTCACCTCTAAAATCATCTC+AGG | - | chr1_3:33939971-33939990 | None:intergenic | 40.0% |
| ATTGAGAACTACCAGTGGAT+TGG | - | chr1_3:33940093-33940112 | None:intergenic | 40.0% | |
| GAATCATTGAGAACTACCAG+TGG | - | chr1_3:33940098-33940117 | None:intergenic | 40.0% | |
| CATTGAACAACTTCTCACGA+AGG | + | chr1_3:33940189-33940208 | Msa0115170:intron | 40.0% | |
| GTATTGTATGTCCAACTAGC+AGG | + | chr1_3:33940306-33940325 | Msa0115170:intron | 40.0% | |
| GGTAGGCATCCAAGAAAAAA+GGG | - | chr1_3:33940345-33940364 | None:intergenic | 40.0% | |
| TGGTAGGCATCCAAGAAAAA+AGG | - | chr1_3:33940346-33940365 | None:intergenic | 40.0% | |
| GCTTTCCTTCGAAAACTAAC+GGG | - | chr1_3:33940369-33940388 | None:intergenic | 40.0% | |
| TGCAATAAGTGCCTTTGTGA+AGG | - | chr1_3:33940549-33940568 | None:intergenic | 40.0% | |
| CAATGCATTTCGCATTGAGT+TGG | + | chr1_3:33940737-33940756 | Msa0115170:CDS | 40.0% | |
| AAGCACAGTTGTCTCAAAAC+TGG | + | chr1_3:33940954-33940973 | Msa0115170:intron | 40.0% | |
| GTCCATAACCTGGATTGAAA+AGG | + | chr1_3:33941414-33941433 | Msa0115170:intron | 40.0% | |
| GCTCTTTATGCCAAGCATAA+GGG | + | chr1_3:33941692-33941711 | Msa0115170:intron | 40.0% | |
| ACCTATTACGCAATCACCAA+GGG | - | chr1_3:33941818-33941837 | None:intergenic | 40.0% | |
| ! | TTGGTGATTGCGTAATAGGT+GGG | + | chr1_3:33941818-33941837 | Msa0115170:intron | 40.0% |
| TGAGAAGGAAATGCTTGTGA+CGG | + | chr1_3:33941892-33941911 | Msa0115170:intron | 40.0% | |
| TTTCTTTCGTAACTCCACTC+TGG | + | chr1_3:33941924-33941943 | Msa0115170:intron | 40.0% | |
| ! | GTCAAGCCTTATCTAAGACT+CGG | - | chr1_3:33942114-33942133 | None:intergenic | 40.0% |
| !! | TCTAATTTCCTCGCTTTTGG+TGG | + | chr1_3:33942258-33942277 | Msa0115170:intron | 40.0% |
| GTTAGCTGTAAGGAGCTTAA+AGG | + | chr1_3:33942440-33942459 | Msa0115170:intron | 40.0% | |
| TGATCAACTGCAACCATCTT+TGG | + | chr1_3:33942832-33942851 | Msa0115170:intron | 40.0% | |
| CACCTGCAATTTACCAAAGA+TGG | - | chr1_3:33942848-33942867 | None:intergenic | 40.0% | |
| AATTGTAGTAGGTGCTTGCA+TGG | + | chr1_3:33942954-33942973 | Msa0115170:CDS | 40.0% | |
| TAGATACCATGACCCACTTT+CGG | + | chr1_3:33943086-33943105 | Msa0115170:three_prime_UTR | 40.0% | |
| CTTGTGTGTATAACCGAAAG+TGG | - | chr1_3:33943102-33943121 | None:intergenic | 40.0% | |
| TGAAGCGGGAAGAAGCTAAA+CGG | - | chr1_3:33938170-33938189 | None:intergenic | 45.0% | |
| GTGAAGTGGTTTAGTGAAGC+GGG | - | chr1_3:33938184-33938203 | None:intergenic | 45.0% | |
| CAAAAGGGAGATGAGAGGTT+AGG | - | chr1_3:33938393-33938412 | None:intergenic | 45.0% | |
| TTGGTCTCATCTGAACATCG+TGG | - | chr1_3:33938590-33938609 | None:intergenic | 45.0% | |
| GTCTGATTCAGACAGTACAG+TGG | + | chr1_3:33938877-33938896 | Msa0115170:intron | 45.0% | |
| ACAATGATGAGGGGTAACCT+TGG | + | chr1_3:33939014-33939033 | Msa0115170:intron | 45.0% | |
| TCATGTGACTGGAAAGTCAC+AGG | + | chr1_3:33939057-33939076 | Msa0115170:intron | 45.0% | |
| AAAGTCACAGGTTCAAGTCC+TGG | + | chr1_3:33939069-33939088 | Msa0115170:intron | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | - | chr1_3:33939090-33939109 | None:intergenic | 45.0% |
| GCTGCGTACAATACACCAAA+TGG | + | chr1_3:33939127-33939146 | Msa0115170:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | + | chr1_3:33939130-33939149 | Msa0115170:intron | 45.0% | |
| CTAAAGCTCCCAATTAGGCA+GGG | - | chr1_3:33939170-33939189 | None:intergenic | 45.0% | |
| ACTAAAGCTCCCAATTAGGC+AGG | - | chr1_3:33939171-33939190 | None:intergenic | 45.0% | |
| GTGCACTAAAGCTCCCAATT+AGG | - | chr1_3:33939175-33939194 | None:intergenic | 45.0% | |
| ! | AATTGGGAGCTTTAGTGCAC+CGG | + | chr1_3:33939175-33939194 | Msa0115170:intron | 45.0% |
| AGCCTGTATAAAGAGCAACC+CGG | - | chr1_3:33939197-33939216 | None:intergenic | 45.0% | |
| !! | TGTGGTGTCTCTGAGATGTA+AGG | + | chr1_3:33939311-33939330 | Msa0115170:intron | 45.0% |
| TAAAGGTCTCATCATGGGGT+TGG | + | chr1_3:33939388-33939407 | Msa0115170:intron | 45.0% | |
| GGCTGTGTACAATACACCAA+TGG | - | chr1_3:33939637-33939656 | None:intergenic | 45.0% | |
| GCCCTATGATAGGCAATTTC+TGG | + | chr1_3:33939706-33939725 | Msa0115170:intron | 45.0% | |
| ! | CGGTTCCTTTGAAAGAGGTT+AGG | - | chr1_3:33939845-33939864 | None:intergenic | 45.0% |
| AACCTCTTTCAAAGGAACCG+AGG | + | chr1_3:33939845-33939864 | Msa0115170:intron | 45.0% | |
| ! | AACCTCGGTTCCTTTGAAAG+AGG | - | chr1_3:33939850-33939869 | None:intergenic | 45.0% |
| ATCTCAGGTGTCAAATTGGC+AGG | - | chr1_3:33939956-33939975 | None:intergenic | 45.0% | |
| !! | GATGAAAAGTGCCTGCTAGT+TGG | - | chr1_3:33940320-33940339 | None:intergenic | 45.0% |
| ! | TTCGAAAACTAACGGGTGGT+AGG | - | chr1_3:33940362-33940381 | None:intergenic | 45.0% |
| !!! | TACCACCCGTTAGTTTTCGA+AGG | + | chr1_3:33940361-33940380 | Msa0115170:intron | 45.0% |
| TTCCTTCGAAAACTAACGGG+TGG | - | chr1_3:33940366-33940385 | None:intergenic | 45.0% | |
| !! | AAGAGGGGTTCAACTTGCTA+AGG | + | chr1_3:33940519-33940538 | Msa0115170:CDS | 45.0% |
| GCTAAGGAATGCCTTCACAA+AGG | + | chr1_3:33940535-33940554 | Msa0115170:CDS | 45.0% | |
| ACCTTCATCAATGTCACGGA+GGG | - | chr1_3:33941174-33941193 | None:intergenic | 45.0% | |
| AACCTTCATCAATGTCACGG+AGG | - | chr1_3:33941175-33941194 | None:intergenic | 45.0% | |
| ! | GACAGCAACCTTTTCAATCC+AGG | - | chr1_3:33941425-33941444 | None:intergenic | 45.0% |
| GTGCTTTGCTGCCAATCTTT+GGG | + | chr1_3:33941661-33941680 | Msa0115170:intron | 45.0% | |
| AGCGTTACGAACCCAAAGAT+TGG | - | chr1_3:33941675-33941694 | None:intergenic | 45.0% | |
| CGCTCTTTATGCCAAGCATA+AGG | + | chr1_3:33941691-33941710 | Msa0115170:intron | 45.0% | |
| GAAAATGGCACCCTTATGCT+TGG | - | chr1_3:33941705-33941724 | None:intergenic | 45.0% | |
| TGAGTGTGACTTCTCTCTAG+TGG | + | chr1_3:33941765-33941784 | Msa0115170:intron | 45.0% | |
| ! | TCCCTTGGTGATTGCGTAAT+AGG | + | chr1_3:33941814-33941833 | Msa0115170:intron | 45.0% |
| CACCTATTACGCAATCACCA+AGG | - | chr1_3:33941819-33941838 | None:intergenic | 45.0% | |
| ! | CTTGGTGATTGCGTAATAGG+TGG | + | chr1_3:33941817-33941836 | Msa0115170:intron | 45.0% |
| ACTCCACTCTGGCATTTACT+TGG | + | chr1_3:33941935-33941954 | Msa0115170:intron | 45.0% | |
| TCAGTACCATGCTACCATCT+AGG | - | chr1_3:33942785-33942804 | None:intergenic | 45.0% | |
| CTGCTATATTGATGCCAGTC+TGG | + | chr1_3:33942881-33942900 | Msa0115170:CDS | 45.0% | |
| CGGCGAGAACTATTGTTTCA+AGG | + | chr1_3:33942915-33942934 | Msa0115170:CDS | 45.0% | |
| GTATAACCGAAAGTGGGTCA+TGG | - | chr1_3:33943095-33943114 | None:intergenic | 45.0% | |
| AATCGGAGGTGGTGAAGAAG+TGG | - | chr1_3:33938220-33938239 | None:intergenic | 50.0% | |
| TCGGTGAGAGAGACTCGAAT+CGG | - | chr1_3:33938237-33938256 | None:intergenic | 50.0% | |
| AGATGAGAGGTTAGGGAGTC+TGG | - | chr1_3:33938385-33938404 | None:intergenic | 50.0% | |
| GGGAACAAAAGGGAGATGAG+AGG | - | chr1_3:33938398-33938417 | None:intergenic | 50.0% | |
| TGGCAAGGGAGGGAACAAAA+GGG | - | chr1_3:33938408-33938427 | None:intergenic | 50.0% | |
| ACAGCTCCAGAAGTGAAGTC+AGG | - | chr1_3:33938464-33938483 | None:intergenic | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | - | chr1_3:33939034-33939053 | None:intergenic | 50.0% | |
| ! | ATTGGGAGCTTTAGTGCACC+GGG | + | chr1_3:33939176-33939195 | Msa0115170:intron | 50.0% |
| CACCGGGTTGCTCTTTATAC+AGG | + | chr1_3:33939192-33939211 | Msa0115170:intron | 50.0% | |
| TTCCTAGACGTTGCGTTTGG+TGG | - | chr1_3:33939605-33939624 | None:intergenic | 50.0% | |
| ACCAAACGCAACGTCTAGGA+AGG | + | chr1_3:33939604-33939623 | Msa0115170:intron | 50.0% | |
| CCAAACGCAACGTCTAGGAA+GGG | + | chr1_3:33939605-33939624 | Msa0115170:intron | 50.0% | |
| CAAACGCAACGTCTAGGAAG+GGG | + | chr1_3:33939606-33939625 | Msa0115170:intron | 50.0% | |
| GAAGATCCTCTCCAATCCAC+TGG | + | chr1_3:33940079-33940098 | Msa0115170:intron | 50.0% | |
| !! | GAACTACCAGTGGATTGGAG+AGG | - | chr1_3:33940088-33940107 | None:intergenic | 50.0% |
| !! | GCATTTCGCATTGAGTTGGC+TGG | + | chr1_3:33940741-33940760 | Msa0115170:CDS | 50.0% |
| !! | TTTCGCATTGAGTTGGCTGG+TGG | + | chr1_3:33940744-33940763 | Msa0115170:CDS | 50.0% |
| GTAGAAGCTGAAGCTGCTGT+TGG | + | chr1_3:33940807-33940826 | Msa0115170:CDS | 50.0% | |
| CCAGGTTATGGACCAGATCT+TGG | - | chr1_3:33941407-33941426 | None:intergenic | 50.0% | |
| CCAAGATCTGGTCCATAACC+TGG | + | chr1_3:33941404-33941423 | Msa0115170:intron | 50.0% | |
| TAGATAGTGCAGCCACCCTT+GGG | + | chr1_3:33941638-33941657 | Msa0115170:intron | 50.0% | |
| GGTGCTTTGCTGCCAATCTT+TGG | + | chr1_3:33941660-33941679 | Msa0115170:intron | 50.0% | |
| CCACTCTGGCATTTACTTGG+CGG | + | chr1_3:33941938-33941957 | Msa0115170:intron | 50.0% | |
| CACTCTGGCATTTACTTGGC+GGG | + | chr1_3:33941939-33941958 | Msa0115170:intron | 50.0% | |
| GGGGACCAAACCAAAATCCA+TGG | - | chr1_3:33942050-33942069 | None:intergenic | 50.0% | |
| ACTCTTCACCACCAAAAGCG+AGG | - | chr1_3:33942269-33942288 | None:intergenic | 50.0% | |
| AGCAGACCTAGATGGTAGCA+TGG | + | chr1_3:33942776-33942795 | Msa0115170:intron | 50.0% | |
| ATAGTTCTCGCCGAGCATCA+CGG | - | chr1_3:33942908-33942927 | None:intergenic | 50.0% | |
| AGAGAGACTCGAATCGGAGG+TGG | - | chr1_3:33938231-33938250 | None:intergenic | 55.0% | |
| GTGAGAGAGACTCGAATCGG+AGG | - | chr1_3:33938234-33938253 | None:intergenic | 55.0% | |
| GATTGGGCGAGTTGCGAAGA+CGG | - | chr1_3:33938274-33938293 | None:intergenic | 55.0% | |
| TGAGATCGCCGGTAGGGATT+GGG | - | chr1_3:33938290-33938309 | None:intergenic | 55.0% | |
| ATGAGATCGCCGGTAGGGAT+TGG | - | chr1_3:33938291-33938310 | None:intergenic | 55.0% | |
| TGTGGATGAGATCGCCGGTA+GGG | - | chr1_3:33938296-33938315 | None:intergenic | 55.0% | |
| AAGAGTAGCAGACGGGGTGT+GGG | - | chr1_3:33938356-33938375 | None:intergenic | 55.0% | |
| GTGGCAAGGGAGGGAACAAA+AGG | - | chr1_3:33938409-33938428 | None:intergenic | 55.0% | |
| ACTGCGTTTGTGGCAAGGGA+GGG | - | chr1_3:33938418-33938437 | None:intergenic | 55.0% | |
| CCTGACTGCGTTTGTGGCAA+GGG | - | chr1_3:33938422-33938441 | None:intergenic | 55.0% | |
| ACCTGACTGCGTTTGTGGCA+AGG | - | chr1_3:33938423-33938442 | None:intergenic | 55.0% | |
| TGCCACAAACGCAGTCAGGT+AGG | + | chr1_3:33938423-33938442 | Msa0115170:intron | 55.0% | |
| CACCTACCTGACTGCGTTTG+TGG | - | chr1_3:33938428-33938447 | None:intergenic | 55.0% | |
| AATTAGGCAGGGTCCGGGAA+GGG | - | chr1_3:33939159-33939178 | None:intergenic | 55.0% | |
| TTCCCGGACCCTGCCTAATT+GGG | + | chr1_3:33939159-33939178 | Msa0115170:intron | 55.0% | |
| AGCCCTAAAAAAGGGCAGCC+TGG | + | chr1_3:33939567-33939586 | Msa0115170:intron | 55.0% | |
| GCCCTAAAAAAGGGCAGCCT+GGG | + | chr1_3:33939568-33939587 | Msa0115170:intron | 55.0% | |
| !!! | CCCCAGGCTGCCCTTTTTTA+GGG | - | chr1_3:33939572-33939591 | None:intergenic | 55.0% |
| CCCTAAAAAAGGGCAGCCTG+GGG | + | chr1_3:33939569-33939588 | Msa0115170:intron | 55.0% | |
| CTCCACCAAACGCAACGTCT+AGG | + | chr1_3:33939600-33939619 | Msa0115170:intron | 55.0% | |
| CCCTTCCTAGACGTTGCGTT+TGG | - | chr1_3:33939608-33939627 | None:intergenic | 55.0% | |
| TCCCTTGCTGGTAAAGCGGT+TGG | + | chr1_3:33939877-33939896 | Msa0115170:CDS | 55.0% | |
| GCCAACCGCTTTACCAGCAA+GGG | - | chr1_3:33939881-33939900 | None:intergenic | 55.0% | |
| AGCCAACCGCTTTACCAGCA+AGG | - | chr1_3:33939882-33939901 | None:intergenic | 55.0% | |
| GCCCTCCGTGACATTGATGA+AGG | + | chr1_3:33941170-33941189 | Msa0115170:CDS | 55.0% | |
| CTAGATAGTGCAGCCACCCT+TGG | + | chr1_3:33941637-33941656 | Msa0115170:intron | 55.0% | |
| AGATAGTGCAGCCACCCTTG+GGG | + | chr1_3:33941639-33941658 | Msa0115170:intron | 55.0% | |
| ! | TTGGCAGCAAAGCACCCCAA+GGG | - | chr1_3:33941656-33941675 | None:intergenic | 55.0% |
| ! | ATTGGCAGCAAAGCACCCCA+AGG | - | chr1_3:33941657-33941676 | None:intergenic | 55.0% |
| CCGCCAAGTAAATGCCAGAG+TGG | - | chr1_3:33941941-33941960 | None:intergenic | 55.0% | |
| !! | GTCTCTCTCACCGACTCCGT+AGG | + | chr1_3:33938243-33938262 | Msa0115170:CDS | 60.0% |
| GCAACTCGCCCAATCCCTAC+CGG | + | chr1_3:33938279-33938298 | Msa0115170:CDS | 60.0% | |
| GTGTGGATGAGATCGCCGGT+AGG | - | chr1_3:33938297-33938316 | None:intergenic | 60.0% | |
| AGAGTAGCAGACGGGGTGTG+GGG | - | chr1_3:33938355-33938374 | None:intergenic | 60.0% | |
| CAAGAGTAGCAGACGGGGTG+TGG | - | chr1_3:33938357-33938376 | None:intergenic | 60.0% | |
| CGAGGCAAGAGTAGCAGACG+GGG | - | chr1_3:33938362-33938381 | None:intergenic | 60.0% | |
| GCGAGGCAAGAGTAGCAGAC+GGG | - | chr1_3:33938363-33938382 | None:intergenic | 60.0% | |
| GGCGAGGCAAGAGTAGCAGA+CGG | - | chr1_3:33938364-33938383 | None:intergenic | 60.0% | |
| AGAGGTTAGGGAGTCTGGCG+AGG | - | chr1_3:33938380-33938399 | None:intergenic | 60.0% | |
| GACTGCGTTTGTGGCAAGGG+AGG | - | chr1_3:33938419-33938438 | None:intergenic | 60.0% | |
| CCCTTGCCACAAACGCAGTC+AGG | + | chr1_3:33938419-33938438 | Msa0115170:CDS | 60.0% | |
| AGGGGTAACCTTGGCGCAAC+TGG | + | chr1_3:33939023-33939042 | Msa0115170:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | + | chr1_3:33939143-33939162 | Msa0115170:intron | 60.0% |
| ATTAGGCAGGGTCCGGGAAG+GGG | - | chr1_3:33939158-33939177 | None:intergenic | 60.0% | |
| CAATTAGGCAGGGTCCGGGA+AGG | - | chr1_3:33939160-33939179 | None:intergenic | 60.0% | |
| CTTCCCGGACCCTGCCTAAT+TGG | + | chr1_3:33939158-33939177 | Msa0115170:intron | 60.0% | |
| CTCCCAATTAGGCAGGGTCC+GGG | - | chr1_3:33939164-33939183 | None:intergenic | 60.0% | |
| GCTCCCAATTAGGCAGGGTC+CGG | - | chr1_3:33939165-33939184 | None:intergenic | 60.0% | |
| !!! | GCCCCAGGCTGCCCTTTTTT+AGG | - | chr1_3:33939573-33939592 | None:intergenic | 60.0% |
| ! | TGGTGGAGCTTTAGTGCCCC+AGG | - | chr1_3:33939588-33939607 | None:intergenic | 60.0% |
| CTAGGAAGGGGTCCCACCAT+TGG | + | chr1_3:33939618-33939637 | Msa0115170:intron | 60.0% | |
| !! | CGCATTGAGTTGGCTGGTGG+TGG | + | chr1_3:33940747-33940766 | Msa0115170:CDS | 60.0% |
| CCAGTCTGGACCGTGATGCT+CGG | + | chr1_3:33942895-33942914 | Msa0115170:CDS | 60.0% | |
| TGCGAAGACGGCGCGACCTA+CGG | - | chr1_3:33938262-33938281 | None:intergenic | 65.0% | |
| GGCGGTGTGGATGAGATCGC+CGG | - | chr1_3:33938301-33938320 | None:intergenic | 65.0% | |
| GGAAGGGGAAGGGTGGCAGA+CGG | - | chr1_3:33938331-33938350 | None:intergenic | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | - | chr1_3:33939145-33939164 | None:intergenic | 65.0% | |
| ! | GCAGCAAAGCACCCCAAGGG+TGG | - | chr1_3:33941653-33941672 | None:intergenic | 65.0% |
| CCGAGCATCACGGTCCAGAC+TGG | - | chr1_3:33942898-33942917 | None:intergenic | 65.0% | |
| GACGGCGCGACCTACGGAGT+CGG | - | chr1_3:33938256-33938275 | None:intergenic | 70.0% | |
| ! | AGGGTGGCAGACGGCGGGTT+CGG | - | chr1_3:33938322-33938341 | None:intergenic | 70.0% |
| AGGGGAAGGGTGGCAGACGG+CGG | - | chr1_3:33938328-33938347 | None:intergenic | 70.0% | |
| GGTGTGGGGCGGAAGGGGAA+GGG | - | chr1_3:33938341-33938360 | None:intergenic | 70.0% | |
| AGACGGGGTGTGGGGCGGAA+GGG | - | chr1_3:33938347-33938366 | None:intergenic | 70.0% | |
| GTAGCAGACGGGGTGTGGGG+CGG | - | chr1_3:33938352-33938371 | None:intergenic | 70.0% | |
| ! | AGACGGCGGGTTCGGCGGTG+TGG | - | chr1_3:33938314-33938333 | None:intergenic | 75.0% |
| ! | GTGGCAGACGGCGGGTTCGG+CGG | - | chr1_3:33938319-33938338 | None:intergenic | 75.0% |
| GGGGAAGGGTGGCAGACGGC+GGG | - | chr1_3:33938327-33938346 | None:intergenic | 75.0% | |
| GTGGGGCGGAAGGGGAAGGG+TGG | - | chr1_3:33938338-33938357 | None:intergenic | 75.0% | |
| GGGTGTGGGGCGGAAGGGGA+AGG | - | chr1_3:33938342-33938361 | None:intergenic | 75.0% | |
| GACGGGGTGTGGGGCGGAAG+GGG | - | chr1_3:33938346-33938365 | None:intergenic | 75.0% | |
| CAGACGGGGTGTGGGGCGGA+AGG | - | chr1_3:33938348-33938367 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 33938085 | 33943356 | 33938085 | ID=Msa0115170;Name=Msa0115170 |
| chr1_3 | mRNA | 33938085 | 33943356 | 33938085 | ID=Msa0115170-mRNA-1;Parent=Msa0115170;Name=Msa0115170-mRNA-1;_AED=0.12;_eAED=0.12;_QI=59|1|1|1|1|1|7|373|307 |
| chr1_3 | exon | 33938085 | 33938440 | 33938085 | ID=Msa0115170-mRNA-1:exon:10602;Parent=Msa0115170-mRNA-1 |
| chr1_3 | exon | 33938582 | 33938637 | 33938582 | ID=Msa0115170-mRNA-1:exon:10603;Parent=Msa0115170-mRNA-1 |
| chr1_3 | exon | 33939859 | 33939985 | 33939859 | ID=Msa0115170-mRNA-1:exon:10604;Parent=Msa0115170-mRNA-1 |
| chr1_3 | exon | 33940515 | 33940584 | 33940515 | ID=Msa0115170-mRNA-1:exon:10605;Parent=Msa0115170-mRNA-1 |
| chr1_3 | exon | 33940691 | 33940873 | 33940691 | ID=Msa0115170-mRNA-1:exon:10606;Parent=Msa0115170-mRNA-1 |
| chr1_3 | exon | 33941120 | 33941191 | 33941120 | ID=Msa0115170-mRNA-1:exon:10607;Parent=Msa0115170-mRNA-1 |
| chr1_3 | exon | 33942865 | 33943356 | 33942865 | ID=Msa0115170-mRNA-1:exon:10608;Parent=Msa0115170-mRNA-1 |
| chr1_3 | five_prime_UTR | 33938085 | 33938143 | 33938085 | ID=Msa0115170-mRNA-1:five_prime_utr;Parent=Msa0115170-mRNA-1 |
| chr1_3 | CDS | 33938144 | 33938440 | 33938144 | ID=Msa0115170-mRNA-1:cds;Parent=Msa0115170-mRNA-1 |
| chr1_3 | CDS | 33938582 | 33938637 | 33938582 | ID=Msa0115170-mRNA-1:cds;Parent=Msa0115170-mRNA-1 |
| chr1_3 | CDS | 33939859 | 33939985 | 33939859 | ID=Msa0115170-mRNA-1:cds;Parent=Msa0115170-mRNA-1 |
| chr1_3 | CDS | 33940515 | 33940584 | 33940515 | ID=Msa0115170-mRNA-1:cds;Parent=Msa0115170-mRNA-1 |
| chr1_3 | CDS | 33940691 | 33940873 | 33940691 | ID=Msa0115170-mRNA-1:cds;Parent=Msa0115170-mRNA-1 |
| chr1_3 | CDS | 33941120 | 33941191 | 33941120 | ID=Msa0115170-mRNA-1:cds;Parent=Msa0115170-mRNA-1 |
| chr1_3 | CDS | 33942865 | 33942983 | 33942865 | ID=Msa0115170-mRNA-1:cds;Parent=Msa0115170-mRNA-1 |
| chr1_3 | three_prime_UTR | 33942984 | 33943356 | 33942984 | ID=Msa0115170-mRNA-1:three_prime_utr;Parent=Msa0115170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
