Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115420 | RHN82688.1 | 72.487 | 189 | 48 | 2 | 157 | 343 | 1 | 187 | 4.17e-88 | 274 |
| Msa0115420 | RHN82688.1 | 78.571 | 154 | 20 | 2 | 1 | 141 | 1 | 154 | 6.01e-77 | 245 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115420 | A0A396K4F7 | 72.487 | 189 | 48 | 2 | 157 | 343 | 1 | 187 | 1.99e-88 | 274 |
| Msa0115420 | A0A396K4F7 | 78.571 | 154 | 20 | 2 | 1 | 141 | 1 | 154 | 2.87e-77 | 245 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0115420 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115420 | MtrunA17_Chr1g0212471 | 72.487 | 189 | 48 | 2 | 157 | 343 | 1 | 187 | 3.84e-92 | 274 |
| Msa0115420 | MtrunA17_Chr1g0212471 | 78.571 | 154 | 20 | 2 | 1 | 141 | 1 | 154 | 5.53e-81 | 245 |
| Msa0115420 | MtrunA17_Chr4g0022641 | 56.481 | 216 | 80 | 5 | 157 | 362 | 1 | 212 | 2.41e-74 | 235 |
| Msa0115420 | MtrunA17_Chr4g0022641 | 57.516 | 153 | 52 | 2 | 1 | 141 | 1 | 152 | 1.69e-53 | 181 |
| Msa0115420 | MtrunA17_Chr4g0059631 | 50.000 | 226 | 89 | 4 | 157 | 362 | 1 | 222 | 2.92e-62 | 200 |
| Msa0115420 | MtrunA17_Chr4g0059631 | 60.784 | 153 | 47 | 2 | 1 | 141 | 1 | 152 | 9.74e-55 | 180 |
| Msa0115420 | MtrunA17_Chr2g0303981 | 43.299 | 194 | 95 | 4 | 159 | 349 | 5 | 186 | 4.48e-45 | 153 |
| Msa0115420 | MtrunA17_Chr2g0303981 | 47.059 | 153 | 64 | 4 | 3 | 141 | 5 | 154 | 3.01e-39 | 138 |
| Msa0115420 | MtrunA17_Chr6g0457851 | 35.849 | 159 | 99 | 2 | 157 | 313 | 11 | 168 | 1.85e-30 | 119 |
| Msa0115420 | MtrunA17_Chr6g0457851 | 36.774 | 155 | 84 | 2 | 1 | 141 | 11 | 165 | 7.57e-30 | 117 |
| Msa0115420 | MtrunA17_Chr1g0212151 | 37.736 | 159 | 96 | 2 | 157 | 313 | 1 | 158 | 3.54e-30 | 118 |
| Msa0115420 | MtrunA17_Chr1g0212151 | 39.241 | 158 | 76 | 4 | 1 | 141 | 1 | 155 | 1.34e-28 | 114 |
| Msa0115420 | MtrunA17_Chr6g0449851 | 35.465 | 172 | 108 | 2 | 157 | 326 | 1 | 171 | 2.42e-29 | 115 |
| Msa0115420 | MtrunA17_Chr6g0449851 | 36.774 | 155 | 84 | 3 | 1 | 141 | 1 | 155 | 3.35e-27 | 109 |
| Msa0115420 | MtrunA17_Chr6g0449861 | 31.111 | 180 | 121 | 2 | 157 | 334 | 9 | 187 | 1.49e-26 | 108 |
| Msa0115420 | MtrunA17_Chr6g0449861 | 35.484 | 155 | 86 | 3 | 1 | 141 | 9 | 163 | 1.71e-24 | 102 |
| Msa0115420 | MtrunA17_Chr3g0107381 | 25.373 | 201 | 120 | 7 | 157 | 345 | 1 | 183 | 9.72e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115420 | AT5G55690.1 | 33.557 | 149 | 75 | 5 | 157 | 297 | 1 | 133 | 4.69e-13 | 69.3 |
| Msa0115420 | AT5G55690.1 | 34.694 | 147 | 82 | 5 | 1 | 136 | 1 | 144 | 1.17e-11 | 65.1 |
| Msa0115420 | AT5G55690.2 | 33.557 | 149 | 75 | 5 | 157 | 297 | 1 | 133 | 4.69e-13 | 69.3 |
| Msa0115420 | AT5G55690.2 | 34.694 | 147 | 82 | 5 | 1 | 136 | 1 | 144 | 1.17e-11 | 65.1 |
Find 58 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTCCATGTTAACCAAATT+TGG | 0.129467 | 1_3:+34293875 | None:intergenic |
| TCCAACCTGGCATCCAAATT+TGG | 0.186789 | 1_3:-34293888 | Msa0115420:CDS |
| CGGTCTTCTGGCCATGTTAT+TGG | 0.230397 | 1_3:+34294064 | None:intergenic |
| TTTACAATTGTATGGTCTTC+TGG | 0.253429 | 1_3:+34289815 | None:intergenic |
| TGGTCTTCTGGCCATGTTAT+TGG | 0.266179 | 1_3:+34289827 | None:intergenic |
| TCCAGTCTTGTTAGTGTATT+GGG | 0.267250 | 1_3:+34289910 | None:intergenic |
| TTTACCATTGTACGGTCTTC+TGG | 0.269305 | 1_3:+34294052 | None:intergenic |
| TCTTCCATCTTAATTAAATC+TGG | 0.297958 | 1_3:+34289644 | None:intergenic |
| CTCCAGTCTTGTTAGTGTAT+TGG | 0.305175 | 1_3:+34289909 | None:intergenic |
| GTCGTTGACATCAAATATCT+TGG | 0.367645 | 1_3:+34289754 | None:intergenic |
| GTCGTTGACATCAAATATCT+TGG | 0.367645 | 1_3:+34293985 | None:intergenic |
| ACCGGACTTGACAGTGTATT+GGG | 0.378449 | 1_3:+34294138 | None:intergenic |
| CACCGGACTTGACAGTGTAT+TGG | 0.384830 | 1_3:+34294137 | None:intergenic |
| GTGATTACAAGCTTGAATCT+TGG | 0.389216 | 1_3:+34293817 | None:intergenic |
| TCCATGTGTTGTTGCATTTG+AGG | 0.399480 | 1_3:+34289482 | None:intergenic |
| GCATCCAGATTTAATTAAGA+TGG | 0.417713 | 1_3:-34289648 | Msa0115420:CDS |
| GCATAGAGTTTACAATTGTA+TGG | 0.435000 | 1_3:+34289807 | None:intergenic |
| TGATGTGTTGTTGCATTTGA+GGG | 0.441139 | 1_3:+34293714 | None:intergenic |
| TGGAATTTGTAGAATGGGTC+GGG | 0.450805 | 1_3:-34290020 | Msa0115420:intron |
| GATGATATCTTTATGCACTT+TGG | 0.458740 | 1_3:+34293922 | None:intergenic |
| GTTAACCAAATTTGGATGCC+AGG | 0.463541 | 1_3:+34293883 | None:intergenic |
| ATTAAATCTGGATGCCAAGT+TGG | 0.464493 | 1_3:+34289656 | None:intergenic |
| CTTGGGTGTTTCAATCACTT+TGG | 0.465321 | 1_3:+34289772 | None:intergenic |
| GATGATAGCTTTATGCACTT+TGG | 0.469421 | 1_3:+34289691 | None:intergenic |
| ACCAAATTTGGATGCCAGGT+TGG | 0.474376 | 1_3:+34293887 | None:intergenic |
| ATCATGTGTTTAAATCAAGT+TGG | 0.487349 | 1_3:+34289396 | None:intergenic |
| TTGATGTGTTGTTGCATTTG+AGG | 0.494636 | 1_3:+34293713 | None:intergenic |
| TCCCAATACACTGTCAAGTC+CGG | 0.494797 | 1_3:-34294139 | Msa0115420:CDS |
| ACTTTCAAGCAAAGAAAAGC+TGG | 0.495334 | 1_3:-34294178 | Msa0115420:CDS |
| TTGGAATTTGTAGAATGGGT+CGG | 0.500741 | 1_3:-34290021 | Msa0115420:intron |
| TGATGAATTATGAGGCAAAC+CGG | 0.501798 | 1_3:+34289424 | None:intergenic |
| TGGTTTGTTGATGAATTATG+AGG | 0.510382 | 1_3:+34289416 | None:intergenic |
| TGAACGACACTAAGTGGGCT+TGG | 0.514956 | 1_3:+34289512 | None:intergenic |
| GCATCCAAATTTGGTTAACA+TGG | 0.520385 | 1_3:-34293879 | Msa0115420:CDS |
| TCCCAATACACTAACAAGAC+TGG | 0.520688 | 1_3:-34289911 | Msa0115420:CDS |
| CTTTGAAATTAAGAAAGCTA+AGG | 0.524267 | 1_3:-34293960 | Msa0115420:CDS |
| TTTGTTTGTAGAATGGGTCG+TGG | 0.527118 | 1_3:-34294247 | None:intergenic |
| TCGTTGACATCAAATATCTT+GGG | 0.530959 | 1_3:+34289755 | None:intergenic |
| TCGTTGACATCAAATATCTT+GGG | 0.530959 | 1_3:+34293986 | None:intergenic |
| ACCTCAAATGCAACAACACA+TGG | 0.539597 | 1_3:-34289483 | Msa0115420:CDS |
| ATGCTATGAACGACACTAAG+TGG | 0.542543 | 1_3:+34289506 | None:intergenic |
| GCATGGAGTTTACCATTGTA+CGG | 0.551323 | 1_3:+34294044 | None:intergenic |
| TCGATATCATGTATCCAACT+TGG | 0.557370 | 1_3:-34289670 | Msa0115420:CDS |
| ATTGTGTATGATGATGATGA+TGG | 0.576451 | 1_3:-34294100 | Msa0115420:CDS |
| GATTGCTGTTATAAATGCAA+AGG | 0.578620 | 1_3:-34289603 | Msa0115420:CDS |
| GATGATGGTGGTAATAATGC+GGG | 0.602556 | 1_3:-34289851 | Msa0115420:CDS |
| GGATGATATTAGTGAGACGA+TGG | 0.621537 | 1_3:-34289462 | Msa0115420:CDS |
| TAACATGTTGAAAAGTGAGA+TGG | 0.625075 | 1_3:-34289558 | Msa0115420:CDS |
| TGCTATGAACGACACTAAGT+GGG | 0.625498 | 1_3:+34289507 | None:intergenic |
| TGATGATGATGGCAATAATG+TGG | 0.630960 | 1_3:-34294089 | Msa0115420:CDS |
| CAGCACTTAAGTCTCTGAGC+TGG | 0.631241 | 1_3:+34293849 | None:intergenic |
| TCAATATCAAATATCCAACC+TGG | 0.635175 | 1_3:-34293901 | Msa0115420:CDS |
| ATGGATATGACTAATCATGC+CGG | 0.642387 | 1_3:-34289443 | Msa0115420:CDS |
| ATAATGTGGGACCAATAACA+TGG | 0.642393 | 1_3:-34294075 | Msa0115420:CDS |
| ATAATGCGGGACCAATAACA+TGG | 0.644832 | 1_3:-34289838 | Msa0115420:CDS |
| GATGATGATGGCAATAATGT+GGG | 0.668464 | 1_3:-34294088 | Msa0115420:CDS |
| TGATGATGGTGGTAATAATG+CGG | 0.705229 | 1_3:-34289852 | Msa0115420:CDS |
| ATGGCCAGAAGACCGTACAA+TGG | 0.724325 | 1_3:-34294056 | Msa0115420:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATATTTGTAATTTGTA+AGG | - | chr1_3:34290484-34290503 | Msa0115420:intron | 10.0% |
| !!! | ATAAGTGAATATTATTTTTT+AGG | - | chr1_3:34291962-34291981 | Msa0115420:intron | 10.0% |
| !!! | AGAAAATTTAATTTTTTTCA+AGG | - | chr1_3:34292180-34292199 | Msa0115420:intron | 10.0% |
| !!! | GAAAATTTAATTTTTTTCAA+GGG | - | chr1_3:34292181-34292200 | Msa0115420:intron | 10.0% |
| !! | AAAATATATTAGCAAAATTT+GGG | - | chr1_3:34292357-34292376 | Msa0115420:intron | 10.0% |
| !!! | ATTTCAAAAATGATATATTT+TGG | - | chr1_3:34292717-34292736 | Msa0115420:intron | 10.0% |
| !! | TTTAAATAAAGTCAAATATA+TGG | - | chr1_3:34292796-34292815 | Msa0115420:intron | 10.0% |
| !!! | CTAATTTTTTTATTTTTGTT+TGG | - | chr1_3:34293592-34293611 | Msa0115420:intron | 10.0% |
| !! | TATAAACAAACCATATTATT+GGG | + | chr1_3:34290308-34290327 | None:intergenic | 15.0% |
| !! | TTCAATCCTATAAAATTTAT+AGG | - | chr1_3:34290883-34290902 | Msa0115420:intron | 15.0% |
| !! | TCAATCCTATAAAATTTATA+GGG | - | chr1_3:34290884-34290903 | Msa0115420:intron | 15.0% |
| !! | ATATATGTTACAACAAAATA+TGG | - | chr1_3:34291070-34291089 | Msa0115420:intron | 15.0% |
| !! | AAACTACATTAATATTTACT+AGG | - | chr1_3:34291198-34291217 | Msa0115420:intron | 15.0% |
| !!! | TCATTACACTTTTTTTTTTT+AGG | - | chr1_3:34291369-34291388 | Msa0115420:intron | 15.0% |
| !!! | CATTACACTTTTTTTTTTTA+GGG | - | chr1_3:34291370-34291389 | Msa0115420:intron | 15.0% |
| !! | ATAATATTCACTTATAATGT+TGG | + | chr1_3:34291957-34291976 | None:intergenic | 15.0% |
| !!! | ATCTAATATATTTTAGTGTT+TGG | + | chr1_3:34292307-34292326 | None:intergenic | 15.0% |
| !!! | CAAATTTTGCTAATATATTT+TGG | + | chr1_3:34292358-34292377 | None:intergenic | 15.0% |
| !! | CAAAATATATTAGCAAAATT+TGG | - | chr1_3:34292356-34292375 | Msa0115420:intron | 15.0% |
| !! | AAATATATTAGCAAAATTTG+GGG | - | chr1_3:34292358-34292377 | Msa0115420:intron | 15.0% |
| !!! | TTGTTTCAAAAGATATATTT+TGG | - | chr1_3:34292772-34292791 | Msa0115420:intron | 15.0% |
| !! | GTCTATAAATAAAAATCAAA+CGG | - | chr1_3:34292883-34292902 | Msa0115420:intron | 15.0% |
| !! | TGATTTAAAAATATGTGTTT+GGG | + | chr1_3:34293239-34293258 | None:intergenic | 15.0% |
| !! | TTGATTTAAAAATATGTGTT+TGG | + | chr1_3:34293240-34293259 | None:intergenic | 15.0% |
| !!! | CTTTGAAAATAAGAAAAAAA+TGG | - | chr1_3:34293903-34293922 | Msa0115420:CDS | 15.0% |
| !! | ATCATATGTTTAAATCAAGT+TGG | + | chr1_3:34290008-34290027 | None:intergenic | 20.0% |
| !! | AACTTAAACTTAAAATCTAG+TGG | + | chr1_3:34290102-34290121 | None:intergenic | 20.0% |
| !!! | GTTTTGTTTAGCATTTAATA+TGG | - | chr1_3:34290119-34290138 | Msa0115420:intron | 20.0% |
| !! | GTATAAACAAACCATATTAT+TGG | + | chr1_3:34290309-34290328 | None:intergenic | 20.0% |
| !! | CTAATAAACAAAAATTAGTG+AGG | + | chr1_3:34290763-34290782 | None:intergenic | 20.0% |
| !!! | TTTTTGAAGGAAATTTTTCT+AGG | + | chr1_3:34290858-34290877 | None:intergenic | 20.0% |
| !!! | GGATTGAATTTTTTTTTTGA+AGG | + | chr1_3:34290871-34290890 | None:intergenic | 20.0% |
| !!! | GTTAACCCTATAAATTTTAT+AGG | + | chr1_3:34290892-34290911 | None:intergenic | 20.0% |
| !!! | AAAAGTGTAATGATAATAGA+AGG | + | chr1_3:34291362-34291381 | None:intergenic | 20.0% |
| !! | TTATCATTACACTTGTTTAA+AGG | - | chr1_3:34291396-34291415 | Msa0115420:intron | 20.0% |
| !! | TATGTATAATATATTCAACG+TGG | - | chr1_3:34291537-34291556 | Msa0115420:intron | 20.0% |
| !! | TTCAATAATTCTATGTCATT+TGG | - | chr1_3:34291684-34291703 | Msa0115420:intron | 20.0% |
| !! | AGAATATAGAAGTAAATCAA+TGG | + | chr1_3:34291756-34291775 | None:intergenic | 20.0% |
| !! | ATGCTTATTATACTTGTTTA+AGG | - | chr1_3:34292035-34292054 | Msa0115420:intron | 20.0% |
| !! | TCACAAAATATAGCAAAAAT+AGG | + | chr1_3:34292260-34292279 | None:intergenic | 20.0% |
| !!! | TAATATATTTTAGTGTTTGG+AGG | + | chr1_3:34292304-34292323 | None:intergenic | 20.0% |
| !!! | GAACACAATCTTAAATATTT+TGG | + | chr1_3:34292336-34292355 | None:intergenic | 20.0% |
| !! | TTAGTAGTGTTTATATAGTA+GGG | + | chr1_3:34292523-34292542 | None:intergenic | 20.0% |
| !! | ATTAGTAGTGTTTATATAGT+AGG | + | chr1_3:34292524-34292543 | None:intergenic | 20.0% |
| !!! | ATTCATATTGATTCAATGAA+TGG | - | chr1_3:34293101-34293120 | Msa0115420:intron | 20.0% |
| !!! | TTCATATTGATTCAATGAAT+GGG | - | chr1_3:34293102-34293121 | Msa0115420:intron | 20.0% |
| !!! | ATTCATATTGATTCAATGAA+TGG | - | chr1_3:34293101-34293120 | Msa0115420:intron | 20.0% |
| !!! | TTCATATTGATTCAATGAAT+GGG | - | chr1_3:34293102-34293121 | Msa0115420:intron | 20.0% |
| !! | TATGAAACAAAATCATAGAT+AGG | + | chr1_3:34293294-34293313 | None:intergenic | 20.0% |
| !!! | TTATTTGTTCATCATTTTCT+TGG | - | chr1_3:34293449-34293468 | Msa0115420:intron | 20.0% |
| !!! | CTTTGAAATTAAGAAAGCTA+AGG | - | chr1_3:34289672-34289691 | Msa0115420:CDS | 25.0% |
| !!! | TTTTTGTTTTGCTCTAGTAT+GGG | - | chr1_3:34290165-34290184 | Msa0115420:intron | 25.0% |
| ! | GTGGAAATTTAAAAAACCAA+GGG | + | chr1_3:34290286-34290305 | None:intergenic | 25.0% |
| ! | TAAATTTCCACCCAATAATA+TGG | - | chr1_3:34290295-34290314 | Msa0115420:intron | 25.0% |
| ! | TACTAGGAAAAGCAAAATTA+GGG | - | chr1_3:34290633-34290652 | Msa0115420:intron | 25.0% |
| ! | AAAATTCCTCACAAATTACT+TGG | - | chr1_3:34290679-34290698 | Msa0115420:intron | 25.0% |
| ! | ATTTAGTGACAAAATTAGAG+AGG | - | chr1_3:34290709-34290728 | Msa0115420:intron | 25.0% |
| ! | TTTAGTGACAAAATTAGAGA+GGG | - | chr1_3:34290710-34290729 | Msa0115420:intron | 25.0% |
| ! | GTGGCTTAGTTAATTAATTA+AGG | + | chr1_3:34290805-34290824 | None:intergenic | 25.0% |
| ! | TGTTTACTTTGATGAACATT+TGG | - | chr1_3:34291309-34291328 | Msa0115420:intron | 25.0% |
| ! | TTTGGCAAATTAAAGAAACA+CGG | + | chr1_3:34291608-34291627 | None:intergenic | 25.0% |
| !!! | TTCTTTAATTTGCCAAATAC+AGG | - | chr1_3:34291611-34291630 | Msa0115420:intron | 25.0% |
| !! | AGTATAGCACTTTTCTTTTA+CGG | - | chr1_3:34291708-34291727 | Msa0115420:intron | 25.0% |
| !! | GCAATGACAATAATTTTCAT+CGG | - | chr1_3:34291905-34291924 | Msa0115420:intron | 25.0% |
| ! | TCGGATCTAATATAATTACA+AGG | - | chr1_3:34291924-34291943 | Msa0115420:intron | 25.0% |
| ! | ATATAGCCTAAAGACATAAA+GGG | + | chr1_3:34292222-34292241 | None:intergenic | 25.0% |
| ! | AATATAGCCTAAAGACATAA+AGG | + | chr1_3:34292223-34292242 | None:intergenic | 25.0% |
| !!! | GTCTTTAGGCTATATTTTAA+TGG | - | chr1_3:34292227-34292246 | Msa0115420:intron | 25.0% |
| ! | ATGATTATGACCTCTATTAA+AGG | - | chr1_3:34292492-34292511 | Msa0115420:intron | 25.0% |
| ! | TAGTAGTGTTTATATAGTAG+GGG | + | chr1_3:34292522-34292541 | None:intergenic | 25.0% |
| ! | AAAAAGTGAAAGTCTCATAT+CGG | + | chr1_3:34292560-34292579 | None:intergenic | 25.0% |
| !!! | CTTTTTGAAACAATTTCTGT+TGG | + | chr1_3:34292652-34292671 | None:intergenic | 25.0% |
| !! | CAATTGGAGTTTCTAAAAAA+TGG | + | chr1_3:34292923-34292942 | None:intergenic | 25.0% |
| ! | AACAAGATTTCTACACTAAA+AGG | - | chr1_3:34293050-34293069 | Msa0115420:intron | 25.0% |
| !!! | ATGATTTTGTTTCATATCGT+AGG | - | chr1_3:34293298-34293317 | Msa0115420:intron | 25.0% |
| ! | AGTGATGTATTTATAGACAA+GGG | + | chr1_3:34293330-34293349 | None:intergenic | 25.0% |
| ! | TAGTGATGTATTTATAGACA+AGG | + | chr1_3:34293331-34293350 | None:intergenic | 25.0% |
| ! | TAGTGATGTATTTATAGACA+AGG | + | chr1_3:34293331-34293350 | None:intergenic | 25.0% |
| !! | TTCATATATCCTTTTATACG+TGG | - | chr1_3:34293531-34293550 | Msa0115420:intron | 25.0% |
| ! | TAATTCAATCCACGTATAAA+AGG | + | chr1_3:34293543-34293562 | None:intergenic | 25.0% |
| !! | TTTGTTTGGAATTTGTAGAA+TGG | - | chr1_3:34293606-34293625 | Msa0115420:intron | 25.0% |
| !! | TTGTTTGGAATTTGTAGAAT+GGG | - | chr1_3:34293607-34293626 | Msa0115420:intron | 25.0% |
| ! | TCTTCCATCTTAATTAAATC+TGG | + | chr1_3:34293991-34294010 | None:intergenic | 25.0% |
| ! | ATTGTGTATGATGATGATGA+TGG | - | chr1_3:34289532-34289551 | Msa0115420:CDS | 30.0% |
| TCGTTGACATCAAATATCTT+GGG | + | chr1_3:34289649-34289668 | None:intergenic | 30.0% | |
| GATGATATCTTTATGCACTT+TGG | + | chr1_3:34289713-34289732 | None:intergenic | 30.0% | |
| TCAATATCAAATATCCAACC+TGG | - | chr1_3:34289731-34289750 | Msa0115420:CDS | 30.0% | |
| !! | TGGTTTGTTGATGAATTATG+AGG | + | chr1_3:34289988-34290007 | None:intergenic | 30.0% |
| TTAAACATATGATTACCCGT+AGG | - | chr1_3:34290015-34290034 | Msa0115420:intron | 30.0% | |
| ! | AACTATATATGAAGCACCTA+CGG | + | chr1_3:34290034-34290053 | None:intergenic | 30.0% |
| !!! | CTTTTTGTTTTGCTCTAGTA+TGG | - | chr1_3:34290164-34290183 | Msa0115420:intron | 30.0% |
| GGTGGAAATTTAAAAAACCA+AGG | + | chr1_3:34290287-34290306 | None:intergenic | 30.0% | |
| AAACAAACCATATTATTGGG+TGG | + | chr1_3:34290305-34290324 | None:intergenic | 30.0% | |
| TAACTAAATGTAAGAACCCA+GGG | - | chr1_3:34290586-34290605 | Msa0115420:intron | 30.0% | |
| !! | AATTTTGCTTTTCCTAGTAG+TGG | + | chr1_3:34290632-34290651 | None:intergenic | 30.0% |
| CTACTAGGAAAAGCAAAATT+AGG | - | chr1_3:34290632-34290651 | Msa0115420:intron | 30.0% | |
| GAATTTAACAAGCAGCTAAA+TGG | + | chr1_3:34290832-34290851 | None:intergenic | 30.0% | |
| !!! | GGTTTTGCTATTGAATTTGA+AGG | + | chr1_3:34291341-34291360 | None:intergenic | 30.0% |
| TTGGCAAATTAAAGAAACAC+GGG | + | chr1_3:34291607-34291626 | None:intergenic | 30.0% | |
| ACATGCAATGTAAGAAATGT+TGG | + | chr1_3:34291637-34291656 | None:intergenic | 30.0% | |
| ! | CACTTTTCTTTTACGGAATT+TGG | - | chr1_3:34291715-34291734 | Msa0115420:intron | 30.0% |
| TATATTCTCCAACTCAAGAT+CGG | - | chr1_3:34291866-34291885 | Msa0115420:intron | 30.0% | |
| GTCATTGAAAAAAGATCCAA+TGG | - | chr1_3:34292128-34292147 | Msa0115420:intron | 30.0% | |
| TCAGTTAAAACAGAATTTCG+AGG | - | chr1_3:34292154-34292173 | Msa0115420:intron | 30.0% | |
| AATTTCTGTTGGAACATATG+TGG | + | chr1_3:34292641-34292660 | None:intergenic | 30.0% | |
| ! | GACTATGACTTCTTTTCAAT+TGG | + | chr1_3:34292939-34292958 | None:intergenic | 30.0% |
| ATTTGTCATAAATAAGCGAG+AGG | + | chr1_3:34293083-34293102 | None:intergenic | 30.0% | |
| ! | AAATATGTGTTTGGGATGAA+AGG | + | chr1_3:34293231-34293250 | None:intergenic | 30.0% |
| GTATTTATAGACAAGGGTTA+TGG | + | chr1_3:34293324-34293343 | None:intergenic | 30.0% | |
| ! | AGCAATGTGTTTTACCTTAA+CGG | + | chr1_3:34293395-34293414 | None:intergenic | 30.0% |
| GCAAAAATACTTTCAAGCAA+AGG | - | chr1_3:34293674-34293693 | Msa0115420:intron | 30.0% | |
| ACTTTCAAGCAAAGGAAAAA+TGG | - | chr1_3:34293682-34293701 | Msa0115420:intron | 30.0% | |
| ! | TATGATGATGATGATGATGA+TGG | - | chr1_3:34293766-34293785 | Msa0115420:intron | 30.0% |
| TTTACAATTGTATGGTCTTC+TGG | + | chr1_3:34293820-34293839 | None:intergenic | 30.0% | |
| GCATAGAGTTTACAATTGTA+TGG | + | chr1_3:34293828-34293847 | None:intergenic | 30.0% | |
| TCGTTGACATCAAATATCTT+GGG | + | chr1_3:34289649-34289668 | None:intergenic | 30.0% | |
| GCATCCAGATTTAATTAAGA+TGG | - | chr1_3:34293984-34294003 | Msa0115420:CDS | 30.0% | |
| ! | GATTGCTGTTATAAATGCAA+AGG | - | chr1_3:34294029-34294048 | Msa0115420:intron | 30.0% |
| TAACATGTTGAAAAGTGAGA+TGG | - | chr1_3:34294074-34294093 | Msa0115420:CDS | 30.0% | |
| !! | TGGTTTGTTGATGAATTATG+AGG | + | chr1_3:34289988-34290007 | None:intergenic | 30.0% |
| ACTTTCAAGCAAAGAAAAGC+TGG | - | chr1_3:34289454-34289473 | Msa0115420:CDS | 35.0% | |
| ! | AATCAAACAAGCTTTTGCAC+CGG | + | chr1_3:34289515-34289534 | None:intergenic | 35.0% |
| !! | TGATGATGATGGCAATAATG+TGG | - | chr1_3:34289543-34289562 | Msa0115420:CDS | 35.0% |
| !! | GATGATGATGGCAATAATGT+GGG | - | chr1_3:34289544-34289563 | Msa0115420:CDS | 35.0% |
| ATAATGTGGGACCAATAACA+TGG | - | chr1_3:34289557-34289576 | Msa0115420:CDS | 35.0% | |
| GTCGTTGACATCAAATATCT+TGG | + | chr1_3:34289650-34289669 | None:intergenic | 35.0% | |
| GCATCCAAATTTGGTTAACA+TGG | - | chr1_3:34289753-34289772 | Msa0115420:CDS | 35.0% | |
| GCTTCCATGTTAACCAAATT+TGG | + | chr1_3:34289760-34289779 | None:intergenic | 35.0% | |
| GTGATTACAAGCTTGAATCT+TGG | + | chr1_3:34289818-34289837 | None:intergenic | 35.0% | |
| CAACATGTTGAAAAGTGAGA+TGG | - | chr1_3:34289843-34289862 | Msa0115420:CDS | 35.0% | |
| ! | TGATGTGTTGTTGCATTTGA+GGG | + | chr1_3:34289921-34289940 | None:intergenic | 35.0% |
| ! | TTGATGTGTTGTTGCATTTG+AGG | + | chr1_3:34289922-34289941 | None:intergenic | 35.0% |
| CATCAATCATGTTAGTGAGA+TGG | - | chr1_3:34289936-34289955 | Msa0115420:CDS | 35.0% | |
| ! | ACTATATATGAAGCACCTAC+GGG | + | chr1_3:34290033-34290052 | None:intergenic | 35.0% |
| TTTAAAAAACCAAGGGATGC+AGG | + | chr1_3:34290279-34290298 | None:intergenic | 35.0% | |
| AAGTTTGATGTGAGAGTCTT+AGG | + | chr1_3:34290365-34290384 | None:intergenic | 35.0% | |
| GTCAACATGTAAAAGCAACA+AGG | + | chr1_3:34290451-34290470 | None:intergenic | 35.0% | |
| GTAACTAAATGTAAGAACCC+AGG | - | chr1_3:34290585-34290604 | Msa0115420:intron | 35.0% | |
| TAGGAAAAGCAAAATTAGGG+AGG | - | chr1_3:34290636-34290655 | Msa0115420:intron | 35.0% | |
| TTAGGGAGGAAAATTAGTGA+CGG | - | chr1_3:34290650-34290669 | Msa0115420:intron | 35.0% | |
| CTAATCCTACTAACACTACT+TGG | - | chr1_3:34291495-34291514 | Msa0115420:intron | 35.0% | |
| TGGCAAATTAAAGAAACACG+GGG | + | chr1_3:34291606-34291625 | None:intergenic | 35.0% | |
| ! | AAGAAATGTTGGCCTGTATT+TGG | + | chr1_3:34291626-34291645 | None:intergenic | 35.0% |
| TGGAGAATATATGCACAACT+TGG | + | chr1_3:34291857-34291876 | None:intergenic | 35.0% | |
| !!! | CTGTTTTAACTGACAACCAT+TGG | + | chr1_3:34292147-34292166 | None:intergenic | 35.0% |
| AGATCACCCTTTATGTCTTT+AGG | - | chr1_3:34292213-34292232 | Msa0115420:intron | 35.0% | |
| CTAGTACAAGTTATCAGAGA+AGG | - | chr1_3:34292965-34292984 | Msa0115420:intron | 35.0% | |
| TTTGTTCGTGTAGACTAAGT+AGG | - | chr1_3:34292988-34293007 | Msa0115420:intron | 35.0% | |
| ! | AATGTGTTTTACCTTAACGG+TGG | + | chr1_3:34293392-34293411 | None:intergenic | 35.0% |
| !!! | TTGTTTTTACCGTGTTCTAG+TGG | - | chr1_3:34293474-34293493 | Msa0115420:intron | 35.0% |
| AAGAAACAACCACTAGAACA+CGG | + | chr1_3:34293486-34293505 | None:intergenic | 35.0% | |
| TTGGAATTTGTAGAATGGGT+CGG | - | chr1_3:34293611-34293630 | Msa0115420:intron | 35.0% | |
| !! | TCCAGTCTTGTTAGTGTATT+GGG | + | chr1_3:34293725-34293744 | None:intergenic | 35.0% |
| !! | TGATGATGGTGGTAATAATG+CGG | - | chr1_3:34293780-34293799 | Msa0115420:intron | 35.0% |
| GTCGTTGACATCAAATATCT+TGG | + | chr1_3:34289650-34289669 | None:intergenic | 35.0% | |
| !! | GATGATAGCTTTATGCACTT+TGG | + | chr1_3:34293944-34293963 | None:intergenic | 35.0% |
| TCGATATCATGTATCCAACT+TGG | - | chr1_3:34293962-34293981 | Msa0115420:CDS | 35.0% | |
| ATTAAATCTGGATGCCAAGT+TGG | + | chr1_3:34293979-34293998 | None:intergenic | 35.0% | |
| ATGGATATGACTAATCATGC+CGG | - | chr1_3:34294189-34294208 | Msa0115420:CDS | 35.0% | |
| TGATGAATTATGAGGCAAAC+CGG | + | chr1_3:34294211-34294230 | None:intergenic | 35.0% | |
| TTTACCATTGTACGGTCTTC+TGG | + | chr1_3:34289583-34289602 | None:intergenic | 40.0% | |
| GCATGGAGTTTACCATTGTA+CGG | + | chr1_3:34289591-34289610 | None:intergenic | 40.0% | |
| ATGCTCATACTCTTGAAGCA+TGG | + | chr1_3:34289608-34289627 | None:intergenic | 40.0% | |
| GTTAACCAAATTTGGATGCC+AGG | + | chr1_3:34289752-34289771 | None:intergenic | 40.0% | |
| CATGTTGAAAAGTGAGATGG+TGG | - | chr1_3:34289846-34289865 | Msa0115420:CDS | 40.0% | |
| TGCTATGTATGACACTGAGT+GGG | + | chr1_3:34289897-34289916 | None:intergenic | 40.0% | |
| ATGCTATGTATGACACTGAG+TGG | + | chr1_3:34289898-34289917 | None:intergenic | 40.0% | |
| CAATCATGTTAGTGAGATGG+TGG | - | chr1_3:34289939-34289958 | Msa0115420:CDS | 40.0% | |
| ATGAGGCAAAACAGCATGAT+TGG | + | chr1_3:34289971-34289990 | None:intergenic | 40.0% | |
| ! | TTTTGTTCGACTATGTCCAG+TGG | - | chr1_3:34290225-34290244 | Msa0115420:intron | 40.0% |
| AGGTGCATGAGTACAATTTC+AGG | + | chr1_3:34290342-34290361 | None:intergenic | 40.0% | |
| TTTGATGTGAGAGTCTTAGG+AGG | + | chr1_3:34290362-34290381 | None:intergenic | 40.0% | |
| !!! | GTCGACACACTCTACTTTTT+AGG | - | chr1_3:34290386-34290405 | Msa0115420:intron | 40.0% |
| TAGTAGTGGTTATTCGAGTC+TGG | + | chr1_3:34290618-34290637 | None:intergenic | 40.0% | |
| AGACTCGAATAACCACTACT+AGG | - | chr1_3:34290617-34290636 | Msa0115420:intron | 40.0% | |
| ! | CAAGCAGCTAAATGGTAATG+TGG | + | chr1_3:34290824-34290843 | None:intergenic | 40.0% |
| ! | AATTTTGCATCCCCTAAACC+AGG | - | chr1_3:34291144-34291163 | Msa0115420:intron | 40.0% |
| ! | ATTTTGCATCCCCTAAACCA+GGG | - | chr1_3:34291145-34291164 | Msa0115420:intron | 40.0% |
| GTTTCTCTAGACATAGTCAG+TGG | + | chr1_3:34291182-34291201 | None:intergenic | 40.0% | |
| TGGATCCAAGTAGTGTTAGT+AGG | + | chr1_3:34291503-34291522 | None:intergenic | 40.0% | |
| TAACACTACTTGGATCCACA+GGG | - | chr1_3:34291505-34291524 | Msa0115420:intron | 40.0% | |
| TACATAGTAGAAACTCCCTG+TGG | + | chr1_3:34291523-34291542 | None:intergenic | 40.0% | |
| TATTGTCATTGCACTATCGC+CGG | + | chr1_3:34291897-34291916 | None:intergenic | 40.0% | |
| TTCGATTGCTGATGATCCAA+CGG | - | chr1_3:34292071-34292090 | Msa0115420:intron | 40.0% | |
| !!! | ATGTTTTAACCGTCAACCGT+TGG | + | chr1_3:34292090-34292109 | None:intergenic | 40.0% |
| TAGTCAAACTACCACCGTTA+AGG | - | chr1_3:34293378-34293397 | Msa0115420:intron | 40.0% | |
| TGGAATTTGTAGAATGGGTC+GGG | - | chr1_3:34293612-34293631 | Msa0115420:intron | 40.0% | |
| TCCCAATACACTAACAAGAC+TGG | - | chr1_3:34293721-34293740 | Msa0115420:CDS | 40.0% | |
| !! | CTCCAGTCTTGTTAGTGTAT+TGG | + | chr1_3:34293726-34293745 | None:intergenic | 40.0% |
| !! | GATGATGATGATGATGATGG+TGG | - | chr1_3:34293769-34293788 | Msa0115420:intron | 40.0% |
| !! | GATGATGGTGGTAATAATGC+GGG | - | chr1_3:34293781-34293800 | Msa0115420:intron | 40.0% |
| ATAATGCGGGACCAATAACA+TGG | - | chr1_3:34293794-34293813 | Msa0115420:intron | 40.0% | |
| CTTGGGTGTTTCAATCACTT+TGG | + | chr1_3:34293863-34293882 | None:intergenic | 40.0% | |
| TGCTATGAACGACACTAAGT+GGG | + | chr1_3:34294128-34294147 | None:intergenic | 40.0% | |
| ATGCTATGAACGACACTAAG+TGG | + | chr1_3:34294129-34294148 | None:intergenic | 40.0% | |
| ACCTCAAATGCAACAACACA+TGG | - | chr1_3:34294149-34294168 | Msa0115420:CDS | 40.0% | |
| ! | TCCATGTGTTGTTGCATTTG+AGG | + | chr1_3:34294153-34294172 | None:intergenic | 40.0% |
| GGATGATATTAGTGAGACGA+TGG | - | chr1_3:34294170-34294189 | Msa0115420:CDS | 40.0% | |
| TCCCAATACACTGTCAAGTC+CGG | - | chr1_3:34289493-34289512 | Msa0115420:CDS | 45.0% | |
| ACCGGACTTGACAGTGTATT+GGG | + | chr1_3:34289497-34289516 | None:intergenic | 45.0% | |
| TCCAACCTGGCATCCAAATT+TGG | - | chr1_3:34289744-34289763 | Msa0115420:CDS | 45.0% | |
| ACCAAATTTGGATGCCAGGT+TGG | + | chr1_3:34289748-34289767 | None:intergenic | 45.0% | |
| TCGAGTCTGGTTAATTCCCT+GGG | + | chr1_3:34290605-34290624 | None:intergenic | 45.0% | |
| TTCGAGTCTGGTTAATTCCC+TGG | + | chr1_3:34290606-34290625 | None:intergenic | 45.0% | |
| ! | CTGCGACCAAGTAATTTGTG+AGG | + | chr1_3:34290688-34290707 | None:intergenic | 45.0% |
| CTAACACTACTTGGATCCAC+AGG | - | chr1_3:34291504-34291523 | Msa0115420:intron | 45.0% | |
| !! | ATCAGAGTGTGTCGACTATG+TGG | - | chr1_3:34291577-34291596 | Msa0115420:intron | 45.0% |
| TGCACAACTTGGCTATTCCA+GGG | + | chr1_3:34291846-34291865 | None:intergenic | 45.0% | |
| ATGCACAACTTGGCTATTCC+AGG | + | chr1_3:34291847-34291866 | None:intergenic | 45.0% | |
| CAACTCAAGATCGGAGTAAC+CGG | - | chr1_3:34291875-34291894 | Msa0115420:intron | 45.0% | |
| ! | TAGGGGCGTACCTTTAATAG+AGG | + | chr1_3:34292505-34292524 | None:intergenic | 45.0% |
| TGGTCTTCTGGCCATGTTAT+TGG | + | chr1_3:34293808-34293827 | None:intergenic | 45.0% | |
| !!! | TTGATATATATTTTATTATT+TGG | + | chr1_3:34292437-34292456 | None:intergenic | 5.0% |
| !! | TTTAAATAAAATCAAATATA+TGG | - | chr1_3:34292684-34292703 | Msa0115420:intron | 5.0% |
| !!! | TTTATTTAAAATTATCTAAA+AGG | - | chr1_3:34292847-34292866 | Msa0115420:intron | 5.0% |
| CACCGGACTTGACAGTGTAT+TGG | + | chr1_3:34289498-34289517 | None:intergenic | 50.0% | |
| CGGTCTTCTGGCCATGTTAT+TGG | + | chr1_3:34289571-34289590 | None:intergenic | 50.0% | |
| ATGGCCAGAAGACCGTACAA+TGG | - | chr1_3:34289576-34289595 | Msa0115420:CDS | 50.0% | |
| CAGCACTTAAGTCTCTGAGC+TGG | + | chr1_3:34289786-34289805 | None:intergenic | 50.0% | |
| ! | TGTATGACACTGAGTGGGCT+TGG | + | chr1_3:34289892-34289911 | None:intergenic | 50.0% |
| TGTTCGACTATGTCCAGTGG+CGG | - | chr1_3:34290228-34290247 | Msa0115420:intron | 50.0% | |
| CGGTTACTCCGATCTTGAGT+TGG | + | chr1_3:34291877-34291896 | None:intergenic | 50.0% | |
| GCTGATGATCCAACGGTTGA+CGG | - | chr1_3:34292078-34292097 | Msa0115420:intron | 50.0% | |
| ! | TGAACGACACTAAGTGGGCT+TGG | + | chr1_3:34294123-34294142 | None:intergenic | 50.0% |
| TGCATCCCCTCACACACAAG+TGG | + | chr1_3:34290256-34290275 | None:intergenic | 55.0% | |
| TAGCCAGGACCCTGGTTTAG+GGG | + | chr1_3:34291157-34291176 | None:intergenic | 55.0% | |
| GTAGCCAGGACCCTGGTTTA+GGG | + | chr1_3:34291158-34291177 | None:intergenic | 55.0% | |
| ACATAGTCAGTGGCGTAGCC+AGG | + | chr1_3:34291172-34291191 | None:intergenic | 55.0% | |
| TGTGTGCGCGCGCATCAAAT+TGG | - | chr1_3:34291819-34291838 | Msa0115420:intron | 55.0% | |
| GCGGAGCCACTTGTGTGTGA+GGG | - | chr1_3:34290247-34290266 | Msa0115420:intron | 60.0% | |
| CGGAGCCACTTGTGTGTGAG+GGG | - | chr1_3:34290248-34290267 | Msa0115420:intron | 60.0% | |
| CATCCCCTAAACCAGGGTCC+TGG | - | chr1_3:34291151-34291170 | Msa0115420:intron | 60.0% | |
| CGTAGCCAGGACCCTGGTTT+AGG | + | chr1_3:34291159-34291178 | None:intergenic | 60.0% | |
| GCGCGCATCAAATTGGTCCC+TGG | - | chr1_3:34291826-34291845 | Msa0115420:intron | 60.0% | |
| CACACAAGTGGCTCCGCCAC+TGG | + | chr1_3:34290244-34290263 | None:intergenic | 65.0% | |
| GGCGGAGCCACTTGTGTGTG+AGG | - | chr1_3:34290246-34290265 | Msa0115420:intron | 65.0% | |
| GGGGATGCACCTGCATCCCT+TGG | - | chr1_3:34290267-34290286 | Msa0115420:intron | 65.0% | |
| CAGTGGCGTAGCCAGGACCC+TGG | + | chr1_3:34291165-34291184 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 34289397 | 34294257 | 34289397 | ID=Msa0115420;Name=Msa0115420 |
| chr1_3 | mRNA | 34289397 | 34294257 | 34289397 | ID=Msa0115420-mRNA-1;Parent=Msa0115420;Name=Msa0115420-mRNA-1;_AED=0.07;_eAED=0.10;_QI=0|0|0|1|0|0|4|0|366 |
| chr1_3 | exon | 34294057 | 34294257 | 34294057 | ID=Msa0115420-mRNA-1:exon:10876;Parent=Msa0115420-mRNA-1 |
| chr1_3 | exon | 34293798 | 34294020 | 34293798 | ID=Msa0115420-mRNA-1:exon:10875;Parent=Msa0115420-mRNA-1 |
| chr1_3 | exon | 34293709 | 34293751 | 34293709 | ID=Msa0115420-mRNA-1:exon:10874;Parent=Msa0115420-mRNA-1 |
| chr1_3 | exon | 34289397 | 34290030 | 34289397 | ID=Msa0115420-mRNA-1:exon:10873;Parent=Msa0115420-mRNA-1 |
| chr1_3 | CDS | 34294057 | 34294257 | 34294057 | ID=Msa0115420-mRNA-1:cds;Parent=Msa0115420-mRNA-1 |
| chr1_3 | CDS | 34293798 | 34294020 | 34293798 | ID=Msa0115420-mRNA-1:cds;Parent=Msa0115420-mRNA-1 |
| chr1_3 | CDS | 34293709 | 34293751 | 34293709 | ID=Msa0115420-mRNA-1:cds;Parent=Msa0115420-mRNA-1 |
| chr1_3 | CDS | 34289397 | 34290030 | 34289397 | ID=Msa0115420-mRNA-1:cds;Parent=Msa0115420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
