Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115480 | XP_013470410.1 | 98.544 | 206 | 3 | 0 | 235 | 440 | 5 | 210 | 3.89e-136 | 404 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115480 | sp|Q9SKB6|MRL7L_ARATH | 64.964 | 137 | 45 | 2 | 93 | 226 | 109 | 245 | 2.58e-47 | 171 |
| Msa0115480 | sp|Q9SKB6|MRL7L_ARATH | 76.000 | 100 | 24 | 0 | 441 | 540 | 244 | 343 | 7.15e-45 | 165 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115480 | A0A072VSQ8 | 98.544 | 206 | 3 | 0 | 235 | 440 | 5 | 210 | 1.86e-136 | 404 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0115480 | TR | HMG |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115480 | MtrunA17_Chr1g0212341 | 98.544 | 206 | 3 | 0 | 235 | 440 | 5 | 210 | 3.58e-140 | 404 |
| Msa0115480 | MtrunA17_Chr1g0212371 | 83.475 | 236 | 23 | 3 | 1 | 226 | 1 | 230 | 3.51e-113 | 340 |
| Msa0115480 | MtrunA17_Chr1g0212371 | 99.074 | 108 | 1 | 0 | 441 | 548 | 229 | 336 | 6.09e-70 | 228 |
| Msa0115480 | MtrunA17_Chr8g0342651 | 77.083 | 96 | 22 | 0 | 277 | 372 | 131 | 226 | 1.13e-39 | 144 |
| Msa0115480 | MtrunA17_Chr3g0143991 | 61.798 | 89 | 34 | 0 | 319 | 407 | 32 | 120 | 6.22e-28 | 109 |
| Msa0115480 | MtrunA17_Chr5g0407011 | 49.091 | 110 | 50 | 2 | 316 | 419 | 16 | 125 | 1.11e-25 | 102 |
| Msa0115480 | MtrunA17_Chr8g0370431 | 45.872 | 109 | 54 | 1 | 316 | 419 | 16 | 124 | 3.58e-24 | 98.6 |
| Msa0115480 | MtrunA17_Chr7g0242251 | 60.811 | 74 | 29 | 0 | 328 | 401 | 47 | 120 | 2.83e-23 | 97.1 |
| Msa0115480 | MtrunA17_Chr4g0052011 | 50.000 | 74 | 37 | 0 | 328 | 401 | 60 | 133 | 2.03e-18 | 82.4 |
| Msa0115480 | MtrunA17_Chr8g0378941 | 42.697 | 89 | 48 | 2 | 443 | 529 | 256 | 343 | 1.33e-15 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115480 | AT2G31840.1 | 64.964 | 137 | 45 | 2 | 93 | 226 | 109 | 245 | 2.62e-48 | 171 |
| Msa0115480 | AT2G31840.1 | 76.000 | 100 | 24 | 0 | 441 | 540 | 244 | 343 | 7.27e-46 | 165 |
| Msa0115480 | AT2G31840.2 | 64.964 | 137 | 45 | 2 | 93 | 226 | 109 | 245 | 2.62e-48 | 171 |
| Msa0115480 | AT2G31840.2 | 76.000 | 100 | 24 | 0 | 441 | 540 | 244 | 343 | 7.27e-46 | 165 |
| Msa0115480 | AT5G23420.1 | 54.167 | 168 | 67 | 5 | 237 | 397 | 15 | 179 | 6.30e-41 | 148 |
| Msa0115480 | AT4G35570.1 | 50.000 | 102 | 50 | 1 | 323 | 424 | 25 | 125 | 1.11e-25 | 102 |
| Msa0115480 | AT4G35570.2 | 50.000 | 102 | 50 | 1 | 323 | 424 | 25 | 125 | 1.11e-25 | 102 |
| Msa0115480 | AT2G17560.3 | 47.170 | 106 | 55 | 1 | 323 | 427 | 25 | 130 | 7.77e-24 | 97.8 |
| Msa0115480 | AT3G51880.2 | 47.826 | 115 | 54 | 2 | 327 | 440 | 48 | 157 | 1.67e-23 | 98.2 |
| Msa0115480 | AT1G20693.2 | 53.535 | 99 | 42 | 3 | 320 | 415 | 25 | 122 | 2.96e-23 | 96.3 |
| Msa0115480 | AT1G20693.3 | 53.535 | 99 | 42 | 3 | 320 | 415 | 25 | 122 | 3.01e-23 | 96.3 |
| Msa0115480 | AT2G17560.2 | 46.602 | 103 | 54 | 1 | 323 | 424 | 25 | 127 | 8.23e-23 | 94.7 |
| Msa0115480 | AT2G17560.1 | 46.602 | 103 | 54 | 1 | 323 | 424 | 25 | 127 | 8.23e-23 | 94.7 |
| Msa0115480 | AT3G51880.4 | 51.087 | 92 | 40 | 1 | 327 | 418 | 48 | 134 | 1.77e-22 | 94.7 |
| Msa0115480 | AT1G20693.1 | 50.495 | 101 | 43 | 2 | 320 | 419 | 25 | 119 | 1.96e-22 | 94.0 |
| Msa0115480 | AT3G51880.5 | 52.381 | 84 | 40 | 0 | 327 | 410 | 48 | 131 | 2.41e-22 | 94.7 |
| Msa0115480 | AT3G51880.1 | 52.381 | 84 | 40 | 0 | 327 | 410 | 48 | 131 | 2.41e-22 | 94.7 |
| Msa0115480 | AT3G51880.3 | 52.381 | 84 | 40 | 0 | 327 | 410 | 48 | 131 | 2.41e-22 | 94.7 |
| Msa0115480 | AT1G20696.5 | 55.814 | 86 | 37 | 1 | 316 | 401 | 20 | 104 | 3.29e-22 | 93.2 |
| Msa0115480 | AT1G20696.2 | 55.952 | 84 | 36 | 1 | 318 | 401 | 22 | 104 | 3.63e-22 | 93.2 |
| Msa0115480 | AT1G20696.1 | 50.962 | 104 | 44 | 2 | 316 | 419 | 20 | 116 | 9.93e-22 | 92.0 |
| Msa0115480 | AT2G34450.4 | 48.571 | 70 | 36 | 0 | 332 | 401 | 63 | 132 | 5.71e-17 | 78.6 |
| Msa0115480 | AT2G34450.3 | 48.571 | 70 | 36 | 0 | 332 | 401 | 63 | 132 | 5.71e-17 | 78.6 |
| Msa0115480 | AT2G34450.1 | 48.571 | 70 | 36 | 0 | 332 | 401 | 63 | 132 | 5.71e-17 | 78.6 |
| Msa0115480 | AT4G28590.1 | 44.944 | 89 | 46 | 2 | 443 | 529 | 235 | 322 | 6.35e-17 | 82.8 |
| Msa0115480 | AT2G34450.2 | 49.296 | 71 | 35 | 1 | 332 | 401 | 63 | 133 | 1.59e-15 | 74.7 |
| Msa0115480 | AT5G23420.2 | 61.667 | 60 | 22 | 1 | 237 | 295 | 15 | 74 | 3.63e-15 | 73.6 |
| Msa0115480 | AT1G20696.3 | 46.154 | 78 | 39 | 2 | 340 | 415 | 1 | 77 | 1.71e-11 | 61.2 |
| Msa0115480 | AT1G20696.4 | 42.500 | 80 | 40 | 1 | 340 | 419 | 1 | 74 | 9.92e-11 | 59.3 |
Find 118 sgRNAs with CRISPR-Local
Find 464 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTCAAACCCCACTTTAC+AGG | 0.236764 | 1_3:+34352193 | Msa0115480:CDS |
| TTAGGAGAAGAAGCCTTATT+TGG | 0.238707 | 1_3:+34356025 | Msa0115480:intron |
| CTCTTAACATCCTTTGAATC+AGG | 0.239936 | 1_3:-34355753 | None:intergenic |
| TCAACAACCTTATCCAAATA+AGG | 0.266781 | 1_3:-34356038 | None:intergenic |
| GCAGCCTTCATGTCTTTAAT+AGG | 0.271223 | 1_3:-34352671 | None:intergenic |
| CAAAAGAACCAAATGCAAAA+AGG | 0.273542 | 1_3:+34355528 | Msa0115480:CDS |
| AGCGAAAGCACTGCCATCTT+TGG | 0.274022 | 1_3:-34355066 | None:intergenic |
| ATGGCAGTGCTTTCGCTAAA+TGG | 0.280098 | 1_3:+34355072 | Msa0115480:CDS |
| TCAGCATCTTGAGGCCAATT+AGG | 0.323877 | 1_3:-34352509 | None:intergenic |
| GCCTCAAGATGCTGATGGTT+GGG | 0.347115 | 1_3:+34352517 | Msa0115480:CDS |
| TAAAGTTGGGAAAGGGAAAA+AGG | 0.356731 | 1_3:+34355553 | Msa0115480:CDS |
| GAAGTTATCTTTACTAAAGC+AGG | 0.362361 | 1_3:+34358335 | Msa0115480:CDS |
| TGATTGAACTCTTGTTAGTT+TGG | 0.367683 | 1_3:-34352225 | None:intergenic |
| TTGTCCACAATCGTTATAGA+AGG | 0.369198 | 1_3:+34352741 | Msa0115480:CDS |
| TCACTCAAATCTGATGGTTC+TGG | 0.371232 | 1_3:+34352245 | Msa0115480:CDS |
| GGTGGACGCTTCGGCGCATT+AGG | 0.374547 | 1_3:-34355584 | None:intergenic |
| GACTAACATTCCAGATTTCC+AGG | 0.377669 | 1_3:+34358562 | Msa0115480:CDS |
| GAAGAAGCCTTATTTGGATA+AGG | 0.386677 | 1_3:+34356031 | Msa0115480:CDS |
| GCTTTAGTAAAGATAACTTC+TGG | 0.387977 | 1_3:-34358332 | None:intergenic |
| GTTGTAAAGAGAAAATGAAT+TGG | 0.401953 | 1_3:-34352147 | None:intergenic |
| TTGTAAAGAGAAAATGAATT+GGG | 0.405487 | 1_3:-34352146 | None:intergenic |
| TGCTGCTGCAGGAGAGGTGG+AGG | 0.407036 | 1_3:+34356364 | Msa0115480:CDS |
| TTTACAACAAACTCTTCAAC+CGG | 0.424293 | 1_3:+34352162 | Msa0115480:CDS |
| GTTACGAAATGGCAACGAAA+AGG | 0.426485 | 1_3:+34355000 | Msa0115480:CDS |
| AGAAATTAGGGTTAAATCAA+AGG | 0.430186 | 1_3:+34354971 | Msa0115480:intron |
| GGCTGCCTAGTGTTCTCTGC+TGG | 0.433044 | 1_3:-34352059 | None:intergenic |
| GAAATTAGGGTTAAATCAAA+GGG | 0.433589 | 1_3:+34354972 | Msa0115480:intron |
| GTTAGTCAAACACGATGGTT+TGG | 0.445608 | 1_3:-34358546 | None:intergenic |
| TTACGAAATGGCAACGAAAA+GGG | 0.447058 | 1_3:+34355001 | Msa0115480:CDS |
| TGGAAGAGGAGGATCCTAAT+TGG | 0.447524 | 1_3:+34352495 | Msa0115480:CDS |
| AGCTGCTGCTGCAGGAGAGG+TGG | 0.448405 | 1_3:+34356361 | Msa0115480:CDS |
| AAAGCAGTTGGTGGACGCTT+CGG | 0.448751 | 1_3:-34355593 | None:intergenic |
| TAGGCAGCCTCCTCCGACCA+TGG | 0.454179 | 1_3:+34352073 | Msa0115480:exon |
| CTTTAGTAAAGATAACTTCT+GGG | 0.455068 | 1_3:-34358331 | None:intergenic |
| TCAGAACACTGGATTGTCAA+TGG | 0.456395 | 1_3:-34358603 | None:intergenic |
| AGAAGGCTGTGCATATCATA+TGG | 0.459941 | 1_3:+34358113 | Msa0115480:CDS |
| AGACATGAAGGCTGCTGAAT+GGG | 0.460094 | 1_3:+34352679 | Msa0115480:CDS |
| TCTTCAAGAGACATAACATA+AGG | 0.460526 | 1_3:-34352347 | None:intergenic |
| GACAAGGAAGCTGCTGCTGC+AGG | 0.462916 | 1_3:+34356353 | Msa0115480:CDS |
| CTGATTCAAAGGATGTTAAG+AGG | 0.466487 | 1_3:+34355754 | Msa0115480:CDS |
| AAAGGGAACACGTTACGAAA+TGG | 0.466859 | 1_3:+34354989 | Msa0115480:CDS |
| TAAAGTGGGGTTTGAGAAAA+GGG | 0.468151 | 1_3:-34352189 | None:intergenic |
| GTAAAGTGGGGTTTGAGAAA+AGG | 0.470216 | 1_3:-34352190 | None:intergenic |
| CCTCAAGATGCTGATGGTTG+GGG | 0.471802 | 1_3:+34352518 | Msa0115480:CDS |
| GGTTTGAGAAAAGGGTCTTC+CGG | 0.471829 | 1_3:-34352181 | None:intergenic |
| GAATCATTAACCTGTAAAGT+GGG | 0.479361 | 1_3:-34352203 | None:intergenic |
| TGCATGTCAATGAGTGCAAC+AGG | 0.479421 | 1_3:-34355200 | None:intergenic |
| GGGTTCTGATAAGGAAGATA+AGG | 0.479785 | 1_3:+34356316 | Msa0115480:CDS |
| GGAATCATTAACCTGTAAAG+TGG | 0.480863 | 1_3:-34352204 | None:intergenic |
| AAATAGGTTGGTAAGGAAGC+TGG | 0.492839 | 1_3:+34355869 | Msa0115480:intron |
| GGATCAAGAGGGTTCTGATA+AGG | 0.494850 | 1_3:+34356307 | Msa0115480:intron |
| ATTGTGGACAAGAATAATCA+AGG | 0.499873 | 1_3:-34352729 | None:intergenic |
| GCCAAAATCAAAATGAATCT+CGG | 0.501868 | 1_3:+34355239 | Msa0115480:CDS |
| AAGACATGAAGGCTGCTGAA+TGG | 0.504100 | 1_3:+34352678 | Msa0115480:CDS |
| GATGGTTGGGGATTCAGTCT+TGG | 0.504265 | 1_3:+34352530 | Msa0115480:CDS |
| AGAAACCAGCAGAGAACACT+AGG | 0.506216 | 1_3:+34352054 | Msa0115480:five_prime_UTR |
| TTACCAACTTGTTGTGGAAG+AGG | 0.507121 | 1_3:+34352481 | Msa0115480:CDS |
| GTTCTCGTTCGTGCCAAAGA+TGG | 0.507354 | 1_3:+34355053 | Msa0115480:CDS |
| CTTCAAGAGACATAACATAA+GGG | 0.510035 | 1_3:-34352346 | None:intergenic |
| AGTTGCTGCACTTAAAGTAT+CGG | 0.515906 | 1_3:+34358304 | Msa0115480:CDS |
| TTATCATCTTGCCACACTAT+CGG | 0.517607 | 1_3:-34352638 | None:intergenic |
| TCTACAACTTCTTGAACTTG+AGG | 0.519587 | 1_3:-34352416 | None:intergenic |
| TAATGATTACCAACTTGTTG+TGG | 0.520440 | 1_3:+34352475 | Msa0115480:CDS |
| GTAAGGAAGCTGGTGAGAAG+TGG | 0.524391 | 1_3:+34355879 | Msa0115480:CDS |
| CAGCTTCCTTGTCATCAGAC+TGG | 0.532712 | 1_3:-34356343 | None:intergenic |
| ATCATCAACATCATCGTCCT+CGG | 0.534011 | 1_3:-34352609 | None:intergenic |
| AACACGATGGTTTGGCTCCA+CGG | 0.534700 | 1_3:-34358538 | None:intergenic |
| TCTTAACATCCTTTGAATCA+GGG | 0.535919 | 1_3:-34355752 | None:intergenic |
| GGATAAGGTTGTTGAACTGA+AGG | 0.538046 | 1_3:+34356046 | Msa0115480:CDS |
| GAAGTGGAGGTCTCTGACTG+AGG | 0.540601 | 1_3:+34355895 | Msa0115480:CDS |
| GGAAGCTAACCCTGATTCAA+AGG | 0.545294 | 1_3:+34355743 | Msa0115480:CDS |
| ATGAAAACAAAGAAAGCAGT+TGG | 0.548460 | 1_3:-34355605 | None:intergenic |
| GGAAGCTGCTGCTGCAGGAG+AGG | 0.549573 | 1_3:+34356358 | Msa0115480:CDS |
| GGCCTCAAGATGCTGATGGT+TGG | 0.550479 | 1_3:+34352516 | Msa0115480:CDS |
| CAAACCTTCTATAACGATTG+TGG | 0.550589 | 1_3:-34352745 | None:intergenic |
| TTTATTACTTACTCTTGGTG+AGG | 0.554532 | 1_3:-34358149 | None:intergenic |
| TTGAGTGCCATGGTCGGAGG+AGG | 0.555658 | 1_3:-34352080 | None:intergenic |
| TCAAATCTGATGGTTCTGGT+TGG | 0.565426 | 1_3:+34352249 | Msa0115480:CDS |
| AAAACAAAGAAAGCAGTTGG+TGG | 0.566440 | 1_3:-34355602 | None:intergenic |
| TTATTACTTACTCTTGGTGA+GGG | 0.566848 | 1_3:-34358148 | None:intergenic |
| GTTCAATCACTCAAATCTGA+TGG | 0.569587 | 1_3:+34352239 | Msa0115480:CDS |
| CCTCCTCTTCCACAACAAGT+TGG | 0.573358 | 1_3:-34352484 | None:intergenic |
| AAAAGGGCTAAAGTTGGGAA+AGG | 0.581404 | 1_3:+34355545 | Msa0115480:CDS |
| GGATTGTCAATGGTAAAAGA+AGG | 0.585441 | 1_3:-34358593 | None:intergenic |
| TCGTCCTATTAAAGACATGA+AGG | 0.589532 | 1_3:+34352667 | Msa0115480:CDS |
| GGCAAATTGAGTGCCATGGT+CGG | 0.590720 | 1_3:-34352086 | None:intergenic |
| CCAACTTGTTGTGGAAGAGG+AGG | 0.593627 | 1_3:+34352484 | Msa0115480:CDS |
| AGCAGCATTATACAATTCCA+TGG | 0.595262 | 1_3:-34356084 | None:intergenic |
| AATTCGAGAAGAACTAGAGA+AGG | 0.595768 | 1_3:+34358096 | Msa0115480:CDS |
| AAGTTATCTTTACTAAAGCA+GGG | 0.597570 | 1_3:+34358336 | Msa0115480:CDS |
| AATTGGCCTCAAGATGCTGA+TGG | 0.603896 | 1_3:+34352512 | Msa0115480:CDS |
| CATGAAGGCTGCTGAATGGG+AGG | 0.605185 | 1_3:+34352682 | Msa0115480:CDS |
| AGGAAGCTGGTGAGAAGTGG+AGG | 0.606568 | 1_3:+34355882 | Msa0115480:CDS |
| CTCTTGAAGAGAGACAAGAA+TGG | 0.610559 | 1_3:+34352360 | Msa0115480:CDS |
| ATATGTTTCATTGATGACAG+TGG | 0.611526 | 1_3:-34352107 | None:intergenic |
| GGCAGAATATGAGAAGGCCA+TGG | 0.615072 | 1_3:+34356067 | Msa0115480:CDS |
| TGATTCAAAGGATGTTAAGA+GGG | 0.616338 | 1_3:+34355755 | Msa0115480:CDS |
| AAAGGGCTAAAGTTGGGAAA+GGG | 0.618574 | 1_3:+34355546 | Msa0115480:CDS |
| GCTGTATGTATAGGATCAAG+AGG | 0.620076 | 1_3:+34356295 | Msa0115480:intron |
| GGAAGATAATGATGATGCCG+AGG | 0.624630 | 1_3:+34352592 | Msa0115480:CDS |
| AAATTGAGTGCCATGGTCGG+AGG | 0.630316 | 1_3:-34352083 | None:intergenic |
| TGAAGCGGAACGAGAATCGA+CGG | 0.630596 | 1_3:-34355030 | None:intergenic |
| AATCATTAACCTGTAAAGTG+GGG | 0.632642 | 1_3:-34352202 | None:intergenic |
| CCCCAACCATCAGCATCTTG+AGG | 0.632853 | 1_3:-34352518 | None:intergenic |
| TTGTGGACAAGAATAATCAA+GGG | 0.634415 | 1_3:-34352728 | None:intergenic |
| GGCACGAACGAGAACTGAAG+CGG | 0.641201 | 1_3:-34355045 | None:intergenic |
| GGAAGGCCAGTCTGATGACA+AGG | 0.644830 | 1_3:+34356337 | Msa0115480:CDS |
| ACAGATCAATACCTTTATCA+CGG | 0.653404 | 1_3:-34358370 | None:intergenic |
| CAATTCGCAGTGCAGATGAG+TGG | 0.653894 | 1_3:+34358489 | Msa0115480:CDS |
| TCTGATAAGGAAGATAAGGA+AGG | 0.664708 | 1_3:+34356320 | Msa0115480:CDS |
| CAGTGGCAAATTGAGTGCCA+TGG | 0.668004 | 1_3:-34352090 | None:intergenic |
| ACTGAAGGCAGAATATGAGA+AGG | 0.674706 | 1_3:+34356061 | Msa0115480:CDS |
| TGATAGCGACGACGATGACG+AGG | 0.679731 | 1_3:+34352307 | Msa0115480:CDS |
| CTGTATGTATAGGATCAAGA+GGG | 0.690024 | 1_3:+34356296 | Msa0115480:intron |
| ATGATGATAAGCCGATAGTG+TGG | 0.713878 | 1_3:+34352627 | Msa0115480:CDS |
| CTGAAGTGAAGAAACCCGAG+AGG | 0.719762 | 1_3:+34355395 | Msa0115480:CDS |
| GGAATGTTAGTCAAACACGA+TGG | 0.721819 | 1_3:-34358551 | None:intergenic |
| TCAAGAAGTTGTAGACACCG+AGG | 0.738091 | 1_3:+34352424 | Msa0115480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTTAAAA+AGG | + | chr1_3:34359199-34359218 | Msa0115480:intron | 0.0% |
| !! | ATAATAATTAGTACTAATTA+GGG | - | chr1_3:34355288-34355307 | None:intergenic | 10.0% |
| !!! | GTATTTGATTTTATTTAATT+TGG | + | chr1_3:34355340-34355359 | Msa0115480:intron | 10.0% |
| !!! | TTTATTTTTTGAAATATTGT+AGG | + | chr1_3:34355492-34355511 | Msa0115480:intron | 10.0% |
| !!! | AGATAAAAAAACAATAGTTT+TGG | - | chr1_3:34352819-34352838 | None:intergenic | 15.0% |
| !!! | TAAGAAAAGATTCTTTTTTT+AGG | + | chr1_3:34354037-34354056 | Msa0115480:intron | 15.0% |
| !! | AAAAAAAGGAAAAACTTAAA+AGG | + | chr1_3:34354801-34354820 | Msa0115480:intron | 15.0% |
| !! | GATAATAATTAGTACTAATT+AGG | - | chr1_3:34355289-34355308 | None:intergenic | 15.0% |
| !! | AAAAATCACAAACTAAAATT+GGG | - | chr1_3:34355433-34355452 | None:intergenic | 15.0% |
| !! | AAAAAATCACAAACTAAAAT+TGG | - | chr1_3:34355434-34355453 | None:intergenic | 15.0% |
| !! | TTACTTATATTGTGAAAAAT+AGG | + | chr1_3:34355853-34355872 | Msa0115480:intron | 15.0% |
| !! | GAAATGAAAGATATTAATAT+AGG | + | chr1_3:34357077-34357096 | Msa0115480:intron | 15.0% |
| !!! | AATGTTTTTATTTATCTTAC+TGG | + | chr1_3:34359122-34359141 | Msa0115480:intron | 15.0% |
| !! | TTGTAAAGAGAAAATGAATT+GGG | - | chr1_3:34352149-34352168 | None:intergenic | 20.0% |
| !! | TACAATACAAAACAAAAAGA+AGG | + | chr1_3:34352571-34352590 | Msa0115480:CDS | 20.0% |
| !! | TGTGATATAAGAAGAAAAAA+AGG | - | chr1_3:34354182-34354201 | None:intergenic | 20.0% |
| !! | AACTAAACTAAATCAAGAAA+AGG | - | chr1_3:34354214-34354233 | None:intergenic | 20.0% |
| !! | TAGAATACAATGCATATATA+TGG | + | chr1_3:34354321-34354340 | Msa0115480:intron | 20.0% |
| !!! | TTGTTCCATTTTTCATAAAT+GGG | - | chr1_3:34354747-34354766 | None:intergenic | 20.0% |
| !!! | TTTGTTCCATTTTTCATAAA+TGG | - | chr1_3:34354748-34354767 | None:intergenic | 20.0% |
| !! | AAGAAGAAGATTAAGAAATT+AGG | + | chr1_3:34354958-34354977 | Msa0115480:intron | 20.0% |
| !! | AGAAGAAGATTAAGAAATTA+GGG | + | chr1_3:34354959-34354978 | Msa0115480:intron | 20.0% |
| !! | AAAATCACAAACTAAAATTG+GGG | - | chr1_3:34355432-34355451 | None:intergenic | 20.0% |
| !!! | TCTGGTTTTTATTAGTATTT+AGG | + | chr1_3:34355457-34355476 | Msa0115480:intron | 20.0% |
| !!! | TGAGTTTAGAAAGATTTTTA+AGG | + | chr1_3:34355722-34355741 | Msa0115480:CDS | 20.0% |
| !!! | TTTTCACAATATAAGTAACA+TGG | - | chr1_3:34355851-34355870 | None:intergenic | 20.0% |
| !! | TTATATTGTGAAAAATAGGT+TGG | + | chr1_3:34355857-34355876 | Msa0115480:intron | 20.0% |
| !!! | TGTTTTGATTTGTTTTGATT+TGG | + | chr1_3:34355946-34355965 | Msa0115480:intron | 20.0% |
| !! | TGATATGGTTAAAATTGTTT+AGG | + | chr1_3:34356007-34356026 | Msa0115480:intron | 20.0% |
| !! | AAAGTATGAATAATCAAACA+TGG | + | chr1_3:34356931-34356950 | Msa0115480:intron | 20.0% |
| !! | AAGTATGAATAATCAAACAT+GGG | + | chr1_3:34356932-34356951 | Msa0115480:intron | 20.0% |
| !! | ATGAAAGATATTAATATAGG+TGG | + | chr1_3:34357080-34357099 | Msa0115480:intron | 20.0% |
| !! | ATTTCAAGAAATCACATATT+GGG | - | chr1_3:34357440-34357459 | None:intergenic | 20.0% |
| !! | TATTTCAAGAAATCACATAT+TGG | - | chr1_3:34357441-34357460 | None:intergenic | 20.0% |
| !!! | ATCAAATTTGAAATAGAAAC+TGG | + | chr1_3:34357479-34357498 | Msa0115480:intron | 20.0% |
| !!! | TCAAATTTGAAATAGAAACT+GGG | + | chr1_3:34357480-34357499 | Msa0115480:intron | 20.0% |
| !! | GTATCAAATAATTTCATTTC+CGG | - | chr1_3:34357581-34357600 | None:intergenic | 20.0% |
| !! | NNNNNTGGAAATCTATTGAT+CGG | - | chr1_3:34357659-34357678 | None:intergenic | 20.0% |
| !!! | TCATTGTATCTTTTTTGAAA+TGG | + | chr1_3:34357882-34357901 | Msa0115480:intron | 20.0% |
| !!! | CATTGTATCTTTTTTGAAAT+GGG | + | chr1_3:34357883-34357902 | Msa0115480:intron | 20.0% |
| !!! | ACATTTTCACTTTTATTCTT+AGG | + | chr1_3:34358056-34358075 | Msa0115480:intron | 20.0% |
| !!! | CTTTTACTGAATTTTGTATT+TGG | - | chr1_3:34358398-34358417 | None:intergenic | 20.0% |
| !! | ATGAATCTTCATTTACAAAT+TGG | + | chr1_3:34358857-34358876 | Msa0115480:intron | 20.0% |
| !! | ATTAAAGATAGCAATATTCA+AGG | - | chr1_3:34359099-34359118 | None:intergenic | 20.0% |
| ! | GTTGTAAAGAGAAAATGAAT+TGG | - | chr1_3:34352150-34352169 | None:intergenic | 25.0% |
| ! | AAGAAAAATCAGACAGTTTA+TGG | + | chr1_3:34352385-34352404 | Msa0115480:CDS | 25.0% |
| !!! | TTATCTTGTTTTAGTTGAAG+TGG | + | chr1_3:34352843-34352862 | Msa0115480:intron | 25.0% |
| ! | GTTAGTCGATTATCAATTAA+TGG | + | chr1_3:34352880-34352899 | Msa0115480:intron | 25.0% |
| ! | AGTTATTGCAGAGTATATTT+AGG | + | chr1_3:34353262-34353281 | Msa0115480:intron | 25.0% |
| !! | TTATCTACCTCTATTTTACT+AGG | + | chr1_3:34353817-34353836 | Msa0115480:intron | 25.0% |
| !! | CTAAGCTAAAAATATGGTTT+TGG | - | chr1_3:34353928-34353947 | None:intergenic | 25.0% |
| ! | AACAAGCTAAGCTAAAAATA+TGG | - | chr1_3:34353934-34353953 | None:intergenic | 25.0% |
| !! | TCTTTTCTTATATATGAGAC+CGG | - | chr1_3:34354027-34354046 | None:intergenic | 25.0% |
| !! | ATGTATGATACGATTTTCAA+TGG | + | chr1_3:34354110-34354129 | Msa0115480:intron | 25.0% |
| !!! | GTGTTTTTTGAGGTTTTATT+AGG | - | chr1_3:34354586-34354605 | None:intergenic | 25.0% |
| ! | GCAATCAAAAAAGAAGAATA+AGG | + | chr1_3:34354677-34354696 | Msa0115480:intron | 25.0% |
| ! | CAAAAAAGAAGAATAAGGAA+AGG | + | chr1_3:34354682-34354701 | Msa0115480:intron | 25.0% |
| ! | ATCGAAAAACGCAAAAAAAA+AGG | + | chr1_3:34354787-34354806 | Msa0115480:intron | 25.0% |
| !!! | ATTTTGGGGTTTTTGTTTTT+TGG | - | chr1_3:34354853-34354872 | None:intergenic | 25.0% |
| !! | GGAAAAACTCAATAATTTTG+GGG | - | chr1_3:34354867-34354886 | None:intergenic | 25.0% |
| !! | GGGAAAAACTCAATAATTTT+GGG | - | chr1_3:34354868-34354887 | None:intergenic | 25.0% |
| !! | AGGGAAAAACTCAATAATTT+TGG | - | chr1_3:34354869-34354888 | None:intergenic | 25.0% |
| !! | AGTTGAGATCTGAAATTTAA+TGG | - | chr1_3:34354896-34354915 | None:intergenic | 25.0% |
| ! | TCTTAATCTTCTTCTTCAAA+TGG | - | chr1_3:34354954-34354973 | None:intergenic | 25.0% |
| ! | AGAAATTAGGGTTAAATCAA+AGG | + | chr1_3:34354971-34354990 | Msa0115480:intron | 25.0% |
| ! | GAAATTAGGGTTAAATCAAA+GGG | + | chr1_3:34354972-34354991 | Msa0115480:intron | 25.0% |
| !! | GAAAAAGAGTATATACGAAA+TGG | - | chr1_3:34355123-34355142 | None:intergenic | 25.0% |
| ! | AAATCACAAACTAAAATTGG+GGG | - | chr1_3:34355431-34355450 | None:intergenic | 25.0% |
| ! | AAAAGAACCAAATGCAAAAA+GGG | + | chr1_3:34355529-34355548 | Msa0115480:CDS | 25.0% |
| !!! | CTTTCTTTGTTTTCATGTAA+GGG | + | chr1_3:34355612-34355631 | Msa0115480:intron | 25.0% |
| !! | TGTTCTGTTTTGTAATGTTT+TGG | + | chr1_3:34355651-34355670 | Msa0115480:intron | 25.0% |
| ! | TTGTTTGATTAAGTTATCCA+AGG | + | chr1_3:34355813-34355832 | Msa0115480:intron | 25.0% |
| ! | TGTTTGATTAAGTTATCCAA+GGG | + | chr1_3:34355814-34355833 | Msa0115480:intron | 25.0% |
| ! | GCTGATATAATGTTATGATA+TGG | + | chr1_3:34355992-34356011 | Msa0115480:intron | 25.0% |
| !!! | AGTGAAGCATGTTTTATTTT+GGG | + | chr1_3:34356213-34356232 | Msa0115480:intron | 25.0% |
| ! | AACTATACAACTTTAGACTA+AGG | - | chr1_3:34356463-34356482 | None:intergenic | 25.0% |
| !! | TAGTCTAAAGTTGTATAGTT+TGG | + | chr1_3:34356463-34356482 | Msa0115480:intron | 25.0% |
| ! | AACATGTCTTAGTTATGTTT+AGG | + | chr1_3:34356486-34356505 | Msa0115480:intron | 25.0% |
| ! | ACATGTCTTAGTTATGTTTA+GGG | + | chr1_3:34356487-34356506 | Msa0115480:intron | 25.0% |
| ! | TTATCGAAATATGAACTTTG+AGG | + | chr1_3:34356811-34356830 | Msa0115480:intron | 25.0% |
| ! | TATCGAAATATGAACTTTGA+GGG | + | chr1_3:34356812-34356831 | Msa0115480:intron | 25.0% |
| !! | TATGTGAAACTTTATTTCAG+TGG | - | chr1_3:34356863-34356882 | None:intergenic | 25.0% |
| ! | TTCATACTTTGTATAATGCA+TGG | - | chr1_3:34356921-34356940 | None:intergenic | 25.0% |
| ! | GTATCAATAAATGGAATAAC+AGG | - | chr1_3:34357368-34357387 | None:intergenic | 25.0% |
| !! | TCTAACTTCAAAAGCATATT+AGG | - | chr1_3:34357986-34358005 | None:intergenic | 25.0% |
| ! | TAAAAGTGAAAATGTTAGAC+AGG | - | chr1_3:34358051-34358070 | None:intergenic | 25.0% |
| ! | ATGACTTTATTACTTACTCT+TGG | - | chr1_3:34358157-34358176 | None:intergenic | 25.0% |
| !! | TATAATGATATGAAAGTGTG+TGG | + | chr1_3:34358253-34358272 | Msa0115480:intron | 25.0% |
| ! | CTTTAGTAAAGATAACTTCT+GGG | - | chr1_3:34358334-34358353 | None:intergenic | 25.0% |
| ! | AAGTTATCTTTACTAAAGCA+GGG | + | chr1_3:34358336-34358355 | Msa0115480:CDS | 25.0% |
| !! | AAGATTTTATACCGTGATAA+AGG | + | chr1_3:34358359-34358378 | Msa0115480:CDS | 25.0% |
| ! | TCATTGTGTAAAATATGCAA+GGG | + | chr1_3:34358690-34358709 | Msa0115480:intron | 25.0% |
| ! | ACTGGAAAACAAAGAAAAAT+TGG | + | chr1_3:34359140-34359159 | Msa0115480:intron | 25.0% |
| ! | TACACTATTATGTTGATATC+AGG | - | chr1_3:34359171-34359190 | None:intergenic | 25.0% |
| !!! | TTTTTTTAAAAAGGTGCAAG+AGG | + | chr1_3:34359208-34359227 | Msa0115480:intron | 25.0% |
| ! | ATATGTTTCATTGATGACAG+TGG | - | chr1_3:34352110-34352129 | None:intergenic | 30.0% |
| TTTACAACAAACTCTTCAAC+CGG | + | chr1_3:34352162-34352181 | Msa0115480:CDS | 30.0% | |
| AATCATTAACCTGTAAAGTG+GGG | - | chr1_3:34352205-34352224 | None:intergenic | 30.0% | |
| GAATCATTAACCTGTAAAGT+GGG | - | chr1_3:34352206-34352225 | None:intergenic | 30.0% | |
| TGATTGAACTCTTGTTAGTT+TGG | - | chr1_3:34352228-34352247 | None:intergenic | 30.0% | |
| !! | ACATAAGGGTCATTTTCTTT+CGG | - | chr1_3:34352335-34352354 | None:intergenic | 30.0% |
| CTTCAAGAGACATAACATAA+GGG | - | chr1_3:34352349-34352368 | None:intergenic | 30.0% | |
| TCTTCAAGAGACATAACATA+AGG | - | chr1_3:34352350-34352369 | None:intergenic | 30.0% | |
| ! | CATTTTCTTCTTCTTTTCCT+CGG | - | chr1_3:34352444-34352463 | None:intergenic | 30.0% |
| !! | TAATGATTACCAACTTGTTG+TGG | + | chr1_3:34352475-34352494 | Msa0115480:CDS | 30.0% |
| TTGTGGACAAGAATAATCAA+GGG | - | chr1_3:34352731-34352750 | None:intergenic | 30.0% | |
| ATTGTGGACAAGAATAATCA+AGG | - | chr1_3:34352732-34352751 | None:intergenic | 30.0% | |
| ! | TTATCAATTAATGGCCGTTT+TGG | + | chr1_3:34352889-34352908 | Msa0115480:intron | 30.0% |
| !! | TGACTGAGTTGTTTGTTATT+TGG | + | chr1_3:34352919-34352938 | Msa0115480:intron | 30.0% |
| TTTCCACCTGTTTATATACA+TGG | + | chr1_3:34353092-34353111 | Msa0115480:intron | 30.0% | |
| TTCCACCTGTTTATATACAT+GGG | + | chr1_3:34353093-34353112 | Msa0115480:intron | 30.0% | |
| !! | AATTTTAGCACTCACATAAG+AGG | + | chr1_3:34353190-34353209 | Msa0115480:intron | 30.0% |
| GTACTAGCTGTCATATAATT+AGG | + | chr1_3:34353222-34353241 | Msa0115480:intron | 30.0% | |
| ! | AGCATATACCTTTTCATACA+TGG | + | chr1_3:34353356-34353375 | Msa0115480:intron | 30.0% |
| CTTTGATACCATGTATGAAA+AGG | - | chr1_3:34353367-34353386 | None:intergenic | 30.0% | |
| CTGAAAACCATAGTTCTTTA+AGG | - | chr1_3:34353423-34353442 | None:intergenic | 30.0% | |
| TCAAGTCATCAACATAAACT+AGG | - | chr1_3:34353506-34353525 | None:intergenic | 30.0% | |
| !!! | GGTGTCTTGAAGTATTTTTT+GGG | + | chr1_3:34353603-34353622 | Msa0115480:intron | 30.0% |
| !!! | TTAGCTTGTTTTAGTCTAAG+TGG | + | chr1_3:34353944-34353963 | Msa0115480:intron | 30.0% |
| ! | ACGATTTTCAATGGTCATTT+TGG | + | chr1_3:34354119-34354138 | Msa0115480:intron | 30.0% |
| ! | TTCTGAGAGAATAAGAGATT+TGG | + | chr1_3:34354292-34354311 | Msa0115480:intron | 30.0% |
| ATGGATTTCTATCATGATTC+AGG | + | chr1_3:34354340-34354359 | Msa0115480:intron | 30.0% | |
| AAACACACGTCGAAATATTT+CGG | + | chr1_3:34354600-34354619 | Msa0115480:intron | 30.0% | |
| ! | AATACTCCCATTTTACTGTT+GGG | - | chr1_3:34354708-34354727 | None:intergenic | 30.0% |
| !!! | GGGTTTTTGTTTTTTGGTTT+TGG | - | chr1_3:34354847-34354866 | None:intergenic | 30.0% |
| ! | TCTGAAATTTAATGGAAGGA+GGG | - | chr1_3:34354888-34354907 | None:intergenic | 30.0% |
| ! | ATCTGAAATTTAATGGAAGG+AGG | - | chr1_3:34354889-34354908 | None:intergenic | 30.0% |
| ! | GAGATCTGAAATTTAATGGA+AGG | - | chr1_3:34354892-34354911 | None:intergenic | 30.0% |
| !!! | TCATTTTGATTTTGGCTTCA+AGG | - | chr1_3:34355235-34355254 | None:intergenic | 30.0% |
| GCCAAAATCAAAATGAATCT+CGG | + | chr1_3:34355239-34355258 | Msa0115480:CDS | 30.0% | |
| !!! | ACCGAGATTCATTTTGATTT+TGG | - | chr1_3:34355243-34355262 | None:intergenic | 30.0% |
| !!! | AGTTTGTGATTTTTTGACTC+TGG | + | chr1_3:34355439-34355458 | Msa0115480:intron | 30.0% |
| !!! | GCATTTGGTTCTTTTGAATT+TGG | - | chr1_3:34355524-34355543 | None:intergenic | 30.0% |
| CAAAAGAACCAAATGCAAAA+AGG | + | chr1_3:34355528-34355547 | Msa0115480:CDS | 30.0% | |
| ATGAAAACAAAGAAAGCAGT+TGG | - | chr1_3:34355608-34355627 | None:intergenic | 30.0% | |
| !!! | GCTTTCTTTGTTTTCATGTA+AGG | + | chr1_3:34355611-34355630 | Msa0115480:intron | 30.0% |
| !! | TTTGTTTTCATGTAAGGGTT+TGG | + | chr1_3:34355617-34355636 | Msa0115480:intron | 30.0% |
| !!! | TGTTTTGGTTCTATAGTTTG+AGG | + | chr1_3:34355666-34355685 | Msa0115480:intron | 30.0% |
| !!! | GTTTTGGTTCTATAGTTTGA+GGG | + | chr1_3:34355667-34355686 | Msa0115480:intron | 30.0% |
| !!! | TTTTGGTTCTATAGTTTGAG+GGG | + | chr1_3:34355668-34355687 | Msa0115480:intron | 30.0% |
| !! | TGATTGGTTTGATTTGTTTC+AGG | + | chr1_3:34355697-34355716 | Msa0115480:intron | 30.0% |
| !! | GATTGGTTTGATTTGTTTCA+GGG | + | chr1_3:34355698-34355717 | Msa0115480:intron | 30.0% |
| TCTTAACATCCTTTGAATCA+GGG | - | chr1_3:34355755-34355774 | None:intergenic | 30.0% | |
| TGATTCAAAGGATGTTAAGA+GGG | + | chr1_3:34355755-34355774 | Msa0115480:CDS | 30.0% | |
| !! | TTGTGAAAAATAGGTTGGTA+AGG | + | chr1_3:34355862-34355881 | Msa0115480:intron | 30.0% |
| TCAACAACCTTATCCAAATA+AGG | - | chr1_3:34356041-34356060 | None:intergenic | 30.0% | |
| ! | AAGTGAAGTATGTTTTCCTT+TGG | + | chr1_3:34356115-34356134 | Msa0115480:intron | 30.0% |
| ! | AGTGAAGTATGTTTTCCTTT+GGG | + | chr1_3:34356116-34356135 | Msa0115480:intron | 30.0% |
| AAACAAAATTAGAAGCCCAA+AGG | - | chr1_3:34356134-34356153 | None:intergenic | 30.0% | |
| TTTGCTTTCTTTACTTAAGC+TGG | + | chr1_3:34356174-34356193 | Msa0115480:intron | 30.0% | |
| !!! | GAGTGAAGCATGTTTTATTT+TGG | + | chr1_3:34356212-34356231 | Msa0115480:intron | 30.0% |
| CTAGCAGAAAATAATGTAAC+TGG | - | chr1_3:34356586-34356605 | None:intergenic | 30.0% | |
| GAATACATGATCACAAGATA+TGG | - | chr1_3:34356629-34356648 | None:intergenic | 30.0% | |
| TATCTTGTGATCATGTATTC+TGG | + | chr1_3:34356629-34356648 | Msa0115480:intron | 30.0% | |
| ATTGTTACACGAGATAGATT+AGG | - | chr1_3:34357108-34357127 | None:intergenic | 30.0% | |
| TAATCTATCTCGTGTAACAA+TGG | + | chr1_3:34357107-34357126 | Msa0115480:intron | 30.0% | |
| TGGCTTGATGTATCAATAAA+TGG | - | chr1_3:34357377-34357396 | None:intergenic | 30.0% | |
| CAAATTTGATTGAACTTGAG+AGG | - | chr1_3:34357469-34357488 | None:intergenic | 30.0% | |
| ! | TTTGAAATAGAAACTGGGAT+TGG | + | chr1_3:34357485-34357504 | Msa0115480:intron | 30.0% |
| ACATTCCAGAATTTGTAGAA+GGG | - | chr1_3:34357556-34357575 | None:intergenic | 30.0% | |
| ACTTGACTGTAAACATGATA+TGG | - | chr1_3:34358014-34358033 | None:intergenic | 30.0% | |
| ! | AATGTTAGACAGGATTGTTT+TGG | - | chr1_3:34358041-34358060 | None:intergenic | 30.0% |
| !!! | CGAATTTTTTCATTGTCCTT+TGG | - | chr1_3:34358082-34358101 | None:intergenic | 30.0% |
| TTATTACTTACTCTTGGTGA+GGG | - | chr1_3:34358151-34358170 | None:intergenic | 30.0% | |
| TTTATTACTTACTCTTGGTG+AGG | - | chr1_3:34358152-34358171 | None:intergenic | 30.0% | |
| AAGTCATACAATCATTCCTT+TGG | + | chr1_3:34358170-34358189 | Msa0115480:intron | 30.0% | |
| GATAAAATAGCTGAAACCAA+AGG | - | chr1_3:34358189-34358208 | None:intergenic | 30.0% | |
| !! | CAGCTATTTTATCACAAAGT+TGG | + | chr1_3:34358196-34358215 | Msa0115480:intron | 30.0% |
| GCTTTAGTAAAGATAACTTC+TGG | - | chr1_3:34358335-34358354 | None:intergenic | 30.0% | |
| GAAGTTATCTTTACTAAAGC+AGG | + | chr1_3:34358335-34358354 | Msa0115480:CDS | 30.0% | |
| ACAGATCAATACCTTTATCA+CGG | - | chr1_3:34358373-34358392 | None:intergenic | 30.0% | |
| GATGGAGACGAATAAATAAA+TGG | - | chr1_3:34358434-34358453 | None:intergenic | 30.0% | |
| ! | TAAAAGAAGGAATGTTTTCC+TGG | - | chr1_3:34358583-34358602 | None:intergenic | 30.0% |
| !! | TCTTCAATTTTTCAGAACAC+TGG | - | chr1_3:34358617-34358636 | None:intergenic | 30.0% |
| ATGGAAATACTTCAACGATA+TGG | - | chr1_3:34358659-34358678 | None:intergenic | 30.0% | |
| GTCATTGTGTAAAATATGCA+AGG | + | chr1_3:34358689-34358708 | Msa0115480:intron | 30.0% | |
| ATCATATTGTATGCAGTCAA+TGG | - | chr1_3:34358731-34358750 | None:intergenic | 30.0% | |
| !! | TTGGTGGGTTAAAAGAAAAA+TGG | + | chr1_3:34358824-34358843 | Msa0115480:intron | 30.0% |
| GTACTTTCTAAATATGCACA+AGG | - | chr1_3:34358908-34358927 | None:intergenic | 30.0% | |
| AGTACATATACTATTTGCAG+TGG | + | chr1_3:34358923-34358942 | Msa0115480:intron | 30.0% | |
| GTACATATACTATTTGCAGT+GGG | + | chr1_3:34358924-34358943 | Msa0115480:intron | 30.0% | |
| TAAAGTGGGGTTTGAGAAAA+GGG | - | chr1_3:34352192-34352211 | None:intergenic | 35.0% | |
| GGAATCATTAACCTGTAAAG+TGG | - | chr1_3:34352207-34352226 | None:intergenic | 35.0% | |
| GTTCAATCACTCAAATCTGA+TGG | + | chr1_3:34352239-34352258 | Msa0115480:CDS | 35.0% | |
| TCTACAACTTCTTGAACTTG+AGG | - | chr1_3:34352419-34352438 | None:intergenic | 35.0% | |
| TTATCATCTTGCCACACTAT+CGG | - | chr1_3:34352641-34352660 | None:intergenic | 35.0% | |
| TCGTCCTATTAAAGACATGA+AGG | + | chr1_3:34352667-34352686 | Msa0115480:CDS | 35.0% | |
| TTGTCCACAATCGTTATAGA+AGG | + | chr1_3:34352741-34352760 | Msa0115480:CDS | 35.0% | |
| CAAACCTTCTATAACGATTG+TGG | - | chr1_3:34352748-34352767 | None:intergenic | 35.0% | |
| TTCAGACAGAATTAGAGATC+TGG | + | chr1_3:34353044-34353063 | Msa0115480:intron | 35.0% | |
| ATAAACAGGTGGAAATCAAC+AGG | - | chr1_3:34353087-34353106 | None:intergenic | 35.0% | |
| AGTCTCCCATGTATATAAAC+AGG | - | chr1_3:34353101-34353120 | None:intergenic | 35.0% | |
| TATACATGGGAGACTATTAC+CGG | + | chr1_3:34353106-34353125 | Msa0115480:intron | 35.0% | |
| ACCAAATACACCTAATTGTC+CGG | - | chr1_3:34353128-34353147 | None:intergenic | 35.0% | |
| CACTCACATAAGAGGTAATT+AGG | + | chr1_3:34353198-34353217 | Msa0115480:intron | 35.0% | |
| AGAGTATATTTAGGCCTAGA+TGG | + | chr1_3:34353271-34353290 | Msa0115480:intron | 35.0% | |
| GAACAAGGAGTAGTCAAAAT+AGG | - | chr1_3:34353450-34353469 | None:intergenic | 35.0% | |
| GAAATGATCCAGTAGCTATA+TGG | + | chr1_3:34353535-34353554 | Msa0115480:intron | 35.0% | |
| TTCACTTTCCATATAGCTAC+TGG | - | chr1_3:34353546-34353565 | None:intergenic | 35.0% | |
| ! | GAACACACGTTTTCATAAGA+AGG | + | chr1_3:34353575-34353594 | Msa0115480:intron | 35.0% |
| ! | ACGTTTTCATAAGAAGGACT+TGG | + | chr1_3:34353581-34353600 | Msa0115480:intron | 35.0% |
| ! | CGTTTTCATAAGAAGGACTT+GGG | + | chr1_3:34353582-34353601 | Msa0115480:intron | 35.0% |
| !!! | GGGTGTCTTGAAGTATTTTT+TGG | + | chr1_3:34353602-34353621 | Msa0115480:intron | 35.0% |
| !!! | GTATTTTTTGGGTGTCAAAG+TGG | + | chr1_3:34353614-34353633 | Msa0115480:intron | 35.0% |
| AGCTTATGATTCTGCTTCAT+AGG | - | chr1_3:34353735-34353754 | None:intergenic | 35.0% | |
| TTCTTATATATGAGACCGGA+GGG | - | chr1_3:34354023-34354042 | None:intergenic | 35.0% | |
| TTTCTTATATATGAGACCGG+AGG | - | chr1_3:34354024-34354043 | None:intergenic | 35.0% | |
| CTCACTTTGCACACATAAAA+AGG | - | chr1_3:34354250-34354269 | None:intergenic | 35.0% | |
| !!! | ATTTCGACGTGTGTTTTTTG+AGG | - | chr1_3:34354596-34354615 | None:intergenic | 35.0% |
| !!! | CGGATTTTAGAATCCGAATA+AGG | + | chr1_3:34354620-34354639 | Msa0115480:intron | 35.0% |
| ! | CAATACTCCCATTTTACTGT+TGG | - | chr1_3:34354709-34354728 | None:intergenic | 35.0% |
| ! | CAACAGTAAAATGGGAGTAT+TGG | + | chr1_3:34354707-34354726 | Msa0115480:intron | 35.0% |
| ! | ATAAATGGGCTCAGTTTGTT+GGG | - | chr1_3:34354733-34354752 | None:intergenic | 35.0% |
| CTGAGCCCATTTATGAAAAA+TGG | + | chr1_3:34354739-34354758 | Msa0115480:intron | 35.0% | |
| TTACGAAATGGCAACGAAAA+GGG | + | chr1_3:34355001-34355020 | Msa0115480:CDS | 35.0% | |
| ! | ACTTTAGCCCTTTTTGCATT+TGG | - | chr1_3:34355539-34355558 | None:intergenic | 35.0% |
| AATGCAAAAAGGGCTAAAGT+TGG | + | chr1_3:34355539-34355558 | Msa0115480:CDS | 35.0% | |
| ATGCAAAAAGGGCTAAAGTT+GGG | + | chr1_3:34355540-34355559 | Msa0115480:CDS | 35.0% | |
| TAAAGTTGGGAAAGGGAAAA+AGG | + | chr1_3:34355553-34355572 | Msa0115480:CDS | 35.0% | |
| AAAACAAAGAAAGCAGTTGG+TGG | - | chr1_3:34355605-34355624 | None:intergenic | 35.0% | |
| ! | TTTCATGTAAGGGTTTGGTT+TGG | + | chr1_3:34355622-34355641 | Msa0115480:intron | 35.0% |
| CTCTTAACATCCTTTGAATC+AGG | - | chr1_3:34355756-34355775 | None:intergenic | 35.0% | |
| CTGATTCAAAGGATGTTAAG+AGG | + | chr1_3:34355754-34355773 | Msa0115480:CDS | 35.0% | |
| CATGGTCAATAATAAACCCT+TGG | - | chr1_3:34355833-34355852 | None:intergenic | 35.0% | |
| !! | TTAGGAGAAGAAGCCTTATT+TGG | + | chr1_3:34356025-34356044 | Msa0115480:intron | 35.0% |
| !! | GAAGAAGCCTTATTTGGATA+AGG | + | chr1_3:34356031-34356050 | Msa0115480:CDS | 35.0% |
| AGCAGCATTATACAATTCCA+TGG | - | chr1_3:34356087-34356106 | None:intergenic | 35.0% | |
| TTTGCTCTCTTTACTTAAGC+TGG | + | chr1_3:34356271-34356290 | Msa0115480:intron | 35.0% | |
| CTGTATGTATAGGATCAAGA+GGG | + | chr1_3:34356296-34356315 | Msa0115480:intron | 35.0% | |
| TCTGATAAGGAAGATAAGGA+AGG | + | chr1_3:34356320-34356339 | Msa0115480:CDS | 35.0% | |
| AGTTAACTGATGAAGAGTAG+TGG | + | chr1_3:34356387-34356406 | Msa0115480:intron | 35.0% | |
| ACAACTTTAGACTAAGGCAA+TGG | - | chr1_3:34356457-34356476 | None:intergenic | 35.0% | |
| ! | ATCTTTTTGCATTGTCCTCT+TGG | + | chr1_3:34356547-34356566 | Msa0115480:intron | 35.0% |
| GGCATTAACAATATTCCAAG+AGG | - | chr1_3:34356565-34356584 | None:intergenic | 35.0% | |
| ACATGATCACAAGATATGGA+AGG | - | chr1_3:34356625-34356644 | None:intergenic | 35.0% | |
| ! | CTGAAACCAGTAAATGCTTT+TGG | - | chr1_3:34356656-34356675 | None:intergenic | 35.0% |
| ! | GGATTGTTAACTGAGTATTG+AGG | + | chr1_3:34356833-34356852 | Msa0115480:intron | 35.0% |
| GAATAATCAAACATGGGTGT+AGG | + | chr1_3:34356938-34356957 | Msa0115480:intron | 35.0% | |
| GGATAGAAATAAGGGACAAT+TGG | - | chr1_3:34357179-34357198 | None:intergenic | 35.0% | |
| CATGCAAGGGATAGAAATAA+GGG | - | chr1_3:34357187-34357206 | None:intergenic | 35.0% | |
| ACTGGTGGAAAAATGTTGAA+TGG | + | chr1_3:34357251-34357270 | Msa0115480:intron | 35.0% | |
| ! | ATGTTGAATGGTCTAGTTTG+TGG | + | chr1_3:34357263-34357282 | Msa0115480:intron | 35.0% |
| ! | TCTAAAGCATGCAAGTTTCA+GGG | - | chr1_3:34357312-34357331 | None:intergenic | 35.0% |
| ! | ATCTAAAGCATGCAAGTTTC+AGG | - | chr1_3:34357313-34357332 | None:intergenic | 35.0% |
| TTATCTGTGATAAGCTACCT+GGG | + | chr1_3:34357336-34357355 | Msa0115480:intron | 35.0% | |
| TTTGATTGAACTTGAGAGGT+TGG | - | chr1_3:34357465-34357484 | None:intergenic | 35.0% | |
| CACATTCCAGAATTTGTAGA+AGG | - | chr1_3:34357557-34357576 | None:intergenic | 35.0% | |
| !! | TACAAATTCTGGAATGTGAC+CGG | + | chr1_3:34357559-34357578 | Msa0115480:intron | 35.0% |
| AAGTAAAATTGAACACCACC+AGG | - | chr1_3:34357911-34357930 | None:intergenic | 35.0% | |
| ATCACTACTATAGCCAAATG+CGG | - | chr1_3:34357957-34357976 | None:intergenic | 35.0% | |
| ! | CACTTTTATTCTTAGGCCAA+AGG | + | chr1_3:34358063-34358082 | Msa0115480:intron | 35.0% |
| AATTCGAGAAGAACTAGAGA+AGG | + | chr1_3:34358096-34358115 | Msa0115480:CDS | 35.0% | |
| AGTTGCTGCACTTAAAGTAT+CGG | + | chr1_3:34358304-34358323 | Msa0115480:CDS | 35.0% | |
| GACCATGACGAATTTCTATT+TGG | + | chr1_3:34358455-34358474 | Msa0115480:intron | 35.0% | |
| CACCAAATAGAAATTCGTCA+TGG | - | chr1_3:34358460-34358479 | None:intergenic | 35.0% | |
| CATGACGAATTTCTATTTGG+TGG | + | chr1_3:34358458-34358477 | Msa0115480:intron | 35.0% | |
| AGATGAGTGGTCAAAAATCA+TGG | + | chr1_3:34358502-34358521 | Msa0115480:CDS | 35.0% | |
| !!! | ATGGCATTTTTTTACTACCG+TGG | + | chr1_3:34358521-34358540 | Msa0115480:CDS | 35.0% |
| GGATTGTCAATGGTAAAAGA+AGG | - | chr1_3:34358596-34358615 | None:intergenic | 35.0% | |
| CACAATGACAAAATGCTAGA+TGG | - | chr1_3:34358678-34358697 | None:intergenic | 35.0% | |
| ACTGCAAGAAATTCATGCAA+TGG | + | chr1_3:34358757-34358776 | Msa0115480:intron | 35.0% | |
| CTGCAAGAAATTCATGCAAT+GGG | + | chr1_3:34358758-34358777 | Msa0115480:intron | 35.0% | |
| ! | AAAAAGGTGCAAGAGGAATA+TGG | + | chr1_3:34359215-34359234 | Msa0115480:intron | 35.0% |
| GTAAAGTGGGGTTTGAGAAA+AGG | - | chr1_3:34352193-34352212 | None:intergenic | 40.0% | |
| TTTCTCAAACCCCACTTTAC+AGG | + | chr1_3:34352193-34352212 | Msa0115480:CDS | 40.0% | |
| TCACTCAAATCTGATGGTTC+TGG | + | chr1_3:34352245-34352264 | Msa0115480:CDS | 40.0% | |
| !! | TCAAATCTGATGGTTCTGGT+TGG | + | chr1_3:34352249-34352268 | Msa0115480:CDS | 40.0% |
| CTCTTGAAGAGAGACAAGAA+TGG | + | chr1_3:34352360-34352379 | Msa0115480:CDS | 40.0% | |
| !! | TTACCAACTTGTTGTGGAAG+AGG | + | chr1_3:34352481-34352500 | Msa0115480:CDS | 40.0% |
| ATCATCAACATCATCGTCCT+CGG | - | chr1_3:34352612-34352631 | None:intergenic | 40.0% | |
| ATGATGATAAGCCGATAGTG+TGG | + | chr1_3:34352627-34352646 | Msa0115480:CDS | 40.0% | |
| GCAGCCTTCATGTCTTTAAT+AGG | - | chr1_3:34352674-34352693 | None:intergenic | 40.0% | |
| TGCTTGAGTAAGTAGCTGAA+TGG | + | chr1_3:34352785-34352804 | Msa0115480:intron | 40.0% | |
| TCAGTCAGAGTTCTCCAAAA+CGG | - | chr1_3:34352906-34352925 | None:intergenic | 40.0% | |
| CTCCCATGTATATAAACAGG+TGG | - | chr1_3:34353098-34353117 | None:intergenic | 40.0% | |
| GAGACTATTACCGGACAATT+AGG | + | chr1_3:34353115-34353134 | Msa0115480:intron | 40.0% | |
| ACCGGACAATTAGGTGTATT+TGG | + | chr1_3:34353124-34353143 | Msa0115480:intron | 40.0% | |
| CCTAGATGGAGTGATGTATT+CGG | + | chr1_3:34353285-34353304 | Msa0115480:intron | 40.0% | |
| CTAGATGGAGTGATGTATTC+GGG | + | chr1_3:34353286-34353305 | Msa0115480:intron | 40.0% | |
| TAGATGGAGTGATGTATTCG+GGG | + | chr1_3:34353287-34353306 | Msa0115480:intron | 40.0% | |
| TTTGGAAAACCAACACCTAG+GGG | - | chr1_3:34353390-34353409 | None:intergenic | 40.0% | |
| GTTTGGAAAACCAACACCTA+GGG | - | chr1_3:34353391-34353410 | None:intergenic | 40.0% | |
| AGTTTGGAAAACCAACACCT+AGG | - | chr1_3:34353392-34353411 | None:intergenic | 40.0% | |
| TCTGCTGCCTTAAAGAACTA+TGG | + | chr1_3:34353413-34353432 | Msa0115480:intron | 40.0% | |
| TGCAAGTTGCAACATGAACA+AGG | - | chr1_3:34353465-34353484 | None:intergenic | 40.0% | |
| CTTGCAGTATCACACAATTG+TGG | + | chr1_3:34353479-34353498 | Msa0115480:intron | 40.0% | |
| !! | GTTGATGACTTGATTGTCTC+AGG | + | chr1_3:34353513-34353532 | Msa0115480:intron | 40.0% |
| AAAGATACCGATAGCATTCC+TGG | - | chr1_3:34353640-34353659 | None:intergenic | 40.0% | |
| ATTCTTGAGACTGGGATTCT+AGG | + | chr1_3:34353690-34353709 | Msa0115480:intron | 40.0% | |
| ATTGTCAATGTCGTTCAGGT+TGG | - | chr1_3:34353785-34353804 | None:intergenic | 40.0% | |
| ACCTGAACGACATTGACAAT+TGG | + | chr1_3:34353785-34353804 | Msa0115480:intron | 40.0% | |
| ACCAATTGTCAATGTCGTTC+AGG | - | chr1_3:34353789-34353808 | None:intergenic | 40.0% | |
| GCTCTAGCCTAGTAAAATAG+AGG | - | chr1_3:34353827-34353846 | None:intergenic | 40.0% | |
| ATTCATGCAACAACCGACAA+TGG | + | chr1_3:34353875-34353894 | Msa0115480:intron | 40.0% | |
| AACCGACAATGGATCATTGA+AGG | + | chr1_3:34353886-34353905 | Msa0115480:intron | 40.0% | |
| AGCCTTCAATGATCCATTGT+CGG | - | chr1_3:34353891-34353910 | None:intergenic | 40.0% | |
| ATGGATCATTGAAGGCTGAA+TGG | + | chr1_3:34353894-34353913 | Msa0115480:intron | 40.0% | |
| CTAAGTGGCTGAATGCTAAT+TGG | + | chr1_3:34353959-34353978 | Msa0115480:intron | 40.0% | |
| TTGAAACTATCTACTCCCTC+CGG | + | chr1_3:34354005-34354024 | Msa0115480:intron | 40.0% | |
| GCTACAACTAGCAATCTACT+CGG | - | chr1_3:34354156-34354175 | None:intergenic | 40.0% | |
| AGTAGATTGCTAGTTGTAGC+TGG | + | chr1_3:34354156-34354175 | Msa0115480:intron | 40.0% | |
| CATGTATACACACAGGTTCT+TGG | - | chr1_3:34354368-34354387 | None:intergenic | 40.0% | |
| AGTCTCTCATGTATACACAC+AGG | - | chr1_3:34354375-34354394 | None:intergenic | 40.0% | |
| TCATACGGTGGGAAAAGTAA+TGG | + | chr1_3:34354655-34354674 | Msa0115480:intron | 40.0% | |
| GAAAGGCCCAACAGTAAAAT+GGG | + | chr1_3:34354699-34354718 | Msa0115480:intron | 40.0% | |
| ! | CATAAATGGGCTCAGTTTGT+TGG | - | chr1_3:34354734-34354753 | None:intergenic | 40.0% |
| !! | AACTTAAAAGGCGCTGTGAT+TGG | + | chr1_3:34354813-34354832 | Msa0115480:intron | 40.0% |
| AAAGGGAACACGTTACGAAA+TGG | + | chr1_3:34354989-34355008 | Msa0115480:CDS | 40.0% | |
| GTTACGAAATGGCAACGAAA+AGG | + | chr1_3:34355000-34355019 | Msa0115480:CDS | 40.0% | |
| AAAAGGGCTAAAGTTGGGAA+AGG | + | chr1_3:34355545-34355564 | Msa0115480:CDS | 40.0% | |
| AAAGGGCTAAAGTTGGGAAA+GGG | + | chr1_3:34355546-34355565 | Msa0115480:CDS | 40.0% | |
| TGGGAAAGGGAAAAAGGTTA+AGG | + | chr1_3:34355559-34355578 | Msa0115480:CDS | 40.0% | |
| GTTTGAGGGGTTTAGTTGAT+TGG | + | chr1_3:34355681-34355700 | Msa0115480:intron | 40.0% | |
| !! | AAATAGGTTGGTAAGGAAGC+TGG | + | chr1_3:34355869-34355888 | Msa0115480:intron | 40.0% |
| GGATAAGGTTGTTGAACTGA+AGG | + | chr1_3:34356046-34356065 | Msa0115480:CDS | 40.0% | |
| ACTGAAGGCAGAATATGAGA+AGG | + | chr1_3:34356061-34356080 | Msa0115480:CDS | 40.0% | |
| !! | TAAGCTGGTGCTGTATGTAT+AGG | + | chr1_3:34356286-34356305 | Msa0115480:intron | 40.0% |
| GCTGTATGTATAGGATCAAG+AGG | + | chr1_3:34356295-34356314 | Msa0115480:intron | 40.0% | |
| ! | GGGTTCTGATAAGGAAGATA+AGG | + | chr1_3:34356316-34356335 | Msa0115480:CDS | 40.0% |
| ! | GAAGAGTAGTGGTGACATTT+TGG | + | chr1_3:34356398-34356417 | Msa0115480:intron | 40.0% |
| !! | TCTGGTCCAAAAGCATTTAC+TGG | + | chr1_3:34356647-34356666 | Msa0115480:intron | 40.0% |
| AAGTTTCACATATGTGCCAG+TGG | + | chr1_3:34356871-34356890 | Msa0115480:intron | 40.0% | |
| CTCGTGTAACAATGGTCATA+AGG | + | chr1_3:34357115-34357134 | Msa0115480:intron | 40.0% | |
| CCATGCAAGGGATAGAAATA+AGG | - | chr1_3:34357188-34357207 | None:intergenic | 40.0% | |
| !! | CCTTATTTCTATCCCTTGCA+TGG | + | chr1_3:34357185-34357204 | Msa0115480:intron | 40.0% |
| TGCTTATGTGGCAAACCTTT+GGG | - | chr1_3:34357212-34357231 | None:intergenic | 40.0% | |
| GTTATCTGTGATAAGCTACC+TGG | + | chr1_3:34357335-34357354 | Msa0115480:intron | 40.0% | |
| TTGGGAAGCAACAATATCTC+AGG | - | chr1_3:34357512-34357531 | None:intergenic | 40.0% | |
| !! | AGCTTGAAGGTGCTAAACTT+GGG | - | chr1_3:34357530-34357549 | None:intergenic | 40.0% |
| !! | AAGCTTGAAGGTGCTAAACT+TGG | - | chr1_3:34357531-34357550 | None:intergenic | 40.0% |
| CTTGACCCTTCTACAAATTC+TGG | + | chr1_3:34357548-34357567 | Msa0115480:intron | 40.0% | |
| TGATATGACAAGCAGCTCTT+TGG | - | chr1_3:34357615-34357634 | None:intergenic | 40.0% | |
| !!! | TCTTTTTTGAAATGGGCTCC+TGG | + | chr1_3:34357890-34357909 | Msa0115480:intron | 40.0% |
| GCGGAAGTTATTTGCACATA+AGG | - | chr1_3:34357938-34357957 | None:intergenic | 40.0% | |
| GTGCAAATAACTTCCGCATT+TGG | + | chr1_3:34357941-34357960 | Msa0115480:intron | 40.0% | |
| AGAAGGCTGTGCATATCATA+TGG | + | chr1_3:34358113-34358132 | Msa0115480:CDS | 40.0% | |
| AGAAATTCGTCATGGTCAGA+TGG | - | chr1_3:34358452-34358471 | None:intergenic | 40.0% | |
| GTTAGTCAAACACGATGGTT+TGG | - | chr1_3:34358549-34358568 | None:intergenic | 40.0% | |
| GGAATGTTAGTCAAACACGA+TGG | - | chr1_3:34358554-34358573 | None:intergenic | 40.0% | |
| GACTAACATTCCAGATTTCC+AGG | + | chr1_3:34358562-34358581 | Msa0115480:CDS | 40.0% | |
| ! | GGAATGTTTTCCTGGAAATC+TGG | - | chr1_3:34358575-34358594 | None:intergenic | 40.0% |
| TCAGAACACTGGATTGTCAA+TGG | - | chr1_3:34358606-34358625 | None:intergenic | 40.0% | |
| GTAATCTGTGTGCATCAAGA+AGG | + | chr1_3:34358980-34358999 | Msa0115480:intron | 40.0% | |
| !! | AGGTTGATGGTGATAACTGT+CGG | + | chr1_3:34359012-34359031 | Msa0115480:intron | 40.0% |
| AGAAACCAGCAGAGAACACT+AGG | + | chr1_3:34352054-34352073 | Msa0115480:five_prime_UTR | 45.0% | |
| GGTTTGAGAAAAGGGTCTTC+CGG | - | chr1_3:34352184-34352203 | None:intergenic | 45.0% | |
| TCAAGAAGTTGTAGACACCG+AGG | + | chr1_3:34352424-34352443 | Msa0115480:CDS | 45.0% | |
| TGGAAGAGGAGGATCCTAAT+TGG | + | chr1_3:34352495-34352514 | Msa0115480:CDS | 45.0% | |
| TCAGCATCTTGAGGCCAATT+AGG | - | chr1_3:34352512-34352531 | None:intergenic | 45.0% | |
| ! | AATTGGCCTCAAGATGCTGA+TGG | + | chr1_3:34352512-34352531 | Msa0115480:CDS | 45.0% |
| ! | GGAAGATAATGATGATGCCG+AGG | + | chr1_3:34352592-34352611 | Msa0115480:CDS | 45.0% |
| AAGACATGAAGGCTGCTGAA+TGG | + | chr1_3:34352678-34352697 | Msa0115480:CDS | 45.0% | |
| AGACATGAAGGCTGCTGAAT+GGG | + | chr1_3:34352679-34352698 | Msa0115480:CDS | 45.0% | |
| CCGAATACATCACTCCATCT+AGG | - | chr1_3:34353288-34353307 | None:intergenic | 45.0% | |
| TACATGGTATCAAAGCCCCT+AGG | + | chr1_3:34353372-34353391 | Msa0115480:intron | 45.0% | |
| !! | CTTTAAGGCAGCAGAGAGTT+TGG | - | chr1_3:34353408-34353427 | None:intergenic | 45.0% |
| AAAGTGGCCAGGAATGCTAT+CGG | + | chr1_3:34353630-34353649 | Msa0115480:intron | 45.0% | |
| ! | AATGACGTCGAGAGCACATT+TGG | - | chr1_3:34353673-34353692 | None:intergenic | 45.0% |
| TCGACGTCATTCTTGAGACT+GGG | + | chr1_3:34353682-34353701 | Msa0115480:intron | 45.0% | |
| CATAGGCACACTAACAGGTT+AGG | - | chr1_3:34353718-34353737 | None:intergenic | 45.0% | |
| TGCTTCATAGGCACACTAAC+AGG | - | chr1_3:34353723-34353742 | None:intergenic | 45.0% | |
| TCATAAGCTTGCATTAGCCC+AGG | + | chr1_3:34353746-34353765 | Msa0115480:intron | 45.0% | |
| CATAAGCTTGCATTAGCCCA+GGG | + | chr1_3:34353747-34353766 | Msa0115480:intron | 45.0% | |
| TTGGTCAAGAAAAGGACCCT+GGG | - | chr1_3:34353766-34353785 | None:intergenic | 45.0% | |
| !! | CGTTCAGGTTGGTCAAGAAA+AGG | - | chr1_3:34353774-34353793 | None:intergenic | 45.0% |
| GGAGGGAGTAGATAGTTTCA+AGG | - | chr1_3:34354006-34354025 | None:intergenic | 45.0% | |
| GAATGCGTGAGAAGCTCATA+GGG | - | chr1_3:34354525-34354544 | None:intergenic | 45.0% | |
| AGAATGCGTGAGAAGCTCAT+AGG | - | chr1_3:34354526-34354545 | None:intergenic | 45.0% | |
| GGAAAGGCCCAACAGTAAAA+TGG | + | chr1_3:34354698-34354717 | Msa0115480:intron | 45.0% | |
| CGAAATAGCGAAGTGTGTGT+TGG | - | chr1_3:34354929-34354948 | None:intergenic | 45.0% | |
| ATGGCAGTGCTTTCGCTAAA+TGG | + | chr1_3:34355072-34355091 | Msa0115480:CDS | 45.0% | |
| TGCATGTCAATGAGTGCAAC+AGG | - | chr1_3:34355203-34355222 | None:intergenic | 45.0% | |
| ! | GGGGAAATTTTTCACCTCTC+GGG | - | chr1_3:34355412-34355431 | None:intergenic | 45.0% |
| ! | GGGGGAAATTTTTCACCTCT+CGG | - | chr1_3:34355413-34355432 | None:intergenic | 45.0% |
| GGAAGCTAACCCTGATTCAA+AGG | + | chr1_3:34355743-34355762 | Msa0115480:CDS | 45.0% | |
| !! | TAAGCTGGTGCTGTATGCAT+AGG | + | chr1_3:34356189-34356208 | Msa0115480:intron | 45.0% |
| !! | AAGCTGGTGCTGTATGCATA+GGG | + | chr1_3:34356190-34356209 | Msa0115480:intron | 45.0% |
| ! | GGATCAAGAGGGTTCTGATA+AGG | + | chr1_3:34356307-34356326 | Msa0115480:intron | 45.0% |
| ! | GAGTAGTGGTGACATTTTGG+TGG | + | chr1_3:34356401-34356420 | Msa0115480:intron | 45.0% |
| GCTTATGTGGCAAACCTTTG+GGG | - | chr1_3:34357211-34357230 | None:intergenic | 45.0% | |
| GTGCTTATGTGGCAAACCTT+TGG | - | chr1_3:34357213-34357232 | None:intergenic | 45.0% | |
| TGCCACATAAGCACAAGTTG+TGG | + | chr1_3:34357219-34357238 | Msa0115480:intron | 45.0% | |
| GCCACATAAGCACAAGTTGT+GGG | + | chr1_3:34357220-34357239 | Msa0115480:intron | 45.0% | |
| AAGTTGTGGGCATAAGCAAC+TGG | + | chr1_3:34357233-34357252 | Msa0115480:intron | 45.0% | |
| ATGCAAGTTTCAGGGCAAAC+AGG | - | chr1_3:34357304-34357323 | None:intergenic | 45.0% | |
| GGAATAACAGGACAAATCCC+AGG | - | chr1_3:34357356-34357375 | None:intergenic | 45.0% | |
| GGAAAAATCCCTTCGAGTCT+AGG | - | chr1_3:34357419-34357438 | None:intergenic | 45.0% | |
| TGTAGAAGGGTCAAGCTTGA+AGG | - | chr1_3:34357543-34357562 | None:intergenic | 45.0% | |
| TATGACAAGCAGCTCTTTGG+AGG | - | chr1_3:34357612-34357631 | None:intergenic | 45.0% | |
| !!! | TTTTTGAAATGGGCTCCTGG+TGG | + | chr1_3:34357893-34357912 | Msa0115480:intron | 45.0% |
| TGGGCTCACTTAAGATTAGC+AGG | + | chr1_3:34358943-34358962 | Msa0115480:intron | 45.0% | |
| GGGCTCACTTAAGATTAGCA+GGG | + | chr1_3:34358944-34358963 | Msa0115480:intron | 45.0% | |
| GGCTCACTTAAGATTAGCAG+GGG | + | chr1_3:34358945-34358964 | Msa0115480:intron | 45.0% | |
| CATCAAGAAGGCTCTATCTG+AGG | + | chr1_3:34358992-34359011 | Msa0115480:intron | 45.0% | |
| ! | AAGGCTCTATCTGAGGTTGA+TGG | + | chr1_3:34358999-34359018 | Msa0115480:intron | 45.0% |
| !! | GGTTGATGGTGATAACTGTC+GGG | + | chr1_3:34359013-34359032 | Msa0115480:intron | 45.0% |
| ! | GGGCATCAGCATTTTGTAGT+AGG | + | chr1_3:34359033-34359052 | Msa0115480:intron | 45.0% |
| !! | ATATCATTATAATATATAAT+AGG | - | chr1_3:34358244-34358263 | None:intergenic | 5.0% |
| AAATTGAGTGCCATGGTCGG+AGG | - | chr1_3:34352086-34352105 | None:intergenic | 50.0% | |
| GGCAAATTGAGTGCCATGGT+CGG | - | chr1_3:34352089-34352108 | None:intergenic | 50.0% | |
| CAGTGGCAAATTGAGTGCCA+TGG | - | chr1_3:34352093-34352112 | None:intergenic | 50.0% | |
| CCTCCTCTTCCACAACAAGT+TGG | - | chr1_3:34352487-34352506 | None:intergenic | 50.0% | |
| !! | CCAACTTGTTGTGGAAGAGG+AGG | + | chr1_3:34352484-34352503 | Msa0115480:CDS | 50.0% |
| GCCTCAAGATGCTGATGGTT+GGG | + | chr1_3:34352517-34352536 | Msa0115480:CDS | 50.0% | |
| CCTCAAGATGCTGATGGTTG+GGG | + | chr1_3:34352518-34352537 | Msa0115480:CDS | 50.0% | |
| GATGGTTGGGGATTCAGTCT+TGG | + | chr1_3:34352530-34352549 | Msa0115480:CDS | 50.0% | |
| !! | CGCACGAGAAAGTATTCAGC+AGG | - | chr1_3:34352988-34353007 | None:intergenic | 50.0% |
| GTATCAAAGCCCCTAGGTGT+TGG | + | chr1_3:34353378-34353397 | Msa0115480:intron | 50.0% | |
| !! | TTTTGGGTGTCAAAGTGGCC+AGG | + | chr1_3:34353619-34353638 | Msa0115480:intron | 50.0% |
| ! | CGTCGAGAGCACATTTGGAT+TGG | - | chr1_3:34353668-34353687 | None:intergenic | 50.0% |
| CTCGACGTCATTCTTGAGAC+TGG | + | chr1_3:34353681-34353700 | Msa0115480:intron | 50.0% | |
| GTTGGTCAAGAAAAGGACCC+TGG | - | chr1_3:34353767-34353786 | None:intergenic | 50.0% | |
| ! | AGCTTCTTGCGCGCCTTATT+CGG | - | chr1_3:34354636-34354655 | None:intergenic | 50.0% |
| TGAAGCGGAACGAGAATCGA+CGG | - | chr1_3:34355033-34355052 | None:intergenic | 50.0% | |
| GTTCTCGTTCGTGCCAAAGA+TGG | + | chr1_3:34355053-34355072 | Msa0115480:CDS | 50.0% | |
| !! | AGCGAAAGCACTGCCATCTT+TGG | - | chr1_3:34355069-34355088 | None:intergenic | 50.0% |
| CTGAAGTGAAGAAACCCGAG+AGG | + | chr1_3:34355395-34355414 | Msa0115480:CDS | 50.0% | |
| !! | AAAGCAGTTGGTGGACGCTT+CGG | - | chr1_3:34355596-34355615 | None:intergenic | 50.0% |
| GTAAGGAAGCTGGTGAGAAG+TGG | + | chr1_3:34355879-34355898 | Msa0115480:CDS | 50.0% | |
| GGCAGAATATGAGAAGGCCA+TGG | + | chr1_3:34356067-34356086 | Msa0115480:CDS | 50.0% | |
| CAGCTTCCTTGTCATCAGAC+TGG | - | chr1_3:34356346-34356365 | None:intergenic | 50.0% | |
| CACACTGAACTGCAGCAAAC+TGG | - | chr1_3:34356897-34356916 | None:intergenic | 50.0% | |
| ! | AAGCATTGTGCTGCTCAAGC+TGG | + | chr1_3:34357055-34357074 | Msa0115480:intron | 50.0% |
| !! | AAACCTTTGGGGCCATGCAA+GGG | - | chr1_3:34357200-34357219 | None:intergenic | 50.0% |
| GCCCACAACTTGTGCTTATG+TGG | - | chr1_3:34357224-34357243 | None:intergenic | 50.0% | |
| TTGTGGGCATAAGCAACTGG+TGG | + | chr1_3:34357236-34357255 | Msa0115480:intron | 50.0% | |
| TTCAGGGCAAACAGGCTATG+TGG | - | chr1_3:34357296-34357315 | None:intergenic | 50.0% | |
| GTCAGTTGCAGAAACTGCAG+TGG | - | chr1_3:34357397-34357416 | None:intergenic | 50.0% | |
| TGCAACTGACCTAGACTCGA+AGG | + | chr1_3:34357407-34357426 | Msa0115480:intron | 50.0% | |
| GCAACTGACCTAGACTCGAA+GGG | + | chr1_3:34357408-34357427 | Msa0115480:intron | 50.0% | |
| CAATTCGCAGTGCAGATGAG+TGG | + | chr1_3:34358489-34358508 | Msa0115480:CDS | 50.0% | |
| ! | AACACGATGGTTTGGCTCCA+CGG | - | chr1_3:34358541-34358560 | None:intergenic | 50.0% |
| ! | TGATAGCGACGACGATGACG+AGG | + | chr1_3:34352307-34352326 | Msa0115480:CDS | 55.0% |
| GGCCTCAAGATGCTGATGGT+TGG | + | chr1_3:34352516-34352535 | Msa0115480:CDS | 55.0% | |
| CCCCAACCATCAGCATCTTG+AGG | - | chr1_3:34352521-34352540 | None:intergenic | 55.0% | |
| CATGAAGGCTGCTGAATGGG+AGG | + | chr1_3:34352682-34352701 | Msa0115480:CDS | 55.0% | |
| AGGCGCGCAAGAAGCTCATA+CGG | + | chr1_3:34354640-34354659 | Msa0115480:intron | 55.0% | |
| GCGCAAGAAGCTCATACGGT+GGG | + | chr1_3:34354644-34354663 | Msa0115480:intron | 55.0% | |
| TCGATTTAAACGCGCGCGAG+CGG | - | chr1_3:34354772-34354791 | None:intergenic | 55.0% | |
| GGCACGAACGAGAACTGAAG+CGG | - | chr1_3:34355048-34355067 | None:intergenic | 55.0% | |
| AGGAAGCTGGTGAGAAGTGG+AGG | + | chr1_3:34355882-34355901 | Msa0115480:CDS | 55.0% | |
| GAAGTGGAGGTCTCTGACTG+AGG | + | chr1_3:34355895-34355914 | Msa0115480:CDS | 55.0% | |
| GGAAGGCCAGTCTGATGACA+AGG | + | chr1_3:34356337-34356356 | Msa0115480:CDS | 55.0% | |
| AACTGCAGCAAACTGGCCAC+TGG | - | chr1_3:34356890-34356909 | None:intergenic | 55.0% | |
| TATCCCTTGCATGGCCCCAA+AGG | + | chr1_3:34357194-34357213 | Msa0115480:intron | 55.0% | |
| !! | CAAACCTTTGGGGCCATGCA+AGG | - | chr1_3:34357201-34357220 | None:intergenic | 55.0% |
| GGCTGTTTGATGTGTGACCG+TGG | + | chr1_3:34358779-34358798 | Msa0115480:intron | 55.0% | |
| ACCGTGGAAGCCATCACCTT+AGG | + | chr1_3:34358795-34358814 | Msa0115480:intron | 55.0% | |
| ! | GCCTAAGGTGATGGCTTCCA+CGG | - | chr1_3:34358799-34358818 | None:intergenic | 55.0% |
| GGAAGCCATCACCTTAGGCT+TGG | + | chr1_3:34358800-34358819 | Msa0115480:intron | 55.0% | |
| CCAAGCCAAGCCTAAGGTGA+TGG | - | chr1_3:34358808-34358827 | None:intergenic | 55.0% | |
| CCATCACCTTAGGCTTGGCT+TGG | + | chr1_3:34358805-34358824 | Msa0115480:intron | 55.0% | |
| !! | TCACCTTAGGCTTGGCTTGG+TGG | + | chr1_3:34358808-34358827 | Msa0115480:intron | 55.0% |
| !! | CACCTTAGGCTTGGCTTGGT+GGG | + | chr1_3:34358809-34358828 | Msa0115480:intron | 55.0% |
| AACCCACCAAGCCAAGCCTA+AGG | - | chr1_3:34358814-34358833 | None:intergenic | 55.0% | |
| GGCTGCCTAGTGTTCTCTGC+TGG | - | chr1_3:34352062-34352081 | None:intergenic | 60.0% | |
| TTGAGTGCCATGGTCGGAGG+AGG | - | chr1_3:34352083-34352102 | None:intergenic | 60.0% | |
| CGCGCAAGAAGCTCATACGG+TGG | + | chr1_3:34354643-34354662 | Msa0115480:intron | 60.0% | |
| GACAAGGAAGCTGCTGCTGC+AGG | + | chr1_3:34356353-34356372 | Msa0115480:CDS | 60.0% | |
| TAGGCAGCCTCCTCCGACCA+TGG | + | chr1_3:34352073-34352092 | Msa0115480:exon | 65.0% | |
| GGTGGACGCTTCGGCGCATT+AGG | - | chr1_3:34355587-34355606 | None:intergenic | 65.0% | |
| GGAAGCTGCTGCTGCAGGAG+AGG | + | chr1_3:34356358-34356377 | Msa0115480:CDS | 65.0% | |
| AGCTGCTGCTGCAGGAGAGG+TGG | + | chr1_3:34356361-34356380 | Msa0115480:CDS | 65.0% | |
| TGCTGCTGCAGGAGAGGTGG+AGG | + | chr1_3:34356364-34356383 | Msa0115480:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 34352040 | 34359244 | 34352040 | ID=Msa0115480;Name=Msa0115480 |
| chr1_3 | mRNA | 34352040 | 34359244 | 34352040 | ID=Msa0115480-mRNA-1;Parent=Msa0115480;Name=Msa0115480-mRNA-1;_AED=0.25;_eAED=0.25;_QI=52|0.75|0.69|0.92|0.75|0.69|13|0|554 |
| chr1_3 | exon | 34352040 | 34352762 | 34352040 | ID=Msa0115480-mRNA-1:exon:10835;Parent=Msa0115480-mRNA-1 |
| chr1_3 | exon | 34354980 | 34355093 | 34354980 | ID=Msa0115480-mRNA-1:exon:10836;Parent=Msa0115480-mRNA-1 |
| chr1_3 | exon | 34355178 | 34355260 | 34355178 | ID=Msa0115480-mRNA-1:exon:10837;Parent=Msa0115480-mRNA-1 |
| chr1_3 | exon | 34355371 | 34355416 | 34355371 | ID=Msa0115480-mRNA-1:exon:10838;Parent=Msa0115480-mRNA-1 |
| chr1_3 | exon | 34355514 | 34355627 | 34355514 | ID=Msa0115480-mRNA-1:exon:10839;Parent=Msa0115480-mRNA-1 |
| chr1_3 | exon | 34355719 | 34355776 | 34355719 | ID=Msa0115480-mRNA-1:exon:10840;Parent=Msa0115480-mRNA-1 |
| chr1_3 | exon | 34355875 | 34355919 | 34355875 | ID=Msa0115480-mRNA-1:exon:10841;Parent=Msa0115480-mRNA-1 |
| chr1_3 | exon | 34356029 | 34356121 | 34356029 | ID=Msa0115480-mRNA-1:exon:10842;Parent=Msa0115480-mRNA-1 |
| chr1_3 | exon | 34356308 | 34356402 | 34356308 | ID=Msa0115480-mRNA-1:exon:10843;Parent=Msa0115480-mRNA-1 |
| chr1_3 | exon | 34358078 | 34358159 | 34358078 | ID=Msa0115480-mRNA-1:exon:10844;Parent=Msa0115480-mRNA-1 |
| chr1_3 | exon | 34358269 | 34358380 | 34358269 | ID=Msa0115480-mRNA-1:exon:10845;Parent=Msa0115480-mRNA-1 |
| chr1_3 | exon | 34358489 | 34358616 | 34358489 | ID=Msa0115480-mRNA-1:exon:10846;Parent=Msa0115480-mRNA-1 |
| chr1_3 | exon | 34359221 | 34359244 | 34359221 | ID=Msa0115480-mRNA-1:exon:10847;Parent=Msa0115480-mRNA-1 |
| chr1_3 | five_prime_UTR | 34352040 | 34352091 | 34352040 | ID=Msa0115480-mRNA-1:five_prime_utr;Parent=Msa0115480-mRNA-1 |
| chr1_3 | CDS | 34352092 | 34352762 | 34352092 | ID=Msa0115480-mRNA-1:cds;Parent=Msa0115480-mRNA-1 |
| chr1_3 | CDS | 34354980 | 34355093 | 34354980 | ID=Msa0115480-mRNA-1:cds;Parent=Msa0115480-mRNA-1 |
| chr1_3 | CDS | 34355178 | 34355260 | 34355178 | ID=Msa0115480-mRNA-1:cds;Parent=Msa0115480-mRNA-1 |
| chr1_3 | CDS | 34355371 | 34355416 | 34355371 | ID=Msa0115480-mRNA-1:cds;Parent=Msa0115480-mRNA-1 |
| chr1_3 | CDS | 34355514 | 34355627 | 34355514 | ID=Msa0115480-mRNA-1:cds;Parent=Msa0115480-mRNA-1 |
| chr1_3 | CDS | 34355719 | 34355776 | 34355719 | ID=Msa0115480-mRNA-1:cds;Parent=Msa0115480-mRNA-1 |
| chr1_3 | CDS | 34355875 | 34355919 | 34355875 | ID=Msa0115480-mRNA-1:cds;Parent=Msa0115480-mRNA-1 |
| chr1_3 | CDS | 34356029 | 34356121 | 34356029 | ID=Msa0115480-mRNA-1:cds;Parent=Msa0115480-mRNA-1 |
| chr1_3 | CDS | 34356308 | 34356402 | 34356308 | ID=Msa0115480-mRNA-1:cds;Parent=Msa0115480-mRNA-1 |
| chr1_3 | CDS | 34358078 | 34358159 | 34358078 | ID=Msa0115480-mRNA-1:cds;Parent=Msa0115480-mRNA-1 |
| chr1_3 | CDS | 34358269 | 34358380 | 34358269 | ID=Msa0115480-mRNA-1:cds;Parent=Msa0115480-mRNA-1 |
| chr1_3 | CDS | 34358489 | 34358616 | 34358489 | ID=Msa0115480-mRNA-1:cds;Parent=Msa0115480-mRNA-1 |
| chr1_3 | CDS | 34359221 | 34359244 | 34359221 | ID=Msa0115480-mRNA-1:cds;Parent=Msa0115480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
