Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117730 | KEH41670.1 | 47.619 | 210 | 70 | 9 | 16 | 208 | 16 | 202 | 2.99e-38 | 150 |
| Msa0117730 | KEH41670.1 | 71.084 | 249 | 44 | 4 | 233 | 472 | 17 | 246 | 8.84e-110 | 336 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117730 | A0A072VU80 | 47.619 | 210 | 70 | 9 | 16 | 208 | 16 | 202 | 1.43e-38 | 150 |
| Msa0117730 | A0A072VU80 | 71.084 | 249 | 44 | 4 | 233 | 472 | 17 | 246 | 4.22e-110 | 336 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0117730 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117730 | MtrunA17_Chr1g0174861 | 71.084 | 249 | 44 | 4 | 233 | 472 | 17 | 246 | 8.13e-114 | 336 |
| Msa0117730 | MtrunA17_Chr1g0174861 | 47.619 | 210 | 70 | 9 | 16 | 208 | 16 | 202 | 2.75e-42 | 150 |
| Msa0117730 | MtrunA17_Chr1g0174871 | 61.390 | 259 | 82 | 6 | 248 | 490 | 29 | 285 | 2.13e-87 | 270 |
| Msa0117730 | MtrunA17_Chr1g0174871 | 69.333 | 225 | 45 | 6 | 1 | 207 | 1 | 219 | 3.59e-85 | 264 |
| Msa0117730 | MtrunA17_Chr1g0169521 | 37.500 | 296 | 128 | 9 | 241 | 489 | 30 | 315 | 5.33e-41 | 149 |
| Msa0117730 | MtrunA17_Chr1g0169521 | 26.582 | 237 | 107 | 9 | 25 | 208 | 37 | 259 | 1.60e-12 | 68.6 |
| Msa0117730 | MtrunA17_Chr1g0169561 | 35.593 | 295 | 133 | 8 | 241 | 488 | 30 | 314 | 4.66e-38 | 141 |
| Msa0117730 | MtrunA17_Chr1g0169561 | 28.270 | 237 | 103 | 10 | 25 | 208 | 37 | 259 | 8.61e-14 | 72.4 |
| Msa0117730 | MtrunA17_Chr1g0174001 | 40.000 | 200 | 86 | 7 | 318 | 489 | 1 | 194 | 9.28e-27 | 107 |
| Msa0117730 | MtrunA17_Chr1g0172961 | 33.891 | 239 | 126 | 9 | 241 | 450 | 23 | 258 | 3.48e-25 | 104 |
| Msa0117730 | MtrunA17_Chr1g0172861 | 32.234 | 273 | 128 | 13 | 241 | 480 | 23 | 271 | 5.76e-23 | 98.6 |
| Msa0117730 | MtrunA17_Chr1g0172861 | 29.897 | 194 | 96 | 9 | 4 | 179 | 11 | 182 | 4.81e-11 | 63.5 |
| Msa0117730 | MtrunA17_Chr7g0214511 | 34.000 | 250 | 110 | 10 | 261 | 489 | 71 | 286 | 2.02e-21 | 94.4 |
| Msa0117730 | MtrunA17_Chr4g0037041 | 43.651 | 126 | 54 | 5 | 240 | 356 | 22 | 139 | 1.51e-19 | 86.7 |
| Msa0117730 | MtrunA17_Chr4g0037041 | 36.232 | 138 | 56 | 6 | 4 | 123 | 11 | 134 | 1.16e-11 | 63.9 |
| Msa0117730 | MtrunA17_Chr5g0448221 | 34.177 | 158 | 73 | 8 | 245 | 378 | 54 | 204 | 7.30e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 92 sgRNAs with CRISPR-Local
Find 317 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTGGTCCCGTATCTTAT+TGG | 0.216824 | 1_3:+39364250 | None:intergenic |
| AGCACCAGCAACTTTCTTAA+AGG | 0.235125 | 1_3:-39364472 | Msa0117730:CDS |
| TCATCTGTCAATGCTCTAAA+TGG | 0.239919 | 1_3:-39369797 | Msa0117730:CDS |
| TACCCTTCTTCGAACCATTT+TGG | 0.254107 | 1_3:+39364329 | None:intergenic |
| AAACAAAATTAAACACTAAA+TGG | 0.270394 | 1_3:+39363826 | None:intergenic |
| ATAATCCCAGCTCCGTTTCT+TGG | 0.289051 | 1_3:+39364234 | None:intergenic |
| GAAGAAAGTTGTTGCCTCTA+TGG | 0.295075 | 1_3:+39369903 | None:intergenic |
| ATGAAATGGCACAGCCAAAA+TGG | 0.332105 | 1_3:-39364343 | Msa0117730:CDS |
| TACCCTTCTTCAAAGCATAT+TGG | 0.334682 | 1_3:+39369756 | None:intergenic |
| GTTCTCTACATTGTTATCAT+TGG | 0.335954 | 1_3:+39363964 | None:intergenic |
| AGAGGCAACAACTTTCTTCT+AGG | 0.336861 | 1_3:-39369899 | Msa0117730:CDS |
| GTTTGAGTAATAAGTCCTTT+TGG | 0.343516 | 1_3:+39364013 | None:intergenic |
| TGAATCACCGTGACTGTAAA+AGG | 0.346155 | 1_3:-39364135 | Msa0117730:CDS |
| GTTCTCTTCATTATCATCAT+TGG | 0.362989 | 1_3:+39369346 | None:intergenic |
| TGCAGAAATGTGGGTGGGAT+TGG | 0.366750 | 1_3:-39369533 | Msa0117730:CDS |
| TTTACCTTTAAGAAAGTTGC+TGG | 0.374533 | 1_3:+39364468 | None:intergenic |
| ATCATTGGAAGCAGATTGAT+TGG | 0.381296 | 1_3:+39369361 | None:intergenic |
| TGTTAACATTGCTGAAATAA+TGG | 0.391363 | 1_3:-39364194 | Msa0117730:CDS |
| AAATACTTTCTCAAATCAAT+TGG | 0.400225 | 1_3:+39369704 | None:intergenic |
| CGATCGCCTAACAACCTTGT+TGG | 0.413787 | 1_3:-39369587 | Msa0117730:CDS |
| AACAAACACAAACATGCTAA+TGG | 0.425038 | 1_3:-39364442 | Msa0117730:CDS |
| GCAGAAATGTGGGTGGGATT+GGG | 0.432815 | 1_3:-39369532 | Msa0117730:CDS |
| TGCCTCTATGGAATGCTTTG+TGG | 0.438332 | 1_3:+39369915 | None:intergenic |
| TTTCGATTTGAATGAGCTAC+TGG | 0.444087 | 1_3:-39363873 | Msa0117730:CDS |
| AATGAAGAGAACAACAATAC+TGG | 0.444824 | 1_3:-39369335 | Msa0117730:intron |
| CTCTACATTGTTATCATTGG+AGG | 0.445625 | 1_3:+39363967 | None:intergenic |
| TGATTTCCAACAAGGTTGTT+AGG | 0.451178 | 1_3:+39369581 | None:intergenic |
| TCATGTTGCTGCAGCAATGC+TGG | 0.457233 | 1_3:-39369621 | Msa0117730:CDS |
| TTCTTGGTCAGATACCTCAT+TGG | 0.458462 | 1_3:+39369677 | None:intergenic |
| CTTTGAATGGACACATGAAA+TGG | 0.459517 | 1_3:-39364357 | Msa0117730:CDS |
| ACGGTGATTCACATTAAGAT+TGG | 0.473501 | 1_3:+39364147 | None:intergenic |
| CAATGGATGGAAACTGATCT+AGG | 0.474117 | 1_3:+39364293 | None:intergenic |
| TGGTGCTATGGAATTGTTTG+TGG | 0.477702 | 1_3:+39364488 | None:intergenic |
| TTGGTCCCGTATCTTATTGG+TGG | 0.478295 | 1_3:+39364253 | None:intergenic |
| CAATTGGTGGAAATTGATCT+AGG | 0.480999 | 1_3:+39369720 | None:intergenic |
| TAAGAAAGTTGCTGGTGCTA+TGG | 0.481986 | 1_3:+39364476 | None:intergenic |
| ATCCGTTTCATCACCTTCAT+CGG | 0.483860 | 1_3:+39363937 | None:intergenic |
| TACTTTCTCAAATCAATTGG+TGG | 0.486384 | 1_3:+39369707 | None:intergenic |
| CAGCCAAAATGGTTCGAAGA+AGG | 0.488255 | 1_3:-39364332 | Msa0117730:CDS |
| GAATGCTTTGTGGCCGCCGA+GGG | 0.493083 | 1_3:+39369925 | None:intergenic |
| CAAATACTTTGTCAGATCAA+TGG | 0.494617 | 1_3:+39364276 | None:intergenic |
| CAGCCAATATGCTTTGAAGA+AGG | 0.501688 | 1_3:-39369759 | Msa0117730:CDS |
| TTGGTCAGATACCTCATTGG+TGG | 0.506716 | 1_3:+39369680 | None:intergenic |
| TTCATGTGTTCTTTGCAGCA+AGG | 0.509354 | 1_3:-39364398 | Msa0117730:CDS |
| TACCGATGAAGGTGATGAAA+CGG | 0.519602 | 1_3:-39363939 | Msa0117730:CDS |
| TGTGCTAGAGAATTCACCTC+TGG | 0.520924 | 1_3:-39364526 | Msa0117730:CDS |
| GAAATCACCGTATCACGAAA+AGG | 0.523436 | 1_3:-39369565 | Msa0117730:CDS |
| CATGCTAATGGTATTAAGAT+CGG | 0.524324 | 1_3:-39364430 | Msa0117730:CDS |
| GATCAAACTTTGCAGAAATG+TGG | 0.524856 | 1_3:-39369543 | Msa0117730:CDS |
| GTGAGATTAAAGATTCCAAA+AGG | 0.530313 | 1_3:-39364028 | Msa0117730:CDS |
| ACATTGTTATCATTGGAGGC+AGG | 0.530674 | 1_3:+39363971 | None:intergenic |
| TTCACCACTGGTAACGCCCT+CGG | 0.552306 | 1_3:-39369941 | Msa0117730:CDS |
| ATCAAACTTTGCAGAAATGT+GGG | 0.554714 | 1_3:-39369542 | Msa0117730:CDS |
| TAAGATACGGGACCAAGAAA+CGG | 0.556029 | 1_3:-39364246 | Msa0117730:CDS |
| TATTTGCCACCAATAAGATA+CGG | 0.556242 | 1_3:-39364259 | Msa0117730:CDS |
| AGCCAAAATGGTTCGAAGAA+GGG | 0.561339 | 1_3:-39364331 | Msa0117730:CDS |
| ATGAAGGTGATGAAACGGAT+GGG | 0.561647 | 1_3:-39363934 | Msa0117730:CDS |
| AACTTTGCAGAAATGTGGGT+GGG | 0.561670 | 1_3:-39369538 | Msa0117730:CDS |
| GCAAAGAACACATGAATGGC+TGG | 0.562308 | 1_3:+39364405 | None:intergenic |
| AAACAATGAAAAGAACAAGT+TGG | 0.564169 | 1_3:-39369435 | Msa0117730:CDS |
| GTAGAGAACAATACCGATGA+AGG | 0.568109 | 1_3:-39363950 | Msa0117730:CDS |
| ACGGGACCAAGAAACGGAGC+TGG | 0.570799 | 1_3:-39364240 | Msa0117730:CDS |
| AGCCAATATGCTTTGAAGAA+GGG | 0.583138 | 1_3:-39369758 | Msa0117730:CDS |
| TTCACCTCTGGTAATGCACT+CGG | 0.587944 | 1_3:-39364514 | Msa0117730:CDS |
| GGAATGCTTTGTGGCCGCCG+AGG | 0.588007 | 1_3:+39369924 | None:intergenic |
| GCAACGAACACATGAATGGT+TGG | 0.590907 | 1_3:+39369832 | None:intergenic |
| AAAAGAACAAGTTGGTGGTG+AGG | 0.597114 | 1_3:-39369427 | Msa0117730:intron |
| AAGATGAAGATCAGAGAGCA+AGG | 0.598147 | 1_3:-39369509 | Msa0117730:CDS |
| CAATGAAAAGAACAGGTTGG+TGG | 0.599420 | 1_3:-39364050 | Msa0117730:CDS |
| CGGGACCAAGAAACGGAGCT+GGG | 0.599731 | 1_3:-39364239 | Msa0117730:CDS |
| CAAAATTAAACACTAAATGG+TGG | 0.600626 | 1_3:+39363829 | None:intergenic |
| TACTTTGTCAGATCAATGGA+TGG | 0.603001 | 1_3:+39364280 | None:intergenic |
| TGAAGGTGATGAAACGGATG+GGG | 0.603593 | 1_3:-39363933 | Msa0117730:CDS |
| ATTTGCCACCAATAAGATAC+GGG | 0.609267 | 1_3:-39364258 | Msa0117730:CDS |
| GCCGCCGAGGGCGTTACCAG+TGG | 0.610498 | 1_3:+39369937 | None:intergenic |
| TGTGACAGAGAATTCACCAC+TGG | 0.614086 | 1_3:-39369953 | Msa0117730:CDS |
| GATGAAGGTGATGAAACGGA+TGG | 0.616100 | 1_3:-39363935 | Msa0117730:CDS |
| CAATGAAAAGAACAAGTTGG+TGG | 0.617009 | 1_3:-39369432 | Msa0117730:CDS |
| AAACAATGAAAAGAACAGGT+TGG | 0.620052 | 1_3:-39364053 | Msa0117730:CDS |
| TGATACGGTGATTTCCAACA+AGG | 0.635089 | 1_3:+39369573 | None:intergenic |
| AAACTTTGCAGAAATGTGGG+TGG | 0.635743 | 1_3:-39369539 | Msa0117730:CDS |
| GAAAGTATTTGCCACCAATG+AGG | 0.638748 | 1_3:-39369691 | Msa0117730:intron |
| TGCTGCAAAGAACACATGAA+TGG | 0.640126 | 1_3:+39364401 | None:intergenic |
| GGCCACAAAGCATTCCATAG+AGG | 0.645608 | 1_3:-39369917 | Msa0117730:CDS |
| TGCTGCAACGAACACATGAA+TGG | 0.655011 | 1_3:+39369828 | None:intergenic |
| TAACATTGCTGAAATAATGG+TGG | 0.655107 | 1_3:-39364191 | Msa0117730:CDS |
| GCCGCCGAGTGCATTACCAG+AGG | 0.670268 | 1_3:+39364510 | None:intergenic |
| ACCACTGGTAACGCCCTCGG+CGG | 0.680554 | 1_3:-39369938 | Msa0117730:CDS |
| GAAAATGAGAAACATCAACA+AGG | 0.726705 | 1_3:-39364574 | Msa0117730:CDS |
| ACCTCTGGTAATGCACTCGG+CGG | 0.742189 | 1_3:-39364511 | Msa0117730:CDS |
| GATGTGAAGATCAATGAACA+AGG | 0.760498 | 1_3:-39364082 | Msa0117730:CDS |
| GTGAAGATCAATGAACAAGG+TGG | 0.773369 | 1_3:-39364079 | Msa0117730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATAACTATTTTTTTGTT+TGG | - | chr1_3:39365290-39365309 | Msa0117730:intron | 10.0% |
| !! | TAAAGTGTAAAATAAATATT+TGG | + | chr1_3:39366925-39366944 | None:intergenic | 10.0% |
| !!! | TTTTATCAGTTTAATTTATT+TGG | - | chr1_3:39367178-39367197 | Msa0117730:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTTTTGAG+AGG | - | chr1_3:39368219-39368238 | Msa0117730:intron | 10.0% |
| !!! | ATATATATATTTTTGATGAA+TGG | + | chr1_3:39368403-39368422 | None:intergenic | 10.0% |
| !! | GAAAATAAAAAAAAAAATAC+GGG | - | chr1_3:39368619-39368638 | Msa0117730:intron | 10.0% |
| !!! | AATAAAAGTTTTTTTTTTGA+AGG | + | chr1_3:39368801-39368820 | None:intergenic | 10.0% |
| !! | TCTTATAAATGAATATTAAA+CGG | - | chr1_3:39368891-39368910 | Msa0117730:intron | 10.0% |
| !! | TTCAATCTAATTTATCTATA+GGG | - | chr1_3:39365940-39365959 | Msa0117730:intron | 15.0% |
| !! | AGAATTGATAAAATTTAGTT+GGG | + | chr1_3:39366128-39366147 | None:intergenic | 15.0% |
| !! | TATTAAAAATTCACATTGAA+TGG | - | chr1_3:39366623-39366642 | Msa0117730:intron | 15.0% |
| !! | TAGATTAAACCATAAAAAAT+TGG | - | chr1_3:39367349-39367368 | Msa0117730:intron | 15.0% |
| !! | TATTTGTAAAAGATTCAATT+GGG | + | chr1_3:39368093-39368112 | None:intergenic | 15.0% |
| !! | ATATTTGTAAAAGATTCAAT+TGG | + | chr1_3:39368094-39368113 | None:intergenic | 15.0% |
| !! | TAATAGAATAAATGAGAATA+AGG | - | chr1_3:39368428-39368447 | Msa0117730:intron | 15.0% |
| !! | AATAGAATAAATGAGAATAA+GGG | - | chr1_3:39368429-39368448 | Msa0117730:intron | 15.0% |
| !! | TTTCTCATAAATTATTAAGA+TGG | - | chr1_3:39368493-39368512 | Msa0117730:intron | 15.0% |
| !! | ATTGACGTAATAATTTAATT+TGG | + | chr1_3:39368984-39369003 | None:intergenic | 15.0% |
| !!! | TATTAATAGGGTTTTTTTAT+TGG | + | chr1_3:39369096-39369115 | None:intergenic | 15.0% |
| !! | AAACATAAAAGAAAAGATAT+CGG | + | chr1_3:39369130-39369149 | None:intergenic | 15.0% |
| !! | AAATACTTTCTCAAATCAAT+TGG | + | chr1_3:39364192-39364211 | None:intergenic | 20.0% |
| !! | AAACAAAAAGAAACACTAAT+GGG | + | chr1_3:39364769-39364788 | None:intergenic | 20.0% |
| !! | AAAACAAAAAGAAACACTAA+TGG | + | chr1_3:39364770-39364789 | None:intergenic | 20.0% |
| !!! | TTCTTTTTGTTTTTAAGTGA+AGG | - | chr1_3:39364777-39364796 | Msa0117730:intron | 20.0% |
| !! | TTCAAATTAGTGTGAAAATA+TGG | - | chr1_3:39365096-39365115 | Msa0117730:intron | 20.0% |
| !!! | AATCTTCTGTATTTTTCAAA+TGG | + | chr1_3:39365164-39365183 | None:intergenic | 20.0% |
| !! | TCCATGAATAATAAATTTGA+GGG | - | chr1_3:39365187-39365206 | Msa0117730:intron | 20.0% |
| !!! | CATAAAAAGACTAGTTATTA+GGG | + | chr1_3:39365237-39365256 | None:intergenic | 20.0% |
| !!! | TCATAAAAAGACTAGTTATT+AGG | + | chr1_3:39365238-39365257 | None:intergenic | 20.0% |
| !!! | AATTGACTTGAAAATATTTC+AGG | - | chr1_3:39365401-39365420 | Msa0117730:intron | 20.0% |
| !! | CTTCAATCTAATTTATCTAT+AGG | - | chr1_3:39365939-39365958 | Msa0117730:intron | 20.0% |
| !! | GAGAATTGATAAAATTTAGT+TGG | + | chr1_3:39366129-39366148 | None:intergenic | 20.0% |
| !! | TTTGATATATTGTCTTTCTT+TGG | - | chr1_3:39366288-39366307 | Msa0117730:intron | 20.0% |
| !! | GATTTAGTTGTTTATACATA+CGG | + | chr1_3:39366588-39366607 | None:intergenic | 20.0% |
| !! | GTAAAATAAATATTTGGCAA+TGG | + | chr1_3:39366919-39366938 | None:intergenic | 20.0% |
| !! | TTATTTATTTGACAAGCTAT+TGG | - | chr1_3:39366979-39366998 | Msa0117730:intron | 20.0% |
| !! | AAAAAACAAAGATATTTGCA+TGG | + | chr1_3:39367122-39367141 | None:intergenic | 20.0% |
| !! | TTAAACTGATAAAACATTGT+GGG | + | chr1_3:39367172-39367191 | None:intergenic | 20.0% |
| !! | ATTAAACTGATAAAACATTG+TGG | + | chr1_3:39367173-39367192 | None:intergenic | 20.0% |
| !!! | CAACATTTTAAATTTGAGTT+GGG | - | chr1_3:39367273-39367292 | Msa0117730:intron | 20.0% |
| !!! | AACATTTTAAATTTGAGTTG+GGG | - | chr1_3:39367274-39367293 | Msa0117730:intron | 20.0% |
| !!! | TTTTTTTCTTTTTTTTGTGC+AGG | + | chr1_3:39367375-39367394 | None:intergenic | 20.0% |
| !!! | TGACCAAATTTTTTATTTCT+TGG | + | chr1_3:39367409-39367428 | None:intergenic | 20.0% |
| !! | ACTAAAAAACAAATTAAGTG+CGG | + | chr1_3:39367550-39367569 | None:intergenic | 20.0% |
| !! | GTTATTTACACACAATATTT+GGG | + | chr1_3:39367895-39367914 | None:intergenic | 20.0% |
| !!! | TGTTATTTACACACAATATT+TGG | + | chr1_3:39367896-39367915 | None:intergenic | 20.0% |
| !! | ATTGTAAATAAAGTCGAAAA+TGG | - | chr1_3:39368030-39368049 | Msa0117730:intron | 20.0% |
| !! | ACAATTGTGAAGATTAAAAT+GGG | + | chr1_3:39368065-39368084 | None:intergenic | 20.0% |
| !! | AACAATTGTGAAGATTAAAA+TGG | + | chr1_3:39368066-39368085 | None:intergenic | 20.0% |
| !!! | TCTTAATTTTATTTCCTGTT+TGG | + | chr1_3:39368467-39368486 | None:intergenic | 20.0% |
| !!! | ATCAACTTTTCTTTTTCTTT+TGG | + | chr1_3:39368541-39368560 | None:intergenic | 20.0% |
| !!! | TAGTGAGACTTATTTTAATT+AGG | - | chr1_3:39368735-39368754 | Msa0117730:intron | 20.0% |
| !! | TTTATAAGAGAGATATACAT+TGG | + | chr1_3:39368880-39368899 | None:intergenic | 20.0% |
| !! | TATAAATGAATATTAAACGG+CGG | - | chr1_3:39368894-39368913 | Msa0117730:intron | 20.0% |
| !!! | ATTACGTCAATTTTTTTTGA+AGG | - | chr1_3:39368993-39369012 | Msa0117730:intron | 20.0% |
| !! | AAATTATTATGTCATGTAGT+AGG | - | chr1_3:39369017-39369036 | Msa0117730:intron | 20.0% |
| !! | GGTATCACTTATTATTAATA+GGG | + | chr1_3:39369108-39369127 | None:intergenic | 20.0% |
| !! | AACATAAAAGAAAAGATATC+GGG | + | chr1_3:39369129-39369148 | None:intergenic | 20.0% |
| ! | AAACAATGAAAAGAACAAGT+TGG | - | chr1_3:39364458-39364477 | Msa0117730:CDS | 25.0% |
| !! | GTTAATCTATTTTCACCTTT+TGG | - | chr1_3:39365011-39365030 | Msa0117730:intron | 25.0% |
| ! | GTCCATGAATAATAAATTTG+AGG | - | chr1_3:39365186-39365205 | Msa0117730:intron | 25.0% |
| ! | ACCCTCAAATTTATTATTCA+TGG | + | chr1_3:39365191-39365210 | None:intergenic | 25.0% |
| !! | TAGTTATTAGGGCATTAAAT+TGG | + | chr1_3:39365226-39365245 | None:intergenic | 25.0% |
| ! | ATGAATTGAATTGAATGTAG+AGG | - | chr1_3:39365254-39365273 | Msa0117730:intron | 25.0% |
| ! | AACACTTCAATGACAAATAA+TGG | - | chr1_3:39365545-39365564 | Msa0117730:intron | 25.0% |
| !! | ATTTTCTATTGTACTTAGCT+AGG | + | chr1_3:39365609-39365628 | None:intergenic | 25.0% |
| !! | GTTGTCATTTCACTAATTAT+TGG | + | chr1_3:39365636-39365655 | None:intergenic | 25.0% |
| ! | TCAGATGATAGATTTACTAA+AGG | - | chr1_3:39365713-39365732 | Msa0117730:intron | 25.0% |
| ! | TAGAAGAATAATTCTCTAGT+GGG | - | chr1_3:39365788-39365807 | Msa0117730:intron | 25.0% |
| ! | TTCAAGAATGAGTACAATTA+TGG | + | chr1_3:39365853-39365872 | None:intergenic | 25.0% |
| ! | TTGAAGAAAGCTTCAATTAT+GGG | + | chr1_3:39365925-39365944 | None:intergenic | 25.0% |
| ! | ATTGAAGAAAGCTTCAATTA+TGG | + | chr1_3:39365926-39365945 | None:intergenic | 25.0% |
| !!! | TTATTGCCCTTCATATTTTT+TGG | - | chr1_3:39366008-39366027 | Msa0117730:intron | 25.0% |
| ! | TGGAATCCAAAAAATATGAA+GGG | + | chr1_3:39366017-39366036 | None:intergenic | 25.0% |
| ! | TTGGAATCCAAAAAATATGA+AGG | + | chr1_3:39366018-39366037 | None:intergenic | 25.0% |
| ! | AAACTTTGTAACTTCAACAT+TGG | + | chr1_3:39366037-39366056 | None:intergenic | 25.0% |
| ! | TTGATAAAATTTAGTTGGGA+GGG | + | chr1_3:39366124-39366143 | None:intergenic | 25.0% |
| ! | ATTGATAAAATTTAGTTGGG+AGG | + | chr1_3:39366125-39366144 | None:intergenic | 25.0% |
| !! | TTTTATCAATTCTCAAGAGT+CGG | - | chr1_3:39366135-39366154 | Msa0117730:intron | 25.0% |
| ! | TGAATTAATTTCAGTGGAAA+AGG | + | chr1_3:39366199-39366218 | None:intergenic | 25.0% |
| ! | CAACAATGAATTAATTTCAG+TGG | + | chr1_3:39366205-39366224 | None:intergenic | 25.0% |
| !!! | AATTTTGATGTACAAAACGA+AGG | + | chr1_3:39366238-39366257 | None:intergenic | 25.0% |
| !!! | AGAATTTTTCAAGATACAGT+TGG | + | chr1_3:39366534-39366553 | None:intergenic | 25.0% |
| ! | ATATTTAGTGATACATGATC+TGG | + | chr1_3:39366699-39366718 | None:intergenic | 25.0% |
| !! | AAAACTAAAAGTGCATTTGA+CGG | + | chr1_3:39366732-39366751 | None:intergenic | 25.0% |
| !!! | TCAAATGCACTTTTAGTTTT+AGG | - | chr1_3:39366732-39366751 | Msa0117730:intron | 25.0% |
| !!! | CACTTTTAGTTTTAGGTTTT+TGG | - | chr1_3:39366739-39366758 | Msa0117730:intron | 25.0% |
| ! | AATGGATAACATAATACGAA+TGG | + | chr1_3:39367080-39367099 | None:intergenic | 25.0% |
| !!! | TATTGGTTTGAAACTAAGTT+TGG | - | chr1_3:39367231-39367250 | Msa0117730:intron | 25.0% |
| !! | GCAACATTTTAAATTTGAGT+TGG | - | chr1_3:39367272-39367291 | Msa0117730:intron | 25.0% |
| ! | GAGCCAAGAAATAAAAAATT+TGG | - | chr1_3:39367403-39367422 | Msa0117730:intron | 25.0% |
| !!! | TAGTAGTACGTATTTTGTTT+TGG | - | chr1_3:39367458-39367477 | Msa0117730:intron | 25.0% |
| !!! | ATTTTGTTTTGGCAATAAGA+TGG | - | chr1_3:39367469-39367488 | Msa0117730:intron | 25.0% |
| !!! | TCTTTTTCGACAAAAACATA+TGG | - | chr1_3:39367616-39367635 | Msa0117730:intron | 25.0% |
| !!! | ACTCTTTTTTTCCTAACATA+TGG | - | chr1_3:39367667-39367686 | Msa0117730:intron | 25.0% |
| ! | TTATTGAGTTAAATCAACGT+AGG | + | chr1_3:39367765-39367784 | None:intergenic | 25.0% |
| ! | CATTTCCTTTCAAATTTCTT+AGG | - | chr1_3:39367940-39367959 | Msa0117730:intron | 25.0% |
| !!! | GACTTTTGACTTAACAAATA+GGG | + | chr1_3:39368264-39368283 | None:intergenic | 25.0% |
| !!! | TGACTTTTGACTTAACAAAT+AGG | + | chr1_3:39368265-39368284 | None:intergenic | 25.0% |
| !!! | GGAATTTTTTTTTACCAAAC+AGG | - | chr1_3:39368450-39368469 | Msa0117730:intron | 25.0% |
| !! | ACTTTTCTTTTTCTTTTGGT+TGG | + | chr1_3:39368537-39368556 | None:intergenic | 25.0% |
| ! | CTCACTAATCTATATCATAT+GGG | + | chr1_3:39368722-39368741 | None:intergenic | 25.0% |
| ! | TCTCACTAATCTATATCATA+TGG | + | chr1_3:39368723-39368742 | None:intergenic | 25.0% |
| ! | GGGTATCACTTATTATTAAT+AGG | + | chr1_3:39369109-39369128 | None:intergenic | 25.0% |
| ! | TTAGTGCAATGAAATTGAAA+GGG | + | chr1_3:39369200-39369219 | None:intergenic | 25.0% |
| ! | ATTAGTGCAATGAAATTGAA+AGG | + | chr1_3:39369201-39369220 | None:intergenic | 25.0% |
| ! | TGTTAACATTGCTGAAATAA+TGG | - | chr1_3:39369699-39369718 | Msa0117730:CDS | 25.0% |
| ! | GTAAAAACAATGAAAAGAAC+AGG | - | chr1_3:39369836-39369855 | Msa0117730:intron | 25.0% |
| !! | AATTAGAGTCACACATTTTT+CGG | - | chr1_3:39369995-39370014 | Msa0117730:CDS | 25.0% |
| !!! | TGATCAACAACACTCTTTTT+TGG | + | chr1_3:39363892-39363911 | None:intergenic | 30.0% |
| !! | AAAAAGAGTGTTGTTGATCA+TGG | - | chr1_3:39363892-39363911 | Msa0117730:CDS | 30.0% |
| AACAAAGAAAAACATGCTGA+TGG | - | chr1_3:39364024-39364043 | Msa0117730:CDS | 30.0% | |
| TACTTTCTCAAATCAATTGG+TGG | + | chr1_3:39364189-39364208 | None:intergenic | 30.0% | |
| ATCAAACTTTGCAGAAATGT+GGG | - | chr1_3:39364351-39364370 | Msa0117730:CDS | 30.0% | |
| ! | TTTTGAATGACAAGGCTATT+CGG | + | chr1_3:39364501-39364520 | None:intergenic | 30.0% |
| ! | CTTGTGATTTTTGAATGACA+AGG | + | chr1_3:39364509-39364528 | None:intergenic | 30.0% |
| GTTCTCTTCATTATCATCAT+TGG | + | chr1_3:39364550-39364569 | None:intergenic | 30.0% | |
| AATGAAGAGAACAACAATAC+TGG | - | chr1_3:39364558-39364577 | Msa0117730:CDS | 30.0% | |
| GAAATGAAATTCTGCTAGTT+TGG | - | chr1_3:39364861-39364880 | Msa0117730:intron | 30.0% | |
| TTGTTGTGATAATTTCATCG+TGG | - | chr1_3:39364929-39364948 | Msa0117730:intron | 30.0% | |
| AATATGGAGTTGAATGTTGA+TGG | - | chr1_3:39365112-39365131 | Msa0117730:intron | 30.0% | |
| ACTTCAATGACAAATAATGG+TGG | - | chr1_3:39365548-39365567 | Msa0117730:intron | 30.0% | |
| TTTGATTGTAACTACTCTTG+TGG | - | chr1_3:39365752-39365771 | Msa0117730:intron | 30.0% | |
| GTAGAAGAATAATTCTCTAG+TGG | - | chr1_3:39365787-39365806 | Msa0117730:intron | 30.0% | |
| AGAAGAATAATTCTCTAGTG+GGG | - | chr1_3:39365789-39365808 | Msa0117730:intron | 30.0% | |
| AATTATGGGGCAATATCATA+TGG | + | chr1_3:39365911-39365930 | None:intergenic | 30.0% | |
| TGAAGAAAGCTTCAATTATG+GGG | + | chr1_3:39365924-39365943 | None:intergenic | 30.0% | |
| ACTCATGAAGTATAACTCTT+TGG | - | chr1_3:39365985-39366004 | Msa0117730:intron | 30.0% | |
| AATTAGTCACCACTAAATAG+AGG | + | chr1_3:39366063-39366082 | None:intergenic | 30.0% | |
| ! | TAGTGGTGACTAATTTTTGA+CGG | - | chr1_3:39366068-39366087 | Msa0117730:intron | 30.0% |
| TTTATCAATTCTCAAGAGTC+GGG | - | chr1_3:39366136-39366155 | Msa0117730:intron | 30.0% | |
| TGTACAAAACGAAGGAAATT+AGG | + | chr1_3:39366230-39366249 | None:intergenic | 30.0% | |
| AATGGAAATAAGAGCTTATC+AGG | - | chr1_3:39366641-39366660 | Msa0117730:intron | 30.0% | |
| CTTAAGTACATGCATGATAT+TGG | - | chr1_3:39367214-39367233 | Msa0117730:intron | 30.0% | |
| TAAGTGCGGTAAATTATAAG+TGG | + | chr1_3:39367536-39367555 | None:intergenic | 30.0% | |
| ! | AGACTAACTTTGAAAAGTTG+TGG | + | chr1_3:39367588-39367607 | None:intergenic | 30.0% |
| !! | TGTTTTTGTCGAAAAAGATG+AGG | + | chr1_3:39367614-39367633 | None:intergenic | 30.0% |
| ATATGGTGATACTCTCTTAT+TGG | - | chr1_3:39367684-39367703 | Msa0117730:intron | 30.0% | |
| TATGGTGATACTCTCTTATT+GGG | - | chr1_3:39367685-39367704 | Msa0117730:intron | 30.0% | |
| TCCTTTCAAATTTCTTAGGA+TGG | - | chr1_3:39367944-39367963 | Msa0117730:intron | 30.0% | |
| ACCATCCTAAGAAATTTGAA+AGG | + | chr1_3:39367948-39367967 | None:intergenic | 30.0% | |
| TCAAATTTCTTAGGATGGTA+AGG | - | chr1_3:39367949-39367968 | Msa0117730:intron | 30.0% | |
| TCTCACCATTGTAAAAATGT+GGG | + | chr1_3:39368171-39368190 | None:intergenic | 30.0% | |
| TTCTCACCATTGTAAAAATG+TGG | + | chr1_3:39368172-39368191 | None:intergenic | 30.0% | |
| TTTAATTAGGACGCTGTTAA+TGG | - | chr1_3:39368748-39368767 | Msa0117730:intron | 30.0% | |
| TTAAACGGCGGAAAAATAAA+TGG | - | chr1_3:39368906-39368925 | Msa0117730:intron | 30.0% | |
| TGAATAGAATGATGAGAAGA+AGG | + | chr1_3:39369268-39369287 | None:intergenic | 30.0% | |
| GAAAATGAGAAACATCAACA+AGG | - | chr1_3:39369319-39369338 | Msa0117730:intron | 30.0% | |
| ! | TTTACCTTTAAGAAAGTTGC+TGG | + | chr1_3:39369428-39369447 | None:intergenic | 30.0% |
| AACAAACACAAACATGCTAA+TGG | - | chr1_3:39369451-39369470 | Msa0117730:CDS | 30.0% | |
| CATGCTAATGGTATTAAGAT+CGG | - | chr1_3:39369463-39369482 | Msa0117730:CDS | 30.0% | |
| !! | TCATCGAAAAAAGCTTTGAA+TGG | - | chr1_3:39369523-39369542 | Msa0117730:CDS | 30.0% |
| CAAATACTTTGTCAGATCAA+TGG | + | chr1_3:39369620-39369639 | None:intergenic | 30.0% | |
| TATTTGCCACCAATAAGATA+CGG | - | chr1_3:39369634-39369653 | Msa0117730:CDS | 30.0% | |
| TAACATTGCTGAAATAATGG+TGG | - | chr1_3:39369702-39369721 | Msa0117730:CDS | 30.0% | |
| AAACAATGAAAAGAACAGGT+TGG | - | chr1_3:39369840-39369859 | Msa0117730:intron | 30.0% | |
| GTGAGATTAAAGATTCCAAA+AGG | - | chr1_3:39369865-39369884 | Msa0117730:CDS | 30.0% | |
| ! | GTTTGAGTAATAAGTCCTTT+TGG | + | chr1_3:39369883-39369902 | None:intergenic | 30.0% |
| GTTCTCTACATTGTTATCAT+TGG | + | chr1_3:39369932-39369951 | None:intergenic | 30.0% | |
| ! | ATTAGAGTCACACATTTTTC+GGG | - | chr1_3:39369996-39370015 | Msa0117730:CDS | 30.0% |
| !!! | CAACACTCTTTTTTGGTTTG+TGG | + | chr1_3:39363885-39363904 | None:intergenic | 35.0% |
| ! | TCATCTGTCAATGCTCTAAA+TGG | - | chr1_3:39364096-39364115 | Msa0117730:CDS | 35.0% |
| !! | AGCCAATATGCTTTGAAGAA+GGG | - | chr1_3:39364135-39364154 | Msa0117730:CDS | 35.0% |
| TACCCTTCTTCAAAGCATAT+TGG | + | chr1_3:39364140-39364159 | None:intergenic | 35.0% | |
| CAATTGGTGGAAATTGATCT+AGG | + | chr1_3:39364176-39364195 | None:intergenic | 35.0% | |
| TGATTTCCAACAAGGTTGTT+AGG | + | chr1_3:39364315-39364334 | None:intergenic | 35.0% | |
| ! | GTTTGATCCTTTTCGTGATA+CGG | + | chr1_3:39364338-39364357 | None:intergenic | 35.0% |
| GATCAAACTTTGCAGAAATG+TGG | - | chr1_3:39364350-39364369 | Msa0117730:CDS | 35.0% | |
| ! | CAATGAAAAGAACAAGTTGG+TGG | - | chr1_3:39364461-39364480 | Msa0117730:CDS | 35.0% |
| ATCATTGGAAGCAGATTGAT+TGG | + | chr1_3:39364535-39364554 | None:intergenic | 35.0% | |
| TGAAGATGATGAAGCAAATG+AGG | - | chr1_3:39364659-39364678 | Msa0117730:intron | 35.0% | |
| TTTAACCCCAATTCATGAGT+TGG | + | chr1_3:39364687-39364706 | None:intergenic | 35.0% | |
| CAAAAAGAAACACTAATGGG+CGG | + | chr1_3:39364766-39364785 | None:intergenic | 35.0% | |
| ! | ATGAAATTCTGCTAGTTTGG+TGG | - | chr1_3:39364864-39364883 | Msa0117730:intron | 35.0% |
| AAGATTCAGACAGATCCAAA+AGG | + | chr1_3:39365029-39365048 | None:intergenic | 35.0% | |
| ! | CATTGAAGTGTTTCTTAGCT+TGG | + | chr1_3:39365537-39365556 | None:intergenic | 35.0% |
| ! | ATGACAAATAATGGTGGTGA+TGG | - | chr1_3:39365554-39365573 | Msa0117730:intron | 35.0% |
| GTAAATCTATCATCTGATGC+TGG | + | chr1_3:39365710-39365729 | None:intergenic | 35.0% | |
| GAAACTTTGCATAGAAGAAG+AGG | - | chr1_3:39365815-39365834 | Msa0117730:intron | 35.0% | |
| !! | AGAAATCTTTGACTTGCAGA+AGG | - | chr1_3:39365872-39365891 | Msa0117730:intron | 35.0% |
| AAGTTTCCACCTCTATTTAG+TGG | - | chr1_3:39366051-39366070 | Msa0117730:intron | 35.0% | |
| ! | AGTGGTGACTAATTTTTGAC+GGG | - | chr1_3:39366069-39366088 | Msa0117730:intron | 35.0% |
| TTATCAATTCTCAAGAGTCG+GGG | - | chr1_3:39366137-39366156 | Msa0117730:intron | 35.0% | |
| CTGCACACATATATTGTCTT+TGG | - | chr1_3:39366264-39366283 | Msa0117730:intron | 35.0% | |
| CTGTGCGTGAATTTATTACT+AGG | + | chr1_3:39366314-39366333 | None:intergenic | 35.0% | |
| CTAGTAATAAATTCACGCAC+AGG | - | chr1_3:39366312-39366331 | Msa0117730:intron | 35.0% | |
| CACTTTGCAAATGCAACATT+TGG | - | chr1_3:39366351-39366370 | Msa0117730:intron | 35.0% | |
| TAGAGCAATGCTATATCTCT+AGG | - | chr1_3:39366386-39366405 | Msa0117730:intron | 35.0% | |
| GCACTATTTGCCACAATTTA+AGG | - | chr1_3:39366458-39366477 | Msa0117730:intron | 35.0% | |
| CTATTTGCCACAATTTAAGG+AGG | - | chr1_3:39366461-39366480 | Msa0117730:intron | 35.0% | |
| ATTTGGCAATGGAATTTCGA+TGG | + | chr1_3:39366908-39366927 | None:intergenic | 35.0% | |
| ! | ATTGGTTCTCTACAAGCTAT+TGG | - | chr1_3:39366997-39367016 | Msa0117730:intron | 35.0% |
| AATGGTTGCTTGAAAAGGTT+CGG | + | chr1_3:39367062-39367081 | None:intergenic | 35.0% | |
| ATACGAATGGTTGCTTGAAA+AGG | + | chr1_3:39367067-39367086 | None:intergenic | 35.0% | |
| !!! | TTGTGCAGGCCAATTTTTTA+TGG | + | chr1_3:39367361-39367380 | None:intergenic | 35.0% |
| !! | AGAGAGTATCACCATATGTT+AGG | + | chr1_3:39367681-39367700 | None:intergenic | 35.0% |
| AAGAAGTAAGTGAGAGATAC+AGG | - | chr1_3:39367854-39367873 | Msa0117730:intron | 35.0% | |
| AGAAGTAAGTGAGAGATACA+GGG | - | chr1_3:39367855-39367874 | Msa0117730:intron | 35.0% | |
| ! | AGTCTATGACGTTTTCAAAG+TGG | - | chr1_3:39368120-39368139 | Msa0117730:intron | 35.0% |
| ! | GTAGTCCCACATTTTTACAA+TGG | - | chr1_3:39368163-39368182 | Msa0117730:intron | 35.0% |
| TTCTCATATTCTGCAACACT+CGG | - | chr1_3:39368645-39368664 | Msa0117730:intron | 35.0% | |
| CTCACTCAAAAATGGGTATA+AGG | + | chr1_3:39368695-39368714 | None:intergenic | 35.0% | |
| !! | TGATCAACAGCATTGCTTTT+TGG | + | chr1_3:39369298-39369317 | None:intergenic | 35.0% |
| CTTTGAATGGACACATGAAA+TGG | - | chr1_3:39369536-39369555 | Msa0117730:CDS | 35.0% | |
| TACTTTGTCAGATCAATGGA+TGG | + | chr1_3:39369616-39369635 | None:intergenic | 35.0% | |
| ATTTGCCACCAATAAGATAC+GGG | - | chr1_3:39369635-39369654 | Msa0117730:CDS | 35.0% | |
| ACGGTGATTCACATTAAGAT+TGG | + | chr1_3:39369749-39369768 | None:intergenic | 35.0% | |
| ! | GTTTCATCCTTTTACAGTCA+CGG | + | chr1_3:39369768-39369787 | None:intergenic | 35.0% |
| GATGTGAAGATCAATGAACA+AGG | - | chr1_3:39369811-39369830 | Msa0117730:intron | 35.0% | |
| CTCTACATTGTTATCATTGG+AGG | + | chr1_3:39369929-39369948 | None:intergenic | 35.0% | |
| ! | TTTCGATTTGAATGAGCTAC+TGG | - | chr1_3:39370020-39370039 | Msa0117730:CDS | 35.0% |
| GAAGAAAGTTGTTGCCTCTA+TGG | + | chr1_3:39363993-39364012 | None:intergenic | 40.0% | |
| AGAGGCAACAACTTTCTTCT+AGG | - | chr1_3:39363994-39364013 | Msa0117730:CDS | 40.0% | |
| !! | CAGCCAATATGCTTTGAAGA+AGG | - | chr1_3:39364134-39364153 | Msa0117730:CDS | 40.0% |
| !! | GAAAGTATTTGCCACCAATG+AGG | - | chr1_3:39364202-39364221 | Msa0117730:CDS | 40.0% |
| TTCTTGGTCAGATACCTCAT+TGG | + | chr1_3:39364219-39364238 | None:intergenic | 40.0% | |
| ! | TGAGGTATCTGACCAAGAAA+CGG | - | chr1_3:39364220-39364239 | Msa0117730:CDS | 40.0% |
| ATAATTCCAGCTCCGTTTCT+TGG | + | chr1_3:39364235-39364254 | None:intergenic | 40.0% | |
| TGATACGGTGATTTCCAACA+AGG | + | chr1_3:39364323-39364342 | None:intergenic | 40.0% | |
| GAAATCACCGTATCACGAAA+AGG | - | chr1_3:39364328-39364347 | Msa0117730:CDS | 40.0% | |
| AAACTTTGCAGAAATGTGGG+TGG | - | chr1_3:39364354-39364373 | Msa0117730:CDS | 40.0% | |
| AACTTTGCAGAAATGTGGGT+GGG | - | chr1_3:39364355-39364374 | Msa0117730:CDS | 40.0% | |
| AAGATGAAGATCAGAGAGCA+AGG | - | chr1_3:39364384-39364403 | Msa0117730:CDS | 40.0% | |
| !! | AAAAGAACAAGTTGGTGGTG+AGG | - | chr1_3:39364466-39364485 | Msa0117730:CDS | 40.0% |
| TGAAGATGATGAAGCAGATG+AGG | - | chr1_3:39364581-39364600 | Msa0117730:CDS | 40.0% | |
| ! | TCATCTTCACCAGTGTTGTT+TGG | + | chr1_3:39364609-39364628 | None:intergenic | 40.0% |
| TGAAGATGATGAAGCAGATG+AGG | - | chr1_3:39364581-39364600 | Msa0117730:CDS | 40.0% | |
| TTGCTTCATCATCTTCACCA+GGG | + | chr1_3:39364656-39364675 | None:intergenic | 40.0% | |
| TTTGCTTCATCATCTTCACC+AGG | + | chr1_3:39364657-39364676 | None:intergenic | 40.0% | |
| TGAGGAACCAACTCATGAAT+TGG | - | chr1_3:39364677-39364696 | Msa0117730:intron | 40.0% | |
| GAGGAACCAACTCATGAATT+GGG | - | chr1_3:39364678-39364697 | Msa0117730:intron | 40.0% | |
| AGGAACCAACTCATGAATTG+GGG | - | chr1_3:39364679-39364698 | Msa0117730:intron | 40.0% | |
| !! | ATGTTGATGGCTGAAGTTCA+TGG | - | chr1_3:39365125-39365144 | Msa0117730:intron | 40.0% |
| !! | AATGGTGGTGATGGAAATGA+TGG | - | chr1_3:39365563-39365582 | Msa0117730:intron | 40.0% |
| TAGTCACCACTAAATAGAGG+TGG | + | chr1_3:39366060-39366079 | None:intergenic | 40.0% | |
| ! | GTGGTGACTAATTTTTGACG+GGG | - | chr1_3:39366070-39366089 | Msa0117730:intron | 40.0% |
| ! | ATTTTTGACGGGGAATCTGT+TGG | - | chr1_3:39366080-39366099 | Msa0117730:intron | 40.0% |
| ! | TTTTTGACGGGGAATCTGTT+GGG | - | chr1_3:39366081-39366100 | Msa0117730:intron | 40.0% |
| AACCTTTCACCACTTGCTTA+AGG | - | chr1_3:39366164-39366183 | Msa0117730:intron | 40.0% | |
| ACCTTTCACCACTTGCTTAA+GGG | - | chr1_3:39366165-39366184 | Msa0117730:intron | 40.0% | |
| ACTTAGATCCCTTAAGCAAG+TGG | + | chr1_3:39366176-39366195 | None:intergenic | 40.0% | |
| GTGATACATGATCTGGAAGT+TGG | + | chr1_3:39366692-39366711 | None:intergenic | 40.0% | |
| ! | AAAAGTGCATTTGACGGCTA+GGG | + | chr1_3:39366726-39366745 | None:intergenic | 40.0% |
| ! | TAAAAGTGCATTTGACGGCT+AGG | + | chr1_3:39366727-39366746 | None:intergenic | 40.0% |
| TGCTTTGATCTCTCAAGTCA+AGG | + | chr1_3:39366829-39366848 | None:intergenic | 40.0% | |
| !! | AGCTCAAAGTGGGTTAGTAA+TGG | + | chr1_3:39367098-39367117 | None:intergenic | 40.0% |
| TTTGCATGGAAGCTCAAAGT+GGG | + | chr1_3:39367108-39367127 | None:intergenic | 40.0% | |
| ATTTGCATGGAAGCTCAAAG+TGG | + | chr1_3:39367109-39367128 | None:intergenic | 40.0% | |
| GAAGATTAAAATGGGCGTCT+CGG | + | chr1_3:39368057-39368076 | None:intergenic | 40.0% | |
| GACTTAACAAATAGGGACGT+TGG | + | chr1_3:39368257-39368276 | None:intergenic | 40.0% | |
| GGGTCTACTCACTCAAAAAT+GGG | + | chr1_3:39368702-39368721 | None:intergenic | 40.0% | |
| TGGGTCTACTCACTCAAAAA+TGG | + | chr1_3:39368703-39368722 | None:intergenic | 40.0% | |
| !! | TGGTGCTATGGAATTGTTTG+TGG | + | chr1_3:39369408-39369427 | None:intergenic | 40.0% |
| ! | TAAGAAAGTTGCTGGTGCTA+TGG | + | chr1_3:39369420-39369439 | None:intergenic | 40.0% |
| AGCACCAGCAACTTTCTTAA+AGG | - | chr1_3:39369421-39369440 | Msa0117730:intron | 40.0% | |
| TGCTGCAAAGAACACATGAA+TGG | + | chr1_3:39369495-39369514 | None:intergenic | 40.0% | |
| TTCATGTGTTCTTTGCAGCA+AGG | - | chr1_3:39369495-39369514 | Msa0117730:CDS | 40.0% | |
| ATGAAATGGCACAGCCAAAA+TGG | - | chr1_3:39369550-39369569 | Msa0117730:CDS | 40.0% | |
| AGCCAAAATGGTTCGAAGAA+GGG | - | chr1_3:39369562-39369581 | Msa0117730:CDS | 40.0% | |
| ! | TACCCTTCTTCGAACCATTT+TGG | + | chr1_3:39369567-39369586 | None:intergenic | 40.0% |
| CAATGGATGGAAACTGATCT+AGG | + | chr1_3:39369603-39369622 | None:intergenic | 40.0% | |
| TTCTTGGTCCCGTATCTTAT+TGG | + | chr1_3:39369646-39369665 | None:intergenic | 40.0% | |
| TAAGATACGGGACCAAGAAA+CGG | - | chr1_3:39369647-39369666 | Msa0117730:CDS | 40.0% | |
| TGAATCACCGTGACTGTAAA+AGG | - | chr1_3:39369758-39369777 | Msa0117730:CDS | 40.0% | |
| GTGAAGATCAATGAACAAGG+TGG | - | chr1_3:39369814-39369833 | Msa0117730:intron | 40.0% | |
| ! | CAATGAAAAGAACAGGTTGG+TGG | - | chr1_3:39369843-39369862 | Msa0117730:CDS | 40.0% |
| ACATTGTTATCATTGGAGGC+AGG | + | chr1_3:39369925-39369944 | None:intergenic | 40.0% | |
| GTAGAGAACAATACCGATGA+AGG | - | chr1_3:39369943-39369962 | Msa0117730:CDS | 40.0% | |
| TACCGATGAAGGTGATGAAA+CGG | - | chr1_3:39369954-39369973 | Msa0117730:CDS | 40.0% | |
| ATCCGTTTCATCACCTTCAT+CGG | + | chr1_3:39369959-39369978 | None:intergenic | 40.0% | |
| ATGAAGGTGATGAAACGGAT+GGG | - | chr1_3:39369959-39369978 | Msa0117730:CDS | 40.0% | |
| TGTGACAGAGAATTCACCAC+TGG | - | chr1_3:39363940-39363959 | Msa0117730:CDS | 45.0% | |
| TGCCTCTATGGAATGCTTTG+TGG | + | chr1_3:39363981-39364000 | None:intergenic | 45.0% | |
| GCAACGAACACATGAATGGT+TGG | + | chr1_3:39364064-39364083 | None:intergenic | 45.0% | |
| TGCTGCAACGAACACATGAA+TGG | + | chr1_3:39364068-39364087 | None:intergenic | 45.0% | |
| TTGGTCAGATACCTCATTGG+TGG | + | chr1_3:39364216-39364235 | None:intergenic | 45.0% | |
| GATGAGGAACCAAACAACAC+TGG | - | chr1_3:39364597-39364616 | Msa0117730:CDS | 45.0% | |
| TCATCTTCACCAGGGTTGTT+TGG | + | chr1_3:39364648-39364667 | None:intergenic | 45.0% | |
| TCATCTGCATCATCATCCAC+TGG | + | chr1_3:39364741-39364760 | None:intergenic | 45.0% | |
| TCCCTTAAGCAAGTGGTGAA+AGG | + | chr1_3:39366169-39366188 | None:intergenic | 45.0% | |
| TGCCACAATTTAAGGAGGTG+TGG | - | chr1_3:39366466-39366485 | Msa0117730:intron | 45.0% | |
| AGCCACACCTCCTTAAATTG+TGG | + | chr1_3:39366471-39366490 | None:intergenic | 45.0% | |
| ! | AGGAGGTGTGGCTGAAAAAT+AGG | - | chr1_3:39366478-39366497 | Msa0117730:intron | 45.0% |
| GGCAATGGAATTTCGATGGA+TGG | + | chr1_3:39366904-39366923 | None:intergenic | 45.0% | |
| TGGGTTCGAAACTTGTGACA+TGG | + | chr1_3:39367153-39367172 | None:intergenic | 45.0% | |
| ATAGGGACGTTGGATGAGAA+TGG | + | chr1_3:39368247-39368266 | None:intergenic | 45.0% | |
| TGTGCTAGAGAATTCACCTC+TGG | - | chr1_3:39369367-39369386 | Msa0117730:CDS | 45.0% | |
| ! | TTCACCTCTGGTAATGCACT+CGG | - | chr1_3:39369379-39369398 | Msa0117730:CDS | 45.0% |
| GCAAAGAACACATGAATGGC+TGG | + | chr1_3:39369491-39369510 | None:intergenic | 45.0% | |
| CAGCCAAAATGGTTCGAAGA+AGG | - | chr1_3:39369561-39369580 | Msa0117730:CDS | 45.0% | |
| TTGGTCCCGTATCTTATTGG+TGG | + | chr1_3:39369643-39369662 | None:intergenic | 45.0% | |
| ATAATCCCAGCTCCGTTTCT+TGG | + | chr1_3:39369662-39369681 | None:intergenic | 45.0% | |
| GATGAAGGTGATGAAACGGA+TGG | - | chr1_3:39369958-39369977 | Msa0117730:CDS | 45.0% | |
| TGAAGGTGATGAAACGGATG+GGG | - | chr1_3:39369960-39369979 | Msa0117730:CDS | 45.0% | |
| !! | AGAAAATAAAAAAAAAAATA+CGG | - | chr1_3:39368618-39368637 | Msa0117730:intron | 5.0% |
| ! | GGCCACAAAGCATTCCATAG+AGG | - | chr1_3:39363976-39363995 | Msa0117730:CDS | 50.0% |
| ATCTGACCAAGAAACGGAGC+TGG | - | chr1_3:39364226-39364245 | Msa0117730:CDS | 50.0% | |
| TCATGTTGCTGCAGCAATGC+TGG | - | chr1_3:39364272-39364291 | Msa0117730:CDS | 50.0% | |
| CGATCGCCTAACAACCTTGT+TGG | - | chr1_3:39364306-39364325 | Msa0117730:CDS | 50.0% | |
| TGCAGAAATGTGGGTGGGAT+TGG | - | chr1_3:39364360-39364379 | Msa0117730:CDS | 50.0% | |
| GCAGAAATGTGGGTGGGATT+GGG | - | chr1_3:39364361-39364380 | Msa0117730:CDS | 50.0% | |
| GATGAGGAACCAAACAACCC+TGG | - | chr1_3:39364636-39364655 | Msa0117730:intron | 50.0% | |
| CGATTTGAATGAGCTGCCAG+TGG | - | chr1_3:39364722-39364741 | Msa0117730:intron | 50.0% | |
| !! | TTGACTTGCAGAAGGCTGTG+AGG | - | chr1_3:39365880-39365899 | Msa0117730:intron | 50.0% |
| GGGAATCTGTTGGGATCACA+AGG | - | chr1_3:39366090-39366109 | Msa0117730:intron | 50.0% | |
| TGATTCTGTGCTGCAGAGTG+TGG | + | chr1_3:39369157-39369176 | None:intergenic | 50.0% | |
| ! | TTCACCACTGGTAACGCCCT+CGG | - | chr1_3:39363952-39363971 | Msa0117730:CDS | 55.0% |
| TCTGTGCTGCAGAGTGTGGA+GGG | + | chr1_3:39369153-39369172 | None:intergenic | 55.0% | |
| TTCTGTGCTGCAGAGTGTGG+AGG | + | chr1_3:39369154-39369173 | None:intergenic | 55.0% | |
| ! | ACCTCTGGTAATGCACTCGG+CGG | - | chr1_3:39369382-39369401 | Msa0117730:CDS | 55.0% |
| GAATGCTTTGTGGCCGCCGA+GGG | + | chr1_3:39363971-39363990 | None:intergenic | 60.0% | |
| ACGGGACCAAGAAACGGAGC+TGG | - | chr1_3:39369653-39369672 | Msa0117730:intron | 60.0% | |
| CGGGACCAAGAAACGGAGCT+GGG | - | chr1_3:39369654-39369673 | Msa0117730:intron | 60.0% | |
| ! | ACCACTGGTAACGCCCTCGG+CGG | - | chr1_3:39363955-39363974 | Msa0117730:CDS | 65.0% |
| GGAATGCTTTGTGGCCGCCG+AGG | + | chr1_3:39363972-39363991 | None:intergenic | 65.0% | |
| GCCGCCGAGTGCATTACCAG+AGG | + | chr1_3:39369386-39369405 | None:intergenic | 65.0% | |
| !! | GCCGCCGAGGGCGTTACCAG+TGG | + | chr1_3:39363959-39363978 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 39363841 | 39370074 | 39363841 | ID=Msa0117730;Name=Msa0117730 |
| chr1_3 | mRNA | 39363841 | 39370074 | 39363841 | ID=Msa0117730-mRNA-1;Parent=Msa0117730;Name=Msa0117730-mRNA-1;_AED=0.07;_eAED=0.13;_QI=0|0|0|1|0|0|5|0|491 |
| chr1_3 | exon | 39369841 | 39370074 | 39369841 | ID=Msa0117730-mRNA-1:exon:12180;Parent=Msa0117730-mRNA-1 |
| chr1_3 | exon | 39369692 | 39369825 | 39369692 | ID=Msa0117730-mRNA-1:exon:12179;Parent=Msa0117730-mRNA-1 |
| chr1_3 | exon | 39369428 | 39369670 | 39369428 | ID=Msa0117730-mRNA-1:exon:12178;Parent=Msa0117730-mRNA-1 |
| chr1_3 | exon | 39369336 | 39369420 | 39369336 | ID=Msa0117730-mRNA-1:exon:12177;Parent=Msa0117730-mRNA-1 |
| chr1_3 | exon | 39363841 | 39364620 | 39363841 | ID=Msa0117730-mRNA-1:exon:12176;Parent=Msa0117730-mRNA-1 |
| chr1_3 | CDS | 39369841 | 39370074 | 39369841 | ID=Msa0117730-mRNA-1:cds;Parent=Msa0117730-mRNA-1 |
| chr1_3 | CDS | 39369692 | 39369825 | 39369692 | ID=Msa0117730-mRNA-1:cds;Parent=Msa0117730-mRNA-1 |
| chr1_3 | CDS | 39369428 | 39369670 | 39369428 | ID=Msa0117730-mRNA-1:cds;Parent=Msa0117730-mRNA-1 |
| chr1_3 | CDS | 39369336 | 39369420 | 39369336 | ID=Msa0117730-mRNA-1:cds;Parent=Msa0117730-mRNA-1 |
| chr1_3 | CDS | 39363841 | 39364620 | 39363841 | ID=Msa0117730-mRNA-1:cds;Parent=Msa0117730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
