Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117740 | RHN79225.1 | 75.394 | 317 | 47 | 4 | 1 | 317 | 1 | 286 | 5.20e-138 | 402 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117740 | A0A396JSM8 | 75.394 | 317 | 47 | 4 | 1 | 317 | 1 | 286 | 2.48e-138 | 402 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0117740 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117740 | MtrunA17_Chr1g0174871 | 75.394 | 317 | 47 | 4 | 1 | 317 | 1 | 286 | 4.78e-142 | 402 |
| Msa0117740 | MtrunA17_Chr1g0174861 | 56.279 | 215 | 76 | 6 | 52 | 262 | 36 | 236 | 8.73e-66 | 207 |
| Msa0117740 | MtrunA17_Chr1g0169561 | 33.233 | 331 | 122 | 14 | 30 | 314 | 37 | 314 | 1.79e-29 | 114 |
| Msa0117740 | MtrunA17_Chr1g0169521 | 32.424 | 330 | 128 | 13 | 30 | 315 | 37 | 315 | 7.48e-29 | 112 |
| Msa0117740 | MtrunA17_Chr1g0172861 | 30.137 | 292 | 152 | 13 | 31 | 313 | 30 | 278 | 7.77e-21 | 90.5 |
| Msa0117740 | MtrunA17_Chr7g0214511 | 29.749 | 279 | 127 | 10 | 43 | 315 | 71 | 286 | 6.98e-17 | 79.3 |
| Msa0117740 | MtrunA17_Chr1g0172961 | 29.614 | 233 | 138 | 9 | 31 | 245 | 30 | 254 | 6.91e-16 | 76.3 |
| Msa0117740 | MtrunA17_Chr4g0037041 | 37.500 | 128 | 61 | 4 | 14 | 133 | 16 | 132 | 4.69e-15 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 65 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAAAGTTGTTGCCTCTA+TGG | 0.288255 | 1_3:+39380875 | None:intergenic |
| ACTCTCATCACAAAACAAAA+AGG | 0.340650 | 1_3:-39380990 | Msa0117740:CDS |
| TCATCTTCACCAGGGTTGTT+TGG | 0.341135 | 1_3:+39380214 | None:intergenic |
| TCATCTTCACCAGGGTTGTT+TGG | 0.341135 | 1_3:+39380253 | None:intergenic |
| TGAGGAACCAACTCATGAAT+TGG | 0.350528 | 1_3:-39380182 | Msa0117740:CDS |
| ATAATTCCAGCTCCGTTTCA+TGG | 0.360348 | 1_3:+39380627 | None:intergenic |
| GTTCTCTTCATTATCATCAT+TGG | 0.362989 | 1_3:+39380312 | None:intergenic |
| TCTTCGAAGTCGAACCATAT+TGG | 0.367921 | 1_3:+39380728 | None:intergenic |
| ATGAAATCGCACAGCCAATA+TGG | 0.368027 | 1_3:-39380742 | Msa0117740:CDS |
| ATCATTGGAAGCAGATTGAT+TGG | 0.381296 | 1_3:+39380327 | None:intergenic |
| GAGGAACCAACTCATGAATT+GGG | 0.382420 | 1_3:-39380181 | Msa0117740:CDS |
| AAATACTTTCTCAAATCAAT+TGG | 0.400225 | 1_3:+39380670 | None:intergenic |
| TGATTCCCAACAAGGTTGTT+AGG | 0.405927 | 1_3:+39380547 | None:intergenic |
| CGATCACCTAACAACCTTGT+TGG | 0.409603 | 1_3:-39380553 | Msa0117740:CDS |
| TGCAGAAATGTGGGTGGGAA+TGG | 0.425504 | 1_3:-39380499 | Msa0117740:CDS |
| TGCCTCTATGGAATGCTTTG+TGG | 0.438332 | 1_3:+39380887 | None:intergenic |
| GATCACCTAACAACCTTGTT+GGG | 0.442776 | 1_3:-39380552 | Msa0117740:CDS |
| TCATCTGTCAATGCACTGAA+TGG | 0.463276 | 1_3:-39380769 | Msa0117740:CDS |
| TGTGACAGAGAATTCTCAAC+TGG | 0.474765 | 1_3:-39380925 | Msa0117740:CDS |
| TACTTTCTCAAATCAATTGG+TGG | 0.486384 | 1_3:+39380673 | None:intergenic |
| TCTGCTTCATCATCTTCACC+AGG | 0.486883 | 1_3:+39380244 | None:intergenic |
| GCAGAAATGTGGGTGGGAAT+GGG | 0.488317 | 1_3:-39380498 | Msa0117740:CDS |
| TTTGCTTCATCATCTTCACC+AGG | 0.497903 | 1_3:+39380205 | None:intergenic |
| TTCATGGTCACATACCTCAT+TGG | 0.503644 | 1_3:+39380643 | None:intergenic |
| TTTAACCCCAATTCATGAGT+TGG | 0.505846 | 1_3:+39380175 | None:intergenic |
| CAATTGGTGGAAATTGATCC+AGG | 0.509751 | 1_3:+39380686 | None:intergenic |
| GGAATCACCGTGTCACGAAA+AGG | 0.512728 | 1_3:-39380531 | Msa0117740:CDS |
| TTCTCAACTGGTAATGCTCT+CGG | 0.517217 | 1_3:-39380913 | Msa0117740:CDS |
| GATCAAACTTTGCAGAAATG+TGG | 0.524856 | 1_3:-39380509 | Msa0117740:CDS |
| ATATGGTTCGACTTCGAAGA+AGG | 0.528018 | 1_3:-39380725 | Msa0117740:CDS |
| CAACAAGGTTGTTAGGTGAT+CGG | 0.537111 | 1_3:+39380554 | None:intergenic |
| ATGTGACCATGAAACGGAGC+TGG | 0.548343 | 1_3:-39380633 | Msa0117740:CDS |
| ATCAAACTTTGCAGAAATGT+GGG | 0.554714 | 1_3:-39380508 | Msa0117740:CDS |
| AAAAGGAGTGTTGTTGATCA+TGG | 0.555395 | 1_3:-39380973 | Msa0117740:CDS |
| ATGGTCACATACCTCATTGG+TGG | 0.556780 | 1_3:+39380646 | None:intergenic |
| GGGTAGTAAGATTTATGACC+TGG | 0.563188 | 1_3:-39380704 | Msa0117740:CDS |
| TGAGGTATGTGACCATGAAA+CGG | 0.563267 | 1_3:-39380639 | Msa0117740:CDS |
| GAAGATCAGAGAGCAAGGTA+TGG | 0.572806 | 1_3:-39380470 | Msa0117740:CDS |
| TTATGTTGCAGAAACAATGT+TGG | 0.573586 | 1_3:-39380587 | Msa0117740:CDS |
| TCATCTGCATCATCATCCAC+TGG | 0.575486 | 1_3:+39380121 | None:intergenic |
| AATCAATGAGAAGAACAAGT+TGG | 0.575910 | 1_3:-39380401 | Msa0117740:CDS |
| AGAAGAACAAGTTGGTGGTG+AGG | 0.577583 | 1_3:-39380393 | Msa0117740:CDS |
| AACTTTGCAGAAATGTGGGT+GGG | 0.585412 | 1_3:-39380504 | Msa0117740:CDS |
| GCAACGAACACATGAATGGT+TGG | 0.590907 | 1_3:+39380804 | None:intergenic |
| CAATGAGAAGAACAAGTTGG+TGG | 0.592690 | 1_3:-39380398 | Msa0117740:CDS |
| TGAAGATGATGAAGCAAATG+AGG | 0.593094 | 1_3:-39380200 | Msa0117740:CDS |
| CGATTTGAATGAGCTGCCAG+TGG | 0.597243 | 1_3:-39380137 | Msa0117740:CDS |
| GATCAGAGAGCAAGGTATGG+TGG | 0.597334 | 1_3:-39380467 | Msa0117740:CDS |
| AAGATGAAGATCAGAGAGCA+AGG | 0.598147 | 1_3:-39380475 | Msa0117740:CDS |
| TATGGTTCGACTTCGAAGAA+GGG | 0.600043 | 1_3:-39380724 | Msa0117740:CDS |
| TTGCTTCATCATCTTCACCA+GGG | 0.604583 | 1_3:+39380206 | None:intergenic |
| CTGCTTCATCATCTTCACCA+GGG | 0.614062 | 1_3:+39380245 | None:intergenic |
| TGACACGGTGATTCCCAACA+AGG | 0.616814 | 1_3:+39380539 | None:intergenic |
| AAACTTTGCAGAAATGTGGG+TGG | 0.628923 | 1_3:-39380505 | Msa0117740:CDS |
| AGGAACCAACTCATGAATTG+GGG | 0.629510 | 1_3:-39380180 | Msa0117740:CDS |
| GAAAGTATTTGCCACCAATG+AGG | 0.638748 | 1_3:-39380657 | Msa0117740:CDS |
| GGCCACAAAGCATTCCATAG+AGG | 0.645608 | 1_3:-39380889 | Msa0117740:CDS |
| TGCTGCAACGAACACATGAA+TGG | 0.655011 | 1_3:+39380800 | None:intergenic |
| TGAAGATGATGAAGCAGATG+AGG | 0.659995 | 1_3:-39380239 | Msa0117740:CDS |
| TGAAGATGATGAAGCAGATG+AGG | 0.659995 | 1_3:-39380278 | Msa0117740:CDS |
| AATGAAGAGAACAACAACAC+TGG | 0.663304 | 1_3:-39380301 | Msa0117740:CDS |
| GTGAGGTTAAAGATTCCGAA+TGG | 0.667579 | 1_3:-39380376 | Msa0117740:CDS |
| GATGAGGAACCAAACAACCC+TGG | 0.684317 | 1_3:-39380223 | Msa0117740:CDS |
| GATGAGGAACCAAACAACCC+TGG | 0.684317 | 1_3:-39380262 | Msa0117740:CDS |
| TCAACTGGTAATGCTCTCGG+CGG | 0.775161 | 1_3:-39380910 | Msa0117740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATACTTTCTCAAATCAAT+TGG | + | chr1_3:39380480-39380499 | None:intergenic | 20.0% |
| !! | AAATACTTTCTCAAATCAAT+TGG | + | chr1_3:39380480-39380499 | None:intergenic | 20.0% |
| ACTCTCATCACAAAACAAAA+AGG | - | chr1_3:39380157-39380176 | Msa0117740:CDS | 30.0% | |
| AACAAAGAAAAACATGCTGA+TGG | - | chr1_3:39380306-39380325 | Msa0117740:CDS | 30.0% | |
| TACTTTCTCAAATCAATTGG+TGG | + | chr1_3:39380477-39380496 | None:intergenic | 30.0% | |
| TTATGTTGCAGAAACAATGT+TGG | - | chr1_3:39380560-39380579 | Msa0117740:CDS | 30.0% | |
| ATCAAACTTTGCAGAAATGT+GGG | - | chr1_3:39380639-39380658 | Msa0117740:CDS | 30.0% | |
| AATCAATGAGAAGAACAAGT+TGG | - | chr1_3:39380746-39380765 | Msa0117740:CDS | 30.0% | |
| ! | CTTGTGATTTTTGAATGACA+AGG | + | chr1_3:39380797-39380816 | None:intergenic | 30.0% |
| GTTCTCTTCATTATCATCAT+TGG | + | chr1_3:39380838-39380857 | None:intergenic | 30.0% | |
| ACTCTCATCACAAAACAAAA+AGG | - | chr1_3:39380157-39380176 | Msa0117740:CDS | 30.0% | |
| AACAAAGAAAAACATGCTGA+TGG | - | chr1_3:39380306-39380325 | Msa0117740:CDS | 30.0% | |
| TACTTTCTCAAATCAATTGG+TGG | + | chr1_3:39380477-39380496 | None:intergenic | 30.0% | |
| TTATGTTGCAGAAACAATGT+TGG | - | chr1_3:39380560-39380579 | Msa0117740:CDS | 30.0% | |
| ATCAAACTTTGCAGAAATGT+GGG | - | chr1_3:39380639-39380658 | Msa0117740:CDS | 30.0% | |
| AATCAATGAGAAGAACAAGT+TGG | - | chr1_3:39380746-39380765 | Msa0117740:CDS | 30.0% | |
| ! | CTTGTGATTTTTGAATGACA+AGG | + | chr1_3:39380797-39380816 | None:intergenic | 30.0% |
| GTTCTCTTCATTATCATCAT+TGG | + | chr1_3:39380838-39380857 | None:intergenic | 30.0% | |
| !! | AAAAGGAGTGTTGTTGATCA+TGG | - | chr1_3:39380174-39380193 | Msa0117740:CDS | 35.0% |
| AAAGAAAGTTGTTGCCTCTA+TGG | + | chr1_3:39380275-39380294 | None:intergenic | 35.0% | |
| ! | AGAGGCAACAACTTTCTTTT+AGG | - | chr1_3:39380276-39380295 | Msa0117740:CDS | 35.0% |
| GATCAAACTTTGCAGAAATG+TGG | - | chr1_3:39380638-39380657 | Msa0117740:CDS | 35.0% | |
| ! | TTTTGAATGACAAGGCCATT+CGG | + | chr1_3:39380789-39380808 | None:intergenic | 35.0% |
| ATCATTGGAAGCAGATTGAT+TGG | + | chr1_3:39380823-39380842 | None:intergenic | 35.0% | |
| AATGAAGAGAACAACAACAC+TGG | - | chr1_3:39380846-39380865 | Msa0117740:CDS | 35.0% | |
| TGAAGATGATGAAGCAAATG+AGG | - | chr1_3:39380947-39380966 | Msa0117740:CDS | 35.0% | |
| TTTAACCCCAATTCATGAGT+TGG | + | chr1_3:39380975-39380994 | None:intergenic | 35.0% | |
| !! | AAAAGGAGTGTTGTTGATCA+TGG | - | chr1_3:39380174-39380193 | Msa0117740:CDS | 35.0% |
| AAAGAAAGTTGTTGCCTCTA+TGG | + | chr1_3:39380275-39380294 | None:intergenic | 35.0% | |
| ! | AGAGGCAACAACTTTCTTTT+AGG | - | chr1_3:39380276-39380295 | Msa0117740:CDS | 35.0% |
| GATCAAACTTTGCAGAAATG+TGG | - | chr1_3:39380638-39380657 | Msa0117740:CDS | 35.0% | |
| ! | TTTTGAATGACAAGGCCATT+CGG | + | chr1_3:39380789-39380808 | None:intergenic | 35.0% |
| ATCATTGGAAGCAGATTGAT+TGG | + | chr1_3:39380823-39380842 | None:intergenic | 35.0% | |
| AATGAAGAGAACAACAACAC+TGG | - | chr1_3:39380846-39380865 | Msa0117740:CDS | 35.0% | |
| TGAAGATGATGAAGCAAATG+AGG | - | chr1_3:39380947-39380966 | Msa0117740:CDS | 35.0% | |
| TTTAACCCCAATTCATGAGT+TGG | + | chr1_3:39380975-39380994 | None:intergenic | 35.0% | |
| TGTGACAGAGAATTCTCAAC+TGG | - | chr1_3:39380222-39380241 | Msa0117740:CDS | 40.0% | |
| ! | TTCTCAACTGGTAATGCTCT+CGG | - | chr1_3:39380234-39380253 | Msa0117740:CDS | 40.0% |
| TCATCTGTCAATGCACTGAA+TGG | - | chr1_3:39380378-39380397 | Msa0117740:CDS | 40.0% | |
| ATGAAATCGCACAGCCAATA+TGG | - | chr1_3:39380405-39380424 | Msa0117740:CDS | 40.0% | |
| TCTTCGAAGTCGAACCATAT+TGG | + | chr1_3:39380422-39380441 | None:intergenic | 40.0% | |
| ATATGGTTCGACTTCGAAGA+AGG | - | chr1_3:39380422-39380441 | Msa0117740:CDS | 40.0% | |
| TATGGTTCGACTTCGAAGAA+GGG | - | chr1_3:39380423-39380442 | Msa0117740:CDS | 40.0% | |
| GGGTAGTAAGATTTATGACC+TGG | - | chr1_3:39380443-39380462 | Msa0117740:CDS | 40.0% | |
| CAATTGGTGGAAATTGATCC+AGG | + | chr1_3:39380464-39380483 | None:intergenic | 40.0% | |
| !! | GAAAGTATTTGCCACCAATG+AGG | - | chr1_3:39380490-39380509 | Msa0117740:CDS | 40.0% |
| TTCATGGTCACATACCTCAT+TGG | + | chr1_3:39380507-39380526 | None:intergenic | 40.0% | |
| TGAGGTATGTGACCATGAAA+CGG | - | chr1_3:39380508-39380527 | Msa0117740:CDS | 40.0% | |
| ATAATTCCAGCTCCGTTTCA+TGG | + | chr1_3:39380523-39380542 | None:intergenic | 40.0% | |
| CAACAAGGTTGTTAGGTGAT+CGG | + | chr1_3:39380596-39380615 | None:intergenic | 40.0% | |
| GATCACCTAACAACCTTGTT+GGG | - | chr1_3:39380595-39380614 | Msa0117740:CDS | 40.0% | |
| TGATTCCCAACAAGGTTGTT+AGG | + | chr1_3:39380603-39380622 | None:intergenic | 40.0% | |
| ! | GTTTGATCCTTTTCGTGACA+CGG | + | chr1_3:39380626-39380645 | None:intergenic | 40.0% |
| AAACTTTGCAGAAATGTGGG+TGG | - | chr1_3:39380642-39380661 | Msa0117740:CDS | 40.0% | |
| AACTTTGCAGAAATGTGGGT+GGG | - | chr1_3:39380643-39380662 | Msa0117740:CDS | 40.0% | |
| AAGATGAAGATCAGAGAGCA+AGG | - | chr1_3:39380672-39380691 | Msa0117740:CDS | 40.0% | |
| ! | CAATGAGAAGAACAAGTTGG+TGG | - | chr1_3:39380749-39380768 | Msa0117740:CDS | 40.0% |
| GTGAGGTTAAAGATTCCGAA+TGG | - | chr1_3:39380771-39380790 | Msa0117740:CDS | 40.0% | |
| TGAAGATGATGAAGCAGATG+AGG | - | chr1_3:39380869-39380888 | Msa0117740:CDS | 40.0% | |
| TGAAGATGATGAAGCAGATG+AGG | - | chr1_3:39380869-39380888 | Msa0117740:CDS | 40.0% | |
| TTGCTTCATCATCTTCACCA+GGG | + | chr1_3:39380944-39380963 | None:intergenic | 40.0% | |
| TTTGCTTCATCATCTTCACC+AGG | + | chr1_3:39380945-39380964 | None:intergenic | 40.0% | |
| TGAGGAACCAACTCATGAAT+TGG | - | chr1_3:39380965-39380984 | Msa0117740:CDS | 40.0% | |
| GAGGAACCAACTCATGAATT+GGG | - | chr1_3:39380966-39380985 | Msa0117740:CDS | 40.0% | |
| AGGAACCAACTCATGAATTG+GGG | - | chr1_3:39380967-39380986 | Msa0117740:CDS | 40.0% | |
| TGTGACAGAGAATTCTCAAC+TGG | - | chr1_3:39380222-39380241 | Msa0117740:CDS | 40.0% | |
| ! | TTCTCAACTGGTAATGCTCT+CGG | - | chr1_3:39380234-39380253 | Msa0117740:CDS | 40.0% |
| TCATCTGTCAATGCACTGAA+TGG | - | chr1_3:39380378-39380397 | Msa0117740:CDS | 40.0% | |
| ATGAAATCGCACAGCCAATA+TGG | - | chr1_3:39380405-39380424 | Msa0117740:CDS | 40.0% | |
| TCTTCGAAGTCGAACCATAT+TGG | + | chr1_3:39380422-39380441 | None:intergenic | 40.0% | |
| ATATGGTTCGACTTCGAAGA+AGG | - | chr1_3:39380422-39380441 | Msa0117740:CDS | 40.0% | |
| TATGGTTCGACTTCGAAGAA+GGG | - | chr1_3:39380423-39380442 | Msa0117740:CDS | 40.0% | |
| GGGTAGTAAGATTTATGACC+TGG | - | chr1_3:39380443-39380462 | Msa0117740:CDS | 40.0% | |
| CAATTGGTGGAAATTGATCC+AGG | + | chr1_3:39380464-39380483 | None:intergenic | 40.0% | |
| !! | GAAAGTATTTGCCACCAATG+AGG | - | chr1_3:39380490-39380509 | Msa0117740:CDS | 40.0% |
| TTCATGGTCACATACCTCAT+TGG | + | chr1_3:39380507-39380526 | None:intergenic | 40.0% | |
| TGAGGTATGTGACCATGAAA+CGG | - | chr1_3:39380508-39380527 | Msa0117740:CDS | 40.0% | |
| ATAATTCCAGCTCCGTTTCA+TGG | + | chr1_3:39380523-39380542 | None:intergenic | 40.0% | |
| CAACAAGGTTGTTAGGTGAT+CGG | + | chr1_3:39380596-39380615 | None:intergenic | 40.0% | |
| GATCACCTAACAACCTTGTT+GGG | - | chr1_3:39380595-39380614 | Msa0117740:CDS | 40.0% | |
| TGATTCCCAACAAGGTTGTT+AGG | + | chr1_3:39380603-39380622 | None:intergenic | 40.0% | |
| ! | GTTTGATCCTTTTCGTGACA+CGG | + | chr1_3:39380626-39380645 | None:intergenic | 40.0% |
| AAACTTTGCAGAAATGTGGG+TGG | - | chr1_3:39380642-39380661 | Msa0117740:CDS | 40.0% | |
| AACTTTGCAGAAATGTGGGT+GGG | - | chr1_3:39380643-39380662 | Msa0117740:CDS | 40.0% | |
| AAGATGAAGATCAGAGAGCA+AGG | - | chr1_3:39380672-39380691 | Msa0117740:CDS | 40.0% | |
| ! | CAATGAGAAGAACAAGTTGG+TGG | - | chr1_3:39380749-39380768 | Msa0117740:CDS | 40.0% |
| GTGAGGTTAAAGATTCCGAA+TGG | - | chr1_3:39380771-39380790 | Msa0117740:CDS | 40.0% | |
| TGAAGATGATGAAGCAGATG+AGG | - | chr1_3:39380869-39380888 | Msa0117740:CDS | 40.0% | |
| TGAAGATGATGAAGCAGATG+AGG | - | chr1_3:39380869-39380888 | Msa0117740:CDS | 40.0% | |
| TTGCTTCATCATCTTCACCA+GGG | + | chr1_3:39380944-39380963 | None:intergenic | 40.0% | |
| TTTGCTTCATCATCTTCACC+AGG | + | chr1_3:39380945-39380964 | None:intergenic | 40.0% | |
| TGAGGAACCAACTCATGAAT+TGG | - | chr1_3:39380965-39380984 | Msa0117740:CDS | 40.0% | |
| GAGGAACCAACTCATGAATT+GGG | - | chr1_3:39380966-39380985 | Msa0117740:CDS | 40.0% | |
| AGGAACCAACTCATGAATTG+GGG | - | chr1_3:39380967-39380986 | Msa0117740:CDS | 40.0% | |
| TGCCTCTATGGAATGCTTTG+TGG | + | chr1_3:39380263-39380282 | None:intergenic | 45.0% | |
| GCAACGAACACATGAATGGT+TGG | + | chr1_3:39380346-39380365 | None:intergenic | 45.0% | |
| TGCTGCAACGAACACATGAA+TGG | + | chr1_3:39380350-39380369 | None:intergenic | 45.0% | |
| ATGGTCACATACCTCATTGG+TGG | + | chr1_3:39380504-39380523 | None:intergenic | 45.0% | |
| CGATCACCTAACAACCTTGT+TGG | - | chr1_3:39380594-39380613 | Msa0117740:CDS | 45.0% | |
| GAAGATCAGAGAGCAAGGTA+TGG | - | chr1_3:39380677-39380696 | Msa0117740:CDS | 45.0% | |
| !! | AGAAGAACAAGTTGGTGGTG+AGG | - | chr1_3:39380754-39380773 | Msa0117740:CDS | 45.0% |
| TCATCTTCACCAGGGTTGTT+TGG | + | chr1_3:39380897-39380916 | None:intergenic | 45.0% | |
| CTGCTTCATCATCTTCACCA+GGG | + | chr1_3:39380866-39380885 | None:intergenic | 45.0% | |
| TCTGCTTCATCATCTTCACC+AGG | + | chr1_3:39380867-39380886 | None:intergenic | 45.0% | |
| TCATCTTCACCAGGGTTGTT+TGG | + | chr1_3:39380897-39380916 | None:intergenic | 45.0% | |
| TCATCTGCATCATCATCCAC+TGG | + | chr1_3:39381029-39381048 | None:intergenic | 45.0% | |
| TGCCTCTATGGAATGCTTTG+TGG | + | chr1_3:39380263-39380282 | None:intergenic | 45.0% | |
| GCAACGAACACATGAATGGT+TGG | + | chr1_3:39380346-39380365 | None:intergenic | 45.0% | |
| TGCTGCAACGAACACATGAA+TGG | + | chr1_3:39380350-39380369 | None:intergenic | 45.0% | |
| ATGGTCACATACCTCATTGG+TGG | + | chr1_3:39380504-39380523 | None:intergenic | 45.0% | |
| CGATCACCTAACAACCTTGT+TGG | - | chr1_3:39380594-39380613 | Msa0117740:CDS | 45.0% | |
| GAAGATCAGAGAGCAAGGTA+TGG | - | chr1_3:39380677-39380696 | Msa0117740:CDS | 45.0% | |
| !! | AGAAGAACAAGTTGGTGGTG+AGG | - | chr1_3:39380754-39380773 | Msa0117740:CDS | 45.0% |
| TCATCTTCACCAGGGTTGTT+TGG | + | chr1_3:39380897-39380916 | None:intergenic | 45.0% | |
| CTGCTTCATCATCTTCACCA+GGG | + | chr1_3:39380866-39380885 | None:intergenic | 45.0% | |
| TCTGCTTCATCATCTTCACC+AGG | + | chr1_3:39380867-39380886 | None:intergenic | 45.0% | |
| TCATCTTCACCAGGGTTGTT+TGG | + | chr1_3:39380897-39380916 | None:intergenic | 45.0% | |
| TCATCTGCATCATCATCCAC+TGG | + | chr1_3:39381029-39381048 | None:intergenic | 45.0% | |
| ! | TCAACTGGTAATGCTCTCGG+CGG | - | chr1_3:39380237-39380256 | Msa0117740:CDS | 50.0% |
| ! | GGCCACAAAGCATTCCATAG+AGG | - | chr1_3:39380258-39380277 | Msa0117740:CDS | 50.0% |
| ATGTGACCATGAAACGGAGC+TGG | - | chr1_3:39380514-39380533 | Msa0117740:CDS | 50.0% | |
| TGACACGGTGATTCCCAACA+AGG | + | chr1_3:39380611-39380630 | None:intergenic | 50.0% | |
| GGAATCACCGTGTCACGAAA+AGG | - | chr1_3:39380616-39380635 | Msa0117740:CDS | 50.0% | |
| TGCAGAAATGTGGGTGGGAA+TGG | - | chr1_3:39380648-39380667 | Msa0117740:CDS | 50.0% | |
| GCAGAAATGTGGGTGGGAAT+GGG | - | chr1_3:39380649-39380668 | Msa0117740:CDS | 50.0% | |
| GATCAGAGAGCAAGGTATGG+TGG | - | chr1_3:39380680-39380699 | Msa0117740:CDS | 50.0% | |
| GATGAGGAACCAAACAACCC+TGG | - | chr1_3:39380885-39380904 | Msa0117740:CDS | 50.0% | |
| GATGAGGAACCAAACAACCC+TGG | - | chr1_3:39380885-39380904 | Msa0117740:CDS | 50.0% | |
| CGATTTGAATGAGCTGCCAG+TGG | - | chr1_3:39381010-39381029 | Msa0117740:CDS | 50.0% | |
| ! | TCAACTGGTAATGCTCTCGG+CGG | - | chr1_3:39380237-39380256 | Msa0117740:CDS | 50.0% |
| ! | GGCCACAAAGCATTCCATAG+AGG | - | chr1_3:39380258-39380277 | Msa0117740:CDS | 50.0% |
| ATGTGACCATGAAACGGAGC+TGG | - | chr1_3:39380514-39380533 | Msa0117740:CDS | 50.0% | |
| TGACACGGTGATTCCCAACA+AGG | + | chr1_3:39380611-39380630 | None:intergenic | 50.0% | |
| GGAATCACCGTGTCACGAAA+AGG | - | chr1_3:39380616-39380635 | Msa0117740:CDS | 50.0% | |
| TGCAGAAATGTGGGTGGGAA+TGG | - | chr1_3:39380648-39380667 | Msa0117740:CDS | 50.0% | |
| GCAGAAATGTGGGTGGGAAT+GGG | - | chr1_3:39380649-39380668 | Msa0117740:CDS | 50.0% | |
| GATCAGAGAGCAAGGTATGG+TGG | - | chr1_3:39380680-39380699 | Msa0117740:CDS | 50.0% | |
| GATGAGGAACCAAACAACCC+TGG | - | chr1_3:39380885-39380904 | Msa0117740:CDS | 50.0% | |
| GATGAGGAACCAAACAACCC+TGG | - | chr1_3:39380885-39380904 | Msa0117740:CDS | 50.0% | |
| CGATTTGAATGAGCTGCCAG+TGG | - | chr1_3:39381010-39381029 | Msa0117740:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 39380108 | 39381061 | 39380108 | ID=Msa0117740;Name=Msa0117740 |
| chr1_3 | mRNA | 39380108 | 39381061 | 39380108 | ID=Msa0117740-mRNA-1;Parent=Msa0117740;Name=Msa0117740-mRNA-1;_AED=0.51;_eAED=0.52;_QI=0|-1|0|1|-1|1|1|0|317 |
| chr1_3 | exon | 39380108 | 39381061 | 39380108 | ID=Msa0117740-mRNA-1:exon:12190;Parent=Msa0117740-mRNA-1 |
| chr1_3 | CDS | 39380108 | 39381061 | 39380108 | ID=Msa0117740-mRNA-1:cds;Parent=Msa0117740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
