Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117750 | RHN79225.1 | 75.394 | 317 | 47 | 4 | 1 | 317 | 1 | 286 | 5.20e-138 | 402 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117750 | A0A396JSM8 | 75.394 | 317 | 47 | 4 | 1 | 317 | 1 | 286 | 2.48e-138 | 402 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0117750 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117750 | MtrunA17_Chr1g0174871 | 75.394 | 317 | 47 | 4 | 1 | 317 | 1 | 286 | 4.78e-142 | 402 |
| Msa0117750 | MtrunA17_Chr1g0174861 | 56.279 | 215 | 76 | 6 | 52 | 262 | 36 | 236 | 8.73e-66 | 207 |
| Msa0117750 | MtrunA17_Chr1g0169561 | 33.233 | 331 | 122 | 14 | 30 | 314 | 37 | 314 | 1.79e-29 | 114 |
| Msa0117750 | MtrunA17_Chr1g0169521 | 32.424 | 330 | 128 | 13 | 30 | 315 | 37 | 315 | 7.48e-29 | 112 |
| Msa0117750 | MtrunA17_Chr1g0172861 | 30.137 | 292 | 152 | 13 | 31 | 313 | 30 | 278 | 7.77e-21 | 90.5 |
| Msa0117750 | MtrunA17_Chr7g0214511 | 29.749 | 279 | 127 | 10 | 43 | 315 | 71 | 286 | 6.98e-17 | 79.3 |
| Msa0117750 | MtrunA17_Chr1g0172961 | 29.614 | 233 | 138 | 9 | 31 | 245 | 30 | 254 | 6.91e-16 | 76.3 |
| Msa0117750 | MtrunA17_Chr4g0037041 | 37.500 | 128 | 61 | 4 | 14 | 133 | 16 | 132 | 4.69e-15 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 65 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAAAGTTGTTGCCTCTA+TGG | 0.288255 | 1_3:+39387763 | None:intergenic |
| ACTCTCATCACAAAACAAAA+AGG | 0.340650 | 1_3:-39387878 | Msa0117750:CDS |
| TCATCTTCACCAGGGTTGTT+TGG | 0.341135 | 1_3:+39387102 | None:intergenic |
| TCATCTTCACCAGGGTTGTT+TGG | 0.341135 | 1_3:+39387141 | None:intergenic |
| TGAGGAACCAACTCATGAAT+TGG | 0.350528 | 1_3:-39387070 | Msa0117750:CDS |
| ATAATTCCAGCTCCGTTTCA+TGG | 0.360348 | 1_3:+39387515 | None:intergenic |
| GTTCTCTTCATTATCATCAT+TGG | 0.362989 | 1_3:+39387200 | None:intergenic |
| TCTTCGAAGTCGAACCATAT+TGG | 0.367921 | 1_3:+39387616 | None:intergenic |
| ATGAAATCGCACAGCCAATA+TGG | 0.368027 | 1_3:-39387630 | Msa0117750:CDS |
| ATCATTGGAAGCAGATTGAT+TGG | 0.381296 | 1_3:+39387215 | None:intergenic |
| GAGGAACCAACTCATGAATT+GGG | 0.382420 | 1_3:-39387069 | Msa0117750:CDS |
| AAATACTTTCTCAAATCAAT+TGG | 0.400225 | 1_3:+39387558 | None:intergenic |
| TGATTCCCAACAAGGTTGTT+AGG | 0.405927 | 1_3:+39387435 | None:intergenic |
| CGATCACCTAACAACCTTGT+TGG | 0.409603 | 1_3:-39387441 | Msa0117750:CDS |
| TGCAGAAATGTGGGTGGGAA+TGG | 0.425504 | 1_3:-39387387 | Msa0117750:CDS |
| AGAAGAACAAGTTGGTGGTT+AGG | 0.425663 | 1_3:-39387281 | Msa0117750:CDS |
| TGCCTCTATGGAATGCTTTG+TGG | 0.438332 | 1_3:+39387775 | None:intergenic |
| GATCACCTAACAACCTTGTT+GGG | 0.442776 | 1_3:-39387440 | Msa0117750:CDS |
| TCATCTGTCAATGCACTGAA+TGG | 0.463276 | 1_3:-39387657 | Msa0117750:CDS |
| TGTGACAGAGAATTCTCAAC+TGG | 0.474765 | 1_3:-39387813 | Msa0117750:CDS |
| TACTTTCTCAAATCAATTGG+TGG | 0.486384 | 1_3:+39387561 | None:intergenic |
| TCTGCTTCATCATCTTCACC+AGG | 0.486883 | 1_3:+39387132 | None:intergenic |
| GCAGAAATGTGGGTGGGAAT+GGG | 0.488317 | 1_3:-39387386 | Msa0117750:CDS |
| TTTGCTTCATCATCTTCACC+AGG | 0.497903 | 1_3:+39387093 | None:intergenic |
| TTCATGGTCACATACCTCAT+TGG | 0.503644 | 1_3:+39387531 | None:intergenic |
| TTTAACCCCAATTCATGAGT+TGG | 0.505846 | 1_3:+39387063 | None:intergenic |
| CAATTGGTGGAAATTGATCC+AGG | 0.509751 | 1_3:+39387574 | None:intergenic |
| GGAATCACCGTGTCACGAAA+AGG | 0.512728 | 1_3:-39387419 | Msa0117750:CDS |
| TTCTCAACTGGTAATGCTCT+CGG | 0.517217 | 1_3:-39387801 | Msa0117750:CDS |
| GATCAAACTTTGCAGAAATG+TGG | 0.524856 | 1_3:-39387397 | Msa0117750:CDS |
| ATATGGTTCGACTTCGAAGA+AGG | 0.528018 | 1_3:-39387613 | Msa0117750:CDS |
| CAACAAGGTTGTTAGGTGAT+CGG | 0.537111 | 1_3:+39387442 | None:intergenic |
| ATGTGACCATGAAACGGAGC+TGG | 0.548343 | 1_3:-39387521 | Msa0117750:CDS |
| ATCAAACTTTGCAGAAATGT+GGG | 0.554714 | 1_3:-39387396 | Msa0117750:CDS |
| AAAAGGAGTGTTGTTGATCA+TGG | 0.555395 | 1_3:-39387861 | Msa0117750:CDS |
| ATGGTCACATACCTCATTGG+TGG | 0.556780 | 1_3:+39387534 | None:intergenic |
| GGGTAGTAAGATTTATGACC+TGG | 0.563188 | 1_3:-39387592 | Msa0117750:CDS |
| TGAGGTATGTGACCATGAAA+CGG | 0.563267 | 1_3:-39387527 | Msa0117750:CDS |
| GAAGATCAGAGAGCAAGGTA+TGG | 0.572806 | 1_3:-39387358 | Msa0117750:CDS |
| TTATGTTGCAGAAACAATGT+TGG | 0.573586 | 1_3:-39387475 | Msa0117750:CDS |
| TCATCTGCATCATCATCCAC+TGG | 0.575486 | 1_3:+39387009 | None:intergenic |
| AATCAATGAGAAGAACAAGT+TGG | 0.575910 | 1_3:-39387289 | Msa0117750:CDS |
| AACTTTGCAGAAATGTGGGT+GGG | 0.585412 | 1_3:-39387392 | Msa0117750:CDS |
| GCAACGAACACATGAATGGT+TGG | 0.590907 | 1_3:+39387692 | None:intergenic |
| TGAAGATGATGAAGCAAATG+AGG | 0.593094 | 1_3:-39387088 | Msa0117750:CDS |
| CAATGAGAAGAACAAGTTGG+TGG | 0.593608 | 1_3:-39387286 | Msa0117750:CDS |
| CGATTTGAATGAGCTGCCAG+TGG | 0.597243 | 1_3:-39387025 | Msa0117750:CDS |
| GATCAGAGAGCAAGGTATGG+TGG | 0.597334 | 1_3:-39387355 | Msa0117750:CDS |
| AAGATGAAGATCAGAGAGCA+AGG | 0.598147 | 1_3:-39387363 | Msa0117750:CDS |
| TATGGTTCGACTTCGAAGAA+GGG | 0.600043 | 1_3:-39387612 | Msa0117750:CDS |
| TTGCTTCATCATCTTCACCA+GGG | 0.604583 | 1_3:+39387094 | None:intergenic |
| CTGCTTCATCATCTTCACCA+GGG | 0.614062 | 1_3:+39387133 | None:intergenic |
| TGACACGGTGATTCCCAACA+AGG | 0.616814 | 1_3:+39387427 | None:intergenic |
| AAACTTTGCAGAAATGTGGG+TGG | 0.628923 | 1_3:-39387393 | Msa0117750:CDS |
| AGGAACCAACTCATGAATTG+GGG | 0.629510 | 1_3:-39387068 | Msa0117750:CDS |
| TGAAGACGATGAAGCAGATG+AGG | 0.631563 | 1_3:-39387166 | Msa0117750:CDS |
| GTTAGGTTAAAGATTCCGAA+TGG | 0.637974 | 1_3:-39387264 | Msa0117750:CDS |
| GAAAGTATTTGCCACCAATG+AGG | 0.638748 | 1_3:-39387545 | Msa0117750:CDS |
| GGCCACAAAGCATTCCATAG+AGG | 0.645608 | 1_3:-39387777 | Msa0117750:CDS |
| TGCTGCAACGAACACATGAA+TGG | 0.655011 | 1_3:+39387688 | None:intergenic |
| TGAAGATGATGAAGCAGATG+AGG | 0.659995 | 1_3:-39387127 | Msa0117750:CDS |
| AATGAAGAGAACAACAACAC+TGG | 0.663304 | 1_3:-39387189 | Msa0117750:CDS |
| GATGAGGAACCAAACAACCC+TGG | 0.684317 | 1_3:-39387111 | Msa0117750:CDS |
| GATGAGGAACCAAACAACCC+TGG | 0.684317 | 1_3:-39387150 | Msa0117750:CDS |
| TCAACTGGTAATGCTCTCGG+CGG | 0.775161 | 1_3:-39387798 | Msa0117750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATACTTTCTCAAATCAAT+TGG | + | chr1_3:39387368-39387387 | None:intergenic | 20.0% |
| !! | AAATACTTTCTCAAATCAAT+TGG | + | chr1_3:39387368-39387387 | None:intergenic | 20.0% |
| ACTCTCATCACAAAACAAAA+AGG | - | chr1_3:39387045-39387064 | Msa0117750:CDS | 30.0% | |
| AACAAAGAAAAACATGCTGA+TGG | - | chr1_3:39387194-39387213 | Msa0117750:CDS | 30.0% | |
| TACTTTCTCAAATCAATTGG+TGG | + | chr1_3:39387365-39387384 | None:intergenic | 30.0% | |
| TTATGTTGCAGAAACAATGT+TGG | - | chr1_3:39387448-39387467 | Msa0117750:CDS | 30.0% | |
| ATCAAACTTTGCAGAAATGT+GGG | - | chr1_3:39387527-39387546 | Msa0117750:CDS | 30.0% | |
| AATCAATGAGAAGAACAAGT+TGG | - | chr1_3:39387634-39387653 | Msa0117750:CDS | 30.0% | |
| ! | CTTGTGATTTTTGAATGACA+AGG | + | chr1_3:39387685-39387704 | None:intergenic | 30.0% |
| GTTCTCTTCATTATCATCAT+TGG | + | chr1_3:39387726-39387745 | None:intergenic | 30.0% | |
| ACTCTCATCACAAAACAAAA+AGG | - | chr1_3:39387045-39387064 | Msa0117750:CDS | 30.0% | |
| AACAAAGAAAAACATGCTGA+TGG | - | chr1_3:39387194-39387213 | Msa0117750:CDS | 30.0% | |
| TACTTTCTCAAATCAATTGG+TGG | + | chr1_3:39387365-39387384 | None:intergenic | 30.0% | |
| TTATGTTGCAGAAACAATGT+TGG | - | chr1_3:39387448-39387467 | Msa0117750:CDS | 30.0% | |
| ATCAAACTTTGCAGAAATGT+GGG | - | chr1_3:39387527-39387546 | Msa0117750:CDS | 30.0% | |
| AATCAATGAGAAGAACAAGT+TGG | - | chr1_3:39387634-39387653 | Msa0117750:CDS | 30.0% | |
| ! | CTTGTGATTTTTGAATGACA+AGG | + | chr1_3:39387685-39387704 | None:intergenic | 30.0% |
| GTTCTCTTCATTATCATCAT+TGG | + | chr1_3:39387726-39387745 | None:intergenic | 30.0% | |
| !! | AAAAGGAGTGTTGTTGATCA+TGG | - | chr1_3:39387062-39387081 | Msa0117750:CDS | 35.0% |
| AAAGAAAGTTGTTGCCTCTA+TGG | + | chr1_3:39387163-39387182 | None:intergenic | 35.0% | |
| ! | AGAGGCAACAACTTTCTTTT+AGG | - | chr1_3:39387164-39387183 | Msa0117750:CDS | 35.0% |
| GATCAAACTTTGCAGAAATG+TGG | - | chr1_3:39387526-39387545 | Msa0117750:CDS | 35.0% | |
| GTTAGGTTAAAGATTCCGAA+TGG | - | chr1_3:39387659-39387678 | Msa0117750:CDS | 35.0% | |
| ! | TTTTGAATGACAAGGCCATT+CGG | + | chr1_3:39387677-39387696 | None:intergenic | 35.0% |
| ATCATTGGAAGCAGATTGAT+TGG | + | chr1_3:39387711-39387730 | None:intergenic | 35.0% | |
| AATGAAGAGAACAACAACAC+TGG | - | chr1_3:39387734-39387753 | Msa0117750:CDS | 35.0% | |
| TGAAGATGATGAAGCAAATG+AGG | - | chr1_3:39387835-39387854 | Msa0117750:CDS | 35.0% | |
| TTTAACCCCAATTCATGAGT+TGG | + | chr1_3:39387863-39387882 | None:intergenic | 35.0% | |
| !! | AAAAGGAGTGTTGTTGATCA+TGG | - | chr1_3:39387062-39387081 | Msa0117750:CDS | 35.0% |
| AAAGAAAGTTGTTGCCTCTA+TGG | + | chr1_3:39387163-39387182 | None:intergenic | 35.0% | |
| ! | AGAGGCAACAACTTTCTTTT+AGG | - | chr1_3:39387164-39387183 | Msa0117750:CDS | 35.0% |
| GATCAAACTTTGCAGAAATG+TGG | - | chr1_3:39387526-39387545 | Msa0117750:CDS | 35.0% | |
| GTTAGGTTAAAGATTCCGAA+TGG | - | chr1_3:39387659-39387678 | Msa0117750:CDS | 35.0% | |
| ! | TTTTGAATGACAAGGCCATT+CGG | + | chr1_3:39387677-39387696 | None:intergenic | 35.0% |
| ATCATTGGAAGCAGATTGAT+TGG | + | chr1_3:39387711-39387730 | None:intergenic | 35.0% | |
| AATGAAGAGAACAACAACAC+TGG | - | chr1_3:39387734-39387753 | Msa0117750:CDS | 35.0% | |
| TGAAGATGATGAAGCAAATG+AGG | - | chr1_3:39387835-39387854 | Msa0117750:CDS | 35.0% | |
| TTTAACCCCAATTCATGAGT+TGG | + | chr1_3:39387863-39387882 | None:intergenic | 35.0% | |
| TGTGACAGAGAATTCTCAAC+TGG | - | chr1_3:39387110-39387129 | Msa0117750:CDS | 40.0% | |
| ! | TTCTCAACTGGTAATGCTCT+CGG | - | chr1_3:39387122-39387141 | Msa0117750:CDS | 40.0% |
| TCATCTGTCAATGCACTGAA+TGG | - | chr1_3:39387266-39387285 | Msa0117750:CDS | 40.0% | |
| ATGAAATCGCACAGCCAATA+TGG | - | chr1_3:39387293-39387312 | Msa0117750:CDS | 40.0% | |
| TCTTCGAAGTCGAACCATAT+TGG | + | chr1_3:39387310-39387329 | None:intergenic | 40.0% | |
| ATATGGTTCGACTTCGAAGA+AGG | - | chr1_3:39387310-39387329 | Msa0117750:CDS | 40.0% | |
| TATGGTTCGACTTCGAAGAA+GGG | - | chr1_3:39387311-39387330 | Msa0117750:CDS | 40.0% | |
| GGGTAGTAAGATTTATGACC+TGG | - | chr1_3:39387331-39387350 | Msa0117750:CDS | 40.0% | |
| CAATTGGTGGAAATTGATCC+AGG | + | chr1_3:39387352-39387371 | None:intergenic | 40.0% | |
| !! | GAAAGTATTTGCCACCAATG+AGG | - | chr1_3:39387378-39387397 | Msa0117750:CDS | 40.0% |
| TTCATGGTCACATACCTCAT+TGG | + | chr1_3:39387395-39387414 | None:intergenic | 40.0% | |
| TGAGGTATGTGACCATGAAA+CGG | - | chr1_3:39387396-39387415 | Msa0117750:CDS | 40.0% | |
| ATAATTCCAGCTCCGTTTCA+TGG | + | chr1_3:39387411-39387430 | None:intergenic | 40.0% | |
| CAACAAGGTTGTTAGGTGAT+CGG | + | chr1_3:39387484-39387503 | None:intergenic | 40.0% | |
| GATCACCTAACAACCTTGTT+GGG | - | chr1_3:39387483-39387502 | Msa0117750:CDS | 40.0% | |
| TGATTCCCAACAAGGTTGTT+AGG | + | chr1_3:39387491-39387510 | None:intergenic | 40.0% | |
| ! | GTTTGATCCTTTTCGTGACA+CGG | + | chr1_3:39387514-39387533 | None:intergenic | 40.0% |
| AAACTTTGCAGAAATGTGGG+TGG | - | chr1_3:39387530-39387549 | Msa0117750:CDS | 40.0% | |
| AACTTTGCAGAAATGTGGGT+GGG | - | chr1_3:39387531-39387550 | Msa0117750:CDS | 40.0% | |
| AAGATGAAGATCAGAGAGCA+AGG | - | chr1_3:39387560-39387579 | Msa0117750:CDS | 40.0% | |
| ! | CAATGAGAAGAACAAGTTGG+TGG | - | chr1_3:39387637-39387656 | Msa0117750:CDS | 40.0% |
| !! | AGAAGAACAAGTTGGTGGTT+AGG | - | chr1_3:39387642-39387661 | Msa0117750:CDS | 40.0% |
| TGAAGATGATGAAGCAGATG+AGG | - | chr1_3:39387796-39387815 | Msa0117750:CDS | 40.0% | |
| TTGCTTCATCATCTTCACCA+GGG | + | chr1_3:39387832-39387851 | None:intergenic | 40.0% | |
| TTTGCTTCATCATCTTCACC+AGG | + | chr1_3:39387833-39387852 | None:intergenic | 40.0% | |
| TGAGGAACCAACTCATGAAT+TGG | - | chr1_3:39387853-39387872 | Msa0117750:CDS | 40.0% | |
| GAGGAACCAACTCATGAATT+GGG | - | chr1_3:39387854-39387873 | Msa0117750:CDS | 40.0% | |
| AGGAACCAACTCATGAATTG+GGG | - | chr1_3:39387855-39387874 | Msa0117750:CDS | 40.0% | |
| TGTGACAGAGAATTCTCAAC+TGG | - | chr1_3:39387110-39387129 | Msa0117750:CDS | 40.0% | |
| ! | TTCTCAACTGGTAATGCTCT+CGG | - | chr1_3:39387122-39387141 | Msa0117750:CDS | 40.0% |
| TCATCTGTCAATGCACTGAA+TGG | - | chr1_3:39387266-39387285 | Msa0117750:CDS | 40.0% | |
| ATGAAATCGCACAGCCAATA+TGG | - | chr1_3:39387293-39387312 | Msa0117750:CDS | 40.0% | |
| TCTTCGAAGTCGAACCATAT+TGG | + | chr1_3:39387310-39387329 | None:intergenic | 40.0% | |
| ATATGGTTCGACTTCGAAGA+AGG | - | chr1_3:39387310-39387329 | Msa0117750:CDS | 40.0% | |
| TATGGTTCGACTTCGAAGAA+GGG | - | chr1_3:39387311-39387330 | Msa0117750:CDS | 40.0% | |
| GGGTAGTAAGATTTATGACC+TGG | - | chr1_3:39387331-39387350 | Msa0117750:CDS | 40.0% | |
| CAATTGGTGGAAATTGATCC+AGG | + | chr1_3:39387352-39387371 | None:intergenic | 40.0% | |
| !! | GAAAGTATTTGCCACCAATG+AGG | - | chr1_3:39387378-39387397 | Msa0117750:CDS | 40.0% |
| TTCATGGTCACATACCTCAT+TGG | + | chr1_3:39387395-39387414 | None:intergenic | 40.0% | |
| TGAGGTATGTGACCATGAAA+CGG | - | chr1_3:39387396-39387415 | Msa0117750:CDS | 40.0% | |
| ATAATTCCAGCTCCGTTTCA+TGG | + | chr1_3:39387411-39387430 | None:intergenic | 40.0% | |
| CAACAAGGTTGTTAGGTGAT+CGG | + | chr1_3:39387484-39387503 | None:intergenic | 40.0% | |
| GATCACCTAACAACCTTGTT+GGG | - | chr1_3:39387483-39387502 | Msa0117750:CDS | 40.0% | |
| TGATTCCCAACAAGGTTGTT+AGG | + | chr1_3:39387491-39387510 | None:intergenic | 40.0% | |
| ! | GTTTGATCCTTTTCGTGACA+CGG | + | chr1_3:39387514-39387533 | None:intergenic | 40.0% |
| AAACTTTGCAGAAATGTGGG+TGG | - | chr1_3:39387530-39387549 | Msa0117750:CDS | 40.0% | |
| AACTTTGCAGAAATGTGGGT+GGG | - | chr1_3:39387531-39387550 | Msa0117750:CDS | 40.0% | |
| AAGATGAAGATCAGAGAGCA+AGG | - | chr1_3:39387560-39387579 | Msa0117750:CDS | 40.0% | |
| ! | CAATGAGAAGAACAAGTTGG+TGG | - | chr1_3:39387637-39387656 | Msa0117750:CDS | 40.0% |
| !! | AGAAGAACAAGTTGGTGGTT+AGG | - | chr1_3:39387642-39387661 | Msa0117750:CDS | 40.0% |
| TGAAGATGATGAAGCAGATG+AGG | - | chr1_3:39387796-39387815 | Msa0117750:CDS | 40.0% | |
| TTGCTTCATCATCTTCACCA+GGG | + | chr1_3:39387832-39387851 | None:intergenic | 40.0% | |
| TTTGCTTCATCATCTTCACC+AGG | + | chr1_3:39387833-39387852 | None:intergenic | 40.0% | |
| TGAGGAACCAACTCATGAAT+TGG | - | chr1_3:39387853-39387872 | Msa0117750:CDS | 40.0% | |
| GAGGAACCAACTCATGAATT+GGG | - | chr1_3:39387854-39387873 | Msa0117750:CDS | 40.0% | |
| AGGAACCAACTCATGAATTG+GGG | - | chr1_3:39387855-39387874 | Msa0117750:CDS | 40.0% | |
| TGCCTCTATGGAATGCTTTG+TGG | + | chr1_3:39387151-39387170 | None:intergenic | 45.0% | |
| GCAACGAACACATGAATGGT+TGG | + | chr1_3:39387234-39387253 | None:intergenic | 45.0% | |
| TGCTGCAACGAACACATGAA+TGG | + | chr1_3:39387238-39387257 | None:intergenic | 45.0% | |
| ATGGTCACATACCTCATTGG+TGG | + | chr1_3:39387392-39387411 | None:intergenic | 45.0% | |
| CGATCACCTAACAACCTTGT+TGG | - | chr1_3:39387482-39387501 | Msa0117750:CDS | 45.0% | |
| GAAGATCAGAGAGCAAGGTA+TGG | - | chr1_3:39387565-39387584 | Msa0117750:CDS | 45.0% | |
| TGAAGACGATGAAGCAGATG+AGG | - | chr1_3:39387757-39387776 | Msa0117750:CDS | 45.0% | |
| TCATCTTCACCAGGGTTGTT+TGG | + | chr1_3:39387785-39387804 | None:intergenic | 45.0% | |
| CTGCTTCATCATCTTCACCA+GGG | + | chr1_3:39387793-39387812 | None:intergenic | 45.0% | |
| TCTGCTTCATCATCTTCACC+AGG | + | chr1_3:39387794-39387813 | None:intergenic | 45.0% | |
| TCATCTTCACCAGGGTTGTT+TGG | + | chr1_3:39387785-39387804 | None:intergenic | 45.0% | |
| TCATCTGCATCATCATCCAC+TGG | + | chr1_3:39387917-39387936 | None:intergenic | 45.0% | |
| TGCCTCTATGGAATGCTTTG+TGG | + | chr1_3:39387151-39387170 | None:intergenic | 45.0% | |
| GCAACGAACACATGAATGGT+TGG | + | chr1_3:39387234-39387253 | None:intergenic | 45.0% | |
| TGCTGCAACGAACACATGAA+TGG | + | chr1_3:39387238-39387257 | None:intergenic | 45.0% | |
| ATGGTCACATACCTCATTGG+TGG | + | chr1_3:39387392-39387411 | None:intergenic | 45.0% | |
| CGATCACCTAACAACCTTGT+TGG | - | chr1_3:39387482-39387501 | Msa0117750:CDS | 45.0% | |
| GAAGATCAGAGAGCAAGGTA+TGG | - | chr1_3:39387565-39387584 | Msa0117750:CDS | 45.0% | |
| TGAAGACGATGAAGCAGATG+AGG | - | chr1_3:39387757-39387776 | Msa0117750:CDS | 45.0% | |
| TCATCTTCACCAGGGTTGTT+TGG | + | chr1_3:39387785-39387804 | None:intergenic | 45.0% | |
| CTGCTTCATCATCTTCACCA+GGG | + | chr1_3:39387793-39387812 | None:intergenic | 45.0% | |
| TCTGCTTCATCATCTTCACC+AGG | + | chr1_3:39387794-39387813 | None:intergenic | 45.0% | |
| TCATCTTCACCAGGGTTGTT+TGG | + | chr1_3:39387785-39387804 | None:intergenic | 45.0% | |
| TCATCTGCATCATCATCCAC+TGG | + | chr1_3:39387917-39387936 | None:intergenic | 45.0% | |
| ! | TCAACTGGTAATGCTCTCGG+CGG | - | chr1_3:39387125-39387144 | Msa0117750:CDS | 50.0% |
| ! | GGCCACAAAGCATTCCATAG+AGG | - | chr1_3:39387146-39387165 | Msa0117750:CDS | 50.0% |
| ATGTGACCATGAAACGGAGC+TGG | - | chr1_3:39387402-39387421 | Msa0117750:CDS | 50.0% | |
| TGACACGGTGATTCCCAACA+AGG | + | chr1_3:39387499-39387518 | None:intergenic | 50.0% | |
| GGAATCACCGTGTCACGAAA+AGG | - | chr1_3:39387504-39387523 | Msa0117750:CDS | 50.0% | |
| TGCAGAAATGTGGGTGGGAA+TGG | - | chr1_3:39387536-39387555 | Msa0117750:CDS | 50.0% | |
| GCAGAAATGTGGGTGGGAAT+GGG | - | chr1_3:39387537-39387556 | Msa0117750:CDS | 50.0% | |
| GATCAGAGAGCAAGGTATGG+TGG | - | chr1_3:39387568-39387587 | Msa0117750:CDS | 50.0% | |
| GATGAGGAACCAAACAACCC+TGG | - | chr1_3:39387773-39387792 | Msa0117750:CDS | 50.0% | |
| GATGAGGAACCAAACAACCC+TGG | - | chr1_3:39387773-39387792 | Msa0117750:CDS | 50.0% | |
| CGATTTGAATGAGCTGCCAG+TGG | - | chr1_3:39387898-39387917 | Msa0117750:CDS | 50.0% | |
| ! | TCAACTGGTAATGCTCTCGG+CGG | - | chr1_3:39387125-39387144 | Msa0117750:CDS | 50.0% |
| ! | GGCCACAAAGCATTCCATAG+AGG | - | chr1_3:39387146-39387165 | Msa0117750:CDS | 50.0% |
| ATGTGACCATGAAACGGAGC+TGG | - | chr1_3:39387402-39387421 | Msa0117750:CDS | 50.0% | |
| TGACACGGTGATTCCCAACA+AGG | + | chr1_3:39387499-39387518 | None:intergenic | 50.0% | |
| GGAATCACCGTGTCACGAAA+AGG | - | chr1_3:39387504-39387523 | Msa0117750:CDS | 50.0% | |
| TGCAGAAATGTGGGTGGGAA+TGG | - | chr1_3:39387536-39387555 | Msa0117750:CDS | 50.0% | |
| GCAGAAATGTGGGTGGGAAT+GGG | - | chr1_3:39387537-39387556 | Msa0117750:CDS | 50.0% | |
| GATCAGAGAGCAAGGTATGG+TGG | - | chr1_3:39387568-39387587 | Msa0117750:CDS | 50.0% | |
| GATGAGGAACCAAACAACCC+TGG | - | chr1_3:39387773-39387792 | Msa0117750:CDS | 50.0% | |
| GATGAGGAACCAAACAACCC+TGG | - | chr1_3:39387773-39387792 | Msa0117750:CDS | 50.0% | |
| CGATTTGAATGAGCTGCCAG+TGG | - | chr1_3:39387898-39387917 | Msa0117750:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 39386996 | 39387949 | 39386996 | ID=Msa0117750;Name=Msa0117750 |
| chr1_3 | mRNA | 39386996 | 39387949 | 39386996 | ID=Msa0117750-mRNA-1;Parent=Msa0117750;Name=Msa0117750-mRNA-1;_AED=0.51;_eAED=0.52;_QI=0|-1|0|1|-1|1|1|0|317 |
| chr1_3 | exon | 39386996 | 39387949 | 39386996 | ID=Msa0117750-mRNA-1:exon:12191;Parent=Msa0117750-mRNA-1 |
| chr1_3 | CDS | 39386996 | 39387949 | 39386996 | ID=Msa0117750-mRNA-1:cds;Parent=Msa0117750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
